RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy354
(207 letters)
>gnl|CDD|215833 pfam00274, Glycolytic, Fructose-bisphosphate aldolase class-I.
Length = 348
Score = 405 bits (1044), Expect = e-144
Identities = 145/207 (70%), Positives = 170/207 (82%), Gaps = 1/207 (0%)
Query: 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMG 60
R+LLFT+ +G+ ISGVILF ETLYQK DDG PFV+LLK++GI+PGIKVDKG+VPL G
Sbjct: 45 YRELLFTTPG-LGEYISGVILFEETLYQKTDDGKPFVDLLKEKGIVPGIKVDKGLVPLAG 103
Query: 61 SEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASIC 120
++ E TTQGLD L RCA+Y K G FAKWR VLKI+ NTPS AI ENANVLARYA+IC
Sbjct: 104 TDGETTTQGLDGLAERCAEYYKQGARFAKWRAVLKISPNTPSELAIEENANVLARYAAIC 163
Query: 121 QANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQ 180
Q N +VPIVEPE+L DG HDLER Q+VTE VLAAV+KALNDHHV LEGTLLKPNMVT G
Sbjct: 164 QQNGLVPIVEPEILLDGDHDLERCQEVTEKVLAAVFKALNDHHVMLEGTLLKPNMVTPGA 223
Query: 181 SSPKKYSAQEIAQATVQALQRTVPAAV 207
PKK + +++A+ATV+AL+RTVP AV
Sbjct: 224 DCPKKATPEDVAEATVRALRRTVPPAV 250
>gnl|CDD|188635 cd00948, FBP_aldolase_I_a, Fructose-1,6-bisphosphate aldolase.
Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes
the cleavage of fructose 1,6-bisphosphate to
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate (DHAP). This family includes proteins found in
vertebrates, plants, and bacterial plant pathogens.
Mutations in the aldolase genes in humans cause
hemolytic anemia and hereditary fructose intolerance.
The enzyme is a member of the class I aldolase family,
which utilizes covalent catalysis through a Schiff base
formed between a lysine residue of the enzyme and ketose
substrates.
Length = 330
Score = 389 bits (1001), Expect = e-138
Identities = 143/206 (69%), Positives = 165/206 (80%), Gaps = 1/206 (0%)
Query: 2 RKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGS 61
R+LLFT+ +G ISGVILF ETLYQK DDG PFV++LK++GI+PGIKVDKG+VPL G+
Sbjct: 48 RELLFTTPG-LGQYISGVILFEETLYQKTDDGKPFVDILKEKGIVPGIKVDKGLVPLAGT 106
Query: 62 EDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQ 121
+ E TTQGLD L RCA+Y K G FAKWR VLKI TPS AI ENA+ LARYA+ICQ
Sbjct: 107 DGETTTQGLDGLAERCAKYYKQGARFAKWRAVLKIGNGTPSELAIKENAHGLARYAAICQ 166
Query: 122 ANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQS 181
N +VPIVEPEVL DG HD+ER Q+VTE VLAAVYKALNDHHV LEGTLLKPNMVT G
Sbjct: 167 ENGLVPIVEPEVLMDGDHDIERCQEVTEKVLAAVYKALNDHHVLLEGTLLKPNMVTPGAD 226
Query: 182 SPKKYSAQEIAQATVQALQRTVPAAV 207
KK S +E+A+ TV+AL+RTVPAAV
Sbjct: 227 CKKKASPEEVAEYTVRALRRTVPAAV 252
>gnl|CDD|178074 PLN02455, PLN02455, fructose-bisphosphate aldolase.
Length = 358
Score = 319 bits (819), Expect = e-110
Identities = 134/207 (64%), Positives = 155/207 (74%), Gaps = 2/207 (0%)
Query: 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMG 60
+R+LLFT+ + +SGVILF ETLYQK DG PFV++LK+ G++PGIKVDKG V L G
Sbjct: 55 LRELLFTAPGAL-QYLSGVILFEETLYQKTSDGKPFVDVLKENGVLPGIKVDKGTVELAG 113
Query: 61 SEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASIC 120
+ E TTQGLD LGARCA+Y + G FAKWR VLKI PS AI ENA LARYA IC
Sbjct: 114 TNGETTTQGLDGLGARCAKYYEAGARFAKWRAVLKIGPTEPSELAIQENAQGLARYAIIC 173
Query: 121 QANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQ 180
Q N +VPIVEPE+L DG HD+++ VTE VLAA YKALNDHHV LEGTLLKPNMVT G
Sbjct: 174 QENGLVPIVEPEILVDGSHDIKKCAAVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGS 233
Query: 181 SSPKKYSAQEIAQATVQALQRTVPAAV 207
SP K S + IA+ TV+ALQRTVP AV
Sbjct: 234 DSP-KVSPEVIAEYTVRALQRTVPPAV 259
>gnl|CDD|240231 PTZ00019, PTZ00019, fructose-bisphosphate aldolase; Provisional.
