Query psy3540
Match_columns 202
No_of_seqs 231 out of 1606
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 19:17:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0738|consensus 100.0 5.8E-50 1.3E-54 328.4 20.1 201 2-202 291-491 (491)
2 KOG0730|consensus 100.0 1.2E-43 2.7E-48 306.9 18.0 177 2-198 514-692 (693)
3 KOG0733|consensus 100.0 2.3E-42 4.9E-47 296.5 18.9 193 2-200 591-789 (802)
4 COG1222 RPT1 ATP-dependent 26S 100.0 4E-41 8.7E-46 274.3 17.0 160 2-182 231-394 (406)
5 KOG0733|consensus 100.0 1.2E-40 2.6E-45 285.9 19.1 197 2-199 269-523 (802)
6 KOG0736|consensus 100.0 1.4E-40 3.1E-45 291.2 19.1 197 2-200 751-952 (953)
7 KOG0739|consensus 100.0 4.5E-41 9.8E-46 268.5 12.8 196 2-201 212-437 (439)
8 TIGR01243 CDC48 AAA family ATP 100.0 1E-36 2.2E-41 277.8 22.0 197 2-202 533-732 (733)
9 KOG0734|consensus 100.0 2.2E-36 4.8E-41 256.5 13.1 157 2-180 383-541 (752)
10 KOG0737|consensus 100.0 2.2E-35 4.8E-40 241.6 17.3 197 2-201 173-382 (386)
11 KOG0740|consensus 100.0 9.9E-36 2.1E-40 250.6 13.1 194 2-202 232-426 (428)
12 CHL00195 ycf46 Ycf46; Provisio 100.0 2.8E-33 6.1E-38 242.9 19.3 174 2-199 305-484 (489)
13 COG0464 SpoVK ATPases of the A 100.0 5.7E-33 1.2E-37 243.6 17.2 167 2-195 322-492 (494)
14 COG1223 Predicted ATPase (AAA+ 100.0 4.3E-33 9.3E-38 219.2 14.1 162 2-184 197-359 (368)
15 KOG0728|consensus 100.0 5.8E-33 1.3E-37 217.8 14.2 168 2-190 227-398 (404)
16 KOG0735|consensus 100.0 1.7E-32 3.6E-37 239.1 17.0 183 2-197 747-933 (952)
17 KOG0652|consensus 100.0 7.6E-33 1.6E-37 218.2 12.8 160 2-182 251-414 (424)
18 PTZ00454 26S protease regulato 100.0 4.6E-31 1E-35 224.5 17.4 161 2-183 225-389 (398)
19 KOG0726|consensus 100.0 9.3E-32 2E-36 214.6 11.2 159 2-181 265-427 (440)
20 COG0465 HflB ATP-dependent Zn 100.0 1.6E-31 3.5E-36 233.3 13.6 159 2-181 229-391 (596)
21 KOG0730|consensus 100.0 6.5E-31 1.4E-35 228.1 15.9 170 2-199 264-446 (693)
22 KOG0731|consensus 100.0 9.3E-31 2E-35 232.4 15.6 158 3-181 391-554 (774)
23 KOG0727|consensus 100.0 4.2E-30 9.1E-35 201.9 13.6 160 2-182 235-398 (408)
24 PRK03992 proteasome-activating 100.0 1E-29 2.2E-34 216.7 17.1 165 2-187 211-379 (389)
25 PRK10733 hflB ATP-dependent me 100.0 3E-29 6.5E-34 225.3 17.6 161 2-183 231-395 (644)
26 TIGR01241 FtsH_fam ATP-depende 100.0 4.8E-29 1E-33 218.7 18.1 160 2-182 134-297 (495)
27 PTZ00361 26 proteosome regulat 100.0 7.3E-29 1.6E-33 212.6 15.2 160 2-182 263-426 (438)
28 KOG0741|consensus 100.0 1.9E-29 4.1E-34 214.3 9.4 186 2-193 303-505 (744)
29 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.2E-28 2.5E-33 233.0 15.2 154 4-182 1721-1879(2281)
30 CHL00176 ftsH cell division pr 100.0 1.2E-27 2.6E-32 213.6 17.8 158 2-180 262-423 (638)
31 KOG0729|consensus 100.0 3.2E-28 7E-33 192.6 11.6 159 2-181 257-419 (435)
32 TIGR01242 26Sp45 26S proteasom 99.9 1.4E-26 3E-31 196.1 17.0 158 2-180 202-363 (364)
33 TIGR03689 pup_AAA proteasome A 99.9 1.5E-25 3.3E-30 194.8 17.1 162 2-180 272-478 (512)
34 KOG0732|consensus 99.9 4.7E-26 1E-30 207.5 12.6 179 2-186 350-531 (1080)
35 TIGR01243 CDC48 AAA family ATP 99.9 1E-24 2.2E-29 199.3 19.2 178 2-184 258-439 (733)
36 KOG0651|consensus 99.9 3.5E-26 7.6E-31 183.9 7.5 159 2-181 212-374 (388)
37 PLN00020 ribulose bisphosphate 99.9 7.6E-23 1.6E-27 169.7 16.4 142 2-147 194-355 (413)
38 KOG0736|consensus 99.8 2.1E-19 4.5E-24 158.9 15.2 189 3-198 478-683 (953)
39 KOG0735|consensus 99.8 7.5E-19 1.6E-23 154.3 13.9 167 2-183 481-651 (952)
40 KOG0742|consensus 99.7 4.1E-17 8.9E-22 136.1 13.6 131 3-139 430-588 (630)
41 COG0464 SpoVK ATPases of the A 99.7 5.6E-16 1.2E-20 136.3 17.8 176 2-194 63-249 (494)
42 PF00004 AAA: ATPase family as 99.5 8.1E-14 1.8E-18 100.8 9.8 87 2-92 44-132 (132)
43 KOG0744|consensus 99.5 2.5E-13 5.4E-18 110.7 8.7 156 2-180 232-414 (423)
44 TIGR02639 ClpA ATP-dependent C 99.3 4E-11 8.6E-16 110.1 13.7 173 2-199 261-452 (731)
45 CHL00181 cbbX CbbX; Provisiona 99.3 1.9E-10 4.2E-15 94.5 15.9 135 4-150 114-261 (287)
46 PRK11034 clpA ATP-dependent Cl 99.3 6.7E-11 1.4E-15 108.3 14.2 155 2-181 265-434 (758)
47 TIGR02880 cbbX_cfxQ probable R 99.2 6.3E-10 1.4E-14 91.4 15.8 135 3-149 112-259 (284)
48 KOG0743|consensus 99.2 6.5E-11 1.4E-15 100.5 9.3 119 15-136 286-413 (457)
49 TIGR02881 spore_V_K stage V sp 99.2 1E-09 2.3E-14 89.0 14.4 135 3-150 96-245 (261)
50 PRK00080 ruvB Holliday junctio 99.0 1.6E-08 3.5E-13 84.7 15.5 155 14-198 101-271 (328)
51 TIGR00763 lon ATP-dependent pr 99.0 4.1E-09 8.9E-14 97.5 12.5 136 3-148 403-559 (775)
52 TIGR03345 VI_ClpV1 type VI sec 99.0 7E-09 1.5E-13 96.6 13.0 115 2-129 266-391 (852)
53 PF09336 Vps4_C: Vps4 C termin 99.0 4.6E-10 1E-14 70.9 3.0 36 165-200 27-62 (62)
54 TIGR02928 orc1/cdc6 family rep 98.9 2.4E-08 5.1E-13 84.6 13.1 129 5-146 118-257 (365)
55 TIGR00635 ruvB Holliday juncti 98.9 2.7E-08 5.8E-13 82.3 12.3 117 14-143 80-209 (305)
56 PRK10865 protein disaggregatio 98.9 7.1E-09 1.5E-13 96.7 9.1 114 2-128 257-381 (857)
57 PRK00411 cdc6 cell division co 98.9 7.4E-08 1.6E-12 82.4 13.7 120 14-146 137-265 (394)
58 TIGR00362 DnaA chromosomal rep 98.9 6.8E-08 1.5E-12 83.2 13.5 115 15-144 199-319 (405)
59 PRK00149 dnaA chromosomal repl 98.8 9.5E-08 2.1E-12 83.4 13.1 133 15-180 211-349 (450)
60 TIGR03346 chaperone_ClpB ATP-d 98.8 2.1E-08 4.6E-13 93.6 9.3 115 2-129 252-377 (852)
61 TIGR02902 spore_lonB ATP-depen 98.8 7.8E-08 1.7E-12 85.5 11.8 97 63-179 234-331 (531)
62 PRK14088 dnaA chromosomal repl 98.6 7.5E-07 1.6E-11 77.5 12.9 114 14-143 193-313 (440)
63 CHL00095 clpC Clp protease ATP 98.6 9.9E-08 2.1E-12 88.9 7.7 116 2-130 258-383 (821)
64 PRK06893 DNA replication initi 98.6 4.4E-07 9.6E-12 72.3 10.1 111 15-139 91-207 (229)
65 PRK12422 chromosomal replicati 98.6 2.5E-06 5.4E-11 74.3 14.3 155 14-200 201-366 (445)
66 PRK14086 dnaA chromosomal repl 98.5 3E-06 6.5E-11 75.8 14.1 115 14-144 376-497 (617)
67 PTZ00112 origin recognition co 98.5 1.2E-06 2.7E-11 80.6 11.7 118 3-136 855-979 (1164)
68 PRK07940 DNA polymerase III su 98.5 2.2E-06 4.8E-11 73.5 11.4 111 2-136 100-215 (394)
69 PRK10787 DNA-binding ATP-depen 98.4 3E-06 6.4E-11 78.5 12.2 153 5-178 407-580 (784)
70 PRK14087 dnaA chromosomal repl 98.4 4.8E-06 1E-10 72.7 12.4 136 14-180 205-348 (450)
71 PRK14961 DNA polymerase III su 98.4 7E-06 1.5E-10 69.8 12.9 118 3-140 103-225 (363)
72 TIGR02397 dnaX_nterm DNA polym 98.4 4.2E-06 9.1E-11 70.5 11.5 119 3-141 101-224 (355)
73 PRK08727 hypothetical protein; 98.4 5.4E-06 1.2E-10 66.2 11.5 132 14-179 92-230 (233)
74 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.9E-06 6.3E-11 67.0 9.9 116 15-145 90-211 (226)
75 PRK07003 DNA polymerase III su 98.4 2.6E-05 5.5E-10 71.3 16.3 118 3-140 103-225 (830)
76 PRK06645 DNA polymerase III su 98.3 9.4E-06 2E-10 71.7 12.8 120 3-142 112-236 (507)
77 PRK14962 DNA polymerase III su 98.3 7.8E-06 1.7E-10 71.7 12.2 116 3-138 101-221 (472)
78 PRK08903 DnaA regulatory inact 98.3 1.1E-05 2.3E-10 64.0 11.6 130 15-178 90-224 (227)
79 PRK08084 DNA replication initi 98.3 5.5E-06 1.2E-10 66.3 9.8 110 17-140 99-214 (235)
80 PRK13342 recombination factor 98.3 2E-05 4.2E-10 68.2 13.2 115 3-140 76-201 (413)
81 PRK05563 DNA polymerase III su 98.3 1.8E-05 3.9E-10 70.9 13.3 119 3-141 103-226 (559)
82 PRK12323 DNA polymerase III su 98.3 2.3E-05 5E-10 70.6 13.7 118 3-140 108-230 (700)
83 PRK14956 DNA polymerase III su 98.2 2.4E-05 5.1E-10 68.4 12.2 117 3-139 105-226 (484)
84 PRK04132 replication factor C 98.2 0.00014 3E-09 67.7 17.6 105 3-126 612-723 (846)
85 PRK09087 hypothetical protein; 98.2 1.8E-05 3.9E-10 63.0 10.2 128 17-180 89-222 (226)
86 PRK12402 replication factor C 98.2 1.5E-05 3.3E-10 66.6 10.2 101 16-139 126-227 (337)
87 PRK05642 DNA replication initi 98.2 2.5E-05 5.3E-10 62.5 10.4 113 17-144 99-217 (234)
88 PRK14951 DNA polymerase III su 98.2 3.9E-05 8.5E-10 69.2 12.7 118 3-141 108-231 (618)
89 TIGR03015 pepcterm_ATPase puta 98.1 2.4E-05 5.2E-10 63.4 10.3 138 11-181 119-267 (269)
90 PRK14958 DNA polymerase III su 98.1 2.9E-05 6.2E-10 68.8 11.3 117 3-140 103-225 (509)
91 PRK07994 DNA polymerase III su 98.1 0.00021 4.6E-09 64.8 16.9 105 16-140 120-225 (647)
92 TIGR00678 holB DNA polymerase 98.1 2.4E-05 5.1E-10 60.3 9.2 100 3-126 80-183 (188)
93 PRK14949 DNA polymerase III su 98.1 0.00022 4.8E-09 66.4 16.6 117 4-140 104-225 (944)
94 PRK08691 DNA polymerase III su 98.1 4.3E-05 9.3E-10 69.4 11.7 119 3-141 103-226 (709)
95 PRK14960 DNA polymerase III su 98.1 0.00022 4.8E-09 64.5 15.9 118 3-140 102-224 (702)
96 PRK06620 hypothetical protein; 98.1 4.7E-05 1E-09 60.1 10.4 103 16-139 86-193 (214)
97 PRK08451 DNA polymerase III su 98.1 6.9E-05 1.5E-09 66.5 12.3 120 3-143 101-226 (535)
98 PHA02544 44 clamp loader, smal 98.1 8.2E-05 1.8E-09 61.8 11.9 75 15-107 100-174 (316)
99 PRK14964 DNA polymerase III su 98.0 7.2E-05 1.6E-09 65.8 11.9 120 3-142 100-224 (491)
100 PRK04195 replication factor C 98.0 0.00011 2.5E-09 64.7 12.7 106 15-141 98-205 (482)
101 PRK07133 DNA polymerase III su 98.0 0.0005 1.1E-08 63.0 16.9 118 3-140 102-224 (725)
102 PRK14970 DNA polymerase III su 98.0 0.00015 3.2E-09 61.7 12.6 118 3-140 92-214 (367)
103 PRK07764 DNA polymerase III su 98.0 0.0001 2.2E-09 68.7 12.4 106 15-140 120-226 (824)
104 PRK14965 DNA polymerase III su 98.0 0.00036 7.8E-09 62.9 15.1 117 3-140 103-225 (576)
105 PRK00440 rfc replication facto 98.0 0.0001 2.2E-09 61.1 10.7 104 16-139 103-207 (319)
106 PLN03025 replication factor C 97.9 0.00047 1E-08 57.6 14.4 103 15-137 99-202 (319)
107 COG0593 DnaA ATPase involved i 97.9 0.0004 8.6E-09 59.6 13.7 117 15-146 175-297 (408)
108 PRK13341 recombination factor 97.9 0.00033 7.2E-09 64.5 13.9 116 3-140 92-222 (725)
109 PRK14953 DNA polymerase III su 97.9 0.00026 5.6E-09 62.5 12.7 117 4-140 104-225 (486)
110 PRK14969 DNA polymerase III su 97.9 0.00091 2E-08 59.7 15.9 118 3-141 103-226 (527)
111 PRK09111 DNA polymerase III su 97.9 0.0003 6.6E-09 63.5 13.0 118 3-140 116-238 (598)
112 PRK05342 clpX ATP-dependent pr 97.9 0.00036 7.8E-09 60.3 12.8 136 13-148 171-383 (412)
113 PRK05896 DNA polymerase III su 97.9 0.00062 1.3E-08 61.2 14.6 116 3-139 103-224 (605)
114 PF00308 Bac_DnaA: Bacterial d 97.9 0.00017 3.6E-09 57.1 9.8 113 14-141 96-214 (219)
