RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy354
(207 letters)
>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery,
structu genomics, PSI, protein structure initiative;
2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A
Length = 369
Score = 355 bits (913), Expect = e-124
Identities = 112/208 (53%), Positives = 140/208 (67%), Gaps = 3/208 (1%)
Query: 2 RKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGS 61
R LLF + +G ISG ILF ETL+QK + G P V LL IIPGIKVDKG+V + +
Sbjct: 66 RDLLFGTKG-LGKFISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPCT 124
Query: 62 EDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINV--NTPSYQAILENANVLARYASI 119
++E +TQGLD L RC +Y K G FAKWR VL I+ P+ +I E A LARYASI
Sbjct: 125 DEEKSTQGLDGLAERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYASI 184
Query: 120 CQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAG 179
CQ NR+VPIVEPE+L DGPH +E VT+ VL+ V+KAL ++ V LEG LLKPNMVTAG
Sbjct: 185 CQQNRLVPIVEPEILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTAG 244
Query: 180 QSSPKKYSAQEIAQATVQALQRTVPAAV 207
K + Q++ TV+ L+RTVP A+
Sbjct: 245 YECTAKTTTQDVGFLTVRTLRRTVPPAL 272
>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis,
phosphoprotein, schiff base; HET: 13P; 1.70A
{Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A*
1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A
3lge_A 3tu9_A* 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A
3dfn_A 3dfo_A 3dfp_A ...
Length = 341
Score = 351 bits (902), Expect = e-123
Identities = 147/206 (71%), Positives = 166/206 (80%)
Query: 2 RKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGS 61
R+LL T+D + I GVILFHETLYQKADDG PF +++K +G + GIKVDKGVVPL G+
Sbjct: 56 RQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGT 115
Query: 62 EDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQ 121
E TTQGL L RCAQYKKDG FAKWRCVLKI +TPS AI+ENANVLARYASICQ
Sbjct: 116 NGETTTQGLVGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQ 175
Query: 122 ANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQS 181
N IVPIVEPE+LPDG HDL+R Q VTE VLAAVYKAL+DHH+YLEGTLLKPNMVT G +
Sbjct: 176 QNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHA 235
Query: 182 SPKKYSAQEIAQATVQALQRTVPAAV 207
+KYS +EIA ATV AL+RTVP AV
Sbjct: 236 CTQKYSHEEIAMATVTALRRTVPPAV 261
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel,
fructose-1,6-bisphosphate teminal tail, lyase; 1.59A
{Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A*
2qdh_A* 1epx_A 1f2j_A
Length = 391
Score = 349 bits (897), Expect = e-122
Identities = 98/207 (47%), Positives = 125/207 (60%), Gaps = 2/207 (0%)
Query: 2 RKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLM-G 60
R L+ ++ ISGVIL ET+ QKA +G F E L RG++PGIK D G+ PL+ G
Sbjct: 89 RALMLEAEG-FEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEG 147
Query: 61 SEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASIC 120
+E E T+GLD R + Y K GC F KWR V KI T S A+ NA LARYA +
Sbjct: 148 AEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILS 207
Query: 121 QANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQ 180
Q + +VPIVEPEV+ DG HD++ Q+V+E V V AL H V EG LLKPNMV G
Sbjct: 208 QMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGA 267
Query: 181 SSPKKYSAQEIAQATVQALQRTVPAAV 207
S K + +++A TV L RT+PA +
Sbjct: 268 ESGKTAAPEQVAHYTVMTLARTMPAML 294
>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base;
2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* 3qrh_A
Length = 342