Length = 355
Score = 314 bits (806), Expect = e-108
Identities = 126/208 (60%), Positives = 149/208 (71%), Gaps = 3/208 (1%)
Query: 2 RKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGS 61
R+LLFT+ + + ISGVILF ET+YQKA G FVELLK++GI+PGIKVDKG+V L G+
Sbjct: 51 RELLFTT-EGLEQYISGVILFEETVYQKAPSGKTFVELLKEKGIVPGIKVDKGLVTLPGT 109
Query: 62 EDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINV--NTPSYQAILENANVLARYASI 119
+ E +TQGLD L R +Y K G FAKWR VLKI+ PS AI ENA LARYA+I
Sbjct: 110 DGETSTQGLDGLAERAKKYYKAGARFAKWRAVLKIDPAKGKPSELAIQENAWTLARYAAI 169
Query: 120 CQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAG 179
CQ N +VPIVEPE+L DG H +E QKVTE VLA V+KALNDH V LEG LLKPNMVT G
Sbjct: 170 CQENGLVPIVEPEILIDGSHSIEVCQKVTEKVLAEVFKALNDHGVLLEGCLLKPNMVTPG 229
Query: 180 QSSPKKYSAQEIAQATVQALQRTVPAAV 207
K + QE+A TV+ L RTVP A+
Sbjct: 230 SDCGVKATPQEVAFYTVRTLSRTVPPAL 257
>gnl|CDD|188629 cd00344, FBP_aldolase_I, Fructose-bisphosphate aldolase class I.
Fructose-bisphosphate aldolase class I.
Fructose-1,6-bisphosphate aldolase is an enzyme of the
glycolytic and gluconeogenic pathways found in
vertebrates, plants, and bacteria. The enzyme catalyzes
the cleavage of fructose 1,6-bisphosphate to
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate (DHAP). Mutations in the aldolase genes in
humans cause hemolytic anemia and hereditary fructose
intolerance. The enzyme is a member of the class I
aldolase family, which utilizes covalent catalysis
through a Schiff base formed between a lysine residue of
the enzyme and ketose substrates. Although structurally
similar, the class II aldolases use a different
mechanism and are believed to have an independent
evolutionary origin.
Length = 328
Score = 256 bits (654), Expect = 8e-86
Identities = 147/207 (71%), Positives = 167/207 (80%)
Query: 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMG 60
R+LL T+D + I GVILFHETLYQKADDG PF +++K +G + GIKVDKGVVPL G
Sbjct: 47 YRQLLLTADDRVNPRIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAG 106
Query: 61 SEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASIC 120
+ E TTQGLD L RCAQYKKDG FAKWRCVLKI +TPS AI+ENANVLARYASIC
Sbjct: 107 TNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASIC 166
Query: 121 QANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQ 180
Q N IVPIVEPE+LPDG HDL+R Q VTE VLAAVYKAL+DHH+YLEGTLLKPNMVT G
Sbjct: 167 QQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGH 226
Query: 181 SSPKKYSAQEIAQATVQALQRTVPAAV 207
+ +K+S +EIA ATV AL+RTVP AV
Sbjct: 227 ACTQKFSHEEIAMATVTALRRTVPPAV 253
>gnl|CDD|226116 COG3588, COG3588, Fructose-1,6-bisphosphate aldolase [Carbohydrate
transport and metabolism].
