Query psy354
Match_columns 207
No_of_seqs 150 out of 678
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 19:16:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kx6_A Fructose-bisphosphate a 100.0 3E-101 1E-105 702.0 19.7 206 1-207 77-284 (379)
2 3bv4_A Fructose-bisphosphate a 100.0 3E-100 1E-104 689.6 20.5 207 1-207 55-261 (341)
3 3mbd_A Fructose-bisphosphate a 100.0 2E-100 6E-105 690.1 17.3 204 1-207 57-260 (342)
4 3mmt_A Fructose-bisphosphate a 100.0 2E-100 7E-105 690.7 16.6 206 1-207 52-261 (347)
5 2pc4_A 41 kDa antigen, fructos 100.0 1.9E-98 6E-103 683.3 19.6 206 1-207 65-272 (369)
6 2qap_A Fructose-1,6-bisphospha 100.0 3E-98 1E-102 685.3 19.1 206 1-207 88-294 (391)
7 2iqt_A Fructose-bisphosphate a 100.0 3.3E-74 1.1E-78 511.9 12.0 172 1-193 56-229 (296)
8 3b8i_A PA4872 oxaloacetate dec 63.0 19 0.00064 31.5 7.0 46 66-129 163-208 (287)
9 1r88_A MPT51/MPB51 antigen; AL 52.7 22 0.00074 29.0 5.3 53 107-163 225-277 (280)
10 3bil_A Probable LACI-family tr 50.8 72 0.0025 26.6 8.5 163 14-202 121-310 (348)
11 3h5o_A Transcriptional regulat 49.4 1.1E+02 0.0037 25.1 13.6 164 13-201 116-307 (339)
12 3sy1_A UPF0001 protein YGGS; e 47.5 88 0.003 26.1 8.5 88 45-144 124-212 (245)
13 3vni_A Xylose isomerase domain 44.8 1.2E+02 0.0041 24.3 9.0 111 35-151 51-174 (294)
14 1dp7_P MHC class II transcript 43.7 14 0.00046 26.5 2.4 19 110-128 20-38 (76)
15 3k0z_A Putative polyketide cyc 41.9 50 0.0017 24.9 5.6 77 127-205 15-92 (159)
16 3ngf_A AP endonuclease, family 38.1 94 0.0032 24.9 7.0 61 69-131 91-151 (269)
17 4do4_A Alpha-N-acetylgalactosa 37.5 45 0.0015 28.9 5.2 55 34-92 86-140 (400)
18 3tva_A Xylose isomerase domain 35.3 1.6E+02 0.0054 23.6 8.0 72 69-150 100-173 (290)
19 3apt_A Methylenetetrahydrofola 31.0 64 0.0022 28.0 5.1 48 67-128 156-204 (310)
20 3l49_A ABC sugar (ribose) tran 30.7 1.1E+02 0.0037 24.1 6.1 121 14-154 60-185 (291)
21 3ebr_A Uncharacterized RMLC-li 29.9 8.1 0.00028 30.6 -0.8 41 87-127 111-151 (159)
22 3fst_A 5,10-methylenetetrahydr 29.8 88 0.003 27.2 5.8 49 67-129 159-208 (304)
23 3u0h_A Xylose isomerase domain 28.2 1.2E+02 0.0041 23.9 6.0 81 69-151 82-169 (281)
24 1szn_A Alpha-galactosidase; (b 26.9 79 0.0027 28.5 5.1 55 34-93 80-134 (417)
25 3ijd_A Uncharacterized protein 26.5 46 0.0016 29.4 3.4 57 70-137 164-222 (315)
26 1ydo_A HMG-COA lyase; TIM-barr 25.9 3.1E+02 0.011 23.4 9.0 77 107-204 118-200 (307)
27 3qc0_A Sugar isomerase; TIM ba 23.7 2.6E+02 0.009 21.8 8.9 79 69-151 81-168 (275)
28 1dqz_A 85C, protein (antigen 8 23.3 1.3E+02 0.0044 23.9 5.3 50 107-160 230-279 (280)
29 1k77_A EC1530, hypothetical pr 23.1 2.3E+02 0.0079 22.1 6.7 79 69-151 83-168 (260)
30 3h2s_A Putative NADH-flavin re 22.6 2.5E+02 0.0086 21.1 7.5 91 108-201 81-202 (224)
31 3lrk_A Alpha-galactosidase 1; 22.1 94 0.0032 29.1 4.8 58 34-96 97-154 (479)
32 2jgq_A Triosephosphate isomera 22.0 1.2E+02 0.0041 25.6 5.1 79 109-203 99-185 (233)
33 3iv3_A Tagatose 1,6-diphosphat 21.8 4.2E+02 0.014 23.4 8.9 90 74-175 116-211 (332)
34 3btn_A Antizyme inhibitor 1; T 21.6 3E+02 0.01 24.5 7.9 87 44-139 148-238 (448)
35 2hjp_A Phosphonopyruvate hydro 20.5 50 0.0017 28.7 2.4 20 67-86 162-181 (290)
36 3gwq_A D-serine deaminase; str 20.5 1.8E+02 0.0063 25.9 6.2 94 45-146 167-260 (426)
37 2aam_A Hypothetical protein TM 20.4 1.3E+02 0.0045 26.2 5.1 49 75-131 231-280 (309)
38 2l60_A Peptide YY; GPCR ligand 20.2 13 0.00043 24.1 -1.1 25 165-195 1-25 (41)
No 1
>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, STRU genomics; HET: CIT; 2.10A {Babesia bovis}
Probab=100.00 E-value=2.9e-101 Score=701.96 Aligned_cols=206 Identities=56% Similarity=0.911 Sum_probs=203.5
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
||++|||| |++++||||||||||||+|+++||+||+++|+++|||||||||||++||+|+++|++|||||||++||++|
T Consensus 77 yR~lLfts-p~~~~~IsGvILFeETl~Qk~~dG~pf~~~L~~kGIvPGIKVDkG~~pl~g~~ge~~tqGLDgL~eRca~y 155 (379)
T 3kx6_A 77 YRSILFTT-KGLGKYISGCILFEETLFQQAPNGQNMVDLLRAEGILPGIKVDKGLVTIPNTDEEVSTTGLDGLAERCQKY 155 (379)
T ss_dssp HHHHHHTC-TTGGGTEEEEEECHHHHTCBCTTSCBHHHHHHHHTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHH
T ss_pred HHHHhhcC-cccccceeEEEcchhhccccccCCCCHHHHHHHCCCccEEEcCCCccccCCCCCCccCCChHHHHHHHHHH
Confidence 89999999 67889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCccceeeeeeecCCC--CccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKINVN--TPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKA 158 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~~~--~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~ 158 (207)
|++|||||||||||+|+++ +||.++|.+|++.|||||+|||+|||||||||||||||||||+||++|||+||++||++
T Consensus 156 ~~~Ga~FAKWR~Vlki~~~~g~PS~~aI~ena~~LArYA~icQ~~GLVPIVEPEVl~dGdHdi~~c~~Vte~VLa~vyka 235 (379)
T 3kx6_A 156 YNAGARFAKWRAVLSIDVKKNKPSNLSILETAHTLARYAAICQENGLVPIVEPEILADGDHSIEVCAEVTERVLAAVFKA 235 (379)
T ss_dssp HHTTCCEEEEEEEECCBTTTTBSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCceeeeeeEeecCCCCCCcHHHHHHHHHHHHHHHHHHHHcCcceeeeeeeCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 159 LNDHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 159 L~~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
|++|||||||||||||||+||++|+.|+||||||++||++|+||||+||
T Consensus 236 L~dh~V~LEG~lLKPnMV~pG~~~~~k~s~eeVA~aTv~~L~rtVP~av 284 (379)
T 3kx6_A 236 LNDHKVLLEGALLKPNMVTQGVDCKDKPAPQTVGFLTSRALRRTVPPAL 284 (379)
T ss_dssp HHHTTCCGGGCEECCCCCCCCTTCSCCCCHHHHHHHHHHHHHTTCCTTS
T ss_pred HHhCCccccCcccccCcccCCCcCCCcCCHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999999999999999999999999999997
No 2
>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis, phosphoprotein, schiff base; HET: 13P; 1.70A {Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A* 1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A 3lge_A 3tu9_A* 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A 3dfp_A ...
