Query psy354
Match_columns 207
No_of_seqs 150 out of 678
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 19:16:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1557|consensus 100.0 2E-103 4E-108 702.8 17.4 206 1-207 59-264 (363)
2 PLN02455 fructose-bisphosphate 100.0 6E-102 1E-106 702.4 20.3 205 1-207 55-259 (358)
3 cd00948 FBP_aldolase_I_a Fruct 100.0 1E-101 2E-106 696.1 20.3 206 1-207 47-252 (330)
4 PLN02227 fructose-bisphosphate 100.0 2E-101 5E-106 705.0 19.9 205 1-207 99-303 (399)
5 PTZ00019 fructose-bisphosphate 100.0 4E-101 1E-105 696.9 20.4 206 1-207 50-257 (355)
6 PLN02425 probable fructose-bis 100.0 1E-100 2E-105 699.7 20.0 205 1-207 90-294 (390)
7 cd00344 FBP_aldolase_I Fructos 100.0 1.8E-93 3.9E-98 644.7 19.3 207 1-207 47-253 (328)
8 PF00274 Glycolytic: Fructose- 100.0 9.5E-93 2.1E-97 644.9 14.0 206 1-207 45-250 (348)
9 COG3588 Fructose-1,6-bisphosph 100.0 1.8E-81 4E-86 559.0 11.7 206 1-207 48-253 (332)
10 PRK05377 fructose-1,6-bisphosp 100.0 1.2E-58 2.6E-63 411.5 14.9 174 1-183 54-231 (296)
11 cd00949 FBP_aldolase_I_bact Fr 100.0 4.3E-53 9.4E-58 375.4 13.1 173 1-182 51-227 (292)
12 PF01261 AP_endonuc_2: Xylose 60.5 82 0.0018 24.8 8.7 115 35-150 31-153 (213)
13 PF10058 DUF2296: Predicted in 54.1 1.5 3.3E-05 30.6 -2.2 20 115-134 20-43 (54)
14 PF08742 C8: C8 domain; Inter 53.0 11 0.00024 26.5 2.1 18 110-127 47-64 (74)
15 smart00832 C8 C8 domain. This 51.2 12 0.00026 27.2 2.1 17 110-126 49-65 (76)
16 cd07941 DRE_TIM_LeuA3 Desulfob 50.0 1.1E+02 0.0023 27.1 8.2 76 110-204 118-194 (273)
17 TIGR01227 hutG formimidoylglut 48.7 78 0.0017 28.5 7.2 89 45-145 38-127 (307)
18 TIGR03821 AblA_like_1 lysine-2 43.7 90 0.002 28.5 6.9 30 108-137 248-278 (321)
19 PRK13774 formimidoylglutamase; 38.7 1.1E+02 0.0023 27.8 6.6 87 45-145 47-136 (311)
20 TIGR01232 lacD tagatose 1,6-di 36.6 3.2E+02 0.0068 25.8 9.3 116 69-193 102-231 (325)
21 PRK13776 formimidoylglutamase; 35.2 1.3E+02 0.0029 27.3 6.6 86 45-145 45-133 (318)
22 cd00635 PLPDE_III_YBL036c_like 34.5 2E+02 0.0043 24.2 7.2 87 45-142 117-204 (222)
23 PRK13773 formimidoylglutamase; 33.5 1E+02 0.0023 28.0 5.7 86 45-145 47-135 (324)
24 PRK13772 formimidoylglutamase; 31.8 1.3E+02 0.0028 27.3 5.9 88 46-145 45-132 (314)
25 KOG2311|consensus 31.1 34 0.00074 34.4 2.2 68 3-77 149-217 (679)
26 PRK13775 formimidoylglutamase; 30.2 1.3E+02 0.0028 27.5 5.7 86 45-145 49-139 (328)
27 cd00949 FBP_aldolase_I_bact Fr 28.8 43 0.00093 31.0 2.3 18 63-80 111-128 (292)
28 PF01386 Ribosomal_L25p: Ribos 28.8 54 0.0012 24.3 2.5 30 29-58 6-35 (88)
29 COG3684 LacD Tagatose-1,6-bisp 28.4 4.5E+02 0.0097 24.6 8.7 107 63-179 101-211 (306)
30 PRK07226 fructose-bisphosphate 27.7 1.9E+02 0.0041 25.4 6.1 89 71-175 93-181 (267)
31 PRK12399 tagatose 1,6-diphosph 27.6 5.3E+02 0.011 24.3 9.4 113 70-193 102-230 (324)
32 PF02257 RFX_DNA_binding: RFX 27.6 56 0.0012 24.8 2.4 19 110-128 27-45 (85)
33 TIGR00421 ubiX_pad polyprenyl 26.5 3.2E+02 0.0069 23.0 7.0 81 64-160 90-172 (181)
34 PF14613 DUF4449: Protein of u 26.1 43 0.00093 28.4 1.7 28 72-99 128-156 (164)
35 PF02219 MTHFR: Methylenetetra 25.9 1.5E+02 0.0032 26.4 5.1 49 67-129 155-204 (287)
36 PF11285 DUF3086: Protein of u 25.0 35 0.00076 31.3 1.1 32 16-54 222-255 (283)
37 COG4943 Predicted signal trans 24.3 71 0.0015 31.8 3.0 79 71-160 267-345 (524)
38 PRK04161 tagatose 1,6-diphosph 23.9 6.2E+02 0.013 23.9 9.1 120 64-193 98-232 (329)
39 cd00495 Ribosomal_L25_TL5_CTC 23.3 61 0.0013 24.0 1.9 29 29-57 8-36 (91)
40 COG0779 Uncharacterized protei 23.2 54 0.0012 27.4 1.8 24 134-158 44-67 (153)
41 cd01299 Met_dep_hydrolase_A Me 23.2 90 0.002 27.4 3.3 97 65-167 114-219 (342)
42 COG4396 Mu-like prophage host- 22.4 34 0.00074 28.9 0.4 16 42-58 145-160 (170)
43 COG0505 CarA Carbamoylphosphat 22.2 75 0.0016 30.4 2.7 35 14-49 74-109 (368)
44 PRK05920 aromatic acid decarbo 21.5 5.4E+02 0.012 22.3 7.7 79 65-160 109-190 (204)
45 COG3370 Uncharacterized protei 21.3 1.1E+02 0.0023 24.8 3.0 57 89-164 32-91 (113)
46 PF07027 DUF1318: Protein of u 21.2 3E+02 0.0066 21.2 5.4 49 77-125 11-62 (95)
47 TIGR00222 panB 3-methyl-2-oxob 20.9 1E+02 0.0022 27.9 3.2 48 35-87 120-176 (263)
48 PHA02091 hypothetical protein 20.5 43 0.00093 24.6 0.6 17 85-101 29-45 (72)
49 PF04584 Pox_A28: Poxvirus A28 20.3 46 0.00099 27.8 0.7 9 88-96 70-78 (140)
50 PF15608 PELOTA_1: PELOTA RNA 20.2 54 0.0012 25.8 1.1 21 173-205 37-57 (100)
51 PF12738 PTCB-BRCT: twin BRCT 20.1 66 0.0014 21.6 1.4 13 119-132 50-62 (63)
52 COG0703 AroK Shikimate kinase 20.1 3.5E+02 0.0075 23.0 6.0 77 17-114 80-167 (172)
No 1
>KOG1557|consensus
Probab=100.00 E-value=2e-103 Score=702.81 Aligned_cols=206 Identities=72% Similarity=1.091 Sum_probs=204.8
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
|||+|||| |++++||||||||||||||+++||+||+|+|+++|||||||||||++||+|+++|++|||||||.+||++|
T Consensus 59 yRelLftt-pg~~~~IsGvILfeETlyQkt~dGkpf~~~L~~~givpGIKvDKG~vplaGt~~E~ttqGLD~L~~Rca~y 137 (363)
T KOG1557|consen 59 YRELLFTT-PGLNQYISGVILFEETLYQKTDDGKPFVDLLKEKGIVPGIKVDKGLVPLAGTNGETTTQGLDGLAERCAQY 137 (363)
T ss_pred HHHHhhcC-CChhhccceEEeeeehheeeCCCCCCHHHHHHhcCCccceEecCCcccccccCCcceeechhhHHHHHHHH
Confidence 89999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALN 160 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~ 160 (207)
|++||+|||||||++|++++||.+||.+||+.|||||+|||+||||||||||||.||||||+||++|||+||++||++|+
T Consensus 138 ~k~Ga~FAKWR~vlki~~~~PS~lai~EnA~~LARYA~IcQ~nGLVPIVEPEil~dGdHdi~r~~~VtE~Vla~vykaL~ 217 (363)
T KOG1557|consen 138 YKDGARFAKWRAVLKIGDGTPSALAIKENANGLARYASICQQNGLVPIVEPEILPDGDHDIKRCQYVTEKVLAAVYKALN 217 (363)
T ss_pred HHcCCchhheeEEEEecCCCchHHHHHHHHHHHHHHHHHHhhcCcccccccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 161 DHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 161 ~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
+|||||||+||||||||||++|+.|++||+||++||++|+|||||||
T Consensus 218 ~hhV~lEGtLLKPnMVTpG~~s~~K~tpe~iA~~TvtaLrrtVP~AV 264 (363)
T KOG1557|consen 218 DHHVYLEGTLLKPNMVTPGAESTEKYTPEQIALATVTALRRTVPAAV 264 (363)
T ss_pred hcceeeeceecccccccCCccccccCCHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999997
No 2
>PLN02455 fructose-bisphosphate aldolase
Probab=100.00 E-value=6.2e-102 Score=702.40 Aligned_cols=205 Identities=65% Similarity=0.992 Sum_probs=201.9
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
||++|||| |++++||||||||||||+|+++||+||+++|+++|||||||||||++|++|+++|++|+|||+|++||++|
T Consensus 55 yR~lLftt-p~~~~~IsGvILfeETl~Q~~~dG~p~~~~L~~~GIvPGIKVDkGl~~l~g~~ge~~t~GLDgL~~R~~~y 133 (358)
T PLN02455 55 LRELLFTA-PGALQYLSGVILFEETLYQKTSDGKPFVDVLKENGVLPGIKVDKGTVELAGTNGETTTQGLDGLGARCAKY 133 (358)
T ss_pred HHHhhccC-CcccccEEEEEcchHhccccccCCcCHHHHHHHCCCeeeEEecCCccccCCCCCCccCcchHHHHHHHHHH
Confidence 89999999 66799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALN 160 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~ 160 (207)
|++|||||||||||+|++++||..||.+||+.|||||+|||++||||||||||||||||||+||++|||+||++||++|+
T Consensus 134 ~~~GarFAKWRsVikI~~~~PS~~ai~~na~~LArYA~icQ~~GlVPIVEPEvL~dGdH~i~~c~~Vte~Vl~~vf~aL~ 213 (358)
T PLN02455 134 YEAGARFAKWRAVLKIGPTEPSELAIQENAQGLARYAIICQENGLVPIVEPEILVDGSHDIKKCAAVTERVLAACYKALN 213 (358)
T ss_pred HhcCCceeeceeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceecccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 161 DHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 161 ~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
+|||+|||||||||||+||++|+.+ |||+||++||++|+||||+||
T Consensus 214 ~~~V~lEG~LLKPnMV~pG~~~~~~-s~e~vA~~Tv~~l~rtVP~av 259 (358)
T PLN02455 214 DHHVLLEGTLLKPNMVTPGSDSPKV-SPEVIAEYTVRALQRTVPPAV 259 (358)
T ss_pred HcCcccccceeccccccCCcccCcC-CHHHHHHHHHHHHHhhCCccC
Confidence 9999999999999999999999766 999999999999999999997
No 3
>cd00948 FBP_aldolase_I_a Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). This family includes proteins found in vertebrates, plants, and bacterial plant pathogens. Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=100.00 E-value=1.1e-101 Score=696.11 Aligned_cols=206 Identities=69% Similarity=1.056 Sum_probs=203.7
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
||++|||| |++++||||||||||||+|+++||+||+++|+++|||||||||||++|++|.++|++|+|||+|++||++|
T Consensus 47 yR~llft~-p~~~~~IsGvILfeeTl~q~~~dG~p~~~~L~~~GIvPgIKVDkGl~~l~g~~~e~~t~GLD~L~~R~~~y 125 (330)
T cd00948 47 YRELLFTT-PGLGQYISGVILFEETLYQKTDDGKPFVDILKEKGIVPGIKVDKGLVPLAGTDGETTTQGLDGLAERCAKY 125 (330)
T ss_pred HHHhhccC-CCccccEEEEECChhhccccccCCcChHHHHHHCCCeeeEEeCCCccccCCCCCCccCcChHHHHHHHHHH
Confidence 89999999 77889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALN 160 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~ 160 (207)
|++|||||||||||+|++++||..+|.+|++.|||||++||++||||||||||||||||||+||++|||+||++||++|+