Length = 332
Score = 233 bits (597), Expect = 6e-77
Identities = 100/207 (48%), Positives = 132/207 (63%), Gaps = 1/207 (0%)
Query: 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMG 60
MR+ LFTS + D I G ILF ET+ QKAD G P L K++GI+PGIKVDKG+ PL G
Sbjct: 48 MRERLFTSPDFMEDYILGAILFEETMDQKADGGYPADYLWKEKGIVPGIKVDKGLKPLAG 107
Query: 61 SEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASIC 120
+ E T+GLD L R +Y G FAKWR V+KI PS+ I N + LA YA++C
Sbjct: 108 VQLEKPTEGLDGLLKRAKEYHIFGARFAKWRSVIKIADGIPSWGGIKANVHQLAEYAALC 167
Query: 121 QANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQ 180
QA +VPIVEPEV DG HD R+++VT+ L + ALN+ V + G +LK +MV +G+
Sbjct: 168 QAAGLVPIVEPEVDIDGDHDKARSEEVTKAELRKLLNALNEERVVMLGLILKTSMVISGK 227
Query: 181 SSPKKYSAQEIAQATVQALQRTVPAAV 207
S + S E+A+ T+ +L TVPA V
Sbjct: 228 KSREA-SPDEVAEDTLYSLLSTVPAVV 253
>gnl|CDD|215234 PLN02425, PLN02425, probable fructose-bisphosphate aldolase.
Length = 390
Score = 207 bits (528), Expect = 5e-66
Identities = 106/206 (51%), Positives = 135/206 (65%), Gaps = 2/206 (0%)
Query: 2 RKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGS 61
R+LL T+ +G+ ISG ILF ETLYQ DG FV+ L+ + I+PGIKVDKG+VPL GS
Sbjct: 91 RQLLLTTPG-LGEYISGAILFEETLYQSTTDGKKFVDCLRDQNIVPGIKVDKGLVPLPGS 149
Query: 62 EDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQ 121
+E QGLD L +R A+Y K G FAKWR V+ I PS A+ E A LARYA+I Q
Sbjct: 150 NNESWCQGLDGLASRSAEYYKQGARFAKWRTVVSIPCG-PSALAVKEAAWGLARYAAISQ 208
Query: 122 ANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQS 181
N +VPIVEPE+L DG H +ER +V E V + V+ L ++V EG LLKP+MVT G
Sbjct: 209 DNGLVPIVEPEILLDGDHPIERTLEVAEKVWSEVFFYLAQNNVLFEGILLKPSMVTPGAE 268
Query: 182 SPKKYSAQEIAQATVQALQRTVPAAV 207
+K S + IA+ T+ L+R VP AV
Sbjct: 269 HKEKASPETIAKYTLTMLRRRVPPAV 294
>gnl|CDD|177872 PLN02227, PLN02227, fructose-bisphosphate aldolase I.
Length = 399
Score = 181 bits (461), Expect = 7e-56
Identities = 97/205 (47%), Positives = 131/205 (63%), Gaps = 1/205 (0%)
Query: 3 KLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSE 62
+ L S +G ISG ILF ETLYQ DG V++L ++ I+PGIKVDKG+VPL+GS
Sbjct: 100 RTLLVSAPGLGQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLVGSY 159
Query: 63 DECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQA 122
DE QGLD L +R A Y + G FAKWR V+ I N PS A+ E A LARYA+I Q
Sbjct: 160 DESWCQGLDGLASRTAAYYQQGARFAKWRTVVSIP-NGPSALAVKEAAWGLARYAAISQD 218
Query: 123 NRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQSS 182
+ +VPIVEPE++ DG H ++R V E V A V+ L ++V EG LLKP+MVT G +
Sbjct: 219 SGLVPIVEPEIMLDGEHGIDRTYDVAEKVWAEVFFYLAQNNVMFEGILLKPSMVTPGAEA 278
Query: 183 PKKYSAQEIAQATVQALQRTVPAAV 207
+ + +++A T++ L+ +P AV
Sbjct: 279 TDRATPEQVASYTLKLLRNRIPPAV 303
>gnl|CDD|188636 cd00949, FBP_aldolase_I_bact, Fructose-1.6-bisphosphate aldolase
found in gram +/- bacteria. Fructose-1.6-bisphosphate
aldolase found in gram +/- bacteria. The enzyme
catalyzes the cleavage of fructose 1,6-bisphosphate to
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate (DHAP). The enzyme is member of the class I
aldolase family, which utilizes covalent catalysis
through a Schiff base formed between a lysine residue of
the enzyme and ketose substrates.