Probab=100.00 E-value=3.2e-100 Score=689.61 Aligned_cols=207 Identities=71% Similarity=1.085 Sum_probs=205.1
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
||++|||||.++++||||||||||||+|+++||+||+++|+++|||||||||||++||+|+++|++|||||||++||++|
T Consensus 55 yR~ll~tsp~~~~~~IsGvILfeETl~qk~~dG~p~~~~L~~~GIvPgIKVDkGl~pl~G~~~e~~t~GLDgL~eR~~~y 134 (341)
T 3bv4_A 55 YRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLVGLSERCAQY 134 (341)
T ss_dssp HHHHHHTCCGGGTTTEEEEEECHHHHTCBCTTSCBHHHHHHTTTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHH
T ss_pred HHhhhhcCCcccccceEEEEcchhhccccCcCCcCHHHHHHHCCCceEEEcCCCcCcCCCCCCCcCCCChhHHHHHHHHH
Confidence 89999999778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALN 160 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~ 160 (207)
|++|||||||||||+|++++||..+|.+|++.|||||+|||+|||||||||||||||||||++|++||++||+++|++|+
T Consensus 135 ~~~Ga~FAKWR~Viki~~~~PS~~aI~~na~~LaryA~icQ~~GLVPIVEPEVl~dg~h~l~~~~~vte~vL~~~~~aL~ 214 (341)
T 3bv4_A 135 KKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALS 214 (341)
T ss_dssp HHTTCCEEEEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcceeeeeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHcCcceeecceECCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 161 DHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 161 ~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
+|||+|||||||||||+||++|+.++++|+||++||++|+|||||+|
T Consensus 215 d~~V~LegtLLKPnMV~pg~~~~~~~~~e~va~~Tv~~l~rtvP~aV 261 (341)
T 3bv4_A 215 DHHIYLEGTLLKPNMVTPGHACTQKYSHEEIAMATVTALRRTVPPAV 261 (341)
T ss_dssp HTTCCGGGCEECCCCCCCCTTCSSCCCHHHHHHHHHHHHHTTSCTTS
T ss_pred CCeEEecCccCcCccccCCCcccccCCHHHHHHHHHHHHhhcCCccc
Confidence 99999999999999999999999999999999999999999999997
No 3
>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base; 2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* 3qrh_A
Probab=100.00 E-value=1.8e-100 Score=690.09 Aligned_cols=204 Identities=43% Similarity=0.699 Sum_probs=201.5
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
||++|||| |++++||||||||||||+|+++||+||+++|+++|||||||||||++|| +++|++|||||||++||++|
T Consensus 57 yR~lL~ts-p~~~~~IsGvILfeETl~qk~~dG~pf~~~L~~kGIvpGIKVDkG~~pl--~~ge~~tqGLDgL~eR~a~y 133 (342)
T 3mbd_A 57 FREILFST-KGIERYIGGVILNQETFEQTSGSGVPLTELLKKKGIEIGIKLDKGLIDY--KEKEKISVGLEDLDLRCKSS 133 (342)
T ss_dssp HHHHHHTC-TTGGGTEEEEEECGGGGGCBCTTSCBHHHHHHHTTCEEEEECCCCEEEE--TTTEEEECCGGGHHHHHTCG
T ss_pred HHHHHhcC-cccccceeEEEcchhhccccccCCCCHHHHHHHCCCeeEEecCCCCcCC--CCCCccccchHHHHHHHHHH
Confidence 89999999 6788999999999999999999999999999999999999999999999 88999999999999999999
Q ss_pred hHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALN 160 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~ 160 (207)
|++|||||||||||+|++++||..+|.+|++.|||||+|||+|||||||||||||||||||+||++|||+||++||++|+
T Consensus 134 ~~~Ga~FAKWR~Vlki~~~~PS~~aI~ena~~LarYA~icQ~~GLVPIVEPEVl~dGdHdi~~c~~vte~vla~v~kaL~ 213 (342)
T 3mbd_A 134 AFKDATFAKWRSLFYFYDGIPSEDCINENCSILAKYAIICQKNGLVPIVEPEVFLEGDYSMKRSYEVTRQILSTLMKYLN 213 (342)
T ss_dssp GGTTCCEEEEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCceeeeeeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCceeeeeeECCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 161 DHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 161 ~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
+|||||||||||||||+||++|+.|+|||+||++||++|+||||+||
T Consensus 214 ~h~V~lEG~lLKPnMV~pG~~~~~k~s~eeVA~~Tv~~L~rtVP~av 260 (342)
T 3mbd_A 214 YELVYIPGVLIKASYVTSGQLSNEKYTPKKVATFTLRALLSTIPCGI 260 (342)
T ss_dssp HTTCCGGGCEEEECCCCCCTTSCCCCCHHHHHHHHHHHHHHHCCTTC
T ss_pred hCCccccCcccccccccCCCcCCCcCCHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999997
No 4
>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics, seattle structural GE center for infectious disease, hydrolase; HET: 2FP; 2.35A {Bartonella henselae} SCOP: c.1.10.0
Probab=100.00 E-value=2.1e-100 Score=690.72 Aligned_cols=206 Identities=48% Similarity=0.776 Sum_probs=203.6
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
||++||||+|++++||||||||||||+|+++||+||+++|+++|||||||||||++||+|+++|++|||||||.+||++|
T Consensus 52 yR~lL~ts~p~~~~~IsGvILfeETl~Qk~~dG~pf~~~L~~kGIvpGIKVDkG~~pl~G~~ge~~tqGLDgL~eR~a~y 131 (347)
T 3mmt_A 52 YREMLFTAKEAMESAISGVILFDETLRQKASTGQMLTDLIRDAGAVPGIKVDTGAKPLAAFPQETITEGLDGLRERLKDY 131 (347)
T ss_dssp HHHHHHTCHHHHHHTEEEEEECHHHHTCBCTTSSBHHHHHHHTTCEEEEECCCCEEECTTSTTCEEECCCTTHHHHHHHH
T ss_pred HHHHHhcCCcccccceeEEEecHHhccccCcCCCCHHHHHHhCCCccEEEcCCCcccCCCCCCCccCCCchHHHHHHHHH
Confidence 89999999788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCccceeeeeeecC-CCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCC---CCchHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKIN-VNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDG---PHDLERAQKVTETVLAAVY 156 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~-~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg---~H~i~~c~~vt~~vL~~v~ 156 (207)
|++|||||||||||+|+ +++||..+|.+|++.|||||+|||+||||||||||||||| ||||++|++|||+||++||
T Consensus 132 ~~~Ga~FAKWR~Viki~~~~~PS~~aI~~na~~LarYA~icQ~~GLVPIVEPEVl~dG~~~dHdi~~c~~Vte~VL~~v~ 211 (347)
T 3mmt_A 132 YTLGARFAKWRAVIAIDAQTLPTRGAISQNAQALARYAALCQEAGLVPIVEPEVLMDGPSRQHSITRCFEVTKVVLHTVF 211 (347)
T ss_dssp HHTTCCEEEEEEEECCCSSSCSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCcceeeeeEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCccceeCceEcCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998 8999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHhCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 157 KALNDHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 157 ~~L~~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
++|++|||||||||||||||+||++ +.|+||||||++||++|+||||+||
T Consensus 212 kaL~dh~V~LEG~lLKPnMV~pG~~-~~k~s~eevA~~Tv~~L~rtVP~av 261 (347)
T 3mmt_A 212 KELFEARVLFEGMILKPNMVIDGKD-ARIASVEEVAEKTVHVLKQTVPAAV 261 (347)
T ss_dssp HHHHHTTCCGGGCEECCCCSCCCTT-SCCCCHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHhcCccccCcccccccccCCCC-CCcCCHHHHHHHHHHHHHhhCCccc
Confidence 9999999999999999999999999 8999999999999999999999997
No 5
>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery, structu genomics, PSI, protein structure initiative; 2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A
Probab=100.00 E-value=1.9e-98 Score=683.25 Aligned_cols=206 Identities=55% Similarity=0.874 Sum_probs=203.8
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQY 80 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y 80 (207)
||++|||| |++++||||||||||||+|+++||+||+++|+++|||||||||||++||+|+++|++|||||||++||++|
T Consensus 65 yR~ll~ts-p~~~~~IsGvILfeETl~qk~~dG~pf~~~L~~kGIvPGIKVDkGl~pl~g~~~e~~tqGLDgL~eR~a~y 143 (369)
T 2pc4_A 65 YRDLLFGT-KGLGKFISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPCTDEEKSTQGLDGLAERCKEY 143 (369)
T ss_dssp HHHHHHTC-TTCTTTEEEEEECHHHHTCBCTTSCBHHHHHHHHTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHH
T ss_pred HHHHhccC-CCcccceEEEEcchHhccCcCcCCcCHHHHHHHCCCceEEEcCCCcccCCCCCCCcCCCChhhHHHHHHHH
Confidence 89999999 56999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCccceeeeeeecCC--CCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHH
Q psy354 81 KKDGCHFAKWRCVLKINV--NTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKA 158 (207)
Q Consensus 81 ~~~Ga~FaKWR~Vi~i~~--~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~ 158 (207)
|++|||||||||||+|++ ++||..+|.+|++.|||||+|||+|||||||||||||||||||++|++||++||+++|++
T Consensus 144 ~~~Ga~FAKWR~Viki~~~~~~PS~~aI~~na~~LArYA~icQ~~GLVPIVEPEVl~dG~h~l~~~~~vte~vL~~~~~a 223 (369)