T Consensus 126 ~~~GarFAKwRsVi~i~~~~PS~~~I~~na~~LaryA~icq~~GLVPIVEPEVl~dG~H~i~~c~~vte~Vl~~vf~aL~ 205 (330)
T cd00948 126 YKQGARFAKWRAVLKIGNGTPSELAIKENAHGLARYAAICQENGLVPIVEPEVLMDGDHDIERCQEVTEKVLAAVYKALN 205 (330)
T ss_pred hhcCCcceeeheeeeccCCCCcHHHHHHHHHHHHHHHHHHHHcCCCceecccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 161 DHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 161 ~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
+|||+|||||||||||+||++|+.++|||+||++||++|+||||+||
T Consensus 206 ~~~V~lEG~lLKPnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 252 (330)
T cd00948 206 DHHVLLEGTLLKPNMVTPGADCKKKASPEEVAEYTVRALRRTVPAAV 252 (330)
T ss_pred HcCcccccceeccccccCCCcCCCcCCHHHHHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999999999999999997
No 4
>PLN02227 fructose-bisphosphate aldolase I
Probab=100.00 E-value=2.2e-101 Score=704.97 Aligned_cols=205 Identities=47% Similarity=0.765 Sum_probs=202.4
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
||++|||| |++++||||||||||||+|+++||+||+++||++|||||||||||++|++|.++|++|||||||++||++|
T Consensus 99 yR~lLftt-p~~~~~IsGvILFeETl~Q~~~dG~pf~d~L~~~GIVPGIKVDKGl~~l~g~~~e~~tqGLDgL~~R~~~Y 177 (399)
T PLN02227 99 YRTLLVSA-PGLGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLVGSYDESWCQGLDGLASRTAAY 177 (399)
T ss_pred HHHhcccC-cchhcceEEEEcchhhccCcCcCCcCHHHHHHHCCCeeeEEcCCCcccCCCCCCCccCCChHHHHHHHHHH
Confidence 89999999 67799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALN 160 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~ 160 (207)
|++|||||||||||+|+++ ||+.+|.+||+.|||||+|||++||||||||||||||||||+||++|||+||++||++|+
T Consensus 178 ~~~GarFAKWRsVikI~~~-PS~~aI~~na~~LArYA~icQ~~GLVPIVEPEVliDGdH~ie~c~~Vte~VL~~vfkaL~ 256 (399)
T PLN02227 178 YQQGARFAKWRTVVSIPNG-PSALAVKEAAWGLARYAAISQDSGLVPIVEPEIMLDGEHGIDRTYDVAEKVWAEVFFYLA 256 (399)
T ss_pred HHcCCceeehheeeccCCC-CCHHHHHHHHHHHHHHHHHHHHcCCCceecceecCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999976 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 161 DHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 161 ~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
+|||+|||||||||||+||++|+.++|||+||++||++|+||||+||
T Consensus 257 ~h~V~lEG~LLKPnMV~pG~~~~~~~s~e~VA~~Tv~~L~rtVP~AV 303 (399)
T PLN02227 257 QNNVMFEGILLKPSMVTPGAEATDRATPEQVASYTLKLLRNRIPPAV 303 (399)
T ss_pred HcCceeecceeccceeccCccCCCcCCHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999997
No 5
>PTZ00019 fructose-bisphosphate aldolase; Provisional
Probab=100.00 E-value=4.4e-101 Score=696.88 Aligned_cols=206 Identities=61% Similarity=0.915 Sum_probs=203.7
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
||++|||| |++++||||||||||||+|+++||+||+++|+++|||||||||||+.|++|+++|++|+|||+|++||++|
T Consensus 50 ~R~llftt-p~~~~~IsGvILfeETl~q~~~dG~p~~~~L~~~GIvPgIKVDkGl~~l~G~~~e~~t~GLD~L~~R~~~y 128 (355)
T PTZ00019 50 YRELLFTT-EGLEQYISGVILFEETVYQKAPSGKTFVELLKEKGIVPGIKVDKGLVTLPGTDGETSTQGLDGLAERAKKY 128 (355)
T ss_pred HHHhhccC-cchhhceEEEEcchHhccccccCCCChHHHHHHCCCeeeEEcCCCccCCCCCCCCccCcChHHHHHHHHHH
Confidence 89999999 77799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCccceeeeeeecC--CCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKIN--VNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKA 158 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~--~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~ 158 (207)
|++|||||||||||+|+ +++||..||.+|++.|||||+|||++||||||||||||||||||+||++|||+||++||++
T Consensus 129 ~~~GarFAKwRsVi~i~~~~g~PS~~aI~~na~~LaryA~icq~~GLVPIVEPEVlidG~H~i~~c~~vte~Vl~~v~~a 208 (355)
T PTZ00019 129 YKAGARFAKWRAVLKIDPAKGKPSELAIQENAWTLARYAAICQENGLVPIVEPEILIDGSHSIEVCQKVTEKVLAEVFKA 208 (355)
T ss_pred HhcCCceeeeeeeeeecCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCceecccccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 159 LNDHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 159 L~~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
|++|||+|||||||||||+||++|+.++|||+||++||++|+||||+||
T Consensus 209 L~~~~V~lEG~lLKPnMV~pG~~~~~~~s~e~vA~~Tv~~l~rtVP~av 257 (355)
T PTZ00019 209 LNDHGVLLEGCLLKPNMVTPGSDCGVKATPQEVAFYTVRTLSRTVPPAL 257 (355)
T ss_pred HHHcCCeecCceeccccccCCCcCCCCCCHHHHHHHHHHHHHhcCCccC
Confidence 9999999999999999999999999999999999999999999999997
No 6
>PLN02425 probable fructose-bisphosphate aldolase
Probab=100.00 E-value=1e-100 Score=699.65 Aligned_cols=205 Identities=52% Similarity=0.803 Sum_probs=202.6
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
||++|||| |++++||||||||||||+|+++||+||+|+|+++|||||||||||++|++|+++|++|+|||||++||++|
T Consensus 90 yR~lLftt-p~~~~~IsGvILFeETl~q~~~dG~p~~d~L~~~GIVPGIKVDkGl~~l~G~~~e~~t~GLDgL~~R~~~y 168 (390)
T PLN02425 90 YRQLLLTT-PGLGEYISGAILFEETLYQSTTDGKKFVDCLRDQNIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSAEY 168 (390)
T ss_pred HHhhhccC-cchhhceEEEEcchHhccccccCCcCHHHHHHHCCceeeEEecCCCCcCCCCCCCccCCChHHHHHHHHHH
Confidence 89999999 67799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALN 160 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~ 160 (207)
|++|||||||||||+|+++ ||+.+|++||+.|||||+|||++||||||||||||||||||+||++|||+||++||++|+
T Consensus 169 ~~~GarFAKWRsViki~~~-Ps~~aI~~na~~LArYA~icQ~~GLVPIVEPEVlidGdH~ie~c~~Vte~VL~~vf~aL~ 247 (390)
T PLN02425 169 YKQGARFAKWRTVVSIPCG-PSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGDHPIERTLEVAEKVWSEVFFYLA 247 (390)
T ss_pred HHcCCceeehheeeccCCC-CCHHHHHHHHHHHHHHHHHHHHcCCCceecceecCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999976 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 161 DHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 161 ~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
+|||+|||||||||||+||++|+.++|||+||++||++|+||||+||
T Consensus 248 ~~~V~lEG~LLKPnMV~pG~~~~~~~s~e~VA~~Tv~~l~rtVP~AV 294 (390)
T PLN02425 248 QNNVLFEGILLKPSMVTPGAEHKEKASPETIAKYTLTMLRRRVPPAV 294 (390)
T ss_pred HcCceeecceecccccccCCcCCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999997
No 7
>cd00344 FBP_aldolase_I Fructose-bisphosphate aldolase class I. Fructose-1,6-bisphosphate aldolase is an enzyme of the glycolytic and gluconeogenic pathways found in vertebrates, plants, and bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=100.00 E-value=1.8e-93 Score=644.68 Aligned_cols=207 Identities=71% Similarity=1.096 Sum_probs=204.9
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
||++|||+++++++||||||||||||+|++.+|++|+++|+++|||||||||||+.|++|+++|++|+|||+|++||++|
T Consensus 47 ~r~ll~~~~~~i~~~IsGvILfeeTl~q~~~~g~~~~~ll~~~GIvPgIKVDkGl~~l~g~~~ek~t~GLD~L~~R~~~y 126 (328)
T cd00344 47 YRQLLLTADDRVNPRIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQY 126 (328)
T ss_pred HHHHHhccCchhhccEEEEEechhhccccCCCCccHHHHHHhCCCeeeEEecCCcccCCCCCCCccCCChHHHHHHHHHH
Confidence 89999997789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALN 160 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~ 160 (207)
|++|||||||||||+|++++||..+|.+|++.|||||++||++||||||||||||||+|+|++|++||++||+++|++|+
T Consensus 127 ~~~GarfaKwRsVi~i~~~~Ps~~~I~~na~~laryA~~cq~~GLVPIVEPEVlidg~h~i~~~~~vt~~vl~~~~~~L~ 206 (328)
T cd00344 127 KKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALS 206 (328)
T ss_pred hhcCCceeeeeeeeecCCCCCcHHHHHHHHHHHHHHHHHHHHCCCCceecceeCCCCCccHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 161 DHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 161 ~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
+|+|+|||+|||||||+||++|+.++|+|+||++|+++|+|+||+||
T Consensus 207 ~~~V~leg~lLKpnmv~~G~~~~~~~~~~~va~~t~~~l~~~vP~aV 253 (328)
T cd00344 207 DHHIYLEGTLLKPNMVTPGHACTQKFSHEEIAMATVTALRRTVPPAV 253 (328)
T ss_pred hcCCcccCeEEEccccccCccCCCcCCHHHHHHhhHHHHHhhCCCcC
Confidence 99999999999999999999999999999999999999999999987
No 8
>PF00274 Glycolytic: Fructose-bisphosphate aldolase class-I; InterPro: IPR000741 Fructose-bisphosphate aldolase (4.1.2.13 from EC) [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms: class I enzymes [] do not require a metal ion, and are characterised by the formation of a Schiff base intermediate between a highly conserved active site lysine and a substrate carbonyl group, while the class II enzymes require an active-site divalent metal ion. This entry represents the class I enzymes. In vertebrates, three forms of this enzyme are found: aldolase A is expressed in muscle, aldolase B in liver, kidney, stomach and intestine, and aldolase C in brain, heart and ovary. The different isozymes have different catalytic functions: aldolases A and C are mainly involved in glycolysis, while aldolase B is involved in both glycolysis and gluconeogenesis. Defects in aldolase B result in hereditary fructose intolerance.; GO: 0004332 fructose-bisphosphate aldolase activity, 0006096 glycolysis; PDB: 1EX5_B 6ALD_D 2QUU_B 3DFN_B 1ADO_B 3DFO_A 1ZAL_A 1J4E_C 3DFP_A 1ZAJ_B ....