Length = 292
Score = 60.1 bits (146), Expect = 6e-11
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 28/170 (16%)
Query: 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELL-KQRGIIPGIKVDKGV---- 55
MR + TS GD I G ILF +T+ ++ +G P + L +++ I+P +KVDKG+
Sbjct: 51 MRTRIITSPAFDGDKILGAILFEQTMDREI-EGKPTADYLWEKKQIVPFLKVDKGLAEEK 109
Query: 56 --VPLMGSEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVL 113
V LM + + +L + K+ G K R V+K N A+++ L
Sbjct: 110 NGVQLM--------KPIPNLDELLMRAKEKGVFGTKMRSVIKEA-NPKGIAAVVDQQFEL 160
Query: 114 ARYASICQANRIVPIVEPEVLPDGPHDLERAQK--VTETVLAAVYKALND 161
A+ ++ +VPI+EPEV D+ A K + A + K L+
Sbjct: 161 AK---QILSHGLVPIIEPEV------DIHSADKAKCEAILKAEILKHLDK 201
>gnl|CDD|180045 PRK05377, PRK05377, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 296
Score = 58.3 bits (142), Expect = 2e-10
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 26/143 (18%)
Query: 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELL-KQRGIIPGIKVDKGV---- 55
MR + TS GD I G ILF +T+ ++ +G P + L +++G++P +KVDKG+
Sbjct: 54 MRTRIITSPAFTGDKILGAILFEQTMDREI-EGKPTADYLWEKKGVVPFLKVDKGLAEEA 112
Query: 56 --VPLMGSEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVL 113
V LM LDDL R + G K R V + + Q I A V+
Sbjct: 113 NGVQLMKPIP-----NLDDLLDRAVEKGIFG---TKMRSV----IKEANEQGI---AAVV 157
Query: 114 AR---YASICQANRIVPIVEPEV 133
A+ A A +VPI+EPEV
Sbjct: 158 AQQFEVAKQILAAGLVPIIEPEV 180
>gnl|CDD|224071 COG1149, COG1149, MinD superfamily P-loop ATPase containing an
inserted ferredoxin domain [Energy production and
conversion].
Length = 284
Score = 27.7 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 116 YASICQANRIVPIVEPEVLPDGPHDLERAQKVTE 149
AS+ A+ + + EP P G HDL+RA ++ E
Sbjct: 180 IASLKGADLAILVTEPT--PFGLHDLKRALELVE 211
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 28.1 bits (62), Expect = 4.3
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 85 CHFAKWR----CVLKINVNTPSYQAILENANVLARYASICQANRIV 126
CH K+ C+L N+NT Y I N + YAS N I+
Sbjct: 262 CHDTKYNVCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEII 307
>gnl|CDD|233440 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate
synthase. This model represents the FolC family of
folate pathway proteins. Most examples are bifunctional,
active as both folylpolyglutamate synthetase (EC
6.3.2.17) and dihydrofolate synthetase (EC 6.3.2.12).
The two activities are similar - ATP + glutamate +
dihydropteroate or tetrahydrofolyl-[Glu](n) = ADP +
orthophosphate + dihydrofolate or
tetrahydrofolyl-[Glu](n+1). A mutation study of the FolC
gene of E. coli suggests that both activities belong to
the same active site. Because some examples are
monofunctional (and these cannot be separated
phylogenetically), the model is treated as subfamily,
not equivalog [Biosynthesis of cofactors, prosthetic
groups, and carriers, Folic acid].
Length = 398
Score = 27.6 bits (62), Expect = 4.8
Identities = 37/198 (18%), Positives = 56/198 (28%), Gaps = 28/198 (14%)
Query: 24 ETLYQKADD-GTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQGLDDLGARCAQYKK 82
L +KA + G P L G + L Q +
Sbjct: 180 NVLKKKAQEKGAP----LFVVGRDFNYSETDENYLSFSGANLFLEPLALSLLGD-HQAEN 234
Query: 83 DGCHFAKWRCVLKINVNTPSYQAI---LENANVLARYASICQANRIVPIVEPEVLPDGPH 139
A + K N S +AI L N R + I+ P +L DG H
Sbjct: 235 AALALAALEVLGKQNSILLSEEAIRKGLANTIWPGR----LE---ILSEDNPNILLDGAH 287
Query: 140 DLERAQKVTETV--------LAAVYKALNDHHVYLEGTLLKPNM----VTAGQSSPKKYS 187
+ A+ + E + ++ AL D LKP + P+
Sbjct: 288 NPHSAEALAEWFKKRFNGRPIILLFGALADKDAAAMLAPLKPVLDKEVFVTPFDYPRADD 347
Query: 188 AQEIAQATVQALQRTVPA 205
A ++A TV
Sbjct: 348 AADLAAFAETFGGETVED 365
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,444,823
Number of extensions: 965023
Number of successful extensions: 881
Number of sequences better than 10.0: 1
Number of HSP's gapped: 871
Number of HSP's successfully gapped: 21
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)