T 2pc4_A 144 YKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYASICQQNRLVPIVEPEILADGPHSIEVCAVVTQKVLSCVFKA 223 (369)
T ss_dssp HHHTCCEEEEEEEECCBGGGTBSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCeeeeeEEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHcCccceecceECCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 159 LNDHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 159 L~~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
|++|||+|||||||||||+||++|+.++|||+||++||++|+|||||+|
T Consensus 224 L~d~~V~LegtLLKpnmv~~G~~~~~k~s~e~vA~~Tv~~L~rtvPpaV 272 (369)
T 2pc4_A 224 LQENGVLLEGALLKPNMVTAGYECTAKTTTQDVGFLTVRTLRRTVPPAL 272 (369)
T ss_dssp HHHTTCCGGGCEECCCCCCCCTTCSSCCCHHHHHHHHHHHHHHHCCTTS
T ss_pred cCCCeEEecCccCCCccccccccccccCCHHHHHHHHHHHHHhcCCccC
Confidence 9999999999999999999999999999999999999999999999997
No 6
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, fructose-1,6-bisphosphate teminal tail, lyase; 1.59A {Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A* 2qdh_A* 1epx_A 1f2j_A
Probab=100.00 E-value=3e-98 Score=685.35 Aligned_cols=206 Identities=48% Similarity=0.730 Sum_probs=204.0
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCC-CCCCCCCCCCchHHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLM-GSEDECTTQGLDDLGARCAQ 79 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~-g~~~e~~t~GLD~L~~R~~~ 79 (207)
||++|||| |++++||||||||||||+|+++||+||+++|+++|||||||||||++||+ |+++|++|||||||++||++
T Consensus 88 yR~lL~ts-p~~~~~IsGvILFeETl~Qk~~dG~pf~~~L~~kGIvPGIKVDkGl~pl~~G~~~e~~tqGLDgL~eR~a~ 166 (391)
T 2qap_A 88 YRALMLEA-EGFEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASA 166 (391)
T ss_dssp HHHHHHTC-TTGGGTEEEEEECHHHHTCBCTTSSBHHHHHHHTTCEEEEECCCCEEECSSSSTTCEEECCCTTHHHHHHH
T ss_pred HHHheecC-CCccCceEEEEcchHhccCcCcCCcCHHHHHHHCCCeeEEEecCCcccccCCCCCCccCCChhHHHHHHHH
Confidence 89999999 66999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHH
Q psy354 80 YKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKAL 159 (207)
Q Consensus 80 y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L 159 (207)
||++|||||||||||+|++++||..+|.+||+.|||||+|||+|||||||||||||||||||++|++|||+||++||++|
T Consensus 167 y~~~Ga~FAKWRsViki~~~~PS~~aI~~na~~LArYA~icQ~~GLVPIVEPEVl~dG~H~l~~c~~Vte~vla~v~kaL 246 (391)
T 2qap_A 167 YYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAAL 246 (391)
T ss_dssp HHHTTCCEEEEEEEECCBTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcceeeeeEEeccCCCCCHHHHHHHHHHHHHHHHHHHHcCceeeecceECCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCCCC
Q psy354 160 NDHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPAAV 207 (207)
Q Consensus 160 ~~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~av 207 (207)
++|+|+|||||||||||+||++|+.++|||+||++||++|+|||||+|
T Consensus 247 ~d~~V~LegtLLKPnMv~pG~~~~~k~s~eevA~~Tv~~L~rtVPpaV 294 (391)
T 2qap_A 247 QRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAHYTVMTLARTMPAML 294 (391)
T ss_dssp HHHTCCGGGCEECCCCCCCCTTSSCCCCHHHHHHHHHHHHHHHSBTTC
T ss_pred cCCeEEecCccccCcccccCccccccCCHHHHHHHHHHHHhhcCCCcc
Confidence 999999999999999999999999999999999999999999999997
No 7
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural genomics, PSI-2; 2.46A {Porphyromonas gingivalis}
Probab=100.00 E-value=3.3e-74 Score=511.88 Aligned_cols=172 Identities=29% Similarity=0.382 Sum_probs=164.1
Q ss_pred CcccccccCCCCCCceeEEccchhhhcCcccCCCchHHHH-hhCCceeeEecCCCcccCC-CCCCCCCCCCchHHHHHHH
Q psy354 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELL-KQRGIIPGIKVDKGVVPLM-GSEDECTTQGLDDLGARCA 78 (207)
Q Consensus 1 yRell~tt~~~~~~~IsGvILfeETl~q~~~~G~~~~~~L-~~~gIvpgIKvDkGl~pl~-g~~~e~~t~GLD~L~~R~~ 78 (207)
||++|||||.+.++||||||||||||+|++ ||+||+++| +++|||||||||||++||+ |+++|++|||||||++||+
T Consensus 56 yR~ll~tsp~~~~~~IsGvILfeeTl~q~~-dG~p~~~~Lw~~kGIvpgIKVDkGl~pl~~G~~~e~~tqGLDgL~eR~~ 134 (296)
T 2iqt_A 56 MRTRMITSPAFATGKIIGVILFERTMRGKI-EGMPTADFLWEKRHIVPFLKVDKGLQDEANGVQLMKPFPELGKLCEEAV 134 (296)
T ss_dssp HHHHHHHSGGGGSSSEEEEEECHHHHTSEE-TTEEHHHHHHHHHCCEEEEECCCCBCCCBTTEECBCCCTTHHHHHHHHH
T ss_pred HhhheecCCCcccCeeeeeeCchhhcCcCC-CCeEhHHHHHHhCCCceEEEcCCCccccCCCCCCCccCCChhHHHHHHH
Confidence 899999996666999999999999999985 999999999 6999999999999999999 9999999999999999999
Q ss_pred HHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHH
Q psy354 79 QYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKA 158 (207)
Q Consensus 79 ~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~ 158 (207)
+|+++| |||||||+|++ ..+|.+|++.|||||++||+||||||||||||+||+ |+++|++||++||+++|++
T Consensus 135 ~y~~~G---AKWR~Vlki~~----~~aI~~na~~laryA~icq~~GLVPIVEPEVl~dg~-d~~~c~~vte~vL~~v~~a 206 (296)
T 2iqt_A 135 GYHVFG---TKMRSVIKQAN----EQGIRDIVEQQFQWGKEILSHGLVPILEPEVDIHCP-EKAKAEEILKRELLAQLDK 206 (296)
T ss_dssp HTTCCE---EEEEEEECSCC----HHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTCT-THHHHHHHHHHHHHHHHHH
T ss_pred HhccCC---CeeeeeeecCc----hhHHHHHHHHHHHHHHHHHHcCccceecceECCCCC-CHHHHHHHHHHHHHHHHHH
Confidence 997766 99999999985 789999999999999999999999999999999999 9999999999999999999
Q ss_pred HHhCCccccccccccccccCCCCCCCCCCHHHHHH
Q psy354 159 LNDHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQ 193 (207)
Q Consensus 159 L~~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~ 193 (207)
|++ ||+||||| ||++| ++++||+
T Consensus 207 L~~-~V~Legtl-------pg~~~----~~~~va~ 229 (296)
T 2iqt_A 207 MTE-PVMLKITI-------PTVDN----FYKEIIE 229 (296)
T ss_dssp CSS-CEEEEEEC-------CSSTT----TTHHHHT
T ss_pred Hhh-CcEEeccc-------CCCCC----CHHhhcC
Confidence 999 99999999 99998 6788886
No 8
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=62.97 E-value=19 Score=31.47 Aligned_cols=46 Identities=13% Similarity=0.321 Sum_probs=32.0
Q ss_pred CCCCchHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeee
Q psy354 66 TTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIV 129 (207)
Q Consensus 66 ~t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIV 129 (207)
...|||.+.+|++.|.+.||+. ++-. ..|+..-+ .++|++-. +|++
T Consensus 163 a~~gl~~ai~Ra~ay~eAGAd~-----i~~e--~~~~~~~~----------~~i~~~~~-~P~i 208 (287)
T 3b8i_A 163 ELIDVDAVIQRTLAYQEAGADG-----ICLV--GVRDFAHL----------EAIAEHLH-IPLM 208 (287)
T ss_dssp TTSCHHHHHHHHHHHHHTTCSE-----EEEE--CCCSHHHH----------HHHHTTCC-SCEE
T ss_pred hhcCHHHHHHHHHHHHHcCCCE-----EEec--CCCCHHHH----------HHHHHhCC-CCEE
Confidence 3468999999999999999872 3322 34654332 46677765 7887
No 9
>1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3
Probab=52.74 E-value=22 Score=28.96 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHHHhCC
Q psy354 107 LENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHH 163 (207)
Q Consensus 107 ~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~~~~ 163 (207)
.+++..+ ++..+++|.+| ++=++..+|.|+...-...-...|.-+|++|+.|+
T Consensus 225 ~~~~~~~---~~~L~~~g~~~-~~~~~~~~g~H~~~~w~~~l~~~l~~~~~~~~~~~ 277 (280)
T 1r88_A 225 MGNSRMF---YNQYRSVGGHN-GHFDFPASGDNGWGSWAPQLGAMSGDIVGAIRHHH 277 (280)
T ss_dssp HHHHHHH---HHHHHHTTCCS-EEEECCSSCCSSHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHH---HHHHHHCCCcc-eEEEecCCCCcChhHHHHHHHHHHHHHHHHHhhhc
Confidence 3444444 45667788334 23344468999999988888999999999999876
No 10
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=50.76 E-value=72 Score=26.57 Aligned_cols=163 Identities=13% Similarity=0.152 Sum_probs=94.2
Q ss_pred CceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHH--HHHH-HHhHcCCcccee
Q psy354 14 DNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLG--ARCA-QYKKDGCHFAKW 90 (207)
Q Consensus 14 ~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~--~R~~-~y~~~Ga~FaKW 90 (207)
+.+-|+|++.-... .+..+.|++.|| |-|=+|..... . .....-+.|+-. ..+. ...+.|.