115 COG2256 MGS1 ATPase related to 97.8 0.00033 7.3E-09 59.4 11.4 112 1-137 86-211 (436)
116 PRK14952 DNA polymerase III su 97.8 0.00032 6.9E-09 63.1 12.0 104 17-140 120-224 (584)
117 COG1474 CDC6 Cdc6-related prot 97.8 0.00048 1E-08 58.7 12.5 171 14-200 122-312 (366)
118 CHL00195 ycf46 Ycf46; Provisio 97.8 0.0014 3E-08 57.9 15.7 109 15-140 81-190 (489)
119 PRK14963 DNA polymerase III su 97.8 0.00054 1.2E-08 60.7 13.1 116 4-139 101-221 (504)
120 PRK14959 DNA polymerase III su 97.8 0.0011 2.3E-08 59.9 15.0 103 15-137 119-222 (624)
121 TIGR02903 spore_lon_C ATP-depe 97.8 0.00056 1.2E-08 62.1 13.2 106 64-181 324-431 (615)
122 PRK09112 DNA polymerase III su 97.8 0.00029 6.2E-09 59.7 10.4 103 15-138 141-243 (351)
123 TIGR02030 BchI-ChlI magnesium 97.8 0.00033 7.1E-09 59.0 10.7 79 16-106 132-219 (337)
124 PRK06647 DNA polymerase III su 97.8 0.0024 5.3E-08 57.4 16.7 106 15-140 119-225 (563)
125 PRK06305 DNA polymerase III su 97.7 0.0033 7.3E-08 55.0 16.4 106 14-139 120-226 (451)
126 KOG2004|consensus 97.7 0.00021 4.5E-09 64.6 8.7 133 5-147 496-653 (906)
127 PRK14948 DNA polymerase III su 97.7 0.0046 1E-07 56.2 17.2 117 2-138 104-225 (620)
128 PRK11034 clpA ATP-dependent Cl 97.7 0.0011 2.3E-08 61.6 13.1 125 12-148 554-720 (758)
129 PRK14957 DNA polymerase III su 97.6 0.001 2.2E-08 59.5 12.4 117 4-140 104-225 (546)
130 TIGR00382 clpX endopeptidase C 97.6 0.00072 1.6E-08 58.4 10.7 136 13-148 179-389 (413)
131 PRK13407 bchI magnesium chelat 97.6 0.0014 3.1E-08 55.1 11.4 78 17-106 130-216 (334)
132 smart00350 MCM minichromosome 97.5 0.0011 2.3E-08 59.0 11.2 80 16-107 301-401 (509)
133 TIGR02639 ClpA ATP-dependent C 97.5 0.0016 3.6E-08 60.3 12.8 129 8-148 546-716 (731)
134 COG2812 DnaX DNA polymerase II 97.5 0.0062 1.3E-07 53.9 15.1 119 3-142 103-227 (515)
135 TIGR02640 gas_vesic_GvpN gas v 97.5 0.0012 2.6E-08 53.7 9.9 79 15-106 105-198 (262)
136 KOG0741|consensus 97.5 0.00087 1.9E-08 58.9 9.3 96 3-103 586-683 (744)
137 PF05673 DUF815: Protein of un 97.5 0.0046 9.9E-08 49.6 12.8 98 2-112 92-213 (249)
138 TIGR01650 PD_CobS cobaltochela 97.4 0.0012 2.7E-08 55.1 9.7 83 14-108 133-235 (327)
139 COG0542 clpA ATP-binding subun 97.4 0.00039 8.5E-09 63.9 7.2 97 2-110 249-350 (786)
140 COG2255 RuvB Holliday junction 97.4 0.0098 2.1E-07 48.7 14.4 117 16-145 104-233 (332)
141 PRK11331 5-methylcytosine-spec 97.4 0.00056 1.2E-08 59.4 7.9 75 6-92 261-357 (459)
142 PRK05707 DNA polymerase III su 97.4 0.0012 2.6E-08 55.5 9.3 103 3-127 90-196 (328)
143 CHL00081 chlI Mg-protoporyphyr 97.4 0.0033 7.1E-08 53.2 11.7 79 16-106 145-232 (350)
144 PRK14950 DNA polymerase III su 97.4 0.0021 4.5E-08 58.2 11.1 104 16-139 121-225 (585)
145 KOG2028|consensus 97.4 0.0026 5.6E-08 53.8 10.7 145 2-181 204-369 (554)
146 PF05496 RuvB_N: Holliday junc 97.4 0.0012 2.6E-08 52.3 8.3 111 15-138 101-224 (233)
147 PRK14971 DNA polymerase III su 97.3 0.018 3.9E-07 52.4 16.5 117 3-140 105-227 (614)
148 TIGR00390 hslU ATP-dependent p 97.3 0.0013 2.9E-08 56.6 8.7 88 15-102 247-342 (441)
149 KOG1514|consensus 97.3 0.0039 8.5E-08 56.4 11.8 166 3-195 495-670 (767)
150 PF05621 TniB: Bacterial TniB 97.3 0.0028 6E-08 52.3 10.1 130 6-148 136-274 (302)
151 PRK07471 DNA polymerase III su 97.3 0.017 3.6E-07 49.3 14.9 94 13-128 139-232 (365)
152 TIGR02031 BchD-ChlD magnesium 97.3 0.0042 9E-08 56.2 11.8 78 17-106 86-174 (589)
153 PRK14955 DNA polymerase III su 97.3 0.0019 4.2E-08 55.6 9.2 105 17-141 129-234 (397)
154 PRK06964 DNA polymerase III su 97.3 0.001 2.2E-08 56.1 7.2 70 17-105 134-203 (342)
155 PRK05201 hslU ATP-dependent pr 97.2 0.00034 7.3E-09 60.3 4.0 88 15-102 249-344 (443)
156 cd00009 AAA The AAA+ (ATPases 97.2 0.0019 4.1E-08 46.2 7.5 71 9-91 78-150 (151)
157 COG0466 Lon ATP-dependent Lon 97.2 0.0015 3.3E-08 59.2 8.2 91 6-106 409-508 (782)
158 KOG0989|consensus 97.2 0.019 4.2E-07 47.4 13.7 96 17-135 131-227 (346)
159 PRK14954 DNA polymerase III su 97.2 0.033 7.1E-07 50.7 16.7 104 17-140 129-233 (620)
160 COG1224 TIP49 DNA helicase TIP 97.2 0.014 3.1E-07 49.2 13.1 146 15-199 291-449 (450)
161 COG0714 MoxR-like ATPases [Gen 97.2 0.0034 7.4E-08 52.6 9.5 79 17-107 114-204 (329)
162 PF01637 Arch_ATPase: Archaeal 97.1 0.002 4.3E-08 50.4 7.3 114 3-128 105-228 (234)
163 TIGR00764 lon_rel lon-related 97.1 0.004 8.7E-08 56.5 9.9 103 63-182 268-393 (608)
164 COG1220 HslU ATP-dependent pro 97.1 0.0014 3E-08 54.8 5.8 89 15-103 250-346 (444)
165 TIGR03346 chaperone_ClpB ATP-d 97.0 0.014 3E-07 55.2 12.7 125 12-148 664-830 (852)
166 PRK08769 DNA polymerase III su 97.0 0.011 2.4E-07 49.5 10.5 105 3-131 97-205 (319)
167 smart00382 AAA ATPases associa 96.9 0.0015 3.3E-08 46.2 4.6 81 3-93 66-147 (148)
168 PRK10865 protein disaggregatio 96.9 0.022 4.7E-07 53.9 12.6 123 14-148 668-833 (857)
169 TIGR02442 Cob-chelat-sub cobal 96.8 0.018 4E-07 52.6 11.8 78 17-106 128-214 (633)
170 TIGR03345 VI_ClpV1 type VI sec 96.8 0.023 5.1E-07 53.6 12.6 127 9-148 662-835 (852)
171 KOG2227|consensus 96.7 0.02 4.3E-07 49.8 10.4 113 15-143 256-379 (529)
172 CHL00095 clpC Clp protease ATP 96.7 0.031 6.6E-07 52.7 12.6 130 7-148 603-786 (821)
173 PRK07993 DNA polymerase III su 96.6 0.012 2.6E-07 49.6 8.3 89 16-127 109-197 (334)
174 PRK06871 DNA polymerase III su 96.4 0.027 5.7E-07 47.3 9.0 84 3-105 91-178 (325)
175 PF13177 DNA_pol3_delta2: DNA 96.4 0.013 2.8E-07 44.1 6.6 70 3-91 86-159 (162)
176 PRK05564 DNA polymerase III su 96.4 0.025 5.4E-07 47.1 8.8 103 3-127 77-183 (313)
177 PRK06090 DNA polymerase III su 96.3 0.025 5.4E-07 47.3 8.4 69 17-104 110-178 (319)
178 PF07693 KAP_NTPase: KAP famil 96.3 0.034 7.4E-07 46.1 9.4 79 13-108 170-265 (325)
179 PHA02244 ATPase-like protein 96.3 0.038 8.2E-07 47.1 9.1 69 14-95 179-263 (383)
180 PRK07399 DNA polymerase III su 96.2 0.033 7.2E-07 46.5 8.7 112 3-137 108-223 (314)
181 PF07728 AAA_5: AAA domain (dy 96.2 0.0066 1.4E-07 44.1 4.0 58 15-84 65-139 (139)
182 PRK08058 DNA polymerase III su 96.2 0.024 5.2E-07 47.6 7.9 70 16-104 111-180 (329)
183 KOG2680|consensus 96.2 0.19 4E-06 41.8 12.5 92 73-182 339-431 (454)
184 PRK09862 putative ATP-dependen 96.0 0.16 3.4E-06 45.3 12.2 68 17-96 296-391 (506)
185 PRK07276 DNA polymerase III su 96.0 0.12 2.6E-06 42.7 10.7 108 3-137 88-199 (290)
186 PRK13406 bchD magnesium chelat 95.5 0.3 6.5E-06 44.3 12.3 134 17-180 95-250 (584)
187 PRK06581 DNA polymerase III su 95.3 0.093 2E-06 42.2 7.3 76 16-110 90-165 (263)
188 PRK13531 regulatory ATPase Rav 95.3 0.57 1.2E-05 41.5 12.7 77 17-105 109-193 (498)
189 COG2607 Predicted ATPase (AAA+ 95.2 0.99 2.1E-05 36.4 12.7 96 4-112 127-245 (287)
190 COG3267 ExeA Type II secretory 95.2 0.28 6E-06 39.7 9.7 119 14-146 130-256 (269)
191 COG1239 ChlI Mg-chelatase subu 95.2 0.2 4.3E-06 43.2 9.3 83 11-108 141-234 (423)
192 PF05707 Zot: Zonular occluden 95.1 0.043 9.4E-07 42.4 5.0 68 15-93 79-146 (193)
193 COG0470 HolB ATPase involved i 95.1 0.06 1.3E-06 44.5 6.0 70 15-103 109-178 (325)
194 PRK13765 ATP-dependent proteas 95.0 0.4 8.6E-06 44.0 11.4 112 63-192 277-411 (637)
195 KOG2228|consensus 94.9 0.08 1.7E-06 44.5 6.2 78 15-106 137-219 (408)
196 COG1067 LonB Predicted ATP-dep 94.9 0.46 1E-05 43.5 11.6 103 64-183 277-402 (647)
197 PF07724 AAA_2: AAA domain (Cd 94.9 0.047 1E-06 41.5 4.5 58 17-75 70-132 (171)
198 PRK08699 DNA polymerase III su 94.9 0.13 2.7E-06 43.3 7.5 83 3-104 97-183 (325)
199 COG0542 clpA ATP-binding subun 94.9 0.58 1.3E-05 43.7 12.1 125 12-148 590-759 (786)
200 PRK08485 DNA polymerase III su 94.7 0.26 5.6E-06 38.4 8.1 84 3-104 41-137 (206)
201 TIGR00368 Mg chelatase-related 94.7 0.44 9.4E-06 42.5 10.6 69 16-96 296-394 (499)
202 PF05729 NACHT: NACHT domain 94.5 0.25 5.3E-06 36.3 7.5 87 10-108 76-165 (166)
203 COG1221 PspF Transcriptional r 94.5 0.32 7E-06 41.9 9.0 114 17-144 175-310 (403)
204 KOG1942|consensus 94.4 0.46 9.9E-06 39.5 9.1 96 13-128 294-403 (456)
205 PTZ00111 DNA replication licen 94.2 0.98 2.1E-05 42.9 12.2 73 17-101 559-652 (915)
206 PF06068 TIP49: TIP49 C-termin 93.8 0.31 6.7E-06 41.6 7.5 76 15-110 278-365 (398)
207 TIGR01128 holA DNA polymerase 93.8 2.5 5.3E-05 34.6 12.8 104 16-138 47-156 (302)
208 PF12846 AAA_10: AAA-like doma 93.7 0.25 5.4E-06 40.0 6.7 72 13-99 218-294 (304)
209 PRK07132 DNA polymerase III su 93.7 0.27 5.8E-06 40.9 6.8 71 15-104 90-160 (299)
210 KOG2035|consensus 93.5 0.35 7.5E-06 39.8 6.9 91 17-126 129-220 (351)
211 TIGR02974 phageshock_pspF psp 92.9 0.68 1.5E-05 38.9 8.2 117 15-143 93-233 (329)
212 PRK05917 DNA polymerase III su 92.6 0.59 1.3E-05 38.6 7.2 57 17-92 97-153 (290)
213 PF14516 AAA_35: AAA-like doma 92.0 3.5 7.5E-05 34.7 11.4 100 14-128 126-233 (331)
214 TIGR01818 ntrC nitrogen regula 92.0 1.3 2.9E-05 38.6 9.2 117 15-143 228-367 (463)
215 PRK14700 recombination factor 91.7 1.2 2.6E-05 36.9 8.0 71 62-137 7-86 (300)
216 PRK05818 DNA polymerase III su 91.6 0.83 1.8E-05 37.1 6.8 59 16-93 89-147 (261)
217 TIGR00602 rad24 checkpoint pro 91.1 3.3 7.2E-05 38.1 11.0 63 76-143 256-328 (637)
218 PRK11608 pspF phage shock prot 90.6 2.8 6E-05 35.2 9.4 116 15-142 100-239 (326)
219 KOG1969|consensus 90.5 3 6.6E-05 38.7 9.9 76 65-145 440-517 (877)
220 PRK11361 acetoacetate metaboli 90.0 2.3 5.1E-05 37.0 8.8 114 16-142 238-375 (457)
221 PF00493 MCM: MCM2/3/5 family 89.8 0.55 1.2E-05 39.5 4.5 82 15-108 121-223 (331)
222 PF00931 NB-ARC: NB-ARC domain 89.6 1.9 4.1E-05 34.9 7.5 98 14-134 100-201 (287)
223 TIGR02915 PEP_resp_reg putativ 89.4 2.4 5.2E-05 36.8 8.4 116 15-143 233-372 (445)
224 PF07726 AAA_3: ATPase family 89.4 0.51 1.1E-05 34.2 3.5 56 17-84 64-129 (131)
225 KOG1968|consensus 89.0 1.8 3.9E-05 41.1 7.6 104 18-142 431-535 (871)
226 PRK10365 transcriptional regul 88.1 2.4 5.2E-05 36.7 7.5 114 15-142 233-371 (441)
227 TIGR01817 nifA Nif-specific re 88.0 3.6 7.8E-05 36.9 8.7 117 15-143 290-428 (534)
228 PRK10820 DNA-binding transcrip 86.7 5.4 0.00012 35.7 9.1 114 16-142 299-436 (520)
229 KOG0990|consensus 86.4 19 0.00041 30.4 12.6 76 15-109 131-206 (360)
230 PF05872 DUF853: Bacterial pro 86.1 1.1 2.4E-05 39.3 4.1 77 4-93 239-324 (502)
231 KOG0481|consensus 85.9 4.5 9.7E-05 36.3 7.8 85 16-106 429-527 (729)
232 KOG0482|consensus 85.2 3.6 7.9E-05 36.8 6.8 160 17-181 441-639 (721)
233 PRK15115 response regulator Gl 84.7 4.6 9.9E-05 35.1 7.5 114 15-142 228-366 (444)