Probab=100.00 E-value=9.5e-93 Score=644.94 Aligned_cols=206 Identities=65% Similarity=0.978 Sum_probs=190.2
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
||++|||| ||+++||||||||||||+|++.||+||+++|+++|||||||||||+.|++|.++|++|+|||+|++||++|
T Consensus 45 yR~~l~tt-~~~~~~IsGvILfeeTl~q~~~~G~~~~~~L~~~GIvpgIKVDkGl~~l~~~~~ek~t~GLD~L~~R~~~y 123 (348)
T PF00274_consen 45 YRELLFTT-PGLSEYISGVILFEETLYQKTADGKPFPDYLKEKGIVPGIKVDKGLVPLPGGVQEKPTQGLDGLLERCAEY 123 (348)
T ss_dssp HHHHHHTS-GGGGGTEEEEEE-HHHHTSBETTSSBHHHHHHHTT-EEEEE---EEEEETTSSSEEEEETTTTHHHHHHHH
T ss_pred HHHhhhcc-cccccceEEEEcccchhhccccCCCChHHHHHhcCceeeEeccCceeccccCCCceeCCCcchHHHHHHHH
Confidence 89999999 99999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred hHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALN 160 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~ 160 (207)
+++|||||||||||+|++++||..+|.+|++.|||||++||++||||||||||+|||+|++++|++||++||++||++|+
T Consensus 124 ~~~GarFaKwRsVi~i~~~~ps~~~I~~na~~laryA~icq~~GLVPIVEPEVli~g~h~~~~~~~vt~~vl~~v~~~l~ 203 (348)
T PF00274_consen 124 YAFGARFAKWRSVIKIGDGTPSEAAIKANAHQLARYAAICQEAGLVPIVEPEVLIDGDHDIERCAEVTEAVLAAVFKALN 203 (348)
T ss_dssp HHTTEEEEEEEEEEESBTTBS-HHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEESSSSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccceeeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHhccCccccccccccCCCchHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 161 DHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 161 ~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
+|+|+|||||||||||+||.+|+.++|+++||++||++|+||||++|
T Consensus 204 ~~~V~Leg~llKpnmv~pG~~~~~~~~~~~vA~~T~~~l~~~vP~aV 250 (348)
T PF00274_consen 204 DHGVMLEGTLLKPNMVTPGKDHPKKASPEEVAEATVRALRRTVPAAV 250 (348)
T ss_dssp HTTEEGGGEEEEEB-S---TTSSS---HHHHHHHHHHHHHHHSBTTS
T ss_pred cCEEEeccccccccceeecccCCCCCCHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999997
No 9
>COG3588 Fructose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-81 Score=558.97 Aligned_cols=206 Identities=49% Similarity=0.727 Sum_probs=202.9
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
|||+||+||.++++||||||||||||+|+.++|.|+.++++++||+||||||||+.|++|+|+|++|+|||+|++||++|
T Consensus 48 ~Re~l~~s~~~~~~yI~GaILfeeTm~q~~~~g~p~~~l~~~kgivPgiKvDkGl~~~~g~~~ek~t~gLd~L~~R~~~~ 127 (332)
T COG3588 48 MRERLFTSPDFMEDYILGAILFEETMDQKADGGYPADYLWKEKGIVPGIKVDKGLKPLAGVQLEKPTEGLDGLLKRAKEY 127 (332)
T ss_pred HHHHHhcCcccchhhhhheehhHHHHHHhhcCCCCHHHHHHhcCCCcceeecCCcccccCCccccCCcCHHHHHHHHHHh
Confidence 79999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALN 160 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~ 160 (207)
+.+||||||||+||+|+++.||..+|.+|++.|||||++||++||||||||||+||||||+++|++||+.+|+.+|++|+
T Consensus 128 ~~~GarfaKwRsvI~~~~~~ps~~~I~~nv~~la~yAa~cq~aGlVPIVEPEV~mdg~~d~~~~eeVtk~~L~k~~~~L~ 207 (332)
T COG3588 128 HIFGARFAKWRSVIKIADGIPSWGGIKANVHQLAEYAALCQAAGLVPIVEPEVDIDGDHDKARSEEVTKAELRKLLNALN 207 (332)
T ss_pred hhccchHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHCCCcccccceeeccCcccHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 161 DHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 161 ~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
+..|+|+|++||||||++|+.|..+ ||++||+.|+.+|++|||++|
T Consensus 208 ~~~vvm~g~~lk~smv~~g~~~~~~-s~~~vae~tl~~~~~tvP~~v 253 (332)
T COG3588 208 EERVVMLGLILKTSMVISGKKSREA-SPDEVAEDTLYSLLSTVPAVV 253 (332)
T ss_pred hhHhHhhcccccchhcccccccccc-chHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999998765 999999999999999999986
No 10
>PRK05377 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=100.00 E-value=1.2e-58 Score=411.47 Aligned_cols=174 Identities=32% Similarity=0.412 Sum_probs=158.9
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhh-CCceeeEecCCCcccCC-CCCCCCCCCCchHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQ-RGIIPGIKVDKGVVPLM-GSEDECTTQGLDDLGARCA 78 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~-~gIvpgIKvDkGl~pl~-g~~~e~~t~GLD~L~~R~~ 78 (207)
||++|||||.|+++||||||||||||+| +.||+||+++||+ +|||||||||||+.|++ |.+.|++|+|||+|++||+
T Consensus 54 ~R~~l~tsp~f~~~~I~GaILFEeTl~q-~~dG~p~~d~L~e~kGIVPgIKVDKGl~~l~~gvql~k~~~GLD~Ll~R~~ 132 (296)
T PRK05377 54 MRTRIITSPAFTGDKILGAILFEQTMDR-EIEGKPTADYLWEKKGVVPFLKVDKGLAEEANGVQLMKPIPNLDDLLDRAV 132 (296)
T ss_pred HhhccccCccccccceEEEEcchHhhcC-ccCCcCHHHHHHhcCCcceEEEecCCcccCCCCccccccCCCHHHHHHHHH
Confidence 8999999977899999999999999999 7899999999998 99999999999999998 7788999999999999999
Q ss_pred HHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHH
Q psy354 79 QYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKA 158 (207)
Q Consensus 79 ~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~ 158 (207)
+| |++||||||||+|+ +..+|.+|++.|||||++||++||||||||||+|||. |-+.|.++..+.+.+-+++
T Consensus 133 ~y---~~~GaKwRsViki~----~~~~I~~na~qlaryA~~~q~~GLVPIVEPEVli~~~-~k~~~e~~l~~~i~~~l~~ 204 (296)
T PRK05377 133 EK---GIFGTKMRSVIKEA----NEQGIAAVVAQQFEVAKQILAAGLVPIIEPEVDINSP-DKAEAEAILKAEILKQLDA 204 (296)
T ss_pred Hh---CCCccceeeeecCC----CHHHHHHHHHHHHHHHHHHHHcCCCceECCeECCCCc-CHHHHHHHHHHHHHHHHhh
Confidence 87 66679999999996 4789999999999999999999999999999999999 7888999999999999999
Q ss_pred HH-hCCccccccccc-cccccCCCCCC
Q psy354 159 LN-DHHVYLEGTLLK-PNMVTAGQSSP 183 (207)
Q Consensus 159 L~-~~~V~leG~lLK-pnMV~pG~~~~ 183 (207)
|. ++.|.|..+|-. +|+..+=.++|
T Consensus 205 l~~~~~vmlkltlp~~~~~Y~~l~~hp 231 (296)
T PRK05377 205 LPEDQQVMLKLTIPTEANLYKELIDHP 231 (296)
T ss_pred CCCCCeEEEEEecCCCCCcchhhccCC
Confidence 98 688999999874 55555544444
No 11
>cd00949 FBP_aldolase_I_bact Fructose-1.6-bisphosphate aldolase found in gram +/- bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). The enzyme is member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=100.00 E-value=4.3e-53 Score=375.40 Aligned_cols=173 Identities=28% Similarity=0.361 Sum_probs=138.6
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCC-ceeeEecCCCcccCC-CCCCCCCCCCchHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRG-IIPGIKVDKGVVPLM-GSEDECTTQGLDDLGARCA 78 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~g-IvpgIKvDkGl~pl~-g~~~e~~t~GLD~L~~R~~ 78 (207)
||++|||||.|+++||||||||||||+|+ .||+||+++||++| ||||||||||+.|++ |.+.|++|+|||+|++||+
T Consensus 51 ~R~~lftsp~f~~~~IsGaILFEeTl~q~-~dG~p~~d~L~e~ggIVPgIKVDKGl~~la~Ge~lmk~~~GLD~Ll~R~~ 129 (292)
T cd00949 51 MRTRIITSPAFDGDKILGAILFEQTMDRE-IEGKPTADYLWEKKQIVPFLKVDKGLAEEKNGVQLMKPIPNLDELLMRAK 129 (292)
T ss_pred HhhccccCccccccceEEEEccHHhhcCc-cCCcCHHHHHHhcCCeeeEEEecCCcccCCCCcccCcCCccHHHHHHHHH
Confidence 89999999767999999999999999997 79999999999886 999999999999998 7788889999999999998
Q ss_pred HHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHH
Q psy354 79 QYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKA 158 (207)
Q Consensus 79 ~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~ 158 (207)
+| |++||||||||+|++. ||+.+|++|++.| |++||++||||||||||+||....-+ |.+.-..-+..-.++
T Consensus 130 ~~---~~~GaKwRsVIki~~~-~~i~aiv~qq~~l---A~~cq~~GLVPIVEPEVli~~~~k~~-~e~~l~~~i~~~l~~ 201 (292)
T cd00949 130 EK---GVFGTKMRSVIKEANP-KGIAAVVDQQFEL---AKQILSHGLVPIIEPEVDIHSADKAK-CEAILKAEILKHLDK 201 (292)
T ss_pred Hh---CCCCcceeeEeecCCc-chHHHHHHHHHHH---HHHHHHcCCCceECceECCCCccHHH-HHHHHHHHHHHHHhc
Confidence 77 5666999999999976 9999999999887 79999999999999999999876543 444333323333344
Q ss_pred HH-hCCcccccccc-ccccccCCCCC
Q psy354 159 LN-DHHVYLEGTLL-KPNMVTAGQSS 182 (207)
Q Consensus 159 L~-~~~V~leG~lL-KpnMV~pG~~~ 182 (207)
|. ++.|.|.=+|= ++|+..+=.++
T Consensus 202 l~~~~~vmlkltlp~~~~~y~~l~~h 227 (292)
T cd00949 202 LPEGQQVMLKLTLPTEANFYSELIEH 227 (292)
T ss_pred CCCCCeEEEEEecCCCcChhHHHhcC
Confidence 42 44566654431 34444333333
No 12
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=60.51 E-value=82 Score=24.83 Aligned_cols=115 Identities=15% Similarity=0.107 Sum_probs=61.9
Q ss_pred chHHHHhhCCce-eeEecCCCcccCCC----CCCCCCCCCchHHHHHHHHHhHcCCccceeeeee-ecCCCCccHHHHHH
Q psy354 35 PFVELLKQRGII-PGIKVDKGVVPLMG----SEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVL-KINVNTPSYQAILE 108 (207)
Q Consensus 35 ~~~~~L~~~gIv-pgIKvDkGl~pl~g----~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi-~i~~~~Ps~~aI~~ 108 (207)
.+.+.+++.|+- +++-.......... ...+ .-..++.+.+.+...+++|++.-..-+.- ..............