T Consensus 121 ~~vdgiI~~~~~~~------~~~~~~l~~~~i-PvV~i~~~~~~---~-~~~~~V~~D~~~~~~~a~~~L~~~G~----- 184 (348)
T 3bil_A 121 HGVDGIICVPNEEC------ANQLEDLQKQGM-PVVLVDRELPG---D-STIPTATSNPQPGIAAAVELLAHNNA----- 184 (348)
T ss_dssp TTCSCEEECCCGGG------HHHHHHHHHC-C-CEEEESSCCSC---C--CCCEEEEECHHHHHHHHHHHHHTTC-----
T ss_pred CCCCEEEEeCCCCC------hHHHHHHHhCCC-CEEEEcccCCC---C-CCCCEEEeChHHHHHHHHHHHHHCCC-----
Confidence 45677777643221 134566777775 77777764321 0 112223344322 2232 3345663
Q ss_pred eeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHH---------------HH
Q psy354 91 RCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLA---------------AV 155 (207)
Q Consensus 91 R~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~---------------~v 155 (207)
|.+.-+... +... ....-+.-|-+.++++|+ +|++...++.+.+..++.+++.|. .+
T Consensus 185 ~~I~~i~~~-~~~~---~~~~R~~Gf~~al~~~g~----~~~~v~~~~~~~~~~~~~~~~ll~~~~~ai~~~nD~~A~g~ 256 (348)
T 3bil_A 185 LPIGYLSGP-MDTS---TGRERLEDFKAACANSKI----GEQLVFLGGYEQSVGFEGATKLLDQGAKTLFAGDSMMTIGV 256 (348)
T ss_dssp CSEEEECCC-TTSH---HHHHHHHHHHHHHHHTTC----CCCEEECCCSSHHHHHHHHHHHHHTTCSEEEESSHHHHHHH
T ss_pred CeEEEEeCC-CCCc---cHHHHHHHHHHHHHHcCc----CccEEEcCCCCHHHHHHHHHHHHcCCCCEEEEcChHHHHHH
Confidence 344445422 2211 223456677788899997 566666788888888888888776 36
Q ss_pred HHHHHhCCccccc---------cccccccccCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy354 156 YKALNDHHVYLEG---------TLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRT 202 (207)
Q Consensus 156 ~~~L~~~~V~leG---------~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rt 202 (207)
+++|+++|....+ +-+ ..+..|... +-...+++++...++.|.+.
T Consensus 257 ~~al~~~G~~vP~disvvG~D~~~~-~~~~~p~lt-tv~~~~~~~g~~Av~~l~~~ 310 (348)
T 3bil_A 257 IEACHKAGLVIGKDVSVIGFDTHPL-FALQPHPLT-VIDQNVEQLAQRAVSILTEL 310 (348)
T ss_dssp HHHHHHTTCCBTTTBEEEEESCCGG-GGGSSSCCC-EEECCHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCCCCeEEEEeCCcHH-HHhcCCCce-EEEcCHHHHHHHHHHHHHHH
Confidence 8899999875432 221 234445543 44567899999999988754
No 11
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=49.37 E-value=1.1e+02 Score=25.15 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=94.9
Q ss_pred CCceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHH--HHH-HHHhHcCCccce
Q psy354 13 GDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLG--ARC-AQYKKDGCHFAK 89 (207)
Q Consensus 13 ~~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~--~R~-~~y~~~Ga~FaK 89 (207)
++.+-|+|++.-. ...++.+.|++.|| |-|=+|.-. +.+ .- .-+.|+-. ..+ ....+.|.
T Consensus 116 ~~~vdGiIi~~~~------~~~~~~~~l~~~~i-PvV~~~~~~-~~~---~~--~V~~D~~~~~~~a~~~L~~~G~---- 178 (339)
T 3h5o_A 116 QHRPDGVLITGLS------HAEPFERILSQHAL-PVVYMMDLA-DDG---RC--CVGFSQEDAGAAITRHLLSRGK---- 178 (339)
T ss_dssp TTCCSEEEEECSC------CCTTHHHHHHHTTC-CEEEEESCC-SSS---CC--EEECCHHHHHHHHHHHHHHTTC----
T ss_pred cCCCCEEEEeCCC------CCHHHHHHHhcCCC-CEEEEeecC-CCC---Ce--EEEECHHHHHHHHHHHHHHCCC----
Confidence 4678899987521 12256777888886 666666421 111 11 33344321 222 23445663
Q ss_pred eeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHH---------------
Q psy354 90 WRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAA--------------- 154 (207)
Q Consensus 90 WR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~--------------- 154 (207)
|.+.-++.. ++.. ....+.-|-+.++++|+- ..++++...++.+.+..++.+++.|..
T Consensus 179 -~~I~~i~~~-~~~~----~~~R~~Gf~~al~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A 251 (339)
T 3h5o_A 179 -RRIGFLGAQ-LDER----VMKRLDGYRAALDAADCR-DAGLEWLDPQPSSMQMGADMLDRALAERPDCDALFCCNDDLA 251 (339)
T ss_dssp -CSEEEEEES-CCHH----HHHHHHHHHHHHHHTTCC-CGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHH
T ss_pred -CeEEEEeCC-CCcc----HHHHHHHHHHHHHHCCCC-CCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEEECChHHH
Confidence 333334321 1221 234566688888999982 223445557888999988888888764
Q ss_pred --HHHHHHhCCccccccc--------cccccccCCCCCCCCCCHHHHHHHHHHHhhc
Q psy354 155 --VYKALNDHHVYLEGTL--------LKPNMVTAGQSSPKKYSAQEIAQATVQALQR 201 (207)
Q Consensus 155 --v~~~L~~~~V~leG~l--------LKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~r 201 (207)
++++|+++|+...+-+ --..+..|... +-...+++++...++.|.+
T Consensus 252 ~g~~~al~~~G~~vP~disvvgfD~~~~~~~~~p~lt-tv~~~~~~~g~~Av~~L~~ 307 (339)
T 3h5o_A 252 IGALARSQQLGIAVPERLAIAGFNDLQPAAWCTPPLT-TVATPRRDIGVHAAKALLQ 307 (339)
T ss_dssp HHHHHHHHHTTCCTTTTCEEECSBCCGGGTTSSSCCB-EEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEEEECCHHHHhccCCCce-EEEeCHHHHHHHHHHHHHH
Confidence 6889999987643211 11223344433 3456789999999988764
No 12
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=47.51 E-value=88 Score=26.09 Aligned_cols=88 Identities=18% Similarity=0.092 Sum_probs=58.8
Q ss_pred ceeeEecCCCcccCC-CCCCCCCCCCchHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhC
Q psy354 45 IIPGIKVDKGVVPLM-GSEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQAN 123 (207)
Q Consensus 45 IvpgIKvDkGl~pl~-g~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~ 123 (207)
+=.-||||+|-..-. |.. + +.+..+.+++. ....=+++-+..+....+....+.+....|.+.+.-.++.
T Consensus 124 ~~V~lqVntG~e~~R~G~~---~-ee~~~l~~~i~-----~~~~l~l~Glmt~~~~~~d~~~~~~~f~~l~~l~~~l~~~ 194 (245)
T 3sy1_A 124 LNVLIQINISDENSKSGIQ---L-AELDELAAAVA-----ELPRLRLRGLSAIPAPESEYVRQFEVARQMAVAFAGLKTR 194 (245)
T ss_dssp EEEEEEBCCSCTTCCSSBC---G-GGHHHHHHHHT-----TCTTEEEEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEECCCCcCCcCCC---H-HHHHHHHHHHH-----cCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 446799999965433 432 2 23556665553 2344677888888755566666777777888777777777
Q ss_pred CceeeeccccCCCCCCchHHH
Q psy354 124 RIVPIVEPEVLPDGPHDLERA 144 (207)
Q Consensus 124 GLVPIVEPEVl~dg~H~i~~c 144 (207)
|. + -+++-|-+.+|.+.+
T Consensus 195 ~~-~--~~~LSmGmS~d~~~A 212 (245)
T 3sy1_A 195 YP-H--IDTLALGQSDDMEAA 212 (245)
T ss_dssp ST-T--CCEEECCCSTTHHHH
T ss_pred CC-C--CCEEeccCcHhHHHH
Confidence 64 3 367888889998774
No 13
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=44.80 E-value=1.2e+02 Score=24.32 Aligned_cols=111 Identities=11% Similarity=0.026 Sum_probs=61.0
Q ss_pred chHHHHhhCCceeeEecCCCccc-----CCCCCCCCCCCCchHHHHHHHHHhHcCCccceeeeeeec------CCCCccH
Q psy354 35 PFVELLKQRGIIPGIKVDKGVVP-----LMGSEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKI------NVNTPSY 103 (207)
Q Consensus 35 ~~~~~L~~~gIvpgIKvDkGl~p-----l~g~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i------~~~~Ps~ 103 (207)
.+.+.+++.|+-+.. ...| +.+.+.+.....++.+.+-+....++||..-. .++.. ....+..