234 PRK10923 glnG nitrogen regulat 84.4 11 0.00024 33.0 9.8 116 16-143 233-371 (469)
235 cd01120 RecA-like_NTPases RecA 84.3 3.2 7E-05 29.9 5.6 24 7-30 77-100 (165)
236 PHA00012 I assembly protein 84.0 2.2 4.8E-05 36.0 4.9 77 15-102 81-164 (361)
237 PRK05022 anaerobic nitric oxid 83.9 11 0.00023 33.7 9.6 117 15-144 281-421 (509)
238 PRK04841 transcriptional regul 83.5 14 0.00031 35.0 10.8 98 14-130 120-221 (903)
239 PF12775 AAA_7: P-loop contain 83.3 3.6 7.9E-05 33.6 5.9 86 15-108 100-195 (272)
240 PRK15429 formate hydrogenlyase 83.0 10 0.00022 35.2 9.3 116 15-143 470-609 (686)
241 PRK05574 holA DNA polymerase I 82.7 26 0.00057 29.0 13.2 41 85-125 138-179 (340)
242 COG1219 ClpX ATP-dependent pro 82.7 2.4 5.2E-05 35.7 4.5 79 15-93 162-257 (408)
243 PF13401 AAA_22: AAA domain; P 82.2 4.7 0.0001 28.2 5.5 49 6-71 78-126 (131)
244 PF10923 DUF2791: P-loop Domai 81.8 11 0.00023 32.9 8.4 52 1-57 226-277 (416)
245 smart00763 AAA_PrkA PrkA AAA d 81.5 6.1 0.00013 33.7 6.7 79 17-108 238-329 (361)
246 PF14532 Sigma54_activ_2: Sigm 80.3 8.4 0.00018 27.7 6.4 14 15-28 69-82 (138)
247 TIGR02237 recomb_radB DNA repa 80.2 2.6 5.6E-05 32.6 3.8 26 4-29 86-111 (209)
248 COG1241 MCM2 Predicted ATPase 80.1 5.9 0.00013 36.7 6.5 82 15-108 383-485 (682)
249 PRK07452 DNA polymerase III su 78.9 36 0.00078 28.2 13.1 106 5-125 47-163 (326)
250 cd03227 ABC_Class2 ABC-type Cl 78.5 6.6 0.00014 29.1 5.5 48 14-77 98-145 (162)
251 PF01078 Mg_chelatase: Magnesi 78.5 3.1 6.8E-05 32.6 3.7 48 12-72 104-158 (206)
252 cd03287 ABC_MSH3_euk MutS3 hom 78.4 7.1 0.00015 30.9 5.8 60 2-77 99-158 (222)
253 PF13304 AAA_21: AAA domain; P 77.0 6.1 0.00013 30.3 5.2 45 17-77 259-303 (303)
254 PRK13539 cytochrome c biogenes 76.5 4.5 9.8E-05 31.3 4.2 66 7-94 137-202 (207)
255 PRK11388 DNA-binding transcrip 76.3 24 0.00053 32.4 9.5 115 15-142 416-553 (638)
256 KOG0745|consensus 76.2 6.8 0.00015 34.5 5.4 80 14-93 290-386 (564)
257 cd03286 ABC_MSH6_euk MutS6 hom 75.4 8.3 0.00018 30.4 5.5 62 2-79 98-159 (218)
258 PF00488 MutS_V: MutS domain V 75.3 9.8 0.00021 30.4 5.9 61 2-78 111-171 (235)
259 PRK10263 DNA translocase FtsK; 73.4 8.3 0.00018 38.3 5.8 75 17-104 1142-1218(1355)
260 KOG0732|consensus 73.3 3.1 6.7E-05 40.2 2.9 88 3-108 641-728 (1080)
261 COG3604 FhlA Transcriptional r 72.6 20 0.00044 32.0 7.5 117 17-143 319-456 (550)
262 PF03969 AFG1_ATPase: AFG1-lik 72.6 5.1 0.00011 34.3 3.8 78 16-121 128-208 (362)
263 KOG1051|consensus 72.3 7.3 0.00016 37.2 5.1 93 3-108 267-365 (898)
264 COG0497 RecN ATPase involved i 72.0 15 0.00033 33.2 6.7 43 14-74 453-495 (557)
265 COG3899 Predicted ATPase [Gene 70.8 45 0.00097 32.0 10.0 116 10-140 149-265 (849)
266 cd01121 Sms Sms (bacterial rad 70.7 14 0.00031 31.7 6.2 50 3-52 146-197 (372)
267 PF13481 AAA_25: AAA domain; P 70.7 11 0.00023 28.5 5.0 27 4-30 129-156 (193)
268 PRK08116 hypothetical protein; 70.7 11 0.00023 30.8 5.2 72 15-103 178-257 (268)
269 cd03283 ABC_MutS-like MutS-lik 70.3 11 0.00023 29.3 4.9 61 2-77 92-152 (199)
270 KOG2383|consensus 69.7 6.7 0.00015 34.0 3.9 110 62-181 223-355 (467)
271 KOG0478|consensus 68.7 43 0.00094 31.3 8.9 79 17-106 528-626 (804)
272 PRK09361 radB DNA repair and r 68.3 5.2 0.00011 31.3 2.9 82 14-99 106-197 (225)
273 KOG1051|consensus 68.2 13 0.00029 35.5 5.8 55 6-72 651-710 (898)
274 PLN03210 Resistant to P. syrin 67.8 90 0.0019 31.0 11.7 90 14-128 295-389 (1153)
275 PF04465 DUF499: Protein of un 67.3 27 0.00058 34.2 7.7 23 3-29 91-113 (1035)
276 PRK15424 propionate catabolism 66.0 44 0.00096 30.2 8.5 112 16-142 323-464 (538)
277 COG1136 SalX ABC-type antimicr 65.7 51 0.0011 26.3 7.9 65 7-91 152-216 (226)
278 TIGR02425 decarb_PcaC 4-carbox 64.2 23 0.0005 25.3 5.3 71 73-143 28-103 (123)
279 TIGR02329 propionate_PrpR prop 64.1 43 0.00093 30.2 8.1 114 16-143 308-450 (526)
280 PRK10869 recombination and rep 63.2 54 0.0012 29.8 8.6 56 14-91 451-506 (553)
281 COG1131 CcmA ABC-type multidru 63.1 8.8 0.00019 31.7 3.4 58 7-79 146-203 (293)
282 COG1485 Predicted ATPase [Gene 62.1 12 0.00027 31.8 4.0 45 16-77 131-176 (367)
283 COG1241 MCM2 Predicted ATPase 61.9 22 0.00048 33.1 5.9 84 77-181 507-593 (682)
284 COG4598 HisP ABC-type histidin 61.7 15 0.00033 28.6 4.1 51 5-70 160-210 (256)
285 cd01393 recA_like RecA is a b 61.5 13 0.00028 28.9 4.0 54 13-70 112-166 (226)
286 PF02969 TAF: TATA box binding 61.2 16 0.00034 23.2 3.5 32 130-178 35-66 (66)
287 cd03216 ABC_Carb_Monos_I This 60.5 9.4 0.0002 28.3 2.8 21 6-26 91-111 (163)
288 PF13173 AAA_14: AAA domain 59.3 15 0.00032 25.9 3.6 13 15-27 61-73 (128)
289 TIGR01166 cbiO cobalt transpor 59.2 17 0.00037 27.5 4.2 19 7-25 137-155 (190)
290 PF02269 TFIID-18kDa: Transcri 59.1 4.1 8.9E-05 27.7 0.6 64 117-199 21-84 (93)
291 TIGR00929 VirB4_CagE type IV s 57.9 51 0.0011 30.9 7.8 66 13-93 627-697 (785)
292 cd01124 KaiC KaiC is a circadi 57.7 36 0.00077 25.3 5.7 25 5-29 85-109 (187)
293 PHA00350 putative assembly pro 57.3 10 0.00022 32.9 2.8 68 15-87 81-159 (399)
294 cd03281 ABC_MSH5_euk MutS5 hom 57.1 49 0.0011 25.8 6.5 55 14-80 107-161 (213)
295 cd07978 TAF13 The TATA Binding 57.1 11 0.00023 25.6 2.4 62 117-198 22-83 (92)
296 COG2874 FlaH Predicted ATPases 56.8 28 0.00061 27.7 4.9 67 4-84 112-178 (235)
297 PRK13540 cytochrome c biogenes 56.1 18 0.00039 27.7 3.8 56 7-78 137-192 (200)
298 PF09820 AAA-ATPase_like: Pred 55.9 42 0.00091 27.5 6.2 18 14-31 142-159 (284)
299 PRK09183 transposase/IS protei 55.8 17 0.00036 29.4 3.8 22 6-28 156-177 (259)
300 cd03282 ABC_MSH4_euk MutS4 hom 55.8 26 0.00057 27.2 4.7 59 2-77 97-155 (204)
301 PRK11823 DNA repair protein Ra 55.4 50 0.0011 29.0 6.9 51 3-53 144-196 (446)
302 PRK09694 helicase Cas3; Provis 55.2 23 0.00051 34.0 5.0 54 13-82 437-490 (878)
303 cd03231 ABC_CcmA_heme_exporter 55.1 20 0.00044 27.4 4.0 20 7-26 135-154 (201)
304 cd03284 ABC_MutS1 MutS1 homolo 54.6 43 0.00093 26.2 5.8 11 14-24 108-118 (216)
305 cd03298 ABC_ThiQ_thiamine_tran 54.5 12 0.00025 28.9 2.5 20 7-26 138-157 (211)
306 cd01122 GP4d_helicase GP4d_hel 54.2 45 0.00097 26.7 6.0 22 9-30 134-155 (271)
307 COG1674 FtsK DNA segregation A 54.2 11 0.00025 36.0 2.8 77 14-103 638-715 (858)
308 cd03255 ABC_MJ0796_Lo1CDE_FtsE 53.9 13 0.00029 28.7 2.9 19 7-25 150-168 (218)
309 PF13654 AAA_32: AAA domain; P 53.4 42 0.00092 30.1 6.1 101 62-180 387-506 (509)
310 cd07981 TAF12 TATA Binding Pro 52.9 46 0.001 21.2 4.8 62 97-180 6-67 (72)
311 smart00534 MUTSac ATPase domai 52.8 40 0.00088 25.5 5.3 13 14-26 77-89 (185)
312 PRK11300 livG leucine/isoleuci 52.8 13 0.00029 29.5 2.7 56 7-77 163-218 (255)
313 TIGR03864 PQQ_ABC_ATP ABC tran 52.6 18 0.0004 28.4 3.4 20 7-26 142-161 (236)
314 PRK13898 type IV secretion sys 52.6 35 0.00076 32.4 5.8 68 13-95 640-712 (800)
315 PRK11629 lolD lipoprotein tran 52.3 14 0.0003 29.1 2.7 20 7-26 155-174 (233)
316 COG1066 Sms Predicted ATP-depe 51.9 65 0.0014 28.3 6.7 29 3-31 156-184 (456)
317 PRK13538 cytochrome c biogenes 51.9 22 0.00048 27.2 3.8 56 7-78 139-194 (204)
318 TIGR02746 TraC-F-type type-IV 51.8 53 0.0011 31.0 6.9 68 13-93 635-707 (797)
319 cd03267 ABC_NatA_like Similar 51.4 18 0.00038 28.6 3.2 20 7-26 163-182 (236)
320 PF06144 DNA_pol3_delta: DNA p 51.3 85 0.0018 23.0 6.8 92 17-124 59-156 (172)
321 PF09807 DUF2348: Uncharacteri 51.2 1.3E+02 0.0028 24.2 8.2 26 4-29 124-149 (249)
322 cd08316 Death_FAS_TNFRSF6 Deat 50.3 80 0.0017 21.6 6.1 20 116-136 22-41 (97)
323 COG1121 ZnuC ABC-type Mn/Zn tr 50.1 29 0.00062 28.2 4.2 65 6-90 148-212 (254)
324 cd03256 ABC_PhnC_transporter A 49.7 17 0.00036 28.6 2.8 19 8-26 155-173 (241)
325 COG4565 CitB Response regulato 49.2 1.3E+02 0.0029 23.8 10.3 68 3-88 34-102 (224)
326 TIGR02211 LolD_lipo_ex lipopro 49.1 18 0.0004 28.0 2.9 19 7-25 151-169 (221)
327 COG1119 ModF ABC-type molybden 49.1 67 0.0015 26.1 6.0 64 5-82 179-242 (257)
328 cd03228 ABCC_MRP_Like The MRP 48.9 32 0.00069 25.6 4.1 18 8-25 107-124 (171)
329 cd03259 ABC_Carb_Solutes_like 48.9 16 0.00035 28.2 2.5 19 7-25 140-158 (213)
330 PRK13541 cytochrome c biogenes 48.4 91 0.002 23.6 6.7 56 8-79 134-189 (195)
331 COG1106 Predicted ATPases [Gen 48.3 17 0.00038 31.1 2.8 51 17-83 272-323 (371)
332 cd03301 ABC_MalK_N The N-termi 48.1 16 0.00034 28.2 2.4 20 7-26 140-159 (213)
333 cd03232 ABC_PDR_domain2 The pl 47.7 73 0.0016 24.1 6.0 20 7-26 118-137 (192)
334 TIGR02770 nickel_nikD nickel i 47.6 19 0.00041 28.3 2.8 20 7-26 135-154 (230)
335 PF00158 Sigma54_activat: Sigm 47.6 34 0.00074 25.7 4.1 58 15-86 93-156 (168)
336 PRK13652 cbiO cobalt transport 47.5 19 0.00041 29.3 2.8 20 6-25 146-165 (277)
337 COG4555 NatA ABC-type Na+ tran 47.3 59 0.0013 25.9 5.3 17 8-24 144-160 (245)
338 KOG0479|consensus 47.3 42 0.0009 30.9 5.0 62 18-90 401-481 (818)
339 PRK11701 phnK phosphonate C-P 46.9 21 0.00045 28.6 3.0 20 7-26 161-180 (258)
340 PRK13645 cbiO cobalt transport 46.8 16 0.00034 29.9 2.3 20 7-26 160-179 (289)
341 cd03226 ABC_cobalt_CbiO_domain 46.7 19 0.00042 27.6 2.7 19 7-25 136-154 (205)
342 cd03240 ABC_Rad50 The catalyti 46.7 24 0.00052 27.3 3.2 21 8-28 132-152 (204)
343 KOG3423|consensus 46.6 1.3E+02 0.0028 22.8 6.9 86 98-184 73-169 (176)
344 cd03293 ABC_NrtD_SsuB_transpor 46.5 18 0.0004 28.0 2.5 19 7-25 141-159 (220)
345 PRK13635 cbiO cobalt transport 46.3 21 0.00045 29.1 2.9 20 7-26 150-169 (279)
346 PRK10253 iron-enterobactin tra 46.1 21 0.00045 28.7 2.9 20 7-26 153-172 (265)
347 TIGR00960 3a0501s02 Type II (G 46.1 23 0.00049 27.4 3.0 19 7-25 148-166 (216)
348 TIGR02012 tigrfam_recA protein 45.8 46 0.00099 28.0 4.9 62 6-71 124-190 (321)
349 TIGR03740 galliderm_ABC gallid 45.8 23 0.00051 27.5 3.1 20 7-26 134-153 (223)
350 cd03295 ABC_OpuCA_Osmoprotecti 45.6 17 0.00037 28.7 2.3 20 7-26 145-164 (242)
351 PRK13537 nodulation ABC transp 45.5 25 0.00054 29.1 3.3 56 7-78 148-203 (306)
352 cd03238 ABC_UvrA The excision 45.5 28 0.00061 26.4 3.4 20 7-26 97-118 (176)
353 cd03297 ABC_ModC_molybdenum_tr 45.5 19 0.00041 27.8 2.5 19 7-25 141-159 (214)
354 smart00487 DEXDc DEAD-like hel 45.0 53 0.0011 23.9 4.8 62 16-93 130-191 (201)
355 cd03276 ABC_SMC6_euk Eukaryoti 45.0 63 0.0014 24.8 5.3 16 13-28 129-144 (198)
356 cd00984 DnaB_C DnaB helicase C 44.9 95 0.0021 24.2 6.5 18 12-29 120-137 (242)