Score = 343 bits (881), Expect = e-120
Identities = 86/206 (41%), Positives = 125/206 (60%), Gaps = 3/206 (1%)
Query: 2 RKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGS 61
R++LF++ I I GVIL ET Q + G P ELLK++GI GIK+DKG++
Sbjct: 58 REILFSTKG-IERYIGGVILNQETFEQTSGSGVPLTELLKKKGIEIGIKLDKGLIDY--K 114
Query: 62 EDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASICQ 121
E E + GL+DL RC FAKWR + PS I EN ++LA+YA ICQ
Sbjct: 115 EKEKISVGLEDLDLRCKSSAFKDATFAKWRSLFYFYDGIPSEDCINENCSILAKYAIICQ 174
Query: 122 ANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQS 181
N +VPIVEPEV +G + ++R+ +VT +L+ + K LN VY+ G L+K + VT+GQ
Sbjct: 175 KNGLVPIVEPEVFLEGDYSMKRSYEVTRQILSTLMKYLNYELVYIPGVLIKASYVTSGQL 234
Query: 182 SPKKYSAQEIAQATVQALQRTVPAAV 207
S +KY+ +++A T++AL T+P +
Sbjct: 235 SNEKYTPKKVATFTLRALLSTIPCGI 260
>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics,
seattle structural GE center for infectious disease,
hydrolase; HET: 2FP; 2.35A {Bartonella henselae}
Length = 347
Score = 340 bits (875), Expect = e-119
Identities = 101/210 (48%), Positives = 131/210 (62%), Gaps = 5/210 (2%)
Query: 2 RKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGS 61
R++LFT+ + + ISGVILF ETL QKA G +L++ G +PGIKVD G PL
Sbjct: 53 REMLFTAKEAMESAISGVILFDETLRQKASTGQMLTDLIRDAGAVPGIKVDTGAKPLAAF 112
Query: 62 EDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNT-PSYQAILENANVLARYASIC 120
E T+GLD L R Y G FAKWR V+ I+ T P+ AI +NA LARYA++C
Sbjct: 113 PQETITEGLDGLRERLKDYYTLGARFAKWRAVIAIDAQTLPTRGAISQNAQALARYAALC 172
Query: 121 QANRIVPIVEPEVLPDGP---HDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVT 177
Q +VPIVEPEVL DGP H + R +VT+ VL V+K L + V EG +LKPNMV
Sbjct: 173 QEAGLVPIVEPEVLMDGPSRQHSITRCFEVTKVVLHTVFKELFEARVLFEGMILKPNMVI 232
Query: 178 AGQSSPKKYSAQEIAQATVQALQRTVPAAV 207
G+ + S +E+A+ TV L++TVPAAV
Sbjct: 233 DGKDAR-IASVEEVAEKTVHVLKQTVPAAV 261
>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, glycolysis, lyase, STRU genomics;
HET: CIT; 2.10A {Babesia bovis}
Length = 379
Score = 336 bits (864), Expect = e-117
Identities = 115/208 (55%), Positives = 145/208 (69%), Gaps = 3/208 (1%)
Query: 2 RKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGS 61
R +LFT+ +G ISG ILF ETL+Q+A +G V+LL+ GI+PGIKVDKG+V + +
Sbjct: 78 RSILFTTKG-LGKYISGCILFEETLFQQAPNGQNMVDLLRAEGILPGIKVDKGLVTIPNT 136
Query: 62 EDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINV--NTPSYQAILENANVLARYASI 119
++E +T GLD L RC +Y G FAKWR VL I+V N PS +ILE A+ LARYA+I
Sbjct: 137 DEEVSTTGLDGLAERCQKYYNAGARFAKWRAVLSIDVKKNKPSNLSILETAHTLARYAAI 196
Query: 120 CQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAG 179
CQ N +VPIVEPE+L DG H +E +VTE VLAAV+KALNDH V LEG LLKPNMVT G
Sbjct: 197 CQENGLVPIVEPEILADGDHSIEVCAEVTERVLAAVFKALNDHKVLLEGALLKPNMVTQG 256
Query: 180 QSSPKKYSAQEIAQATVQALQRTVPAAV 207
K + Q + T +AL+RTVP A+
Sbjct: 257 VDCKDKPAPQTVGFLTSRALRRTVPPAL 284
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural
genomics, PSI-2; 2.46A {Porphyromonas gingivalis}
Length = 296
Score = 273 bits (700), Expect = 3e-93
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 13/185 (7%)
Query: 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMG 60
MR + TS I GVILF T+ K + L ++R I+P +KVDKG+
Sbjct: 56 MRTRMITSPAFATGKIIGVILFERTMRGKIEGMPTADFLWEKRHIVPFLKVDKGLQDEAN 115
Query: 61 SEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASIC 120
+ +LG C + K R V+K + Q I + ++
Sbjct: 116 --GVQLMKPFPELGKLCEEAVGYHVFGTKMRSVIKQ----ANEQGIRDIVEQQFQWGKEI 169