T Consensus 51 ~~~~~l~~~gl~i~~----~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~--~~~~~~~~~~~~~~~~~~ 124 (294)
T 3vni_A 51 ELKACAHGNGITLTV----GHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIG--GALYSYWPIDYTKTIDKK 124 (294)
T ss_dssp HHHHHHHHTTCEEEE----EECCCGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTCCEEE--ESTTSCSSCCTTSCCCHH
T ss_pred HHHHHHHHcCCeEEE----eecCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeee--ccccCCCCCcCCCCCCHH
Confidence 356677888886543 1111 11111112223345555555555678876432 12211 1123456
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCC--CchHHHHHHHHHH
Q psy354 104 QAILENANVLARYASICQANRIVPIVEPEVLPDGP--HDLERAQKVTETV 151 (207)
Q Consensus 104 ~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~--H~i~~c~~vt~~v 151 (207)
.+....+..|.+-+..+++.|+.--+||---..+. ++.+...++-+++
T Consensus 125 ~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~~~~l~~~v 174 (294)
T 3vni_A 125 GDWERSVESVREVAKVAEACGVDFCLEVLNRFENYLINTAQEGVDFVKQV 174 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEECCCTTTCSSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEecCcccCcccCCHHHHHHHHHHc
Confidence 67777788888888999999999999985322221 3555555554443
No 14
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=43.66 E-value=14 Score=26.49 Aligned_cols=19 Identities=16% Similarity=0.419 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhCCceee
Q psy354 110 ANVLARYASICQANRIVPI 128 (207)
Q Consensus 110 a~~LAryA~icQ~~GLVPI 128 (207)
....++|.+.|+++|+-|+
T Consensus 20 ~~vY~~Y~~~C~~~~~~pl 38 (76)
T 1dp7_P 20 STLYNHYLLHSQEQKLEPV 38 (76)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCCccC
Confidence 5678999999999998773
No 15
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=41.91 E-value=50 Score=24.86 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=52.8
Q ss_pred eeeccccCC-CCCCchHHHHHHHHHHHHHHHHHHHhCCccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhccCCC
Q psy354 127 PIVEPEVLP-DGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVPA 205 (207)
Q Consensus 127 PIVEPEVl~-dg~H~i~~c~~vt~~vL~~v~~~L~~~~V~leG~lLKpnMV~pG~~~~~~~~~e~vA~~Tv~~l~rtvP~ 205 (207)
+-++|.-+. ||+++-..... ...+....|++++.+++..=..++-|+++.-........+.+.+... +..+++..|.
T Consensus 15 ~~~~p~~~~~d~~~~~~~~~~-n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~~p~~g~~~G~e~~~~~-~~~~~~~~pd 92 (159)
T 3k0z_A 15 EMPKPKAMTIDPSLSQKEATE-MVHAAQRFYAFWDTGKEELIPQTVTENFFDHTLPKGRPQGTEGLKFA-AQNFRKIVPN 92 (159)
T ss_dssp TSCCCSSEEECTTSCHHHHHH-HHHHHHHHHHHHHHCCGGGHHHHEEEEEEESSCCTTCCSSHHHHHHH-HHHHHTTCCS
T ss_pred cCCCCceeeccCCCChhhhHH-HHHHHHHHHHHHhcCCHHHHHHHcCCCeEEecCCCCCCCCHHHHHHH-HHHHHHhCCC
Confidence 567888766 88777655544 56677889999999987666667889888643222234577887764 5666666663
No 16
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=38.06 E-value=94 Score=24.88 Aligned_cols=61 Identities=13% Similarity=-0.036 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeecc
Q psy354 69 GLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEP 131 (207)
Q Consensus 69 GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEP 131 (207)
.++.+.+-+....++||..-..-+- ...+.+...+....+..|.+-+..+++.|+.-.+||
T Consensus 91 ~~~~~~~~i~~A~~lGa~~v~~~~g--~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 151 (269)
T 3ngf_A 91 FRDNVDIALHYALALDCRTLHAMSG--ITEGLDRKACEETFIENFRYAADKLAPHGITVLVEP 151 (269)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECCBC--BCTTSCHHHHHHHHHHHHHHHHHHHGGGTCEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccC--CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 3445555555556788754322111 122334566777778888888999999999999997
No 17
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*
Probab=37.46 E-value=45 Score=28.93 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=42.3
Q ss_pred CchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHHhHcCCccceeee
Q psy354 34 TPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQYKKDGCHFAKWRC 92 (207)
Q Consensus 34 ~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR~ 92 (207)
++++++++++|+-+||=.|-|...-.|.++ ..++-...-++.|.+-|..|=|+-.
T Consensus 86 k~ladyih~~Glk~Giy~~~~~~~c~g~~~----~~~~~~~~da~~~a~wGvdylK~D~ 140 (400)
T 4do4_A 86 PFLADYVHSLGLKLGIYADMGNFTCMGYPG----TTLDKVVQDAQTFAEWKVDMLKLDG 140 (400)
T ss_dssp HHHHHHHHHTTCEEEEEEEBSSBCTTSCBC----BCGGGHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHCCceEEEecCCCCcccCCCCc----hhHhHHHHHHHHHHHhCCceEeecc
Confidence 467899999999999999999877666543 1355555567788889999888754
No 18
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=35.26 E-value=1.6e+02 Score=23.58 Aligned_cols=72 Identities=14% Similarity=0.082 Sum_probs=44.9
Q ss_pred CchHHHHHHHHHhHcCCccceeeeeeecCCCCc--cHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHH
Q psy354 69 GLDDLGARCAQYKKDGCHFAKWRCVLKINVNTP--SYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQK 146 (207)
Q Consensus 69 GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~P--s~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~ 146 (207)
.++.+.+-+....++||..-. +..+ ..| +.......+..|.+.+.++.+.|+.--+||-. ++.+...+
T Consensus 100 ~~~~~~~~i~~a~~lG~~~v~----~~~G-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~-----~~~~~~~~ 169 (290)
T 3tva_A 100 RVAEMKEISDFASWVGCPAIG----LHIG-FVPESSSPDYSELVRVTQDLLTHAANHGQAVHLETGQ-----ESADHLLE 169 (290)
T ss_dssp HHHHHHHHHHHHHHHTCSEEE----ECCC-CCCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEECCS-----SCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEE----EcCC-CCcccchHHHHHHHHHHHHHHHHHHHcCCEEEEecCC-----CCHHHHHH
Confidence 455565555556678875432 2122 112 34566666777888888889999999999963 45555444
Q ss_pred HHHH
Q psy354 147 VTET 150 (207)
Q Consensus 147 vt~~ 150 (207)
+-++
T Consensus 170 l~~~ 173 (290)
T 3tva_A 170 FIED 173 (290)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
No 19
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=31.02 E-value=64 Score=27.99 Aligned_cols=48 Identities=17% Similarity=0.190 Sum_probs=34.0
Q ss_pred CCCchHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCc-eee
Q psy354 67 TQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRI-VPI 128 (207)
Q Consensus 67 t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GL-VPI 128 (207)
.+.++...+++++..+.||.|.==..++ +.+.+-+|...|++.|+ |||
T Consensus 156 ~~~~~~d~~~Lk~Kv~aGAdf~iTQ~ff--------------D~~~~~~f~~~~r~~Gi~vPI 204 (310)
T 3apt_A 156 SESLEADLRHFKAKVEAGLDFAITQLFF--------------NNAHYFGFLERARRAGIGIPI 204 (310)
T ss_dssp SSCHHHHHHHHHHHHHHHCSEEEECCCS--------------CHHHHHHHHHHHHHTTCCSCE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecccC--------------CHHHHHHHHHHHHHcCCCCeE
Confidence 4567788889998889999865433332 24567788899998874 454
No 20
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=30.66 E-value=1.1e+02 Score=24.12 Aligned_cols=121 Identities=21% Similarity=0.176 Sum_probs=68.4
Q ss_pred CceeEEccchhhhcCcccCCCchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHH--HHHHHHHh-H--cCCccc
Q psy354 14 DNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDL--GARCAQYK-K--DGCHFA 88 (207)
Q Consensus 14 ~~IsGvILfeETl~q~~~~G~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L--~~R~~~y~-~--~Ga~Fa 88 (207)
+.+-|+|++.-.-. ...+..+.+.++|| |-|=+|.... +....-+.|.- ...+.+|. + .|.