357 cd03257 ABC_NikE_OppD_transpor 44.8 20 0.00043 27.9 2.5 20 7-26 155-174 (228)
358 PF10236 DAP3: Mitochondrial r 44.5 1.8E+02 0.004 24.1 11.3 116 15-133 156-307 (309)
359 TIGR01184 ntrCD nitrate transp 44.5 20 0.00044 28.1 2.5 19 7-25 124-142 (230)
360 cd03265 ABC_DrrA DrrA is the A 44.4 23 0.0005 27.5 2.8 20 7-26 141-160 (220)
361 PRK13543 cytochrome c biogenes 44.0 81 0.0018 24.3 5.9 56 7-78 147-202 (214)
362 PRK10418 nikD nickel transport 43.9 21 0.00046 28.5 2.6 20 7-26 150-169 (254)
363 PRK00409 recombination and DNA 43.7 45 0.00097 31.7 5.0 59 3-78 397-455 (782)
364 PRK10938 putative molybdenum t 43.7 38 0.00081 29.9 4.3 57 7-78 411-467 (490)
365 cd03296 ABC_CysA_sulfate_impor 43.6 21 0.00046 28.1 2.5 20 7-26 146-165 (239)
366 cd03235 ABC_Metallic_Cations A 43.5 73 0.0016 24.4 5.5 18 7-24 142-159 (213)
367 cd03214 ABC_Iron-Siderophores_ 43.4 25 0.00054 26.4 2.8 20 7-26 107-126 (180)
368 PRK13853 type IV secretion sys 43.4 34 0.00073 32.5 4.2 67 13-94 625-696 (789)
369 PRK09544 znuC high-affinity zi 43.4 23 0.00049 28.4 2.7 20 7-26 130-149 (251)
370 PRK11231 fecE iron-dicitrate t 43.3 25 0.00055 28.0 3.0 20 7-26 148-167 (255)
371 PRK11153 metN DL-methionine tr 43.3 21 0.00046 30.1 2.6 19 7-25 150-168 (343)
372 PRK09984 phosphonate/organopho 43.2 22 0.00049 28.4 2.7 20 7-26 162-181 (262)
373 PRK13695 putative NTPase; Prov 43.2 90 0.002 23.1 5.8 73 15-107 96-170 (174)
374 TIGR02769 nickel_nikE nickel i 43.0 23 0.00049 28.5 2.7 19 7-25 160-178 (265)
375 TIGR02315 ABC_phnC phosphonate 42.9 25 0.00054 27.7 2.9 20 7-26 155-174 (243)
376 COG5248 TAF19 Transcription in 42.8 33 0.00071 24.0 2.9 68 118-185 30-102 (126)
377 cd03294 ABC_Pro_Gly_Bertaine T 42.8 23 0.00049 28.6 2.6 19 7-25 170-188 (269)
378 PRK11248 tauB taurine transpor 42.7 22 0.00048 28.5 2.5 19 7-25 138-156 (255)
379 cd03261 ABC_Org_Solvent_Resist 42.7 22 0.00048 27.9 2.5 19 7-25 146-164 (235)
380 PF07034 ORC3_N: Origin recogn 42.4 2.1E+02 0.0044 24.1 11.5 76 15-106 199-279 (330)
381 cd01127 TrwB Bacterial conjuga 42.3 1E+02 0.0022 26.7 6.7 75 14-108 269-351 (410)
382 PRK11831 putative ABC transpor 42.2 23 0.0005 28.6 2.6 18 7-24 153-170 (269)
383 COG1618 Predicted nucleotide k 42.2 1.1E+02 0.0025 23.3 6.0 71 16-108 101-174 (179)
384 PRK13634 cbiO cobalt transport 42.2 23 0.0005 29.0 2.6 20 7-26 155-174 (290)
385 cd01125 repA Hexameric Replica 42.2 1.7E+02 0.0036 23.0 9.5 90 3-100 99-198 (239)
386 cd03258 ABC_MetN_methionine_tr 42.2 22 0.00047 27.9 2.4 19 7-25 150-168 (233)
387 PF09707 Cas_Cas2CT1978: CRISP 42.2 51 0.0011 22.0 3.8 46 65-110 2-50 (86)
388 PRK10908 cell division protein 42.2 27 0.00058 27.1 2.9 20 7-26 147-166 (222)
389 cd03262 ABC_HisP_GlnQ_permease 42.1 75 0.0016 24.3 5.4 18 8-25 146-163 (213)
390 PRK13632 cbiO cobalt transport 42.0 33 0.00072 27.7 3.5 20 7-26 152-171 (271)
391 TIGR01189 ccmA heme ABC export 42.0 48 0.001 25.2 4.3 19 8-26 138-156 (198)
392 cd03269 ABC_putative_ATPase Th 41.9 27 0.00058 26.8 2.8 20 7-26 138-157 (210)
393 cd01394 radB RadB. The archaea 41.9 45 0.00097 25.7 4.1 84 6-94 95-188 (218)
394 COG2204 AtoC Response regulato 41.9 2E+02 0.0044 25.6 8.4 119 16-144 236-375 (464)
395 PRK06526 transposase; Provisio 41.8 31 0.00066 27.9 3.2 15 14-28 158-172 (254)
396 cd03246 ABCC_Protease_Secretio 41.8 31 0.00068 25.7 3.1 19 7-25 106-124 (173)
397 PRK15112 antimicrobial peptide 41.7 24 0.00053 28.4 2.6 20 7-26 159-178 (267)
398 PRK13637 cbiO cobalt transport 41.7 24 0.00051 28.9 2.6 20 7-26 154-173 (287)
399 cd03229 ABC_Class3 This class 41.6 26 0.00056 26.2 2.6 20 7-26 110-129 (178)
400 PRK14243 phosphate transporter 41.5 36 0.00077 27.4 3.6 19 7-25 161-179 (264)
401 cd03225 ABC_cobalt_CbiO_domain 41.4 26 0.00057 26.9 2.7 20 7-26 144-163 (211)
402 cd03268 ABC_BcrA_bacitracin_re 41.4 82 0.0018 24.0 5.5 19 8-26 137-155 (208)
403 TIGR01070 mutS1 DNA mismatch r 41.1 67 0.0015 30.8 5.8 59 2-76 660-718 (840)
404 PRK13633 cobalt transporter AT 41.0 31 0.00067 28.0 3.2 20 7-26 154-173 (280)
405 cd03243 ABC_MutS_homologs The 40.9 68 0.0015 24.5 5.0 13 14-26 107-119 (202)
406 PRK14260 phosphate ABC transpo 40.9 38 0.00082 27.1 3.6 19 7-25 160-178 (259)
407 PRK10419 nikE nickel transport 40.8 24 0.00052 28.5 2.5 20 7-26 161-180 (268)
408 PRK13644 cbiO cobalt transport 40.7 30 0.00064 28.1 3.0 20 7-26 146-165 (274)
409 cd03273 ABC_SMC2_euk Eukaryoti 40.4 1.2E+02 0.0026 24.0 6.5 56 14-91 187-242 (251)
410 TIGR02323 CP_lyasePhnK phospho 40.4 25 0.00055 27.9 2.5 19 7-25 158-176 (253)
411 PF08784 RPA_C: Replication pr 40.2 90 0.0019 21.0 5.0 41 98-139 49-89 (102)
412 PRK10619 histidine/lysine/argi 40.1 29 0.00063 27.7 2.9 19 7-25 162-180 (257)
413 PRK10771 thiQ thiamine transpo 40.0 27 0.00059 27.3 2.6 20 7-26 139-158 (232)
414 PRK11264 putative amino-acid A 40.0 31 0.00066 27.3 3.0 20 7-26 154-173 (250)
415 COG2909 MalT ATP-dependent tra 39.7 1.3E+02 0.0028 28.9 7.1 102 10-130 124-229 (894)
416 PF02463 SMC_N: RecF/RecN/SMC 39.5 57 0.0012 25.1 4.4 23 6-28 149-171 (220)
417 cd03213 ABCG_EPDR ABCG transpo 39.4 1.2E+02 0.0026 22.9 6.1 20 7-26 121-140 (194)
418 PRK11614 livF leucine/isoleuci 39.3 29 0.00063 27.2 2.7 20 7-26 147-166 (237)
419 PRK13638 cbiO cobalt transport 39.2 30 0.00066 27.9 2.8 20 7-26 146-165 (271)
420 PF00270 DEAD: DEAD/DEAH box h 39.1 41 0.00089 24.3 3.4 15 15-29 119-133 (169)
421 PF11264 ThylakoidFormat: Thyl 39.1 58 0.0013 25.8 4.2 90 37-138 18-111 (216)
422 TIGR02314 ABC_MetN D-methionin 38.9 28 0.0006 29.5 2.6 20 7-26 150-169 (343)
423 cd03219 ABC_Mj1267_LivG_branch 38.5 92 0.002 24.2 5.5 20 7-26 153-172 (236)
424 TIGR01069 mutS2 MutS2 family p 38.4 74 0.0016 30.2 5.5 56 2-74 391-446 (771)
425 PRK08533 flagellar accessory p 38.4 80 0.0017 24.9 5.1 25 4-28 106-130 (230)
426 cd03292 ABC_FtsE_transporter F 38.3 81 0.0017 24.1 5.0 20 7-26 146-165 (214)
427 PRK13649 cbiO cobalt transport 38.1 32 0.0007 27.8 2.9 20 7-26 155-174 (280)
428 PRK13646 cbiO cobalt transport 38.0 28 0.00061 28.4 2.5 20 7-26 155-174 (286)
429 TIGR01618 phage_P_loop phage n 38.0 36 0.00078 26.9 3.0 54 14-70 80-142 (220)
430 cd01123 Rad51_DMC1_radA Rad51_ 37.8 40 0.00087 26.2 3.3 56 12-71 111-168 (235)
431 PRK14258 phosphate ABC transpo 37.8 31 0.00066 27.7 2.6 20 7-26 160-179 (261)
432 TIGR03269 met_CoM_red_A2 methy 37.7 33 0.00072 30.5 3.1 21 6-26 177-197 (520)
433 PRK15093 antimicrobial peptide 37.7 30 0.00065 29.0 2.6 19 7-25 168-186 (330)
434 PRK13641 cbiO cobalt transport 37.6 33 0.00072 28.0 2.9 19 7-25 155-173 (287)
435 TIGR03410 urea_trans_UrtE urea 37.5 1.2E+02 0.0025 23.6 5.9 55 7-76 141-195 (230)
436 cd03264 ABC_drug_resistance_li 37.4 48 0.001 25.4 3.6 19 7-25 140-158 (211)
437 PRK10575 iron-hydroxamate tran 37.2 95 0.0021 24.9 5.4 21 6-26 156-176 (265)
438 TIGR01188 drrA daunorubicin re 37.2 39 0.00084 27.8 3.2 18 7-24 134-151 (302)
439 TIGR03522 GldA_ABC_ATP gliding 37.1 53 0.0011 27.0 4.0 19 7-25 143-161 (301)
440 cd03247 ABCC_cytochrome_bd The 37.0 1.1E+02 0.0024 22.7 5.5 20 7-26 108-127 (178)
441 KOG4284|consensus 36.9 70 0.0015 29.9 4.9 50 18-82 170-219 (980)
442 PRK09493 glnQ glutamine ABC tr 36.9 36 0.00078 26.8 2.9 20 7-26 146-165 (240)
443 PRK11558 putative ssRNA endonu 36.9 84 0.0018 21.5 4.2 47 64-110 3-52 (97)
444 PRK13640 cbiO cobalt transport 36.9 36 0.00079 27.7 3.0 19 7-25 153-171 (282)
445 cd03215 ABC_Carb_Monos_II This 36.7 1.1E+02 0.0023 22.9 5.4 19 8-26 115-133 (182)
446 PRK09580 sufC cysteine desulfu 36.7 39 0.00085 26.6 3.1 20 7-26 155-174 (248)
447 TIGR00634 recN DNA repair prot 36.7 58 0.0013 29.5 4.5 55 15-91 462-516 (563)
448 cd03263 ABC_subfamily_A The AB 36.6 45 0.00098 25.7 3.4 20 7-26 143-162 (220)
449 PRK11247 ssuB aliphatic sulfon 36.5 31 0.00067 27.7 2.5 19 7-25 143-161 (257)
450 smart00803 TAF TATA box bindin 36.5 42 0.00092 21.0 2.6 32 130-178 34-65 (65)
451 cd03224 ABC_TM1139_LivF_branch 36.4 98 0.0021 23.8 5.3 19 8-26 143-161 (222)
452 TIGR01277 thiQ thiamine ABC tr 36.4 32 0.0007 26.5 2.5 19 8-26 139-157 (213)
453 COG4175 ProV ABC-type proline/ 36.3 74 0.0016 27.1 4.6 69 9-95 176-251 (386)
454 PRK15056 manganese/iron transp 36.3 40 0.00086 27.2 3.1 20 7-26 152-171 (272)
455 PRK13642 cbiO cobalt transport 36.2 37 0.0008 27.5 2.9 19 7-25 150-168 (277)
456 COG1134 TagH ABC-type polysacc 36.2 30 0.00064 28.0 2.2 24 4-27 154-177 (249)
457 PRK10895 lipopolysaccharide AB 36.1 36 0.00078 26.8 2.8 20 7-26 147-166 (241)
458 cd03288 ABCC_SUR2 The SUR doma 36.1 70 0.0015 25.5 4.5 20 7-26 166-185 (257)
459 PRK14261 phosphate ABC transpo 36.0 45 0.00099 26.4 3.4 20 7-26 159-178 (253)
460 COG1116 TauB ABC-type nitrate/ 36.0 72 0.0016 25.8 4.4 18 6-23 139-156 (248)
461 PRK14259 phosphate ABC transpo 35.9 50 0.0011 26.6 3.6 20 7-26 164-183 (269)
462 PRK14237 phosphate transporter 35.8 45 0.00098 26.8 3.4 20 7-26 173-192 (267)
463 TIGR03771 anch_rpt_ABC anchore 35.8 38 0.00083 26.4 2.8 20 7-26 123-142 (223)
464 cd03260 ABC_PstB_phosphate_tra 35.8 51 0.0011 25.6 3.6 20 7-26 151-170 (227)
465 cd03285 ABC_MSH2_euk MutS2 hom 35.8 1.7E+02 0.0037 22.9 6.5 11 14-24 108-118 (222)
466 PRK13650 cbiO cobalt transport 35.6 35 0.00077 27.7 2.7 20 7-26 150-169 (279)
467 PHA00520 packaging NTPase P4 35.6 30 0.00065 28.8 2.2 56 13-72 181-236 (330)
468 cd03252 ABCC_Hemolysin The ABC 35.5 59 0.0013 25.4 3.9 20 7-26 148-167 (237)
469 TIGR03873 F420-0_ABC_ATP propo 35.3 43 0.00094 26.6 3.2 20 7-26 147-166 (256)
470 PRK11650 ugpC glycerol-3-phosp 35.3 35 0.00076 29.0 2.7 19 7-25 144-162 (356)
471 PRK13639 cbiO cobalt transport 35.2 40 0.00087 27.3 3.0 20 7-26 147-166 (275)
472 TIGR02673 FtsE cell division A 35.2 1.1E+02 0.0024 23.3 5.4 20 7-26 147-166 (214)
473 cd00983 recA RecA is a bacter 35.1 96 0.0021 26.2 5.2 61 7-71 125-190 (325)
474 TIGR01288 nodI ATP-binding ABC 35.1 41 0.00088 27.7 3.0 18 7-24 145-162 (303)
475 PRK10584 putative ABC transpor 35.1 45 0.00098 25.9 3.2 18 8-25 157-174 (228)
476 TIGR03411 urea_trans_UrtD urea 34.9 1.1E+02 0.0023 24.1 5.3 54 7-77 153-206 (242)
477 COG1126 GlnQ ABC-type polar am 34.7 74 0.0016 25.5 4.2 40 7-57 146-185 (240)
478 cd03230 ABC_DR_subfamily_A Thi 34.4 1.4E+02 0.003 22.1 5.6 20 7-26 105-124 (173)
479 TIGR03005 ectoine_ehuA ectoine 34.4 40 0.00086 26.8 2.8 20 7-26 156-175 (252)