Query: 121 QANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQ 180
++ +VPI+EPEV P + + + +LA + K E +LK + T
Sbjct: 170 LSHGLVPILEPEVDIHCPEKAKAEEILKRELLAQLDK-------MTEPVMLKITIPTVDN 222
Query: 181 SSPKK 185
+
Sbjct: 223 FYKEI 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 8e-04
Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 50/151 (33%)
Query: 16 ISGVILFHETLYQKADDGTPFVELLKQRGI-----IPG----------IKVDKGVVPLMG 60
++ V+ VE++ RG+ +P I ++ G V
Sbjct: 1773 LADVMSIESL-----------VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 61 SEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKI-NVNTPSYQAI----LENANVLAR 115
S++ L + R K+ G +++I N N + Q + L + +
Sbjct: 1822 SQEA-----LQYVVERVG--KRTG-------WLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 116 YASICQANRIVPIVEPEVLPDGPHDLERAQK 146
+ + +I I+E L LE +
Sbjct: 1868 VLNFIKLQKI-DIIE---LQKSLS-LEEVEG 1893
Score = 31.2 bits (70), Expect = 0.26
Identities = 36/216 (16%), Positives = 54/216 (25%), Gaps = 81/216 (37%)
Query: 9 DKVIGDNISGVILFH--ETLYQKADDGTPF------------VELLKQRGIIPGIKVDKG 54
K I ++ + L T F E LK +G+IP
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSA-----TQFTQPALTLMEKAAFEDLKSKGLIPADAT--- 1758
Query: 55 VVPLMG-SEDECTTQGLDDLG-----ARCAQYK--KDGCHFAKWRCVLKINVNTPSYQAI 106
G S LG A A + +R + A+
Sbjct: 1759 ---FAGHS-----------LGEYAALASLADVMSIESLVEVVFYRGMT-------MQVAV 1797
Query: 107 LENANVLARYASI-CQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVY 165
+ + Y I R+ E L +ER K T ++ V N
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYV---VERVGKRTGWLVEIV----NY---- 1846
Query: 166 LEGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQR 201
N Q Q +A ++AL
Sbjct: 1847 --------N--VENQ--------QYVAAGDLRALDT 1864
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.067
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 180 QSSPKKY---SAQEIA-QATVQ 197
Q+S K Y SA +A +AT++
Sbjct: 26 QASLKLYADDSAPALAIKATME 47
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding,
tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate
aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB:
3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Length = 332
Score = 30.2 bits (67), Expect = 0.46
Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 12/162 (7%)
Query: 3 KLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSE 62
K L ++ ++ + + ++ + L + G+ D+ L+ E
Sbjct: 36 KCLMAQYQMKEPTVAQMEELKVLVSEELTPYASSILLDPEYGLPAAQARDREAGLLLAYE 95
Query: 63 ----DECTTQGLDDL--GARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARY 116
D TT L D + K+ G K+ ++ + Q ++ + R
Sbjct: 96 KTGYDANTTSRLPDCLVDWSIKRLKEAGADAVKFLLYYDVDGDP---QVNVQKQAYIERI 152
Query: 117 ASICQANRIVPIVEPEVLPDGPHDL---ERAQKVTETVLAAV 155
S CQA I +E + + E A+ V A+
Sbjct: 153 GSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAM 194
>1msi_A Type III antifreeze protein isoform HPLC 12; multigene family,
thermal hysteresis; 1.25A {Macrozoarces americanus}
SCOP: b.85.1.1
Length = 70
Score = 26.2 bits (57), Expect = 2.7
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 167 EGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVP 204
T L M+ + +P A++I + + R VP
Sbjct: 14 INTALTLVMMRSEVVTPVGIPAEDIPRLVSMQVNRAVP 51
>1ucs_A Antifreeze peptide RD1; small beta barrel, pretzel fold, antifreeze
protein; 0.62A {Lycodichthys dearborni} SCOP: b.85.1.1
PDB: 9ame_A 1ame_A 1kde_A 1kdf_A 1gzi_A 1hg7_A 1b7i_A
2spg_A 1jab_A 1b7j_A 2msj_A 1ekl_A 4ame_A 7ame_A 3qf6_A
2ame_A 1msj_A 1b7k_A 6ame_A 9msi_A ...