T Consensus 60 ~~vdgiIi~~~~~~----~~~~~~~~~~~~~i-PvV~~~~~~~------~~~~~V~~D~~~~g~~~~~~l~~~~~g~--- 125 (291)
T 3l49_A 60 QKPDAIIEQLGNLD----VLNPWLQKINDAGI-PLFTVDTATP------HAINNTTSNNYSIGAELALQMVADLGGK--- 125 (291)
T ss_dssp HCCSEEEEESSCHH----HHHHHHHHHHHTTC-CEEEESCCCT------TCSEEEEECHHHHHHHHHHHHHHHHTTC---
T ss_pred cCCCEEEEeCCChh----hhHHHHHHHHHCCC-cEEEecCCCC------CcCceEecChHHHHHHHHHHHHHHcCCC---
Confidence 35677777632110 11234556677786 6676776531 12233344433 22333333 3 453
Q ss_pred eeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHH
Q psy354 89 KWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAA 154 (207)
Q Consensus 89 KWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~ 154 (207)
|.+.-+... ++.. .....+.-|-+.++++|=+++++++....++.+.+..++.+++.|..
T Consensus 126 --~~i~~i~~~-~~~~---~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (291)
T 3l49_A 126 --GNVLVFNGF-YSVP---VCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTK 185 (291)
T ss_dssp --EEEEEECSC-TTSH---HHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHH
T ss_pred --ceEEEEeCC-CCCc---hHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHh
Confidence 344444422 2221 12344566777788886568999998888999999888888877753
No 21
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=29.95 E-value=8.1 Score=30.56 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=29.1
Q ss_pred cceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCcee
Q psy354 87 FAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVP 127 (207)
Q Consensus 87 FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVP 127 (207)
|.-|+..+..-+.......+......+++|-+.|.++||.|
T Consensus 111 ~~~~~G~l~~~~~~g~~~~~~d~~~~~~~~~~~~~~~g~~~ 151 (159)
T 3ebr_A 111 FNIVAGELLYLDDKDNIIAVENWKTSMDRYLNYCKAHGIRP 151 (159)
T ss_dssp EEEEESCEEEECTTCCEEEEECHHHHHHHHHHHHHHTTCCC
T ss_pred EEEecCccEecCCCCCEEEEcCHHHHHHHHHHHHHHcCCCc
Confidence 34345445544444555566667888999999999999987
No 22
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=29.76 E-value=88 Score=27.23 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=32.4
Q ss_pred CCCchHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCc-eeee
Q psy354 67 TQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRI-VPIV 129 (207)
Q Consensus 67 t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GL-VPIV 129 (207)
.+.++...+|+++..+.||.|.==..++ +++.+-+|...|.+.|+ |||+
T Consensus 159 a~~~~~d~~~Lk~KvdAGAdf~iTQ~ff--------------D~~~~~~f~~~~r~~Gi~vPIi 208 (304)
T 3fst_A 159 AKSAQADLLNLKRKVDAGANRAITQFFF--------------DVESYLRFRDRCVSAGIDVEII 208 (304)
T ss_dssp CSCHHHHHHHHHHHHHHTCCEEEECCCS--------------CHHHHHHHHHHHHHTTCCSCEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCccC--------------CHHHHHHHHHHHHhcCCCCcEE
Confidence 4567778899999999999983222221 14456677788887764 4543
No 23
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=28.22 E-value=1.2e+02 Score=23.92 Aligned_cols=81 Identities=14% Similarity=-0.014 Sum_probs=49.0
Q ss_pred CchHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccC---CC----CCCch
Q psy354 69 GLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRIVPIVEPEVL---PD----GPHDL 141 (207)
Q Consensus 69 GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl---~d----g~H~i 141 (207)
.++.+.+-+....++||..-. ..+.-+...|....+...+..|.+.+..+++.|+.--+||--- .+ --++.
T Consensus 82 ~~~~~~~~i~~A~~lG~~~v~--~~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~~~~ 159 (281)
T 3u0h_A 82 ELSLLPDRARLCARLGARSVT--AFLWPSMDEEPVRYISQLARRIRQVAVELLPLGMRVGLEYVGPHHLRHRRYPFVQSL 159 (281)
T ss_dssp HHHTHHHHHHHHHHTTCCEEE--EECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCGGGCCSSEECCCSH
T ss_pred HHHHHHHHHHHHHHcCCCEEE--EeecCCCCCcchhhHHHHHHHHHHHHHHHHHcCCEEEEEeccccccccccccccCCH
Confidence 344454455555678976532 1111112235566777778888888899999999999998531 11 13456
Q ss_pred HHHHHHHHHH
Q psy354 142 ERAQKVTETV 151 (207)
Q Consensus 142 ~~c~~vt~~v 151 (207)
+.+.++-++|
T Consensus 160 ~~~~~l~~~v 169 (281)
T 3u0h_A 160 ADLKTFWEAI 169 (281)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6665555554
No 24
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=26.87 E-value=79 Score=28.49 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=40.4
Q ss_pred CchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHHhHcCCccceeeee
Q psy354 34 TPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQYKKDGCHFAKWRCV 93 (207)
Q Consensus 34 ~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR~V 93 (207)
++++++++++|+-+||=++.|..-..+.++ .+|-..+. ++.|.+-|..|=||-..
T Consensus 80 ~~l~~~i~~~Glk~Giw~~~g~~~c~~~Pg---s~~~~~~d--~~~~~~wGvdylK~D~~ 134 (417)
T 1szn_A 80 DGLAKKVHALGLKLGIYSTAGTATCAGYPA---SLGYEDVD--AADFADWGVDYLKYDNC 134 (417)
T ss_dssp HHHHHHHHHTTCEEEEEEESSSBCTTSCBC---CTTCHHHH--HHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHcCCEEEEEeCCCCchhccCcc---hHhHHHHH--HHHHHHcCCCEEEECCC
Confidence 367889999999999999988654444444 33433332 56688899999999876
No 25
>3ijd_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: C2F; 2.00A {Clostridium thermocellum atcc 27405}
Probab=26.53 E-value=46 Score=29.40 Aligned_cols=57 Identities=25% Similarity=0.401 Sum_probs=37.7
Q ss_pred chHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCCc--eeeeccccCCCC
Q psy354 70 LDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANRI--VPIVEPEVLPDG 137 (207)
Q Consensus 70 LD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~GL--VPIVEPEVl~dg 137 (207)
++.-.+|+++..++||.|.==..++... .. -+-+.+|+.-|+++|+ |||+ |-|++=.
T Consensus 164 ~~~d~~~Lk~KvdAGAdf~ITQ~ffD~e-------~~---~~f~~~~~~~~r~~Gi~~vPIi-pGImPi~ 222 (315)
T 3ijd_A 164 NTDEHLRIIDKINKGCKYFITQAVYNVE-------AA---KDFLSDYYYYSKNNNLKMVPII-FTLTPCG 222 (315)
T ss_dssp HSCHHHHHHHHHHTTCCEEEESCCCCHH-------HH---HHHHHHHHHHHHHTTBCCCCEE-EEECCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEccccCCHH-------HH---HHHHHHHHHHHHHCCCCCCcEE-EEeeecC
Confidence 4555678888889999887655554222 11 1122355588999999 8988 8887643
No 26
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=25.93 E-value=3.1e+02 Score=23.42 Aligned_cols=77 Identities=10% Similarity=0.159 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHhCCceee------eccccCCCCCCchHHHHHHHHHHHHHHHHHHHhCCccccccccccccccCCC
Q psy354 107 LENANVLARYASICQANRIVPI------VEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQ 180 (207)
Q Consensus 107 ~~na~~LAryA~icQ~~GLVPI------VEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~~~~V~leG~lLKpnMV~pG~ 180 (207)
.++-..+.+..+.+.+.|+-.- +-+| .+|.+|.+...++.+++. +.|++- ..+ .
T Consensus 118 ~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~Ga~~--------i~l--~ 177 (307)
T 1ydo_A 118 SESLHILKQVNNDAQKANLTTRAYLSTVFGCP--YEKDVPIEQVIRLSEALF--------EFGISE--------LSL--G 177 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECTTCBT--TTBCCCHHHHHHHHHHHH--------HHTCSC--------EEE--E
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEEecCC--cCCCCCHHHHHHHHHHHH--------hcCCCE--------EEE--c
Confidence 3444445555566688998542 2333 246788887666665543 334431 111 1
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCC
Q psy354 181 SSPKKYSAQEIAQATVQALQRTVP 204 (207)
Q Consensus 181 ~~~~~~~~e~vA~~Tv~~l~rtvP 204 (207)
|...-.+|+++.+ .++.|++.+|
T Consensus 178 DT~G~~~P~~v~~-lv~~l~~~~~ 200 (307)
T 1ydo_A 178 DTIGAANPAQVET-VLEALLARFP 200 (307)
T ss_dssp CSSCCCCHHHHHH-HHHHHHTTSC
T ss_pred CCCCCcCHHHHHH-HHHHHHHhCC
Confidence 4344678999887 4777887776
No 27
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=23.68 E-value=2.6e+02 Score=21.78 Aligned_cols=79 Identities=18% Similarity=0.077 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHhHcCCccceeeeeeecCC----CCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCC---C--CCC
Q psy354 69 GLDDLGARCAQYKKDGCHFAKWRCVLKINV----NTPSYQAILENANVLARYASICQANRIVPIVEPEVLP---D--GPH 139 (207)
Q Consensus 69 GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~----~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~---d--g~H 139 (207)
.++.+.+-+....++||..-. +..+. ..+...++...+..|.+-+.++++.|+.--+||.--. . --+
T Consensus 81 ~~~~~~~~i~~a~~lG~~~v~----~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~ 156 (275)
T 3qc0_A 81 AIDDNRRAVDEAAELGADCLV----LVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPLAIEPLHPMYAADRACVN 156 (275)
T ss_dssp HHHHHHHHHHHHHHTTCSCEE----EECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCCGGGTTTTBSCC
T ss_pred HHHHHHHHHHHHHHhCCCEEE----EeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCEEEEeECCCcccCCccccC
Confidence 345555555556678875432 22221 1344667777788888889999999999999983110 1 123
Q ss_pred chHHHHHHHHHH
Q psy354 140 DLERAQKVTETV 151 (207)
Q Consensus 140 ~i~~c~~vt~~v 151 (207)
+.+...++-+++
T Consensus 157 ~~~~~~~l~~~~ 168 (275)
T 3qc0_A 157 TLGQALDICETL 168 (275)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 555555555543
No 28
>1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A*
Probab=23.30 E-value=1.3e+02 Score=23.89 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy354 107 LENANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALN 160 (207)
Q Consensus 107 ~~na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~vt~~vL~~v~~~L~ 160 (207)
.+++..+ ++..+++|-+| ++=++..+|.|+-....+.-...|.-+|++|.