480 cd03266 ABC_NatA_sodium_export 34.3 1.2E+02 0.0027 23.2 5.5 20 7-26 146-165 (218)
481 cd03251 ABCC_MsbA MsbA is an e 34.3 73 0.0016 24.8 4.3 19 8-26 149-167 (234)
482 cd01126 TraG_VirD4 The TraG/Tr 34.3 1.4E+02 0.0031 25.3 6.4 74 15-108 263-344 (384)
483 CHL00131 ycf16 sulfate ABC tra 34.2 49 0.0011 26.2 3.3 18 7-24 161-178 (252)
484 PRK13636 cbiO cobalt transport 34.1 33 0.00072 27.9 2.3 20 7-26 151-170 (283)
485 cd03280 ABC_MutS2 MutS2 homolo 33.9 1.5E+02 0.0033 22.6 5.9 13 14-26 107-119 (200)
486 PRK13647 cbiO cobalt transport 33.9 42 0.00091 27.2 2.9 20 7-26 148-167 (274)
487 PRK13643 cbiO cobalt transport 33.8 1E+02 0.0022 25.1 5.2 20 7-26 154-173 (288)
488 PF01823 MACPF: MAC/Perforin d 33.8 47 0.001 25.3 3.0 33 170-202 46-78 (212)
489 TIGR02324 CP_lyasePhnL phospho 33.8 42 0.00092 26.0 2.8 20 7-26 159-178 (224)
490 cd03237 ABC_RNaseL_inhibitor_d 33.7 38 0.00082 27.0 2.6 20 7-26 125-144 (246)
491 PF12703 plasmid_Toxin: Toxin 33.6 1.3E+02 0.0028 19.2 4.7 16 167-182 56-71 (74)
492 COG4586 ABC-type uncharacteriz 33.4 78 0.0017 26.4 4.2 62 6-82 165-226 (325)
493 TIGR02142 modC_ABC molybdenum 33.4 37 0.00081 28.7 2.6 20 7-26 141-160 (354)
494 cd03222 ABC_RNaseL_inhibitor T 33.4 46 0.00099 25.2 2.8 19 8-26 82-100 (177)
495 PRK00103 rRNA large subunit me 33.3 2E+02 0.0044 21.4 7.7 43 62-107 99-144 (157)
496 cd03234 ABCG_White The White s 33.3 1.6E+02 0.0034 22.9 6.0 19 8-26 154-172 (226)
497 cd03218 ABC_YhbG The ABC trans 33.2 1.2E+02 0.0026 23.5 5.4 20 7-26 143-162 (232)
498 PF06992 Phage_lambda_P: Repli 33.2 2.6E+02 0.0056 22.5 10.5 96 88-200 116-227 (233)
499 PF00072 Response_reg: Respons 33.2 1.4E+02 0.0031 19.5 5.4 19 4-22 32-50 (112)
500 PRK13648 cbiO cobalt transport 33.0 61 0.0013 26.0 3.7 20 7-26 152-171 (269)
No 1
>KOG0738|consensus
Probab=100.00 E-value=5.8e-50 Score=328.35 Aligned_cols=201 Identities=52% Similarity=0.886 Sum_probs=190.2
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
|-||-+|..|+.++||+|||||||+|+++|++.++++.++|+.++||.+|||+.+.......|+|+|+||.||.||.|++
T Consensus 291 KlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlr 370 (491)
T KOG0738|consen 291 KLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALR 370 (491)
T ss_pred HHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHH
Confidence 56899999999999999999999999999999999999999999999999999997544566999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhh
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQ 161 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~ 161 (202)
|||++.|+||+|+.++|..+|+..++..+.+++++++.||..++||||+||.++|++|.+.+++|...+..+.++.....
T Consensus 371 RRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lak 450 (491)
T KOG0738|consen 371 RRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAK 450 (491)
T ss_pred HHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888777766
Q ss_pred ccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCC
Q psy3540 162 EDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGSH 202 (202)
Q Consensus 162 ~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~~ 202 (202)
+....|++.+||+.|+++++||++..++.+|++|.++||+.
T Consensus 451 E~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS~ 491 (491)
T KOG0738|consen 451 EEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGSC 491 (491)
T ss_pred hccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcCC
Confidence 66667999999999999999999999999999999999984
No 2
>KOG0730|consensus
Probab=100.00 E-value=1.2e-43 Score=306.85 Aligned_cols=177 Identities=32% Similarity=0.579 Sum_probs=168.0
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
|+|+++|++|++.+||||||||||++++.|++ +.++...|++++||++|||+... .+|+|||+||+|+.||+|++
T Consensus 514 r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g-~~~~v~~RVlsqLLtEmDG~e~~----k~V~ViAATNRpd~ID~ALl 588 (693)
T KOG0730|consen 514 RAIREVFRKARQVAPCIIFFDEIDALAGSRGG-SSSGVTDRVLSQLLTEMDGLEAL----KNVLVIAATNRPDMIDPALL 588 (693)
T ss_pred HHHHHHHHHHhhcCCeEEehhhHHhHhhccCC-CccchHHHHHHHHHHHccccccc----CcEEEEeccCChhhcCHHHc
Confidence 78999999999999999999999999999974 44588999999999999999987 88999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 159 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~ 159 (202)
| |||+.||||+||.+.|.+||+.+++++++.+++|+.+||+.|+||||+||..+|++|++.|+++.+..
T Consensus 589 RPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a--------- 659 (693)
T KOG0730|consen 589 RPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEA--------- 659 (693)
T ss_pred CCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccc---------
Confidence 9 99999999999999999999999999999999999999999999999999999999999999997752
Q ss_pred hhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy3540 160 KQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNE 198 (202)
Q Consensus 160 ~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~ 198 (202)
..|+.+||++|++..+|+++..++++|++|.+.
T Consensus 660 ------~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 660 ------TEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ------ccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 269999999999999999999999999999864
No 3
>KOG0733|consensus
Probab=100.00 E-value=2.3e-42 Score=296.46 Aligned_cols=193 Identities=30% Similarity=0.488 Sum_probs=170.3
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
|+||.+|+.||..+||||||||+|+|++.|+.++ .+.+.|++|+||++|||+..+ .+|+|||+||+|+-||||++
T Consensus 591 rAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R----~gV~viaATNRPDiIDpAiL 665 (802)
T KOG0733|consen 591 RAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEER----RGVYVIAATNRPDIIDPAIL 665 (802)
T ss_pred HHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccc----cceEEEeecCCCcccchhhc
Confidence 7899999999999999999999999999996544 777899999999999999987 88999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhc--CcccCCcccHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHHhcCChhH
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLE--GVVIDVNLDFHKISKMLE--GYTGSDIANLARDAAMMSIRRKIMGQTPAQ 155 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~--~~~~~~~~~~~~la~~t~--g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~ 155 (202)
| |||+.+++++|+.++|.+||+.+++ +.+++.++|+++||..+. ||||+||..||++|.+.|+++.........
T Consensus 666 RPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~ 745 (802)
T KOG0733|consen 666 RPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSE 745 (802)
T ss_pred CCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccC
Confidence 9 9999999999999999999999998 788899999999999987 999999999999999999998765221110
Q ss_pred HhhhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC
Q psy3540 156 IKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 200 (202)
Q Consensus 156 ~~~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~ 200 (202)
. ..........+|+.||++|+++++||++..+-..|+...+.+|
T Consensus 746 ~-~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 746 D-DVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred c-ccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 0 0000111335899999999999999999999999999998876
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-41 Score=274.31 Aligned_cols=160 Identities=30% Similarity=0.491 Sum_probs=148.8
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCC--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
|-+|++|+.|+.++||||||||||+|+++|... +.....+|+.-+||++|||+... ++|=||+|||+|+.||||
T Consensus 231 RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~----~nvKVI~ATNR~D~LDPA 306 (406)
T COG1222 231 RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR----GNVKVIMATNRPDILDPA 306 (406)
T ss_pred HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC----CCeEEEEecCCccccChh
Confidence 568999999999999999999999999999543 23345678999999999999987 889999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
|+| |||++|+||+||.++|.+||+.|.+++.+..++||+.||..|+|+|||||+++|.+|.+.|+++...
T Consensus 307 LLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~-------- 378 (406)
T COG1222 307 LLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD-------- 378 (406)
T ss_pred hcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC--------
Confidence 999 9999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRK 182 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~P 182 (202)
.||++||.+|..++.-
T Consensus 379 ---------~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 379 ---------EVTMEDFLKAVEKVVK 394 (406)
T ss_pred ---------eecHHHHHHHHHHHHh
Confidence 7999999999999754
No 5
>KOG0733|consensus
Probab=100.00 E-value=1.2e-40 Score=285.89 Aligned_cols=197 Identities=29% Similarity=0.520 Sum_probs=171.6
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
++||++|..|+.++|||+||||||+|.++|.. .+.++.+|++.+||++||++......+.+|+||||||+|++|||||+
T Consensus 269 kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR 347 (802)
T KOG0733|consen 269 KKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR 347 (802)
T ss_pred HHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHh
Confidence 68999999999999999999999999999965 67788999999999999999887444688999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCCh------
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTP------ 153 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~------ 153 (202)
| |||++|.++.|++.+|.+||+.+++++.++.++|+.+||..|+||+|+||.+||.+|+..|++|..+...+
T Consensus 348 RaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~ 427 (802)
T KOG0733|consen 348 RAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVP 427 (802)
T ss_pred ccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCC
Confidence 9 99999999999999999999999999999999999999999999999999999999999999998762210
Q ss_pred ---h---------H--Hh---------hh----------------hhccCCCCCcHHHHHHHHHHhCC-----------C
Q psy3540 154 ---A---------Q--IK---------EI----------------KQEDIDLPVTEKDFREAIARCRK-----------S 183 (202)
Q Consensus 154 ---~---------~--~~---------~~----------------~~~~~~~~it~~df~~Al~~~~P-----------s 183 (202)
+ . +. .. .+....+.|+.+||++|+..++| .