Length = 64
Score = 25.8 bits (56), Expect = 2.8
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 167 EGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVP 204
T L M+ A +P A+EI + + R VP
Sbjct: 13 INTALTLIMMKAEVVTPMGIPAEEIPKLVGMQVNRAVP 50
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase
superfami oxidoreductase; 2.20A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1
Length = 232
Score = 27.1 bits (61), Expect = 3.6
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 124 RIVPIV-EPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTA 178
++VP+V +PE G V VL + L +H +Y+ G M
Sbjct: 162 QVVPVVEQPEAGWRGRTGT-----VLTAVLQD-HGTLAEHDIYIAGR---FEMAKI 208
>1ops_A Type III AFP, type III antifreeze protein; ICE crystal growth
inhibition, pretzel fold, glycoprotein; 2.00A
{Macrozoarces americanus} SCOP: b.85.1.1
Length = 64
Score = 25.4 bits (55), Expect = 4.2
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 167 EGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVP 204
T L P M+ ++P E++Q + + V
Sbjct: 12 MNTALTPAMMEGKVTNPIGIPFAEMSQLVGKQVNTPVA 49
>1c89_A RD3, antifreeze protein type III; thermal hysteresis protein, ICE
binding protein; NMR {Pachycara brachycephalum} SCOP:
b.85.1.1 b.85.1.1 PDB: 1c8a_A 3nla_A 3rdn_A
Length = 134
Score = 26.2 bits (57), Expect = 5.3
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 167 EGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVP 204
T L M+ A + SPK ++EI++ + R V
Sbjct: 83 INTALTLVMMKAEEVSPKGIPSEEISKLVGMQVNRAVY 120
Score = 25.8 bits (56), Expect = 8.0
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 167 EGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVP 204
T L M+ A +P A+EI + R VP
Sbjct: 13 INTALTLIMMKAEVVTPMGIPAEEIPNLVGMQVNRAVP 50
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 26.6 bits (59), Expect = 6.7
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 102 SYQAILENANVLARYASICQANRI--VPIVEPEVLPDGPHDL-ERAQKV 147
+A+ + + + + VP+++ + +PD P +L A V
Sbjct: 262 DPRALTLAYKLPLGSTEYPKLHYLSFVPVIDGDFIPDDPVNLYANAADV 310
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET:
GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP:
c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Length = 315
Score = 26.5 bits (58), Expect = 7.4
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 113 LARYASICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDH---HVYLEG 168
+ AS ++ IVEP+ L ++ ++ L VY++
Sbjct: 122 IDAVASGLGSSPATIIVEPDALAMADCLSPDQRQERFDLVRYAVDTLTRDPAAAVYVDA 180
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 26.6 bits (59), Expect = 7.4
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 102 SYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDL 141
Q IL N + Y + N P V+ + L D P L
Sbjct: 268 DPQEILLNEAFVVPYGTPLSVN-FGPTVDGDFLTDMPDIL 306
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 26.6 bits (59), Expect = 7.5
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 102 SYQAILENANVLARYASICQANRIVPIVEPEVLPDGPHDL 141
Q +++ + + SI + + VP+++ E P +
Sbjct: 270 KPQELIDVEWNVLPFDSIFRFS-FVPVIDGEFFPTSLESM 308
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling
protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2
PDB: 1joe_A
Length = 175
Score = 25.8 bits (57), Expect = 8.4
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 139 HDLERAQKVTETVLAAVYKAL-NDHHVYLEGTL 170
H LE A ++ + V+A N+ L
Sbjct: 134 HSLEDAHEIAKNVIARGIGVNKNEDLSLDNSLL 166
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,163,176
Number of extensions: 188820
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 22
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)