T Consensus 230 ~~~~~~~---~~~L~~~g~~~-~~~~~~~~g~H~~~~w~~~l~~~l~~l~~~l~ 279 (280)
T 1dqz_A 230 LRTNQTF---RDTYAADGGRN-GVFNFPPNGTHSWPYWNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHH---HHHHHHTTCCS-EEEECCSCCCSSHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHH---HHHHHhCCCCc-eEEEecCCCccChHHHHHHHHHHHHHHHHHhC
Confidence 3444444 45667888334 34445568999998888888888998888874
No 29
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=23.14 E-value=2.3e+02 Score=22.05 Aligned_cols=79 Identities=10% Similarity=-0.063 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHhHcCCccceeeeeeecC---CCCccHHHHHHHHHHHHHHHHHHHhCCceeeeccccCCC--C--CCch
Q psy354 69 GLDDLGARCAQYKKDGCHFAKWRCVLKIN---VNTPSYQAILENANVLARYASICQANRIVPIVEPEVLPD--G--PHDL 141 (207)
Q Consensus 69 GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~---~~~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEPEVl~d--g--~H~i 141 (207)
.++.+..-+....++||..-. +..+ .+.+...+....+..|.+-+..+++.|+.--+||---.+ + -+++
T Consensus 83 ~~~~~~~~i~~a~~lG~~~v~----~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~ 158 (260)
T 1k77_A 83 AHADIDLALEYALALNCEQVH----VMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSSQ 158 (260)
T ss_dssp HHHHHHHHHHHHHHTTCSEEE----CCCCBCCTTSCHHHHHHHHHHHHHHHHHHHGGGTCEEEECCCCTTTSTTBSCCSH
T ss_pred HHHHHHHHHHHHHHcCCCEEE----ECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCccCCCcCccCCH
Confidence 355555555556678876432 2112 123456677777888888889999999999999952111 1 2355
Q ss_pred HHHHHHHHHH
Q psy354 142 ERAQKVTETV 151 (207)
Q Consensus 142 ~~c~~vt~~v 151 (207)
+.+.++-+++
T Consensus 159 ~~~~~l~~~~ 168 (260)
T 1k77_A 159 YQALAIVEEV 168 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555554443
No 30
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=22.56 E-value=2.5e+02 Score=21.13 Aligned_cols=91 Identities=11% Similarity=0.105 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhCCceeeecc----ccCCCCCC--------chH--HHHHHHHHHHHHHHHHHH-hCCccccccccc
Q psy354 108 ENANVLARYASICQANRIVPIVEP----EVLPDGPH--------DLE--RAQKVTETVLAAVYKALN-DHHVYLEGTLLK 172 (207)
Q Consensus 108 ~na~~LAryA~icQ~~GLVPIVEP----EVl~dg~H--------~i~--~c~~vt~~vL~~v~~~L~-~~~V~leG~lLK 172 (207)
.|..........|+++| ..||=. -+..+.+. +.. ...+...|...+.+..+. ..+ +.-++|.
T Consensus 81 ~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~~~~~--i~~~ivr 157 (224)
T 3h2s_A 81 LHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNAN--VNWIGIS 157 (224)
T ss_dssp HHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCGGGGGSTTHHHHHHHHHHHHHHTTCTT--SCEEEEE
T ss_pred HHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCCCCccchhhHHHHHHHHHHHHHHhcCC--CcEEEEc
Confidence 45555555667778888 666543 11111110 111 223333444444555554 445 4458889
Q ss_pred ccccc-CCCCC---------------CCCCCHHHHHHHHHHHhhc
Q psy354 173 PNMVT-AGQSS---------------PKKYSAQEIAQATVQALQR 201 (207)
Q Consensus 173 pnMV~-pG~~~---------------~~~~~~e~vA~~Tv~~l~r 201 (207)
|++|. ||... ....++++||++.+.++.+
T Consensus 158 p~~v~g~~~~~~~~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~ 202 (224)
T 3h2s_A 158 PSEAFPSGPATSYVAGKDTLLVGEDGQSHITTGNMALAILDQLEH 202 (224)
T ss_dssp ECSBCCCCCCCCEEEESSBCCCCTTSCCBCCHHHHHHHHHHHHHS
T ss_pred CccccCCCcccCceecccccccCCCCCceEeHHHHHHHHHHHhcC
Confidence 98886 43221 1246899999999999875
No 31
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A*
Probab=22.10 E-value=94 Score=29.13 Aligned_cols=58 Identities=10% Similarity=0.172 Sum_probs=43.1
Q ss_pred CchHHHHhhCCceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHHhHcCCccceeeeeeec
Q psy354 34 TPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKI 96 (207)
Q Consensus 34 ~~~~~~L~~~gIvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i 96 (207)
++++++++++|+-+||=++-|..--++.++ .|+-...-++.|.+-|..|=||-.....
T Consensus 97 k~Lad~ih~~GlKfGIw~~pG~~tC~~~pG-----sl~~~~~da~~fa~WGVDylK~D~c~~~ 154 (479)
T 3lrk_A 97 GHVADHLHNNSFLFGMYSSAGEYTCAGYPG-----SLGREEEDAQFFANNRVDYLKYDNCYNK 154 (479)
T ss_dssp HHHHHHHHHTTCEEEEEEESSSBCTTSSBC-----CTTCHHHHHHHHHHTTCCEEEEECTTCT
T ss_pred HHHHHHHHHCCCeeEEEecCccccccCCCc-----hhHHHHHHHHHHHHhCCcEEEEccCCCc
Confidence 468899999999999999998765444443 2333444467788999999999866543
No 32
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Probab=22.01 E-value=1.2e+02 Score=25.60 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhCCceeeeccccCCCCCCchHHHHH--HHHHHHHHHHHHHHhCCcccccccccccccc--C----CC
Q psy354 109 NANVLARYASICQANRIVPIVEPEVLPDGPHDLERAQK--VTETVLAAVYKALNDHHVYLEGTLLKPNMVT--A----GQ 180 (207)
Q Consensus 109 na~~LAryA~icQ~~GLVPIVEPEVl~dg~H~i~~c~~--vt~~vL~~v~~~L~~~~V~leG~lLKpnMV~--p----G~ 180 (207)
.-..+++=++.+.++||.||+ +=|+.--+|-+- -|+.|+. ++|.. |... +++-.|. | |.
T Consensus 99 td~~v~~Kv~~Al~~GL~pI~-----CvGEtleere~g~~~t~~vv~---~Ql~~----l~~~-~~~~vIAYEPvWAIGT 165 (233)
T 2jgq_A 99 SPSFLKEKFDFFKSKNFKIVY-----CIGEELTTREKGFKAVKEFLS---EQLEN----IDLN-YPNLVVAYEPIWAIGT 165 (233)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE-----EECCCHHHHHHCHHHHHHHHH---HHHTT----SCTT-CTTEEEEECCGGGTTC
T ss_pred CHHHHHHHHHHHHHCCCEEEE-----EcCCcHHHHhcCchhHHHHHH---HHHHh----hhhh-ccceEEEEeCHHHhCC
Confidence 345566677888999999997 345554555554 5666654 44443 2222 3333332 2 32
Q ss_pred CCCCCCCHHHHHHHHHHHhhccC
Q psy354 181 SSPKKYSAQEIAQATVQALQRTV 203 (207)
Q Consensus 181 ~~~~~~~~e~vA~~Tv~~l~rtv 203 (207)
...+|||++.+ +...+|+.+
T Consensus 166 --G~~At~e~a~e-v~~~IR~~l 185 (233)
T 2jgq_A 166 --KKSASLEDIYL-THGFLKQIL 185 (233)
T ss_dssp ----CCCHHHHHH-HHHHHHHHS
T ss_pred --CCCCCHHHHHH-HHHHHHHHH
Confidence 24678888665 666666544
No 33
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=21.77 E-value=4.2e+02 Score=23.42 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=57.1
Q ss_pred HHHHHHHhHcCCccceeeeeeecCCCCccHHHH-HHHHHHHHHHHHHHHhCCceeeeccccC---CCCCCchHHHHHHHH
Q psy354 74 GARCAQYKKDGCHFAKWRCVLKINVNTPSYQAI-LENANVLARYASICQANRIVPIVEPEVL---PDGPHDLERAQKVTE 149 (207)
Q Consensus 74 ~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI-~~na~~LAryA~icQ~~GLVPIVEPEVl---~dg~H~i~~c~~vt~ 149 (207)
.+++ +++||..-|--. ..+.+.+. .+ .++...|.|.++-|++.|+==++||=.- +.++||.+.. ++..
