RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy354
(207 letters)
>d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase
{Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId:
9986]}
Length = 363
Score = 217 bits (553), Expect = 1e-70
Identities = 148/207 (71%), Positives = 167/207 (80%)
Query: 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMG 60
R+LL T+D + I GVILFHETLYQKADDG PF +++K +G + GIKVDKGVVPL G
Sbjct: 58 YRQLLLTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAG 117
Query: 61 SEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASIC 120
+ E TTQGLD L RCAQYKKDG FAKWRCVLKI +TPS AI+ENANVLARYASIC
Sbjct: 118 TNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASIC 177
Query: 121 QANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQ 180
Q N IVPIVEPE+LPDG HDL+R Q VTE VLAAVYKAL+DHH+YLEGTLLKPNMVT G
Sbjct: 178 QQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGH 237
Query: 181 SSPKKYSAQEIAQATVQALQRTVPAAV 207
+ +KYS +EIA ATV AL+RTVP AV
Sbjct: 238 ACTQKYSHEEIAMATVTALRRTVPPAV 264
>d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human
(Homo sapiens), liver isozyme [TaxId: 9606]}
Length = 360
Score = 207 bits (528), Expect = 6e-67
Identities = 137/207 (66%), Positives = 156/207 (75%)
Query: 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMG 60
R++LF+ D I +I GVILFHETLYQK G F +LK++GI+ GIK+D+G PL G
Sbjct: 58 FREILFSVDSSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAG 117
Query: 61 SEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASIC 120
+ E T QGLD L RCAQYKKDG F KWR VL+I PS AI ENAN LARYASIC
Sbjct: 118 TNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSSLAIQENANALARYASIC 177
Query: 121 QANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAGQ 180
Q N +VPIVEPEV+PDG HDLE Q VTE VLAAVYKALNDHHVYLEGTLLKPNMVTAG
Sbjct: 178 QQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGH 237
Query: 181 SSPKKYSAQEIAQATVQALQRTVPAAV 207
+ KKY+ +++A ATV AL RTVPAAV
Sbjct: 238 ACTKKYTPEQVAMATVTALHRTVPAAV 264
>d1a5ca_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase
{Plasmodium falciparum [TaxId: 5833]}
Length = 342
Score = 203 bits (517), Expect = 2e-65
Identities = 112/209 (53%), Positives = 140/209 (66%), Gaps = 3/209 (1%)
Query: 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMG 60
R LLF + +G ISG ILF ETL+QK + G P V LL IIPGIKVDKG+V +
Sbjct: 52 YRDLLFGTKG-LGKFISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPC 110
Query: 61 SEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINV--NTPSYQAILENANVLARYAS 118
+++E +TQGLD L RC +Y K G FAKWR VL I+ P+ +I E A LARYAS
Sbjct: 111 TDEEKSTQGLDGLAERCKEYYKAGARFAKWRTVLVIDTAKGKPTDLSIHETAWGLARYAS 170
Query: 119 ICQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTA 178
ICQ NR+VPIVEPE+L DGPH +E VT+ VL+ V+KAL ++ V LEG LLKPNMVTA
Sbjct: 171 ICQQNRLVPIVEPEILADGPHSIEVCAVVTQKVLSCVFKALQENGVLLEGALLKPNMVTA 230
Query: 179 GQSSPKKYSAQEIAQATVQALQRTVPAAV 207
G K + Q++ TV+ L+RTVP A+
Sbjct: 231 GYECTAKTTTQDVGFLTVRTLRRTVPPAL 259
>d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 357
Score = 194 bits (495), Expect = 5e-62
Identities = 98/208 (47%), Positives = 125/208 (60%), Gaps = 2/208 (0%)
Query: 1 MRKLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLM- 59
R L+ ++ ISGVIL ET+ QKA +G F E L RG++PGIK D G+ PL+
Sbjct: 68 YRALMLEAEG-FEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLE 126
Query: 60 GSEDECTTQGLDDLGARCAQYKKDGCHFAKWRCVLKINVNTPSYQAILENANVLARYASI 119
G+E E T+GLD R + Y K GC F KWR V KI T S A+ NA LARYA +
Sbjct: 127 GAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAIL 186
Query: 120 CQANRIVPIVEPEVLPDGPHDLERAQKVTETVLAAVYKALNDHHVYLEGTLLKPNMVTAG 179
Q + +VPIVEPEV+ DG HD++ Q+V+E V V AL H V EG LLKPNMV G
Sbjct: 187 SQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPG 246
Query: 180 QSSPKKYSAQEIAQATVQALQRTVPAAV 207
S K + +++A TV L RT+PA +
Sbjct: 247 AESGKTAAPEQVAHYTVMTLARTMPAML 274
>d1ucsa_ b.85.1.1 (A:) Type III antifreeze protein, AFP III
{Antarctic eel pout (Lycodichthys dearborni), RD1
isoform [TaxId: 8201]}
Length = 64
Score = 25.5 bits (56), Expect = 1.1
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 167 EGTLLKPNMVTAGQSSPKKYSAQEIAQATVQALQRTVP 204
T L M+ A +P A+EI + + R VP
Sbjct: 13 INTALTLIMMKAEVVTPMGIPAEEIPKLVGMQVNRAVP 50
>d1wija_ a.140.5.1 (A:) Ethylene insensitive 3 (EIN3)-like protein
3, EIL3 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 127
Score = 26.0 bits (57), Expect = 2.3
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 138 PHDLERAQKVTETVLAAVYK 157
PHDL++ KV VL AV
Sbjct: 66 PHDLKKMWKV--GVLTAVIN 83
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
tuberculosis, GroEL2 [TaxId: 1773]}
Length = 184
Score = 24.8 bits (54), Expect = 6.9
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 99 NTPSYQAILENANVLARYASICQANRIVPIVEPEVLPDGP 138
+ +A+LE+ +L + + ++P++E + P
Sbjct: 16 DPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKP 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 751,880
Number of extensions: 33717
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 8
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)