T Consensus 31 ~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~ 109 (213)
T PF01261_consen 31 ELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWER 109 (213)
T ss_dssp HHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHH
Confidence 356778899886 33333222221100 0111 12236666666666667786552222110 01123344566777
Q ss_pred HHHHHHHHHHHHHhCCceeeeccccCCCCCCc--hHHHHHHHHH
Q psy354 109 NANVLARYASICQANRIVPIVEPEVLPDGPHD--LERAQKVTET 150 (207)
Q Consensus 109 na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~--i~~c~~vt~~ 150 (207)
.+..|.+.++++.+.|+...+||.--...+.. ++...++-++
T Consensus 110 ~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~ 153 (213)
T PF01261_consen 110 LAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEE 153 (213)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhh
Confidence 77788888899999999999999776544322 2444444443
No 13
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=54.07 E-value=1.5 Score=30.56 Aligned_cols=20 Identities=45% Similarity=0.695 Sum_probs=16.7
Q ss_pred HHHHHHHh----CCceeeeccccC
Q psy354 115 RYASICQA----NRIVPIVEPEVL 134 (207)
Q Consensus 115 ryA~icQ~----~GLVPIVEPEVl 134 (207)
|||-||++ ||++|..|++-+
T Consensus 20 r~aLIC~~C~~hNGla~~~~~~~i 43 (54)
T PF10058_consen 20 RYALICSKCFSHNGLAPKEEFEEI 43 (54)
T ss_pred ceeEECcccchhhcccccccCCce
Confidence 88999998 999997777643
No 14
>PF08742 C8: C8 domain; InterPro: IPR014853 The proteins in this entry contained a domain rich in positionally conserved cysteine residues. Most proteins contains 7 or 8 cysteine residues. The domain is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often found on proteins containing IPR001846 from INTERPRO and IPR002919 from INTERPRO.
Probab=53.04 E-value=11 Score=26.53 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhCCcee
Q psy354 110 ANVLARYASICQANRIVP 127 (207)
Q Consensus 110 a~~LAryA~icQ~~GLVP 127 (207)
..+|+-||+.||..|+.+
T Consensus 47 C~~l~~Ya~~C~~~g~~~ 64 (74)
T PF08742_consen 47 CEALSAYARECQRAGICV 64 (74)
T ss_pred hHHHHHHHHHHHHCcCCC
Confidence 789999999999999864
No 15
>smart00832 C8 C8 domain. This domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin.
Probab=51.19 E-value=12 Score=27.21 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhCCce
Q psy354 110 ANVLARYASICQANRIV 126 (207)
Q Consensus 110 a~~LAryA~icQ~~GLV 126 (207)
...|+-||+.|+++|+.
T Consensus 49 C~al~aYa~aC~~~Gv~ 65 (76)
T smart00832 49 CDALAAYAAACAEAGVC 65 (76)
T ss_pred CHHHHHHHHHHHHCcCc
Confidence 78999999999999964
No 16
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=50.02 E-value=1.1e+02 Score=27.13 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCceeeeccccCCCC-CCchHHHHHHHHHHHHHHHHHHHhCCccccccccccccccCCCCCCCCCCH
Q psy354 110 ANVLARYASICQANRIVPIVEPEVLPDG-PHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQSSPKKYSA 188 (207)
Q Consensus 110 a~~LAryA~icQ~~GLVPIVEPEVl~dg-~H~i~~c~~vt~~vL~~v~~~L~~~~V~leG~lLKpnMV~pG~~~~~~~~~ 188 (207)
.+.+.+..+.+.+.|+=..+-+|-++|| .|+.+...++.+++.. +-...|+| .|.....+|
T Consensus 118 ~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~g~~~i~l-------------~DT~G~~~P 179 (273)
T cd07941 118 LAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAE-----AGADWLVL-------------CDTNGGTLP 179 (273)
T ss_pred HHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHh-----CCCCEEEE-------------ecCCCCCCH
Confidence 3344555666788999777788888887 7888776666665432 11222333 355567899
Q ss_pred HHHHHHHHHHhhccCC
Q psy354 189 QEIAQATVQALQRTVP 204 (207)
Q Consensus 189 e~vA~~Tv~~l~rtvP 204 (207)
++|++. ++.+++.+|
T Consensus 180 ~~v~~l-v~~l~~~~~ 194 (273)
T cd07941 180 HEIAEI-VKEVRERLP 194 (273)
T ss_pred HHHHHH-HHHHHHhCC
Confidence 998764 566766666
No 17
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=48.68 E-value=78 Score=28.46 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=54.1
Q ss_pred ceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHHhHcCCccceee-eeeecCCCCccHHHHHHHHHHHHHHHHHHHhC
Q psy354 45 IIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQYKKDGCHFAKWR-CVLKINVNTPSYQAILENANVLARYASICQAN 123 (207)
Q Consensus 45 IvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR-~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~ 123 (207)
.|.|+-.|.|...-.+.+| .-.|=+.+++...++...+ |. .+...++-......+.+..+.+++..+-.-+.
T Consensus 38 ~iiGvP~d~g~~~n~~r~G--~~~gP~aiR~a~~~~~~~~-----~~~~i~D~Gdv~~~~~~~~~~~~~i~~~v~~~~~~ 110 (307)
T TIGR01227 38 ALIGFPLDKGVIRNKGRRG--ARHGPSAIRQALAHLGDWH-----VSELLYDLGDIVIHGDDLEDTQHEIAQTAAALLAD 110 (307)
T ss_pred EEEeeccCccccCCCCCcC--hhHCHHHHHHHHHhccccC-----CCCEEEeCCCCccCchhHHHHHHHHHHHHHHHHhc
Confidence 4678888888752112222 1257777776654332111 11 25555543222234677778888777777789
Q ss_pred CceeeeccccCCCCCCchHHHH
Q psy354 124 RIVPIVEPEVLPDGPHDLERAQ 145 (207)
Q Consensus 124 GLVPIVEPEVl~dg~H~i~~c~ 145 (207)
|.+||+ +-|||++.-..
T Consensus 111 g~~Pi~-----lGGdHsit~~~ 127 (307)
T TIGR01227 111 HRVPVI-----LGGGHSIAYAT 127 (307)
T ss_pred CCeEEE-----ECCcchhHHHH
Confidence 999976 99999987653
No 18
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=43.73 E-value=90 Score=28.47 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhCCceee-eccccCCCC
Q psy354 108 ENANVLARYASICQANRIVPI-VEPEVLPDG 137 (207)
Q Consensus 108 ~na~~LAryA~icQ~~GLVPI-VEPEVl~dg 137 (207)
.|++.|+..+....+.|..|. +-.-+..-|
T Consensus 248 Dn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg 278 (321)
T TIGR03821 248 DNADTLAALSERLFDAGVLPYYLHLLDKVQG 278 (321)
T ss_pred CCHHHHHHHHHHHHHcCCeeCcccccCCCCC
Confidence 456666666666677777776 444333334
No 19
>PRK13774 formimidoylglutamase; Provisional
Probab=38.72 E-value=1.1e+02 Score=27.76 Aligned_cols=87 Identities=23% Similarity=0.258 Sum_probs=49.7
Q ss_pred ceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHHhHcCCccceee---eeeecCCCCccHHHHHHHHHHHHHHHHHHH
Q psy354 45 IIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQYKKDGCHFAKWR---CVLKINVNTPSYQAILENANVLARYASICQ 121 (207)
Q Consensus 45 IvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR---~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ 121 (207)
.|.|+=.|.|...-.+.+| .-.|=+.+++... ++..|+ .+...++-......+.++.+.++.-.+-.-
T Consensus 47 ~iiGvP~d~g~~~n~~r~G--~~~gP~aIR~as~-------~l~~~~~~~~i~D~Gdv~~~~~~~~~~~~~i~~~v~~i~ 117 (311)
T PRK13774 47 GILGYAVDKGVALNKGRIG--AKEGPDAIKQAFA-------GLPDLNQCETLVDYGNVYHDHEELIDTQKEFAMLAAKSI 117 (311)
T ss_pred EEEEecccccccCCCCCcC--HhHhHHHHHHHhh-------cCCcccccCeEEECCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 3667777777632111112 1245566654433 233333 344555432233346677777777666677
Q ss_pred hCCceeeeccccCCCCCCchHHHH
Q psy354 122 ANRIVPIVEPEVLPDGPHDLERAQ 145 (207)
Q Consensus 122 ~~GLVPIVEPEVl~dg~H~i~~c~ 145 (207)
++|..||+ +-|||+|.-..