T Consensus 428 ~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPd 507 (802)
T KOG0733|consen 428 ISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPD 507 (802)
T ss_pred ccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCC
Confidence 0 0 00 00 01222467999999999999986 4
Q ss_pred CCHHHHHHHHHHHHHh
Q psy3540 184 VTAHDLSKYDSWMNEF 199 (202)
Q Consensus 184 ~s~~~~~~~~~~~~~~ 199 (202)
|+|+++..+++.+.++
T Consensus 508 VtW~dIGaL~~vR~eL 523 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLEL 523 (802)
T ss_pred CChhhcccHHHHHHHH
Confidence 6789999888887664
No 6
>KOG0736|consensus
Probab=100.00 E-value=1.4e-40 Score=291.21 Aligned_cols=197 Identities=29% Similarity=0.442 Sum_probs=179.0
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC-cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS-EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAF 80 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al 80 (202)
+|+|++|+.||..+||||||||+|+++++|+..+ +++...|++++||.+|||+... ....|+||||||+|+.|||||
T Consensus 751 ~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~--~s~~VFViGATNRPDLLDpAL 828 (953)
T KOG0736|consen 751 ENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS--SSQDVFVIGATNRPDLLDPAL 828 (953)
T ss_pred HHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC--CCCceEEEecCCCccccChhh
Confidence 6999999999999999999999999999998644 4578999999999999999974 458899999999999999999
Q ss_pred Hh--cccceeeecCC-CHHHHHHHHHHHhcCcccCCcccHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHhcCChhHH
Q psy3540 81 RR--RFEKRVYIPLP-NEWARYQLLTLCLEGVVIDVNLDFHKISKML-EGYTGSDIANLARDAAMMSIRRKIMGQTPAQI 156 (202)
Q Consensus 81 ~r--rf~~~i~i~~P-~~~~R~~il~~~l~~~~~~~~~~~~~la~~t-~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~ 156 (202)
+| |||+-+|++++ +.+.+..+|++..++..++.++|+.++|+++ ..|||||+-++|.+|.+.|++|.....+.+..
T Consensus 829 LRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~ 908 (953)
T KOG0736|consen 829 LRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTI 908 (953)
T ss_pred cCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99 99999999998 7789999999999999999999999999999 48999999999999999999998876554444
Q ss_pred hhhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC
Q psy3540 157 KEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 200 (202)
Q Consensus 157 ~~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~ 200 (202)
...........|+++||.+|+++++||+|..++.+|+..+.+|.
T Consensus 909 ~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 909 SEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred cccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 44444556678999999999999999999999999999999986
No 7
>KOG0739|consensus
Probab=100.00 E-value=4.5e-41 Score=268.46 Aligned_cols=196 Identities=39% Similarity=0.682 Sum_probs=173.6
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
|-++++|+.||++.||||||||||++|+.| ++++++.++|+.++||.+|+|+... +++|+|+|+||-||.||.|++
T Consensus 212 kLVknLFemARe~kPSIIFiDEiDslcg~r-~enEseasRRIKTEfLVQMqGVG~d---~~gvLVLgATNiPw~LDsAIR 287 (439)
T KOG0739|consen 212 KLVKNLFEMARENKPSIIFIDEIDSLCGSR-SENESEASRRIKTEFLVQMQGVGND---NDGVLVLGATNIPWVLDSAIR 287 (439)
T ss_pred HHHHHHHHHHHhcCCcEEEeehhhhhccCC-CCCchHHHHHHHHHHHHhhhccccC---CCceEEEecCCCchhHHHHHH
Confidence 457899999999999999999999999988 4577889999999999999999875 688999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcC---------
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQ--------- 151 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~--------- 151 (202)
|||++.||||+|+..+|..||+.+++..++. .+-|+.+|+++|+||||+||.-+|+.|.++.+++..+..
T Consensus 288 RRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s 367 (439)
T KOG0739|consen 288 RRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPS 367 (439)
T ss_pred HHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCC
Confidence 9999999999999999999999999887755 677999999999999999999999999999999875421
Q ss_pred ChhHHhh--------------------hhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Q psy3540 152 TPAQIKE--------------------IKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 201 (202)
Q Consensus 152 ~~~~~~~--------------------~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~ 201 (202)
.+..+.. ..+...+++||+.||..++..++|++..+++.+.++|.+.||.
T Consensus 368 ~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 368 NPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred ChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence 1111000 1234457899999999999999999999999999999999996
No 8
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1e-36 Score=277.84 Aligned_cols=197 Identities=27% Similarity=0.494 Sum_probs=172.6
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
++|+.+|..|+..+||||||||+|+|++.|+....++...+++++||.+||++... .+|+||+|||+|+.||++++
T Consensus 533 ~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~----~~v~vI~aTn~~~~ld~all 608 (733)
T TIGR01243 533 KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL----SNVVVIAATNRPDILDPALL 608 (733)
T ss_pred HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC----CCEEEEEeCCChhhCCHhhc
Confidence 57999999999999999999999999999876555667789999999999999875 77999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 159 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~ 159 (202)
| |||+.+++|+|+.++|.+||+.++++.++..++++..||..|+||||+||+++|++|.+.|+++.............
T Consensus 609 RpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~ 688 (733)
T TIGR01243 609 RPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVG 688 (733)
T ss_pred CCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcc
Confidence 9 99999999999999999999999999999899999999999999999999999999999999986543211111110
Q ss_pred -hhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCC
Q psy3540 160 -KQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGSH 202 (202)
Q Consensus 160 -~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~~ 202 (202)
.+.....+|+.+||++|+++++||++.+++..|++|.++||..
T Consensus 689 ~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 732 (733)
T TIGR01243 689 EEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKRL 732 (733)
T ss_pred cccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccC
Confidence 0111235799999999999999999999999999999999863
No 9
>KOG0734|consensus
Probab=100.00 E-value=2.2e-36 Score=256.51 Aligned_cols=157 Identities=31% Similarity=0.509 Sum_probs=145.7
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
|.||++|+.|+.++||||||||||+++++|.....+ ..+..+|+||.+|||+..+ .+|+|||+||.|++||+||.
T Consensus 383 rRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qN----eGiIvigATNfpe~LD~AL~ 457 (752)
T KOG0734|consen 383 RRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQN----EGIIVIGATNFPEALDKALT 457 (752)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcC----CceEEEeccCChhhhhHHhc
Confidence 689999999999999999999999999999654443 7889999999999999986 89999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 159 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~ 159 (202)
| |||++|.+|.||...|.+||+.|+.+++++.++|+.-||+-|.||+|+||++||+.|+..|......
T Consensus 458 RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~---------- 527 (752)
T KOG0734|consen 458 RPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAE---------- 527 (752)
T ss_pred CCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcc----------
Confidence 9 9999999999999999999999999999999999999999999999999999999999888765432
Q ss_pred hhccCCCCCcHHHHHHHHHHh
Q psy3540 160 KQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 160 ~~~~~~~~it~~df~~Al~~~ 180 (202)
.|+++||+.|-.++
T Consensus 528 -------~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 528 -------MVTMKHLEFAKDRI 541 (752)
T ss_pred -------cccHHHHhhhhhhe
Confidence 69999999998875
No 10
>KOG0737|consensus
Probab=100.00 E-value=2.2e-35 Score=241.60 Aligned_cols=197 Identities=32% Similarity=0.555 Sum_probs=171.8
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
|.++.+|..|...+||||||||+|++++.| ..++++....+.++|...+||+.++ .+.+|+|+||||+|.++|.|++
T Consensus 173 Klv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~--~~~rVlVlgATNRP~DlDeAii 249 (386)
T KOG0737|consen 173 KLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSK--DSERVLVLGATNRPFDLDEAII 249 (386)
T ss_pred HHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCC--CCceEEEEeCCCCCccHHHHHH
Confidence 678899999999999999999999999999 5688999999999999999999997 5567999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCCh-hHHhh--
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTP-AQIKE-- 158 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~-~~~~~-- 158 (202)
||+.+.++|++|+..+|..||+-++++..+++++|+..+|..|+||||+||+++|+.|++.+++........ ...+.
T Consensus 250 RR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~ 329 (386)
T KOG0737|consen 250 RRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKAI 329 (386)
T ss_pred HhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999988765310 00110
Q ss_pred --hhh------ccCCCCCcHHHHHHHHHHhCCCCCHHHH--HHHHHHHHHhCC
Q psy3540 159 --IKQ------EDIDLPVTEKDFREAIARCRKSVTAHDL--SKYDSWMNEFGS 201 (202)
Q Consensus 159 --~~~------~~~~~~it~~df~~Al~~~~Ps~s~~~~--~~~~~~~~~~~~ 201 (202)
... ....++++++||..|..++-++++.+.. .....|.+.||.
T Consensus 330 ~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 330 ADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred hhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 011 1225799999999999999888765443 468999998875
No 11
>KOG0740|consensus
Probab=100.00 E-value=9.9e-36 Score=250.63 Aligned_cols=194 Identities=43% Similarity=0.646 Sum_probs=172.9
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
|.||.+|+.|+..+|+||||||+|.++.+| ++++++.+.|+.+++|.++++.... ++++|+||||||+||.+|.|++
T Consensus 232 K~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~--~~drvlvigaTN~P~e~Dea~~ 308 (428)
T KOG0740|consen 232 KLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSA--PDDRVLVIGATNRPWELDEAAR 308 (428)
T ss_pred HHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCC--CCCeEEEEecCCCchHHHHHHH
Confidence 679999999999999999999999999999 6678888999999999999999887 6689999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhh
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIK 160 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~ 160 (202)
|||.+.++||+|+.++|..+|+.+++..+.. .+.++..||+.|+|||++||.++|++|++..++..... ......
T Consensus 309 Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~----~~~~~~ 384 (428)
T KOG0740|consen 309 RRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT----TDLEFI 384 (428)
T ss_pred HHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc----hhhhhc
Confidence 9999999999999999999999999776433 56799999999999999999999999999988775431 011112
Q ss_pred hccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCC
Q psy3540 161 QEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGSH 202 (202)
Q Consensus 161 ~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~~ 202 (202)
.....++++..||+.|++.++|+++...+..|.+|...||+.
T Consensus 385 ~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 385 DADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred chhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 234456899999999999999999999999999999999973
No 12
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.8e-33 Score=242.87 Aligned_cols=174 Identities=17% Similarity=0.268 Sum_probs=155.0
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
++++++|..|+..+||||||||+|.++..+...++++...++++.|+..|++.. .+|+||||||+|+.||++++
T Consensus 305 ~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~------~~V~vIaTTN~~~~Ld~all 378 (489)
T CHL00195 305 SRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKK------SPVFVVATANNIDLLPLEIL 378 (489)
T ss_pred HHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCC------CceEEEEecCChhhCCHHHh
Confidence 578999999999999999999999999876555566778899999999998632 56999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcccC--CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVVID--VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~--~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
| |||+.+++++|+.++|.+||+.++++.... .+.++..||..|+||||+||+++|.+|...|+.+..
T Consensus 379 R~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~--------- 449 (489)
T CHL00195 379 RKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR--------- 449 (489)
T ss_pred CCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC---------
Confidence 8 999999999999999999999999876433 478999999999999999999999999998875432
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHh
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKS--VTAHDLSKYDSWMNEF 199 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps--~s~~~~~~~~~~~~~~ 199 (202)
+++.+||..|+++++|+ ...+.+..+++|...-
T Consensus 450 ---------~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 450 ---------EFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred ---------CcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 79999999999999997 4678999999998753
No 13
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-33 Score=243.56 Aligned_cols=167 Identities=35% Similarity=0.653 Sum_probs=152.2
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
|+|+++|..|+..+||||||||+|++++.|+.. ..+...+++++||.+||++... .+|+||+|||+||.+|+|++
T Consensus 322 k~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~-~~~~~~r~~~~lL~~~d~~e~~----~~v~vi~aTN~p~~ld~a~l 396 (494)
T COG0464 322 KNIRELFEKARKLAPSIIFIDEIDSLASGRGPS-EDGSGRRVVGQLLTELDGIEKA----EGVLVIAATNRPDDLDPALL 396 (494)
T ss_pred HHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC-CchHHHHHHHHHHHHhcCCCcc----CceEEEecCCCccccCHhhc
Confidence 799999999999999999999999999999643 3333479999999999999987 77999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcc--cCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVV--IDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~--~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
| |||+.+++|+||.++|.+||+.+++... +..++++..++..|+||+|+||..+|++|.+.++++..
T Consensus 397 R~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~--------- 467 (494)
T COG0464 397 RPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR--------- 467 (494)
T ss_pred ccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc---------
Confidence 9 9999999999999999999999998443 45789999999999999999999999999999998864
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW 195 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~ 195 (202)
...+|++||..|+++++|+++ |++|
T Consensus 468 -------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 468 -------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred -------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 127999999999999999988 8887
No 14
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.3e-33 Score=219.15 Aligned_cols=162 Identities=25% Similarity=0.386 Sum_probs=145.3
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
|.|+++|..|+..+|||+||||+|+|+-.|.-..-.+....++|.||++|||+.++ .+|+.||+||+|+.||+|++
T Consensus 197 r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~en----eGVvtIaaTN~p~~LD~aiR 272 (368)
T COG1223 197 RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKEN----EGVVTIAATNRPELLDPAIR 272 (368)
T ss_pred HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccC----CceEEEeecCChhhcCHHHH
Confidence 67999999999999999999999999988865555566678999999999999986 89999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHH-HHHHHHHHHHHHHHhcCChhHHhhhh
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIAN-LARDAAMMSIRRKIMGQTPAQIKEIK 160 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~-l~~~A~~~a~~~~~~~~~~~~~~~~~ 160 (202)
+||...|+|.+|+.++|.+|++.+.+++++.-+.++..++.+|.|+||+||+. +.+.|.+.|+.+...
T Consensus 273 sRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e----------- 341 (368)
T COG1223 273 SRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDRE----------- 341 (368)
T ss_pred hhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchh-----------
Confidence 99999999999999999999999999999998999999999999999999975 556666777765442
Q ss_pred hccCCCCCcHHHHHHHHHHhCCCC
Q psy3540 161 QEDIDLPVTEKDFREAIARCRKSV 184 (202)
Q Consensus 161 ~~~~~~~it~~df~~Al~~~~Ps~ 184 (202)
.|+.+|++.|+++-++..
T Consensus 342 ------~v~~edie~al~k~r~~r 359 (368)
T COG1223 342 ------KVEREDIEKALKKERKRR 359 (368)
T ss_pred ------hhhHHHHHHHHHhhcccc
Confidence 689999999999877653
No 15
>KOG0728|consensus
Probab=100.00 E-value=5.8e-33 Score=217.76 Aligned_cols=168 Identities=29% Similarity=0.459 Sum_probs=151.0
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCC--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
|-+|++|-.|++++|||||+||||+|++.|..+ +.....+|..-+||+++||+... .++-||.+||+.+-+|||
T Consensus 227 rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat----knikvimatnridild~a 302 (404)
T KOG0728|consen 227 RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT----KNIKVIMATNRIDILDPA 302 (404)
T ss_pred HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc----cceEEEEeccccccccHh
Confidence 568999999999999999999999999988532 33345678888999999999987 889999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| |+|++|+||+|++++|.+||+.+-+++.+...+++..+|.+..|.||++++.+|.+|.+.|+++..
T Consensus 303 llrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr--------- 373 (404)
T KOG0728|consen 303 LLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR--------- 373 (404)
T ss_pred hcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh---------
Confidence 999 999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHH
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKSVTAHDLS 190 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~ 190 (202)
..+|++||+-|+.++-...+..++.