T Consensus 116 ve~a---~~~GADAVk~lv--~~g~d~~~--e~~~~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a-~~~p 187 (332)
T 3iv3_A 116 IKRL---KEAGADAVKFLL--YYDVDGDP--QVNVQKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFA-KVKV 187 (332)
T ss_dssp HHHH---HHTTCSEEEEEE--EECTTSCH--HHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHH-TTHH
T ss_pred HHHH---HHcCCCEEEEEE--EcCCCchH--HHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhh-ccCH
Confidence 4555 588999999543 34322222 23 3677889999999999999777776332 2357777663 4445
Q ss_pred HHHHHHHHHH--HhCCcccccccccccc
Q psy354 150 TVLAAVYKAL--NDHHVYLEGTLLKPNM 175 (207)
Q Consensus 150 ~vL~~v~~~L--~~~~V~leG~lLKpnM 175 (207)
.++....+.+ .+.|+++ +|-.+
T Consensus 188 ~~V~~a~R~~~~~elGaDv----~Kve~ 211 (332)
T 3iv3_A 188 HKVNDAMKVFSAERFGIDV----LKVEV 211 (332)
T ss_dssp HHHHHHHHHHTSGGGCCSE----EEECC
T ss_pred HHHHHHHHHHhhcCcCCcE----EEEec
Confidence 5566667777 3446654 55443
No 34
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=21.60 E-value=3e+02 Score=24.53 Aligned_cols=87 Identities=5% Similarity=-0.121 Sum_probs=38.3
Q ss_pred CceeeEecCCCcccCCC----CCCCCCCCCchHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHH
Q psy354 44 GIIPGIKVDKGVVPLMG----SEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASI 119 (207)
Q Consensus 44 gIvpgIKvDkGl~pl~g----~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~i 119 (207)
.+-.+||||.|...-.+ .-|..+ +.+..+.++++ +.|.++.=.-+ .++..........++...+.+.+..
T Consensus 148 ~~~v~lRin~g~~~~~~~~~~RfG~~~-~~~~~~~~~~~---~~~l~~~Gl~~--H~gs~~~d~~~~~~~~~~~~~~~~~ 221 (448)
T 3btn_A 148 NAKVLLHIATEDNIGGEDGNMKFGTTL-KNCRHLLECAK---ELDVQIIGVKF--HVSSACKEYQVYVHALSDARCVFDM 221 (448)
T ss_dssp TCEEEEEBCCCC--------CCCCBCH-HHHHHHHHHHH---HHTCEEEEEEC--CCCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCCCccCCCCCCcCCCCH-HHHHHHHHHHH---hCCCCEEEEEE--ECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45679999998543211 112111 11234444443 23533222211 1222211222344444445556666
Q ss_pred HHhCCceeeeccccCCCCCC
Q psy354 120 CQANRIVPIVEPEVLPDGPH 139 (207)
Q Consensus 120 cQ~~GLVPIVEPEVl~dg~H 139 (207)
..+.|+-+ +.+.+-|.+
T Consensus 222 ~~~~G~~~---~~ldiGGG~ 238 (448)
T 3btn_A 222 AGEFGFTM---NMLDIGGGF 238 (448)
T ss_dssp HHHTTCCC---CEEECCSCC
T ss_pred HHHcCCCC---CEEEeCCCc
Confidence 67888521 234567777
No 35
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=20.52 E-value=50 Score=28.69 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=18.1
Q ss_pred CCCchHHHHHHHHHhHcCCc
Q psy354 67 TQGLDDLGARCAQYKKDGCH 86 (207)
Q Consensus 67 t~GLD~L~~R~~~y~~~Ga~ 86 (207)
..|+|.+.+|+..|.+.||+
T Consensus 162 ~~g~~~ai~Ra~ay~eAGAd 181 (290)
T 2hjp_A 162 GLGQQEAVRRGQAYEEAGAD 181 (290)
T ss_dssp TCCHHHHHHHHHHHHHTTCS
T ss_pred cccHHHHHHHHHHHHHcCCc
Confidence 45799999999999999987
No 36
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=20.46 E-value=1.8e+02 Score=25.90 Aligned_cols=94 Identities=6% Similarity=-0.107 Sum_probs=52.4
Q ss_pred ceeeEecCCCcccCCCCCCCCCCCCchHHHHHHHHHhHcCCccceeeeeeecCCCCccHHHHHHHHHHHHHHHHHHHhCC
Q psy354 45 IIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQANR 124 (207)
Q Consensus 45 IvpgIKvDkGl~pl~g~~~e~~t~GLD~L~~R~~~y~~~Ga~FaKWR~Vi~i~~~~Ps~~aI~~na~~LAryA~icQ~~G 124 (207)
+=.-||||.|.- -.|. .+.+.+..|.++++++. | .-+.+-+........+...+.++...+.+.+...++.|
T Consensus 167 ~~V~l~VdtG~~-R~Gv---~~~~e~~~l~~~i~~~~--~--~l~l~Gl~th~g~~~~~~~~~~~~~~l~~l~~~L~~~g 238 (426)
T 3gwq_A 167 LQVLLELGVPGG-RTGV---RDAAQRNAVLEAITRYP--D--TLKLAGVELYEGVLKEEHEVREFLQSAVAVTRELVEQE 238 (426)
T ss_dssp EEEEEEECCTTS-SSSB---CSHHHHHHHHHHHHTST--T--TEEEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCC-cCCC---CCHHHHHHHHHHHHcCC--C--CEEEEeEEEEccccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 445799999932 1132 21123445555543221 0 23555666554233445556677777777777777788
Q ss_pred ceeeeccccCCCCCCchHHHHH
Q psy354 125 IVPIVEPEVLPDGPHDLERAQK 146 (207)
Q Consensus 125 LVPIVEPEVl~dg~H~i~~c~~ 146 (207)
+..+=-|++-|-|..|.+...+
T Consensus 239 ~~~~~~~~lS~G~S~~~~~a~~ 260 (426)
T 3gwq_A 239 RFARAPAVLSGAGSAWYDVVAE 260 (426)
T ss_dssp CCSSSSEEEEECCSTTHHHHHH
T ss_pred CCCCCCCEEEecCChhHHHHHh
Confidence 6322234567788888776554
No 37
>2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15
Probab=20.36 E-value=1.3e+02 Score=26.17 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=30.4
Q ss_pred HHHHHHhHcCCccceeeeeeecCCC-CccHHHHHHHHHHHHHHHHHHHhCCceeeecc
Q psy354 75 ARCAQYKKDGCHFAKWRCVLKINVN-TPSYQAILENANVLARYASICQANRIVPIVEP 131 (207)
Q Consensus 75 ~R~~~y~~~Ga~FaKWR~Vi~i~~~-~Ps~~aI~~na~~LAryA~icQ~~GLVPIVEP 131 (207)
+.+..+.+.| ..|+.|.=. .++..| +|......|++.|.++|++|.|-+
T Consensus 231 ~~l~~~~~~G------kpV~~iEY~~~~~~~~--~~~~~i~~~~~~~~~~Gf~pyvs~ 280 (309)
T 2aam_A 231 EYLIRLNRKG------KFILSVDYVDDGSDSF--ENISRILDYYEKAKRNGCIPYAAR 280 (309)
T ss_dssp HHHHHHHHTT------CEEEEEEEEECSSCBH--HHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHcC------CcEEEEEeCCCccchh--hhHHHHHHHHHHHHHcCCEEEeCC
Confidence 3334445555 468888511 112222 444557778889999999999976
No 38
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=20.22 E-value=13 Score=24.10 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=18.1
Q ss_pred cccccccccccccCCCCCCCCCCHHHHHHHH
Q psy354 165 YLEGTLLKPNMVTAGQSSPKKYSAQEIAQAT 195 (207)
Q Consensus 165 ~leG~lLKpnMV~pG~~~~~~~~~e~vA~~T 195 (207)
|||.+|.||- -||.+ +||||.|.+-
T Consensus 1 ~~~~~l~~P~--~Pg~~----aspEela~Y~ 25 (41)
T 2l60_A 1 YLERELKKLE--RELKK----LSPEELNRYY 25 (41)
T ss_dssp CCHHHHHHHH--HHHTT----SCHHHHHHHH
T ss_pred CcccccCCCC--CCCCC----CCHHHHHHHH
Confidence 5777888873 57655 4799999863
Done!