T Consensus 118 ~~g~~piv-----lGGdHsit~g~ 136 (311)
T PRK13774 118 ANHRQTFL-----LGGGHDIAYAQ 136 (311)
T ss_pred HCCCeEEE-----EcCchHHHHHH
Confidence 79999965 99999997653
No 20
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=36.65 E-value=3.2e+02 Score=25.79 Aligned_cols=116 Identities=21% Similarity=0.240 Sum_probs=71.8
Q ss_pred CchHHHHH--HHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCC---CCCCchHH
Q psy354 69 GLDDLGAR--CAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLP---DGPHDLER 143 (207)
Q Consensus 69 GLD~L~~R--~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~---dg~H~i~~ 143 (207)
-|++|+.- .++.+++||.+.|-=--++.++ .|-+ =..+..-+.|..+-|+++||-=++||=+-- ...++.+-
T Consensus 102 Rl~~ll~~~s~~rike~GadavK~Llyy~pD~-~~ei--n~~k~a~vervg~ec~a~dipf~lE~ltYd~~~~~~~~~~y 178 (325)
T TIGR01232 102 RLPDCLVEWSAKRLKEQGANAVKFLLYYDVDD-AEEI--NIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEF 178 (325)
T ss_pred cCccccccccHHHHHHhCCCeEEEEEEeCCCC-ChHH--HHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCCCCCcHHH
Confidence 45655333 4556899999999755554442 1222 223556788999999999999999986652 23455553
Q ss_pred HHHH-HHHHHHHHHHHHHh--CCccccccccccccccC-----CCCC-CCCCCHHHHHH
Q psy354 144 AQKV-TETVLAAVYKALND--HHVYLEGTLLKPNMVTA-----GQSS-PKKYSAQEIAQ 193 (207)
Q Consensus 144 c~~v-t~~vL~~v~~~L~~--~~V~leG~lLKpnMV~p-----G~~~-~~~~~~e~vA~ 193 (207)
+++ -++|+. -.+.+.+ .||++ ||--|-.. |... ..-+|.++.+.
T Consensus 179 -ak~kP~~V~~-a~kefs~~~~gvDV----lKvEvPvn~~~veG~~~~e~~yt~~eA~~ 231 (325)
T TIGR01232 179 -AKVKPRKVNE-AMKLFSEPRFNVDV----LKVEVPVNVKYVEGFAEGEVVYTKEEAAQ 231 (325)
T ss_pred -HHhChHHHHH-HHHHhccCCCCCcE----EEEecccccccccccCcccccccHHHHHH
Confidence 445 666665 5788888 67764 67554333 3232 23445555433
No 21
>PRK13776 formimidoylglutamase; Provisional
Probab=35.19 E-value=1.3e+02 Score=27.33 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=51.2
Q ss_pred ceeeEecCCCccc---CCCCCCCCCCCCchHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHH
Q psy354 45 IIPGIKVDKGVVP---LMGSEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQ 121 (207)
Q Consensus 45 IvpgIKvDkGl~p---l~g~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ 121 (207)
.|.|+-.|.|..+ -+|+. .|=+.+++....+. + +..+ .+...+|-......+.+....++.-.+-..
T Consensus 45 ~iiGvP~d~g~~~n~~r~G~r-----~gP~aiR~a~~~~~--~--~~~~-~i~D~Gdv~~~~~~~~~~~~~i~~~v~~i~ 114 (318)
T PRK13776 45 ALLGFACDAGVRRNQGRVGAK-----HGPDAIRRALANLP--W--HGGR-AVVDAGDVVCEDDDLEAAQSRYAQRVHDLL 114 (318)
T ss_pred EEEeeccccccCCCCCCcChh-----HCHHHHHHHhhccc--c--cCCC-eEEECCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 4678888888743 23332 46777776543321 1 1111 245555432222336666677776666667
Q ss_pred hCCceeeeccccCCCCCCchHHHH
Q psy354 122 ANRIVPIVEPEVLPDGPHDLERAQ 145 (207)
Q Consensus 122 ~~GLVPIVEPEVl~dg~H~i~~c~ 145 (207)
+.|.+||+ +-|||+|.-..
T Consensus 115 ~~g~~Pi~-----lGGdHsit~g~ 133 (318)
T PRK13776 115 DRGHLPIG-----LGGGHEIAWAS 133 (318)
T ss_pred hCCCeEEE-----EcCchHHHHHh
Confidence 79999965 99999998753
No 22
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=34.47 E-value=2e+02 Score=24.22 Aligned_cols=87 Identities=15% Similarity=0.049 Sum_probs=52.1
Q ss_pred ceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCC
Q psy354 45 IIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANR 124 (207)
Q Consensus 45 IvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~G 124 (207)
+-..||||+|..+- .-|-.+ +.+..+.+++.+ ...-+.+.+........+.....++...+...+..+++.|
T Consensus 117 ~~v~lkvdtG~~~~--R~G~~~-~~~~~~~~~i~~-----~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (222)
T cd00635 117 LDVLVQVNIGGEES--KSGVAP-EELEELLEEIAA-----LPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKG 188 (222)
T ss_pred CcEEEEEecCCCCC--CCCCCH-HHHHHHHHHHHc-----CCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 44589999996322 112222 124445444432 1223455555554344455567888888888888888875
Q ss_pred -ceeeeccccCCCCCCchH
Q psy354 125 -IVPIVEPEVLPDGPHDLE 142 (207)
Q Consensus 125 -LVPIVEPEVl~dg~H~i~ 142 (207)
+-+ ++|.+-|..|.+
T Consensus 189 g~~~---~~is~G~t~~~~ 204 (222)
T cd00635 189 GVNL---KELSMGMSGDFE 204 (222)
T ss_pred CCCC---CEEECcccHhHH
Confidence 522 678888888875
No 23
>PRK13773 formimidoylglutamase; Provisional
Probab=33.50 E-value=1e+02 Score=28.02 Aligned_cols=86 Identities=20% Similarity=0.222 Sum_probs=51.0
Q ss_pred ceeeEecCCCcc---cCCCCCCCCCCCCchHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHH
Q psy354 45 IIPGIKVDKGVV---PLMGSEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQ 121 (207)
Q Consensus 45 IvpgIKvDkGl~---pl~g~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ 121 (207)
.|.|+-.|.|.. .-+|+ -.|=+.+++-...+.. +.-|+ +...++-......+.++.+.++.-.+-..
T Consensus 47 ~iiGvP~d~g~~~n~~r~G~-----~~gP~aIR~a~~~~~~----~~~~~-i~D~Gdv~~~~~~~~~~~~~i~~~v~~~~ 116 (324)
T PRK13773 47 VLLGFASDEGVRRNKGRVGA-----AAGPDALRGALGSLAL----HEPRR-VYDAGTVTVPGGDLEAGQERLGDAVSALL 116 (324)
T ss_pred EEEEeccccCCCCCCCCCCh-----hHCHHHHHHHHhhchh----ccCCe-EEeCCCcCCCCcCHHHHHHHHHHHHHHHH
Confidence 367999999984 33343 2466667654433221 11222 44444322111235566677776666677
Q ss_pred hCCceeeeccccCCCCCCchHHHH
Q psy354 122 ANRIVPIVEPEVLPDGPHDLERAQ 145 (207)
Q Consensus 122 ~~GLVPIVEPEVl~dg~H~i~~c~ 145 (207)
+.|.+||+ +-|||+|.-..
T Consensus 117 ~~g~~Piv-----LGGdHsit~g~ 135 (324)
T PRK13773 117 DAGHLPVV-----LGGGHETAFGS 135 (324)
T ss_pred HCCCeeEE-----ECCchHHHHHh
Confidence 79999954 99999998653
No 24
>PRK13772 formimidoylglutamase; Provisional
Probab=31.81 E-value=1.3e+02 Score=27.29 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=49.7
Q ss_pred eeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCc
Q psy354 46 IPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRI 125 (207)
Q Consensus 46 vpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GL 125 (207)
|.|+--|.|...=.+.+| .-.|=+.+++....+...+. ..+...+|-......+.+....++...+-..+.|.
T Consensus 45 ilGvP~D~g~~~n~~r~G--ar~gP~aIR~as~~l~~~~~-----~~i~D~Gdv~~~~~~~~~~~~~i~~~v~~~~~~g~ 117 (314)
T PRK13772 45 LLGFACDAGVRRNQGRAG--AAHGPREIRRALAGVPAHGL-----PALADAGDVVCDDGDLESAQAALAEVVAEVLAAGA 117 (314)
T ss_pred EEEeecCcccCcCCCCch--HhHhHHHHHHHHhcCCcCCC-----CeEEECCCCCcCCcCHHHHHHHHHHHHHHHHHCCC
Confidence 667777777631111122 23577777766543322210 12444443211122345566667766677778999
Q ss_pred eeeeccccCCCCCCchHHHH
Q psy354 126 VPIVEPEVLPDGPHDLERAQ 145 (207)
Q Consensus 126 VPIVEPEVl~dg~H~i~~c~ 145 (207)
.||+ +-|||+|.-..
T Consensus 118 ~Piv-----lGGdHsit~g~ 132 (314)
T PRK13772 118 RPLV-----LGGGHEVAWGT 132 (314)
T ss_pred EEEE-----EcCchHHHHhh
Confidence 9965 99999998653
No 25
>KOG2311|consensus
Probab=31.11 E-value=34 Score=34.45 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=43.3
Q ss_pred ccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCC-CCCCCCCCCCchHHHHHH
Q psy354 3 KLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLM-GSEDECTTQGLDDLGARC 77 (207)
Q Consensus 3 ell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~-g~~~e~~t~GLD~L~~R~ 77 (207)
++++..+..-...++||.|+|+|-.....==..+..+|+ =++..|++-+| |.-||.+++||-.-+++.
T Consensus 149 dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL~-------~~I~iGlk~~pAGRiGe~ps~~Lse~l~kl 217 (679)
T KOG2311|consen 149 DLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFLR-------GQINIGLKTHPAGRIGEQPSIGLSETLQKL 217 (679)
T ss_pred heeeccCCCCceEEEEEEEecCcEeccceEEEeecccee-------eEEeeccccccCccccCCcchHHHHHHHHh
Confidence 356666444456799999999987653221112223443 23444555566 888999999998777664
No 26
>PRK13775 formimidoylglutamase; Provisional
Probab=30.22 E-value=1.3e+02 Score=27.49 Aligned_cols=86 Identities=21% Similarity=0.307 Sum_probs=50.7
Q ss_pred ceeeEecCCCcc---cCCCCCCCCCCCCchHHHHHHHHHh-HcCCccceeeeeeecCCCC-ccHHHHHHHHHHHHHHHHH
Q psy354 45 IIPGIKVDKGVV---PLMGSEDECTTQGLDDLGARCAQYK-KDGCHFAKWRCVLKINVNT-PSYQAILENANVLARYASI 119 (207)
Q Consensus 45 IvpgIKvDkGl~---pl~g~~~e~~t~GLD~L~~R~~~y~-~~Ga~FaKWR~Vi~i~~~~-Ps~~aI~~na~~LAryA~i 119 (207)
.|.|+--|.|.. .-+|+ -.|=+.+++....|. ..|. . ..+...+|-. |. ....+....++...+-
T Consensus 49 ~iiGvP~d~g~~~n~~r~Ga-----~~gP~aIR~~l~~~~~~~~~---~-~~i~D~Gdv~~~~-~~~~~~~~~l~~~v~~ 118 (328)
T PRK13775 49 ALIGFKSDKGVYINNGRVGA-----VESPAAIRTQLAKFPWHLGN---Q-VMVYDVGNIDGPN-RSLEQLQNSLSKAIKR 118 (328)
T ss_pred EEEEeccccccCCCCCCcCh-----hHhHHHHHHHHhccccccCC---C-CEEEeCCCcCCCC-cCHHHHHHHHHHHHHH
Confidence 377888888874 33343 357777877654331 0110 1 1233444321 21 1234556666666666
Q ss_pred HHhCCceeeeccccCCCCCCchHHHH
Q psy354 120 CQANRIVPIVEPEVLPDGPHDLERAQ 145 (207)
Q Consensus 120 cQ~~GLVPIVEPEVl~dg~H~i~~c~ 145 (207)
..++|..||+ +-|||+|.-..