T Consensus 374 --------vhvtqedfemav~kvm~k~~e~nms 398 (404)
T KOG0728|consen 374 --------VHVTQEDFEMAVAKVMQKDSEKNMS 398 (404)
T ss_pred --------ccccHHHHHHHHHHHHhccccccch
Confidence 2799999999999986655544443
No 16
>KOG0735|consensus
Probab=100.00 E-value=1.7e-32 Score=239.08 Aligned_cols=183 Identities=26% Similarity=0.419 Sum_probs=155.2
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
.|+|.+|..|+..+|||+||||+|+++++|+. ...+...|++|+||++|||..+- .+|+|+|+|++|+.|||||+
T Consensus 747 q~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh-DsTGVTDRVVNQlLTelDG~Egl----~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 747 QNVRDLFERAQSAKPCILFFDEFDSIAPKRGH-DSTGVTDRVVNQLLTELDGAEGL----DGVYILAATSRPDLIDPALL 821 (952)
T ss_pred HHHHHHHHHhhccCCeEEEeccccccCcccCC-CCCCchHHHHHHHHHhhcccccc----ceEEEEEecCCccccCHhhc
Confidence 58999999999999999999999999999954 55678899999999999999997 89999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 159 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~ 159 (202)
| |+|+.++.++|++.+|.+||+.+......+.++|++.+|.+|+||||+||..|+..|.+.|+++.......
T Consensus 822 RpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~~------ 895 (952)
T KOG0735|consen 822 RPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKREDE------ 895 (952)
T ss_pred CCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcCc------
Confidence 9 99999999999999999999999998888999999999999999999999999999999999987653321
Q ss_pred hhccCCCCCcHHHHHHHHH--HhCCCCCHHHHHHHHHHHH
Q psy3540 160 KQEDIDLPVTEKDFREAIA--RCRKSVTAHDLSKYDSWMN 197 (202)
Q Consensus 160 ~~~~~~~~it~~df~~Al~--~~~Ps~s~~~~~~~~~~~~ 197 (202)
+...+.++...+..... +.+||.+.-+-..+.+...
T Consensus 896 --~~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~ 933 (952)
T KOG0735|consen 896 --EGVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYS 933 (952)
T ss_pred --cccCCccchhhhhhhhhccCCCccccccchhhhhhHHH
Confidence 11222355555554444 5667776655554444433
No 17
>KOG0652|consensus
Probab=100.00 E-value=7.6e-33 Score=218.24 Aligned_cols=160 Identities=27% Similarity=0.439 Sum_probs=146.3
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC--cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
|-+|..|..|++.+|+||||||+|+|+.+|-... .....+|..-+||+++||+.+. ..|-|||+||+.+-+|||
T Consensus 251 kLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~----~~vKviAATNRvDiLDPA 326 (424)
T KOG0652|consen 251 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD----DRVKVIAATNRVDILDPA 326 (424)
T ss_pred HHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc----cceEEEeecccccccCHH
Confidence 4589999999999999999999999999884322 2234567788999999999987 889999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| |+|++|+||.|+++.|..|++.+.+++...+++++++||+.|++|+|++++++|-+|.+.|+++...
T Consensus 327 LlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at-------- 398 (424)
T KOG0652|consen 327 LLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT-------- 398 (424)
T ss_pred HhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc--------
Confidence 999 9999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRK 182 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~P 182 (202)
.|+.+||.+++.+++.
T Consensus 399 ---------ev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 399 ---------EVTHEDFMEGILEVQA 414 (424)
T ss_pred ---------cccHHHHHHHHHHHHH
Confidence 6999999999998864
No 18
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=4.6e-31 Score=224.54 Aligned_cols=161 Identities=25% Similarity=0.402 Sum_probs=144.8
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC--cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
+.++++|..|+..+||||||||+|.++++|.... ......+++.+|+++||++... .+++||+|||+|+.||++
T Consensus 225 ~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~----~~v~VI~aTN~~d~LDpA 300 (398)
T PTZ00454 225 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT----TNVKVIMATNRADTLDPA 300 (398)
T ss_pred HHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC----CCEEEEEecCCchhCCHH
Confidence 5689999999999999999999999998874322 2234568889999999998775 679999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| |||++|+|++|+.++|..||+.++.++.+..++++..+|..|+||||+||+++|++|.+.|+++...
T Consensus 301 llR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~-------- 372 (398)
T PTZ00454 301 LLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRY-------- 372 (398)
T ss_pred HcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCC--------
Confidence 999 9999999999999999999999999999889999999999999999999999999999999987532
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKS 183 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps 183 (202)
.|+.+||++|++++...
T Consensus 373 ---------~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 373 ---------VILPKDFEKGYKTVVRK 389 (398)
T ss_pred ---------ccCHHHHHHHHHHHHhc
Confidence 79999999999998665
No 19
>KOG0726|consensus
Probab=99.97 E-value=9.3e-32 Score=214.65 Aligned_cols=159 Identities=24% Similarity=0.423 Sum_probs=144.3
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCC--CCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~--~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
|-+|++|+.|..++|||+||||||+++.+|=. .+.....+|..-+||+++||+.+. ..|-||.+||+.++||||
T Consensus 265 klvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr----gDvKvimATnrie~LDPa 340 (440)
T KOG0726|consen 265 KLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR----GDVKVIMATNRIETLDPA 340 (440)
T ss_pred HHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc----CCeEEEEecccccccCHh
Confidence 45899999999999999999999999998832 222234556677999999999987 779999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
|+| |+|++|+||+||...+..||..+..++.+..+++++.+...-+.+||+||+++|.+|.+.|+++...
T Consensus 341 LiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm-------- 412 (440)
T KOG0726|consen 341 LIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM-------- 412 (440)
T ss_pred hcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh--------
Confidence 999 9999999999999999999999999999999999999999999999999999999999999997764
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
.++.+||.+|.+.+-
T Consensus 413 ---------~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 413 ---------KVTMEDFKKAKEKVL 427 (440)
T ss_pred ---------hccHHHHHHHHHHHH
Confidence 699999999998864
No 20
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-31 Score=233.35 Aligned_cols=159 Identities=30% Similarity=0.520 Sum_probs=146.4
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCC--CCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~--~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
+.+|++|.+|+..+||||||||+|+++..|+. ++.+..-...+|+||.+|||+.++ ..|+|+++||+|+-+|+|
T Consensus 229 sRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~----~gviviaaTNRpdVlD~A 304 (596)
T COG0465 229 SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN----EGVIVIAATNRPDVLDPA 304 (596)
T ss_pred HHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC----CceEEEecCCCcccchHh
Confidence 46899999999999999999999999999964 334445557999999999999976 889999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
|+| |||+.|.+++||...|++|++.|+++.++++++|+..+|+.|+||+|+||.+++.+|++.|.++...
T Consensus 305 LlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~-------- 376 (596)
T COG0465 305 LLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK-------- 376 (596)
T ss_pred hcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe--------
Confidence 999 9999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
.|++.||++|+.++-
T Consensus 377 ---------~i~~~~i~ea~drv~ 391 (596)
T COG0465 377 ---------EITMRDIEEAIDRVI 391 (596)
T ss_pred ---------eEeccchHHHHHHHh
Confidence 799999999999863
No 21
>KOG0730|consensus
Probab=99.97 E-value=6.5e-31 Score=228.08 Aligned_cols=170 Identities=31% Similarity=0.544 Sum_probs=154.5
Q ss_pred hHHHHHHHHhhhCC-CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHH
Q psy3540 2 REVQRTNVPSNSYR-VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAF 80 (202)
Q Consensus 2 k~i~~~F~~A~~~~-P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al 80 (202)
+++|++|+.|..++ |+||||||+|+|+++|..... ..+|++++|++.||++... .+++|+++||+|++||+++
T Consensus 264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~~----~~vivl~atnrp~sld~al 337 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKPD----AKVIVLAATNRPDSLDPAL 337 (693)
T ss_pred HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcCc----CcEEEEEecCCccccChhh
Confidence 58999999999999 999999999999999965333 6789999999999999965 7899999999999999999
Q ss_pred Hh-cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhh
Q psy3540 81 RR-RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 159 (202)
Q Consensus 81 ~r-rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~ 159 (202)
+| |||+.++++.|+..+|.+|++.+++++++.+++++..+|..|+||+|+||..+|.+|.+.+.++
T Consensus 338 RRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~------------- 404 (693)
T KOG0730|consen 338 RRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR------------- 404 (693)
T ss_pred hcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-------------
Confidence 99 9999999999999999999999999999888899999999999999999999999999999887
Q ss_pred hhccCCCCCcHHHHHHHHHHhC-----------CCCCHHHHHHHHHHHHHh
Q psy3540 160 KQEDIDLPVTEKDFREAIARCR-----------KSVTAHDLSKYDSWMNEF 199 (202)
Q Consensus 160 ~~~~~~~~it~~df~~Al~~~~-----------Ps~s~~~~~~~~~~~~~~ 199 (202)
+.++|..|+..++ |.++|++|..+++.+.+.
T Consensus 405 ---------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 405 ---------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred ---------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence 3467777777776 457899999888887764
No 22
>KOG0731|consensus
Probab=99.97 E-value=9.3e-31 Score=232.44 Aligned_cols=158 Identities=32% Similarity=0.542 Sum_probs=144.8
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccC---CCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRG---SDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~---~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++|.+|..||.++||||||||||+++..|+ ..+.+......+|+||.+|||+.+. ..|+|+|+||+|+-||+|
T Consensus 391 rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~----~~vi~~a~tnr~d~ld~a 466 (774)
T KOG0731|consen 391 RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS----KGVIVLAATNRPDILDPA 466 (774)
T ss_pred HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC----CcEEEEeccCCccccCHH
Confidence 689999999999999999999999999994 2344555678899999999999886 889999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHH
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQI 156 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~ 156 (202)
++| |||+.|++++|+..+|.+||+.|+++..++ .++++..||.+|+||+|+||.++|.+|+..|.++...
T Consensus 467 llrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~------- 539 (774)
T KOG0731|consen 467 LLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLR------- 539 (774)
T ss_pred hcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccC-------
Confidence 999 999999999999999999999999988885 7889999999999999999999999999999988653
Q ss_pred hhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 157 KEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 157 ~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
.|+..||+.|++++.
T Consensus 540 ----------~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 540 ----------EIGTKDLEYAIERVI 554 (774)
T ss_pred ----------ccchhhHHHHHHHHh
Confidence 799999999999654
No 23
>KOG0727|consensus
Probab=99.97 E-value=4.2e-30 Score=201.93 Aligned_cols=160 Identities=26% Similarity=0.424 Sum_probs=146.5
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCC--CCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~--~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
|-+|++|..|++++|+||||||+|+|+.+|=. .+.....+|++-+||++|||+... .+|-||.+||+.+.+|||
T Consensus 235 rmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~----~nvkvimatnradtldpa 310 (408)
T KOG0727|consen 235 RMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT----TNVKVIMATNRADTLDPA 310 (408)
T ss_pred HHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc----cceEEEEecCcccccCHh
Confidence 56899999999999999999999999988832 233445679999999999999987 789999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| |+|++|+||+||.-+++-+|.....++.++.++|++.+..+-+..||+||.++|++|.+.|+++...
T Consensus 311 llrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nry-------- 382 (408)
T KOG0727|consen 311 LLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRY-------- 382 (408)
T ss_pred hcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcce--------
Confidence 999 9999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRK 182 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~P 182 (202)
.|.+.||++|.+....
T Consensus 383 ---------vvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 383 ---------VVLQKDFEKAYKTVVK 398 (408)
T ss_pred ---------eeeHHHHHHHHHhhcC
Confidence 6899999999987643
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=1e-29 Score=216.67 Aligned_cols=165 Identities=28% Similarity=0.448 Sum_probs=146.0
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCc--chHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSE--HEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
+.++.+|..|+..+||||||||+|.++++|+..+. .....+.+..|+.+++++... .+++||+|||+++.+|++
T Consensus 211 ~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~----~~v~VI~aTn~~~~ld~a 286 (389)
T PRK03992 211 RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR----GNVKIIAATNRIDILDPA 286 (389)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC----CCEEEEEecCChhhCCHH
Confidence 46789999999999999999999999988754332 234466778899999998765 679999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| ||+..|+||+|+.++|.+||+.++++..+..++++..+|..|+||+|+||+++|++|.+.|+++..
T Consensus 287 llRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~--------- 357 (389)
T PRK03992 287 ILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR--------- 357 (389)
T ss_pred HcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC---------
Confidence 998 999999999999999999999999999888889999999999999999999999999999987632
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCCCCHH
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKSVTAH 187 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps~s~~ 187 (202)
..|+.+||.+|+..++|+...+
T Consensus 358 --------~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 358 --------TEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------CCcCHHHHHHHHHHHhcccccc
Confidence 1699999999999999975543
No 25
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=3e-29 Score=225.28 Aligned_cols=161 Identities=29% Similarity=0.477 Sum_probs=145.0
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCC--CCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~--~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++++.+|..|+..+||||||||+|.++..|+. ++.+....+++++||.+||++.+. .+|+||+|||+|+.||++
T Consensus 231 ~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~----~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 231 SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN----EGIIVIAATNRPDVLDPA 306 (644)
T ss_pred HHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC----CCeeEEEecCChhhcCHH
Confidence 46889999999999999999999999988864 233445567999999999999875 789999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| |||+.+++++|+.++|.+||+.++++.++..++++..+|..|.||||+||.++|++|+..|+++..
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~--------- 377 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK--------- 377 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC---------
Confidence 999 999999999999999999999999999988899999999999999999999999999999886532
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKS 183 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps 183 (202)
..|+.+||++|+..+.+.
T Consensus 378 --------~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 378 --------RVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred --------CcccHHHHHHHHHHHhcc
Confidence 269999999999988664
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=4.8e-29 Score=218.69 Aligned_cols=160 Identities=28% Similarity=0.499 Sum_probs=142.5
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCC--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++++.+|+.|+..+||||||||+|.++.+++.+ +.+....+++++||.+||++.+. .+|+||+|||+|+.||++
T Consensus 134 ~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~----~~v~vI~aTn~~~~ld~a 209 (495)
T TIGR01241 134 SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN----TGVIVIAATNRPDVLDPA 209 (495)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC----CCeEEEEecCChhhcCHH
Confidence 578999999999999999999999999887542 22344568899999999999875 679999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| |||+.|++++|+.++|.+||+.++++.++..++++..+|..|+||||+||+++|++|...+.++..
T Consensus 210 l~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~--------- 280 (495)
T TIGR01241 210 LLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK--------- 280 (495)
T ss_pred HhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC---------
Confidence 999 999999999999999999999999988777789999999999999999999999999888876532
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRK 182 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~P 182 (202)
.+|+.+||+.|+..+.+
T Consensus 281 --------~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 281 --------TEITMNDIEEAIDRVIA 297 (495)
T ss_pred --------CCCCHHHHHHHHHHHhc
Confidence 27999999999998754
No 27
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=7.3e-29 Score=212.61 Aligned_cols=160 Identities=24% Similarity=0.415 Sum_probs=142.4
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC--cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
+.++.+|..|+..+||||||||+|.++.+|.... ......+.+.+||+++|++... .++.||+|||+++.+|++
T Consensus 263 ~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~----~~V~VI~ATNr~d~LDpa 338 (438)
T PTZ00361 263 KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR----GDVKVIMATNRIESLDPA 338 (438)
T ss_pred HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc----CCeEEEEecCChHHhhHH
Confidence 4588999999999999999999999998875322 2233467788999999998765 679999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| ||+++|+|++|+.++|.+||+.++.++.+..++++..++..|+||||+||+++|++|.+.|+++...