T Consensus 119 ~~~~g~~Piv-----lGGdHsit~g~ 139 (328)
T PRK13775 119 MCDLNLKPIV-----LGGGHETAYGH 139 (328)
T ss_pred HHhCCCeEEE-----EcCcHHHHHHH
Confidence 7779999965 99999998754
No 27
>cd00949 FBP_aldolase_I_bact Fructose-1.6-bisphosphate aldolase found in gram +/- bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). The enzyme is member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=28.84 E-value=43 Score=31.00 Aligned_cols=18 Identities=6% Similarity=-0.051 Sum_probs=12.1
Q ss_pred CCCCCCCchHHHHHHHHH
Q psy354 63 DECTTQGLDDLGARCAQY 80 (207)
Q Consensus 63 ~e~~t~GLD~L~~R~~~y 80 (207)
||+.|++++||.++|+++
T Consensus 111 Ge~lmk~~~GLD~Ll~R~ 128 (292)
T cd00949 111 GVQLMKPIPNLDELLMRA 128 (292)
T ss_pred CcccCcCCccHHHHHHHH
Confidence 466677777777777644
No 28
>PF01386 Ribosomal_L25p: Ribosomal L25p family; InterPro: IPR020055 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry models the short-form of the ribosomal L25 protein. The long-form has homology to the general stress protein Ctc of Bacillus subtilis, a mesophile, and ribosomal protein TL5 of Thermus thermophilus, a thermophile. Ribosomal protein L25 of Escherichia coli and Haemophilus influenzae appear to be orthologous but consist only of the N-terminal half of Ctc and TL5. Both short (L25-like) and full-length (CTC-like) members of this family bind the E-loop of bacterial 5S rRNA.; GO: 0003735 structural constituent of ribosome, 0008097 5S rRNA binding, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2HGQ_Y 2HGJ_Y 2Y19_Z 2WRL_Z 3KIT_Z 2WH2_Z 2WDN_Z 3V25_Z 3HUZ_Z 3KIY_Z ....
Probab=28.79 E-value=54 Score=24.34 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=24.2
Q ss_pred cccCCCchHHHHhhCCceeeEecCCCcccC
Q psy354 29 KADDGTPFVELLKQRGIIPGIKVDKGVVPL 58 (207)
Q Consensus 29 ~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl 58 (207)
++..|+.-...|++.|.|||+=-.+|..+.
T Consensus 6 R~~~gk~~~r~LR~~G~iPaviYG~~~~~~ 35 (88)
T PF01386_consen 6 REETGKSAARRLRREGKIPAVIYGKGKESI 35 (88)
T ss_dssp SSSTSSSHHHHHHHTTEEEEEEEESSEEEE
T ss_pred cCcCCCHHHHHHHHcCCceEEEECCCCCCE
Confidence 455688899999999999999777775543
No 29
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=28.38 E-value=4.5e+02 Score=24.56 Aligned_cols=107 Identities=20% Similarity=0.201 Sum_probs=71.0
Q ss_pred CCCCCCCchHHHHH--HHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCC-CCCC
Q psy354 63 DECTTQGLDDLGAR--CAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLP-DGPH 139 (207)
Q Consensus 63 ~e~~t~GLD~L~~R--~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~-dg~H 139 (207)
+-+++.-|-+|... +++.++.|+.--|.---+.+++ | + .=..|...+-|.-+.|-+++|.=|+||=+.- ++..
T Consensus 101 d~t~~~rlp~l~~~isa~riK~~G~~avK~Lvy~~~D~--~-e-~neqk~a~ierigsec~aedi~f~lE~ltyd~~~~d 176 (306)
T COG3684 101 DNTIPVRLPDLLRKISAKRIKEDGGDAVKFLVYYRSDE--D-E-INEQKLAYIERIGSECHAEDLPFFLEPLTYDPRIGD 176 (306)
T ss_pred CCCCCccchhhhhhhCHHHHHHhcccceEEEEEEcCCc--h-H-HhHHHHHHHHHHHHHhhhcCCceeEeeeecCCCCCC
Confidence 34455556666554 3567899999888765555543 4 2 2245666788999999999999999997744 4444
Q ss_pred chHHHHHHH-HHHHHHHHHHHHhCCccccccccccccccCC
Q psy354 140 DLERAQKVT-ETVLAAVYKALNDHHVYLEGTLLKPNMVTAG 179 (207)
Q Consensus 140 ~i~~c~~vt-~~vL~~v~~~L~~~~V~leG~lLKpnMV~pG 179 (207)
. +..+.+- .+|. +-.+.+.+-||++ ||--|-.-|
T Consensus 177 ~-~eyak~kp~kV~-~a~k~fsd~Gadv----lKvevPvyv 211 (306)
T COG3684 177 K-EEYAKRKPQKVI-EAMKEFSDSGADV----LKVEVPVYV 211 (306)
T ss_pred h-HHHHhhchHHHH-HHHHHhccCCCce----EEeecceec
Confidence 4 4445555 5554 4578888888764 776665543
No 30
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=27.73 E-value=1.9e+02 Score=25.40 Aligned_cols=89 Identities=16% Similarity=0.127 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHH
Q psy354 71 DDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTET 150 (207)
Q Consensus 71 D~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~ 150 (207)
..+...+.+..+.||..-+.|.-+ +.. ... +....+++-..+|++.|+.=||.. ..+|.|- +.|... .
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~~~--g~~--~~~---~~~~~~~~v~~~~~~~g~pl~vi~--~~~g~~~-e~~~~~--~ 160 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHVNV--GSE--TEA---EMLEDLGEVAEECEEWGMPLLAMM--YPRGPGI-KNEYDP--E 160 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEEec--CCh--hHH---HHHHHHHHHHHHHHHcCCcEEEEE--ecCCCcc-CCCccH--H
Confidence 444555666678999877765433 321 122 345566666789999998666642 4556662 444321 2
Q ss_pred HHHHHHHHHHhCCcccccccccccc
Q psy354 151 VLAAVYKALNDHHVYLEGTLLKPNM 175 (207)
Q Consensus 151 vL~~v~~~L~~~~V~leG~lLKpnM 175 (207)
.+....+...+.|++ ++|+++
T Consensus 161 ~i~~a~~~a~e~GAD----~vKt~~ 181 (267)
T PRK07226 161 VVAHAARVAAELGAD----IVKTNY 181 (267)
T ss_pred HHHHHHHHHHHHCCC----EEeeCC
Confidence 223333444455654 357774
No 31
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=27.64 E-value=5.3e+02 Score=24.34 Aligned_cols=113 Identities=22% Similarity=0.242 Sum_probs=71.2
Q ss_pred chHHHH--HHHHHhHcCCccceeeeeeecCCCCccHHHHH-HHHHHHHHHHHHHHhCCceeeeccccCC---CCCCchHH
Q psy354 70 LDDLGA--RCAQYKKDGCHFAKWRCVLKINVNTPSYQAIL-ENANVLARYASICQANRIVPIVEPEVLP---DGPHDLER 143 (207)
Q Consensus 70 LD~L~~--R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~-~na~~LAryA~icQ~~GLVPIVEPEVl~---dg~H~i~~ 143 (207)
|++|.. -.++.+++||.+.|-=--++.++. | .|+ .+..-+.|..+-|+++||-=++||=+-. +..++. .
T Consensus 102 l~~ll~~wS~~rike~GadavK~Llyy~pD~~-~---~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~~d~~~~-~ 176 (324)
T PRK12399 102 LPDCLDDWSAKRIKEEGADAVKFLLYYDVDEP-D---EINEQKKAYIERIGSECVAEDIPFFLEILTYDEKIADNGSV-E 176 (324)
T ss_pred cccccchhhHHHHHHhCCCeEEEEEEECCCCC-H---HHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCcccccccH-H
Confidence 555544 234567999999997655544432 2 233 4455678999999999999999997744 234444 4
Q ss_pred HHHH-HHHHHHHHHHHHHh--CCcccccccccc------ccccCCCCC-CCCCCHHHHHH
Q psy354 144 AQKV-TETVLAAVYKALND--HHVYLEGTLLKP------NMVTAGQSS-PKKYSAQEIAQ 193 (207)
Q Consensus 144 c~~v-t~~vL~~v~~~L~~--~~V~leG~lLKp------nMV~pG~~~-~~~~~~e~vA~ 193 (207)
.+++ -++|+. -.+.+.+ .||++ ||- |+| -|... ..-+|.+|.+.
T Consensus 177 yak~kP~~V~~-a~kefs~~~~gvDV----lKvEvPvn~~~v-eG~~~~e~~yt~~eA~~ 230 (324)
T PRK12399 177 YAKVKPHKVNE-AMKVFSKPRFGVDV----LKVEVPVNMKYV-EGFAEGEVVYTKEEAAQ 230 (324)
T ss_pred HHhhChHHHHH-HHHHhccCCCCCcE----EEEecccccccc-cccCcccccccHHHHHH
Confidence 4666 667666 5788876 67764 675 334 34332 23456666544
No 32
>PF02257 RFX_DNA_binding: RFX DNA-binding domain; InterPro: IPR003150 RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DP7_P 2KW3_A.
Probab=27.58 E-value=56 Score=24.83 Aligned_cols=19 Identities=37% Similarity=0.810 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhCCceee
Q psy354 110 ANVLARYASICQANRIVPI 128 (207)
Q Consensus 110 a~~LAryA~icQ~~GLVPI 128 (207)
....+.|...|+++++-|+
T Consensus 27 ~~lY~~Y~~~C~~~~~~pl 45 (85)
T PF02257_consen 27 SDLYAHYLSFCEKNGIKPL 45 (85)
T ss_dssp HHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 4678999999999998773
No 33
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=26.45 E-value=3.2e+02 Score=22.95 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=47.1
Q ss_pred CCCCCCc-hHHHHHHHH-HhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCch
Q psy354 64 ECTTQGL-DDLGARCAQ-YKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDL 141 (207)
Q Consensus 64 e~~t~GL-D~L~~R~~~-y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i 141 (207)
-|+-.|+ |+|+.|++. .-+.+ |-++-...+.|...+-.+|...| ++.|.+ |++|+-=. -|..
T Consensus 90 AkiA~GiaD~Llt~~a~~~L~~~------~pv~i~P~~m~~~~~~~~Nl~~L-------~~~G~~-ii~P~~g~--~~~p 153 (181)
T TIGR00421 90 SAIANGYADNLITRAADVCLKER------RKLVLVPRETPLNSIHLENMLRL-------SRMGAI-ILPPMPAF--YTRP 153 (181)
T ss_pred HHHHcccCCCHHHHHHHHHHhcC------CCEEEEeCCCcCCHHHHHHHHHH-------HHCCCE-EECCCCcc--cCCC
Confidence 4556665 789998753 22222 23333334567776777887777 456766 78997733 2333
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy354 142 ERAQKVTETVLAAVYKALN 160 (207)
Q Consensus 142 ~~c~~vt~~vL~~v~~~L~ 160 (207)
+.-.+..+.+...+++.|.
T Consensus 154 ~~~~~~~~~i~~~~l~~lg 172 (181)
T TIGR00421 154 KSVEDMIDFIVGRVLDQLG 172 (181)
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 4444545555555666663
No 34
>PF14613 DUF4449: Protein of unknown function (DUF4449)
Probab=26.08 E-value=43 Score=28.36 Aligned_cols=28 Identities=14% Similarity=0.442 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHcCCccceeee-eeecCCC
Q psy354 72 DLGARCAQYKKDGCHFAKWRC-VLKINVN 99 (207)
Q Consensus 72 ~L~~R~~~y~~~Ga~FaKWR~-Vi~i~~~ 99 (207)
|...++.+|.++=..+.+||| |+.|++.
T Consensus 128 Gis~katE~~elA~kG~~W~SpvFsIg~a 156 (164)
T PF14613_consen 128 GISSKATEYRELARKGDRWESPVFSIGSA 156 (164)
T ss_pred hHHHHHHHHHHHHHcccCccCCceecccc
Confidence 477888899988888899998 7778754
No 35
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=25.89 E-value=1.5e+02 Score=26.35 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=34.3
Q ss_pred CCCchHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCc-eeee
Q psy354 67 TQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRI-VPIV 129 (207)
Q Consensus 67 t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GL-VPIV 129 (207)
.+.++...+|+++..+.||.|.-=.-++ +.+.+.+|...|++.|+ +||+
T Consensus 155 ~~~~~~~~~~l~~Ki~aGA~f~iTQ~~f--------------d~~~~~~~~~~~~~~g~~~pIi 204 (287)
T PF02219_consen 155 APDFEAELKRLKKKIDAGADFIITQPFF--------------DAEAFERFLDRLREAGIDVPII 204 (287)
T ss_dssp CSSHHHHHHHHHHHHHTTESEEEEEE-S--------------SHHHHHHHHHHHHHTTHTSEEE
T ss_pred ccCHHHHHHHHHHHHHCCCCEEeccccC--------------CHHHHHHHHHHHHHcCCCCcEE
Confidence 3457777889988889998883322222 14567888889999887 7764
No 36
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.04 E-value=35 Score=31.32 Aligned_cols=32 Identities=38% Similarity=0.679 Sum_probs=26.0
Q ss_pred eeEEccchh--hhcCcccCCCchHHHHhhCCceeeEecCCC
Q psy354 16 ISGVILFHE--TLYQKADDGTPFVELLKQRGIIPGIKVDKG 54 (207)
Q Consensus 16 IsGvILfeE--Tl~q~~~~G~~~~~~L~~~gIvpgIKvDkG 54 (207)
=+||+|||. .+-|+ +|.|.++|-+|.|=+|..
T Consensus 222 ~~GivLFE~~daL~qr-------ADRL~~~~~lPlIiID~a 255 (283)
T PF11285_consen 222 NSGIVLFERPDALIQR-------ADRLEERGELPLIIIDAA 255 (283)
T ss_pred CcceEEeeCcHHHHHH-------HHHHHhcCCCCEEEEccc
Confidence 379999984 56665 468999999999999864
No 37
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=24.26 E-value=71 Score=31.83 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHH
Q psy354 71 DDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTET 150 (207)
Q Consensus 71 D~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~ 150 (207)
-.+..|+++.-+.+..+--..-++.++++. | .-|++|+|+- |+.| +.|-|++++--.-.-.....+|..
T Consensus 267 ~sp~~rL~~Ai~r~e~~v~YQPIV~la~Gk----c--vGaEAL~RW~---~~dG--~~vsPd~FIplAE~sG~ie~iT~~ 335 (524)
T COG4943 267 LSPRRRLQRAIERRELCVHYQPIVDLATGK----C--VGAEALARWP---QEDG--TVVSPDVFIPLAEESGMIEQITDY 335 (524)
T ss_pred cChHHHHHHHHHhcCceEEecceeEccCCc----E--ecHHHHhcCc---ccCC--CccChHHhhhHHhhcCchHHHHHH
Confidence 345667777778888888888888888774 2 3588999886 7776 567888887543333345678999
Q ss_pred HHHHHHHHHH
Q psy354 151 VLAAVYKALN 160 (207)
Q Consensus 151 vL~~v~~~L~ 160 (207)
|+.++|+.|=
T Consensus 336 Vi~~~~~dlG 345 (524)
T COG4943 336 VIRNVFRDLG 345 (524)
T ss_pred HHHHHHHHhH
Confidence 9999998763
No 38
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=23.93 E-value=6.2e+02 Score=23.91 Aligned_cols=120 Identities=23% Similarity=0.238 Sum_probs=74.7
Q ss_pred CCCCCCchHHHH--HHHHHhHcCCccceeeeeeecCCCCccHHHHH-HHHHHHHHHHHHHHhCCceeeeccccCC---CC
Q psy354 64 ECTTQGLDDLGA--RCAQYKKDGCHFAKWRCVLKINVNTPSYQAIL-ENANVLARYASICQANRIVPIVEPEVLP---DG 137 (207)
Q Consensus 64 e~~t~GLD~L~~--R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~-~na~~LAryA~icQ~~GLVPIVEPEVl~---dg 137 (207)
+++..-|++|.+ -.++.+++||.+.|-=--++.+ +.| .|+ .+..-+.|..+-|+++||-=++||=+-. +.
T Consensus 98 ~~~~gRl~~ll~~ws~~rike~GadavK~Llyy~pD-~~~---ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~d 173 (329)
T PRK04161 98 ATTTSRLPDCLVEWSVKRLKEAGADAVKFLLYYDVD-GDE---EINDQKQAYIERIGSECTAEDIPFFLELLTYDERISD 173 (329)
T ss_pred cCCCCccccccchhhHHHHHHhCCCeEEEEEEECCC-CCH---HHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcccc
Confidence 344444666654 3456689999999976555544 223 232 4555678999999999999999986642 23
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHh--CCcccccccccc------ccccCCCCC-CCCCCHHHHHH
Q psy354 138 PHDLERAQKVTETVLAAVYKALND--HHVYLEGTLLKP------NMVTAGQSS-PKKYSAQEIAQ 193 (207)
Q Consensus 138 ~H~i~~c~~vt~~vL~~v~~~L~~--~~V~leG~lLKp------nMV~pG~~~-~~~~~~e~vA~ 193 (207)
.++.+....--++|+.+ .+.+.+ .||++ ||- |+| -|... ...+|.++.+.
T Consensus 174 ~~~~eyak~kP~~V~~a-mkefs~~~~gvDV----lKvEvPvn~~~v-eG~~~g~~~yt~~eA~~ 232 (329)
T PRK04161 174 NNSAAYAKLKPHKVNGA-MKVFSDKRFGVDV----LKVEVPVNMAYV-EGFTEGEVVYSQEEAIK 232 (329)
T ss_pred cccHHHHhhChHHHHHH-HHHhccCCCCCcE----EEEecccccccc-cccCcccccccHHHHHH
Confidence 44555533336677765 588885 67764 665 334 33222 34567666543
No 39
>cd00495 Ribosomal_L25_TL5_CTC Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this family are believed to have two functions, acting as both ribosomal and stress proteins. In Escherichia coli, cells deleted for L25 were found to be viable; however, these cells grew slowly and had impaired protein synthesis capability. In Bacillus subtilis, CTC is induced under stress conditions and located in the ribosome; it has been proposed that CTC may be necessary for accurate translation under stress conditions. Ribosomal_L25_TL5_CTC is found only in bacteria and some plastids. Due to its limited taxonomic diversity and the viability of cells deleted for L25, this protein is not believed to be necessary for ribosomal assembly. Eukaryotes contain a protein called L25, which is not homologous to bacterial L
Probab=23.31 E-value=61 Score=23.99 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=22.9
Q ss_pred cccCCCchHHHHhhCCceeeEecCCCccc
Q psy354 29 KADDGTPFVELLKQRGIIPGIKVDKGVVP 57 (207)
Q Consensus 29 ~~~~G~~~~~~L~~~gIvpgIKvDkGl~p 57 (207)
+...|+.....|++.|.||||=-.+|..+
T Consensus 8 R~~~gk~~~r~lR~~G~iPavvYG~~~~~ 36 (91)
T cd00495 8 REETGKGASRRLRRAGKVPAVIYGKGKEP 36 (91)
T ss_pred cccCCChHHHHHHHCCCCCEEEECCCCCC
Confidence 34468888999999999999977776443
No 40
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.19 E-value=54 Score=27.45 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=19.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHH
Q psy354 134 LPDGPHDLERAQKVTETVLAAVYKA 158 (207)
Q Consensus 134 l~dg~H~i~~c~~vt~~vL~~v~~~ 158 (207)
.-+|.-|++.|++|++++ +++++.
T Consensus 44 d~~g~v~lddC~~vSr~i-s~~LD~ 67 (153)
T COG0779 44 DKEGGVTLDDCADVSRAI-SALLDV 67 (153)
T ss_pred CCCCCCCHHHHHHHHHHH-HHHhcc
Confidence 333899999999999995 778873
No 41
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=23.17 E-value=90 Score=27.41 Aligned_cols=97 Identities=9% Similarity=0.157 Sum_probs=58.3
Q ss_pred CCCCCchHHHHHHHHHhHcCCccceeeeeeecCC--CCccHHHHHHHHHHHHHHHHHHHhCCceeeeccc-------cCC
Q psy354 65 CTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINV--NTPSYQAILENANVLARYASICQANRIVPIVEPE-------VLP 135 (207)
Q Consensus 65 ~~t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~--~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPE-------Vl~ 135 (207)
....+.+++.+...++.+.|+.|-|--.--.... ..|... .-.-..+.+..+.+.++|+--.+.-+ .+-
T Consensus 114 ~~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~--~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~ 191 (342)
T cd01299 114 AVVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDT--QFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIR 191 (342)
T ss_pred ceecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCccc--CcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4456788888899999999999888432111110 001000 01134455667778888875554432 222
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy354 136 DGPHDLERAQKVTETVLAAVYKALNDHHVYLE 167 (207)
Q Consensus 136 dg~H~i~~c~~vt~~vL~~v~~~L~~~~V~le 167 (207)
-|-+.|++|..+++. .++.|.++|+.+.
T Consensus 192 ~G~~~i~H~~~~~~~----~~~~l~~~g~~~~ 219 (342)
T cd01299 192 AGVDTIEHGFLIDDE----TIELMKEKGIFLV 219 (342)
T ss_pred cCCCEEeecCCCCHH----HHHHHHHCCcEEe
Confidence 356778888777765 4667788888764
No 42
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=22.38 E-value=34 Score=28.91 Aligned_cols=16 Identities=44% Similarity=0.777 Sum_probs=13.6
Q ss_pred hCCceeeEecCCCcccC
Q psy354 42 QRGIIPGIKVDKGVVPL 58 (207)
Q Consensus 42 ~~gIvpgIKvDkGl~pl 58 (207)
.+| |+|||+.+|+...
T Consensus 145 ~kG-iaGiki~~G~EdF 160 (170)
T COG4396 145 SKG-IAGIKIVSGVEDF 160 (170)
T ss_pred hcC-CCceeeeccchhh
Confidence 678 7999999999765
No 43
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=22.16 E-value=75 Score=30.36 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=27.1
Q ss_pred CceeEEccchhhhcCcc-cCCCchHHHHhhCCceeeE
Q psy354 14 DNISGVILFHETLYQKA-DDGTPFVELLKQRGIIPGI 49 (207)
Q Consensus 14 ~~IsGvILfeETl~q~~-~~G~~~~~~L~~~gIvpgI 49 (207)
-++.|+|..|-+...+. -....+.++|+++||+ ||
T Consensus 74 i~~~G~vvre~~~~~Sn~ra~~sL~~~Lk~~gip-gI 109 (368)
T COG0505 74 IHAAGLVVRELSERPSNWRATESLDEYLKEEGIP-GI 109 (368)
T ss_pred ceEEEEEEcccccccCccccccCHHHHHHHcCCC-ce
Confidence 36899999999876443 3467899999999984 54
No 44
>PRK05920 aromatic acid decarboxylase; Validated
Probab=21.52 E-value=5.4e+02 Score=22.28 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=45.1
Q ss_pred CCCCCc-hHHHHHHHH-HhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCC-CCCCch
Q psy354 65 CTTQGL-DDLGARCAQ-YKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLP-DGPHDL 141 (207)
Q Consensus 65 ~~t~GL-D~L~~R~~~-y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~-dg~H~i 141 (207)
|..-|+ |+|..|++. .-+.+ =+-|+-.. ..|...+..+|...| .+.|.. |++|+.=. ...-++
T Consensus 109 kiA~GiaD~ll~~~a~~~L~~~-----~pvvi~P~-~m~~~~~~~~nl~~L-------~~~G~~-ii~P~~g~y~~p~~~ 174 (204)
T PRK05920 109 AIAHGLSDNLIERAADVVLKER-----RKLILVPR-ETPLSLIHLENMLKL-------AEAGAI-ILPAIPAFYHKPQTI 174 (204)
T ss_pred HHHccccCcHHHHHHHHHHhcC-----CCEEEEeC-CCCCCHHHHHHHHHH-------HHCCCE-EeCCcccccCCCCCH
Confidence 444554 778888763 22222 12233333 356666677887777 456766 89998733 444454
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy354 142 ERAQKVTETVLAAVYKALN 160 (207)
Q Consensus 142 ~~c~~vt~~vL~~v~~~L~ 160 (207)
+ +....++..+|++|.
T Consensus 175 ~---~~~~f~~~~~l~~lg 190 (204)
T PRK05920 175 D---DLVDFVVARILDLLG 190 (204)
T ss_pred H---HHHHHHHHHHHHhcC
Confidence 3 555566666666665
No 45
>COG3370 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.28 E-value=1.1e+02 Score=24.81 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=39.8
Q ss_pred eeee---eeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHHHhCCc
Q psy354 89 KWRC---VLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHV 164 (207)
Q Consensus 89 KWR~---Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~~~~V 164 (207)
||-+ +|..+ ||+..|.+|...+-+...-.++.|.+|. .|..|++.- .+=.+|...++
T Consensus 32 k~~~dVelifFG---pse~~la~~~~~~l~~l~~~~s~g~~p~--------------AC~~va~~~--gi~d~l~~~~~ 91 (113)
T COG3370 32 KWFEDVELIFFG---PSEKLLAKNDGDSLKMLQELRSLGIKPL--------------ACKVVAENL--GIEDELIFLGV 91 (113)
T ss_pred hhhhceEEEEEC---chHHHHHhcchHHHHHHHHHHHcCCcch--------------HHHHHHHhc--CCcHHHHHhcc
Confidence 4554 55556 9999999999988777888899999986 577666651 23344444443
No 46
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.19 E-value=3e+02 Score=21.17 Aligned_cols=49 Identities=24% Similarity=0.183 Sum_probs=34.2
Q ss_pred HHHHhHcCCccceeeeeeecCC-CCccHHHH--HHHHHHHHHHHHHHHhCCc
Q psy354 77 CAQYKKDGCHFAKWRCVLKINV-NTPSYQAI--LENANVLARYASICQANRI 125 (207)
Q Consensus 77 ~~~y~~~Ga~FaKWR~Vi~i~~-~~Ps~~aI--~~na~~LAryA~icQ~~GL 125 (207)
+.+++..|.-+-.+---+.+-. ..|...++ .+|+.-.+-|..|+++||+
T Consensus 11 L~~ak~~G~VGE~~dGyL~~v~~~~~~~~~lV~~~N~~R~~~Y~~iA~~ng~ 62 (95)
T PF07027_consen 11 LDQAKAQGLVGEQNDGYLGVVTSASAEVRALVAAINADRRALYQEIAKKNGI 62 (95)
T ss_pred HHHHHHCCcccccCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455677777777766666543 33444444 4699999999999999986
No 47
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=20.92 E-value=1e+02 Score=27.94 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=30.2
Q ss_pred chHHHHhhCCceee---------EecCCCcccCCCCCCCCCCCCchHHHHHHHHHhHcCCcc
Q psy354 35 PFVELLKQRGIIPG---------IKVDKGVVPLMGSEDECTTQGLDDLGARCAQYKKDGCHF 87 (207)
Q Consensus 35 ~~~~~L~~~gIvpg---------IKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y~~~Ga~F 87 (207)
+..+.|.+.||-.- +..|-|... ++ ++-+..+.+.+|++.|.+.||+.
T Consensus 120 ~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~----qg-rt~~~a~~~i~~A~a~e~AGA~~ 176 (263)
T TIGR00222 120 ETVQMLTERGVPVVGHLGLTPQSVNILGGYKV----QG-KDEEAAKKLLEDALALEEAGAQL 176 (263)
T ss_pred HHHHHHHHCCCCEEEecCCCceeEeecCCeee----cC-CCHHHHHHHHHHHHHHHHcCCCE
Confidence 34456668888654 344433332 22 23334689999999999999763
No 48
>PHA02091 hypothetical protein
Probab=20.52 E-value=43 Score=24.64 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=12.3
Q ss_pred CccceeeeeeecCCCCc
Q psy354 85 CHFAKWRCVLKINVNTP 101 (207)
Q Consensus 85 a~FaKWR~Vi~i~~~~P 101 (207)
..|||||-.--|+++.|
T Consensus 29 v~fak~r~l~ii~~d~~ 45 (72)
T PHA02091 29 VDFAKTRELQIIQRDRG 45 (72)
T ss_pred HHHHhhheEEEEecCCc
Confidence 56999998777765443
No 49
>PF04584 Pox_A28: Poxvirus A28 family; InterPro: IPR007664 The poxvirus A28 protein is expressed at late times during the virus replication cycle and is a membrane component of the intracellular mature virion. Repression of A28 inhibits cell-to-cell spread, suggesting that all poxviruses use a common A28-dependent mechanism of cell penetration []. An N-terminal hydrophobic sequence, present in all poxvirus A28 orthologues, anchors the protein in the virion surface membrane so that most of it is exposed to the cytoplasm [].; GO: 0016032 viral reproduction, 0019031 viral envelope
Probab=20.26 E-value=46 Score=27.78 Aligned_cols=9 Identities=56% Similarity=1.103 Sum_probs=7.2
Q ss_pred ceeeeeeec
Q psy354 88 AKWRCVLKI 96 (207)
Q Consensus 88 aKWR~Vi~i 96 (207)
.|||||..=
T Consensus 70 qKWRCv~~~ 78 (140)
T PF04584_consen 70 QKWRCVKYN 78 (140)
T ss_pred hceEEEeeC
Confidence 699999754
No 50
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=20.22 E-value=54 Score=25.80 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=15.8
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHhhccCCC
Q psy354 173 PNMVTAGQSSPKKYSAQEIAQATVQALQRTVPA 205 (207)
Q Consensus 173 pnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~ 205 (207)
.|+|.|| |++ |-|+|.|.||-
T Consensus 37 iN~IKPG-----------IgE-aTRvLLRRvP~ 57 (100)
T PF15608_consen 37 INLIKPG-----------IGE-ATRVLLRRVPW 57 (100)
T ss_pred cccccCC-----------hhH-HHHHHHhcCCC
Confidence 8999999 444 45777788885
No 51
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=20.12 E-value=66 Score=21.59 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=11.1
Q ss_pred HHHhCCceeeeccc
Q psy354 119 ICQANRIVPIVEPE 132 (207)
Q Consensus 119 icQ~~GLVPIVEPE 132 (207)
.+++.| +|||-||
T Consensus 50 ~A~~~g-i~vV~~~ 62 (63)
T PF12738_consen 50 KAKEWG-IPVVSPD 62 (63)
T ss_dssp HHHHCT-SEEEEHH
T ss_pred HHHHCC-CcEECCC
Confidence 478899 9999986
No 52
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=20.09 E-value=3.5e+02 Score=23.05 Aligned_cols=77 Identities=26% Similarity=0.333 Sum_probs=45.0
Q ss_pred eEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCc----------ccCCCCCCCCCCCCchHHHH-HHHHHhHcCC
Q psy354 17 SGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGV----------VPLMGSEDECTTQGLDDLGA-RCAQYKKDGC 85 (207)
Q Consensus 17 sGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl----------~pl~g~~~e~~t~GLD~L~~-R~~~y~~~Ga 85 (207)
+|+++.+|+.. +|+++|++..++.|--. .|+ .+.+++.+-|.+|.+ |-.-|.+.
T Consensus 80 GG~v~~~enr~-----------~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPl--l~~~~~~~~l~~L~~~R~~~Y~e~-- 144 (172)
T COG0703 80 GGAVLSEENRN-----------LLKKRGIVVYLDAPFETLYERLQRDRKRPL--LQTEDPREELEELLEERQPLYREV-- 144 (172)
T ss_pred CccccCHHHHH-----------HHHhCCeEEEEeCCHHHHHHHhccccCCCc--ccCCChHHHHHHHHHHHHHHHHHh--
Confidence 57788887764 88899999999886432 233 334455444666655 44555443
Q ss_pred ccceeeeeeecCCCCccHHHHHHHHHHHH
Q psy354 86 HFAKWRCVLKINVNTPSYQAILENANVLA 114 (207)
Q Consensus 86 ~FaKWR~Vi~i~~~~Ps~~aI~~na~~LA 114 (207)
+.+.+..+.++.....+-...|.
T Consensus 145 ------a~~~~~~~~~~~~v~~~i~~~l~ 167 (172)
T COG0703 145 ------ADFIIDTDDRSEEVVEEILEALE 167 (172)
T ss_pred ------CcEEecCCCCcHHHHHHHHHHHH
Confidence 55566555555444433334443
Done!