T Consensus 339 LlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~-------- 410 (438)
T PTZ00361 339 LIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRM-------- 410 (438)
T ss_pred hccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCC--------
Confidence 998 9999999999999999999999999998888999999999999999999999999999999987532
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRK 182 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~P 182 (202)
.|+.+||.+|+.++..
T Consensus 411 ---------~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 411 ---------KVTQADFRKAKEKVLY 426 (438)
T ss_pred ---------ccCHHHHHHHHHHHHh
Confidence 6999999999999743
No 28
>KOG0741|consensus
Probab=99.96 E-value=1.9e-29 Score=214.34 Aligned_cols=186 Identities=24% Similarity=0.424 Sum_probs=158.0
Q ss_pred hHHHHHHHHhhhC--------CCeEEEEccccccccccCCC-CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC
Q psy3540 2 REVQRTNVPSNSY--------RVSTIFIDEVDSLCSMRGSD-SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH 72 (202)
Q Consensus 2 k~i~~~F~~A~~~--------~P~Ii~iDeiD~l~~~r~~~-~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~ 72 (202)
.|||++|+-|.+- .=-||+|||||+||.+|++. +..+....++|+||..|||+..- .+|+|||.||+
T Consensus 303 ~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL----NNILVIGMTNR 378 (744)
T KOG0741|consen 303 ENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL----NNILVIGMTNR 378 (744)
T ss_pred HHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh----hcEEEEeccCc
Confidence 6899999999532 24599999999999999864 44677889999999999999987 88999999999
Q ss_pred CCCccHHHHh--cccceeeecCCCHHHHHHHHHHHhcCc----ccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy3540 73 PWDIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGV----VIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRR 146 (202)
Q Consensus 73 ~~~ld~al~r--rf~~~i~i~~P~~~~R~~il~~~l~~~----~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~ 146 (202)
++.||+||+| ||+..+++.+||+..|.+||+.+++++ .++.++|+.+||..|..|||++|+.||+.|.-.|+.|
T Consensus 379 ~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR 458 (744)
T KOG0741|consen 379 KDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNR 458 (744)
T ss_pred hhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999765 3568999999999999999999999999999999999
Q ss_pred HHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhCCCC--CHHHHHHHH
Q psy3540 147 KIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSV--TAHDLSKYD 193 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~--s~~~~~~~~ 193 (202)
......... ..........|+.+||..||..++|++ +.+++.++.
T Consensus 459 ~vk~~~~~~--~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 459 HVKAGGKVE--VDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred hhccCccee--cCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 876542111 111223356899999999999999986 556666654
No 29
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=1.2e-28 Score=232.97 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=131.2
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh-
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR- 82 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r- 82 (202)
|+.+|+.|++.+||||||||||+|+.+.. ....+++|+++||+.... ....+|+||||||+|+.|||||+|
T Consensus 1721 Ir~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~-~s~~~VIVIAATNRPD~LDPALLRP 1792 (2281)
T CHL00206 1721 ITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCER-CSTRNILVIASTHIPQKVDPALIAP 1792 (2281)
T ss_pred HHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhcccccc-CCCCCEEEEEeCCCcccCCHhHcCC
Confidence 88999999999999999999999987521 112479999999987532 123679999999999999999999
Q ss_pred -cccceeeecCCCHHHHHHHHHHHh--cCcccCCc-ccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhh
Q psy3540 83 -RFEKRVYIPLPNEWARYQLLTLCL--EGVVIDVN-LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKE 158 (202)
Q Consensus 83 -rf~~~i~i~~P~~~~R~~il~~~l--~~~~~~~~-~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~ 158 (202)
|||+.|+|+.|+..+|.+++..++ ++..+..+ +++..+|..|+|||||||++||++|++.|+++...
T Consensus 1793 GRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks--------- 1863 (2281)
T CHL00206 1793 NKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKS--------- 1863 (2281)
T ss_pred CCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------
Confidence 999999999999999999998654 45555533 68999999999999999999999999999988543
Q ss_pred hhhccCCCCCcHHHHHHHHHHhCC
Q psy3540 159 IKQEDIDLPVTEKDFREAIARCRK 182 (202)
Q Consensus 159 ~~~~~~~~~it~~df~~Al~~~~P 182 (202)
.|+.++|..|+.++.+
T Consensus 1864 --------~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1864 --------IIDTNTIRSALHRQTW 1879 (2281)
T ss_pred --------ccCHHHHHHHHHHHHh
Confidence 6899999999998753
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.2e-27 Score=213.56 Aligned_cols=158 Identities=28% Similarity=0.486 Sum_probs=141.3
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCC--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
+.++.+|..|+..+||||||||+|.++..|+.+ +.+.....++++||.+||++... .+|+||+|||+|+.+|++
T Consensus 262 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~----~~ViVIaaTN~~~~LD~A 337 (638)
T CHL00176 262 ARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN----KGVIVIAATNRVDILDAA 337 (638)
T ss_pred HHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC----CCeeEEEecCchHhhhhh
Confidence 468899999999999999999999999877542 23445567899999999998775 789999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| |||+.+++++|+.++|.+||+.++++..+..++++..+|..|.||+|+||+++|++|+..+.++..
T Consensus 338 LlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~--------- 408 (638)
T CHL00176 338 LLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK--------- 408 (638)
T ss_pred hhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC---------
Confidence 999 999999999999999999999999987777889999999999999999999999999988876643
Q ss_pred hhhhccCCCCCcHHHHHHHHHHh
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~ 180 (202)
..|+.+||+.|+.++
T Consensus 409 --------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 --------ATITMKEIDTAIDRV 423 (638)
T ss_pred --------CCcCHHHHHHHHHHH
Confidence 269999999999987
No 31
>KOG0729|consensus
Probab=99.95 E-value=3.2e-28 Score=192.62 Aligned_cols=159 Identities=27% Similarity=0.453 Sum_probs=144.6
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCC--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
|-+|++|+.|+....|||||||||++++.|=.+ +.....+|..-+|++++||+... .++-|+.+||+|+.||||
T Consensus 257 rmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr----gnikvlmatnrpdtldpa 332 (435)
T KOG0729|consen 257 RMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR----GNIKVLMATNRPDTLDPA 332 (435)
T ss_pred HHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC----CCeEEEeecCCCCCcCHh
Confidence 568999999999999999999999999988432 23344567788899999999987 889999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
|+| |+|++++|.+|+.+.|..||+.+.+.+....++-|+-||..+..-+|++|..+|.+|.+.|++....
T Consensus 333 llrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk-------- 404 (435)
T KOG0729|consen 333 LLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRK-------- 404 (435)
T ss_pred hcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhh--------
Confidence 999 9999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
..|..||..|+.++.
T Consensus 405 ---------~atekdfl~av~kvv 419 (435)
T KOG0729|consen 405 ---------VATEKDFLDAVNKVV 419 (435)
T ss_pred ---------hhhHHHHHHHHHHHH
Confidence 689999999999874
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=1.4e-26 Score=196.08 Aligned_cols=158 Identities=30% Similarity=0.481 Sum_probs=138.9
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCc--chHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSE--HEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
+.++.+|..|+..+|+||||||+|.++..+..... .....+.+..++.+++++... .+++||+|||+++.+|++
T Consensus 202 ~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~----~~v~vI~ttn~~~~ld~a 277 (364)
T TIGR01242 202 RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR----GNVKVIAATNRPDILDPA 277 (364)
T ss_pred HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC----CCEEEEEecCChhhCChh
Confidence 45788999999999999999999999987753221 233456778899999988664 679999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| ||++.|+|+.|+.++|.+||+.++.+..+..++++..+|..|+||+|+||+++|++|.+.|+++..
T Consensus 278 l~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~--------- 348 (364)
T TIGR01242 278 LLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREER--------- 348 (364)
T ss_pred hcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC---------
Confidence 998 999999999999999999999999988888789999999999999999999999999999987743
Q ss_pred hhhhccCCCCCcHHHHHHHHHHh
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~ 180 (202)
..|+.+||.+|+.++
T Consensus 349 --------~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 349 --------DYVTMDDFIKAVEKV 363 (364)
T ss_pred --------CccCHHHHHHHHHHh
Confidence 179999999999875
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.94 E-value=1.5e-25 Score=194.79 Aligned_cols=162 Identities=22% Similarity=0.325 Sum_probs=129.8
Q ss_pred hHHHHHHHHhhhC----CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 2 REVQRTNVPSNSY----RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 2 k~i~~~F~~A~~~----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
++++.+|+.|+.. .||||||||+|.++.+|+.+..+....+++++||++||++... .+|+||+|||+++.||
T Consensus 272 ~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~----~~ViVI~ATN~~d~LD 347 (512)
T TIGR03689 272 RQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL----DNVIVIGASNREDMID 347 (512)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC----CceEEEeccCChhhCC
Confidence 4688999999875 6999999999999998876555566678999999999999875 6799999999999999
Q ss_pred HHHHh--cccceeeecCCCHHHHHHHHHHHhcC-cccC---------CcccHHHHHHH----------------------
Q psy3540 78 EAFRR--RFEKRVYIPLPNEWARYQLLTLCLEG-VVID---------VNLDFHKISKM---------------------- 123 (202)
Q Consensus 78 ~al~r--rf~~~i~i~~P~~~~R~~il~~~l~~-~~~~---------~~~~~~~la~~---------------------- 123 (202)
||++| |||.+|+|++|+.++|.+||+.++.. .++. ...++..+++.
T Consensus 348 pALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g 427 (512)
T TIGR03689 348 PAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANG 427 (512)
T ss_pred HhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCC
Confidence 99999 99999999999999999999999864 3331 11223333322
Q ss_pred -------ccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHh
Q psy3540 124 -------LEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 124 -------t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 180 (202)
++.+||++|+++|.+|...|+.+...+. ...|+.+|+..|+..-
T Consensus 428 ~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~-------------~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 428 STEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG-------------QVGLRIEHLLAAVLDE 478 (512)
T ss_pred ceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC-------------CcCcCHHHHHHHHHHh
Confidence 4567788888888888888877765322 2379999999999873
No 34
>KOG0732|consensus
Probab=99.93 E-value=4.7e-26 Score=207.45 Aligned_cols=179 Identities=28% Similarity=0.432 Sum_probs=147.1
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
|+++.+|+.|+.++|+|||+||||-|++.|++.. ......+++.||..|||+.+. +.|+||||||+|+.+|||++
T Consensus 350 RqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-Eqih~SIvSTLLaLmdGldsR----gqVvvigATnRpda~dpaLR 424 (1080)
T KOG0732|consen 350 RQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-EQIHASIVSTLLALMDGLDSR----GQVVVIGATNRPDAIDPALR 424 (1080)
T ss_pred HHHHHHHHHHhccCceEEeccccccccccccchH-HHhhhhHHHHHHHhccCCCCC----CceEEEcccCCccccchhhc
Confidence 6899999999999999999999999999995432 233457899999999999997 88999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKE 158 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~ 158 (202)
| |||++++|++|+.+.|..|+..+..+.... +..-+..||+.|.||.|+||+.+|.+|++.++++......... ..
T Consensus 425 RPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~-~k 503 (1080)
T KOG0732|consen 425 RPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSS-DK 503 (1080)
T ss_pred CCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeeccc-cc
Confidence 9 999999999999999999999999776533 2335688999999999999999999999999988643221110 00
Q ss_pred hhhccCCCCCcHHHHHHHHHHhCCCCCH
Q psy3540 159 IKQEDIDLPVTEKDFREAIARCRKSVTA 186 (202)
Q Consensus 159 ~~~~~~~~~it~~df~~Al~~~~Ps~s~ 186 (202)
.........|...||..|+.+..|+-.+
T Consensus 504 l~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 504 LLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred ccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 1111222348899999999999987654
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=1e-24 Score=199.27 Aligned_cols=178 Identities=32% Similarity=0.516 Sum_probs=149.9
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
++++.+|+.|...+|+||||||+|.++++++. ...+...++.++|+..|+++... ..++||++||.|+.+|++++
T Consensus 258 ~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~-~~~~~~~~~~~~Ll~~ld~l~~~----~~vivI~atn~~~~ld~al~ 332 (733)
T TIGR01243 258 ERLREIFKEAEENAPSIIFIDEIDAIAPKREE-VTGEVEKRVVAQLLTLMDGLKGR----GRVIVIGATNRPDALDPALR 332 (733)
T ss_pred HHHHHHHHHHHhcCCcEEEeehhhhhcccccC-CcchHHHHHHHHHHHHhhccccC----CCEEEEeecCChhhcCHHHh
Confidence 46899999999999999999999999988754 23345578999999999999775 67999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChh-HHhh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPA-QIKE 158 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~-~~~~ 158 (202)
| ||+..+++++|+.++|.+||+.++.+..+..++++..+++.|+||+++||..+|+.|.+.++++........ ....
T Consensus 333 r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~ 412 (733)
T TIGR01243 333 RPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEE 412 (733)
T ss_pred CchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 8 999999999999999999999999998888889999999999999999999999999999998865421110 0000
Q ss_pred hh-hccCCCCCcHHHHHHHHHHhCCCC
Q psy3540 159 IK-QEDIDLPVTEKDFREAIARCRKSV 184 (202)
Q Consensus 159 ~~-~~~~~~~it~~df~~Al~~~~Ps~ 184 (202)
+. .......++.+||..|++.++|+.
T Consensus 413 i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 413 IPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccchhcccccccHHHHHHHHhhccccc
Confidence 11 111234689999999999999875
No 36
>KOG0651|consensus
Probab=99.93 E-value=3.5e-26 Score=183.85 Aligned_cols=159 Identities=30% Similarity=0.464 Sum_probs=142.8
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC--cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
|-||+-|..|+++.|||||+||||++++.+.+.+ .....++.+-.|+++||++... .+|-+|.|||+|+.|||+
T Consensus 212 RlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l----~rVk~ImatNrpdtLdpa 287 (388)
T KOG0651|consen 212 RLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL----HRVKTIMATNRPDTLDPA 287 (388)
T ss_pred HHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc----ccccEEEecCCccccchh
Confidence 5689999999999999999999999999885432 2345567888899999999887 889999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
|+| |.|+.+++|+|+...|..|++.+...+.....+|.+.+.+.++||.|+|+.+.|++|.+.+++....
T Consensus 288 LlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~-------- 359 (388)
T KOG0651|consen 288 LLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERD-------- 359 (388)
T ss_pred hcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhH--------
Confidence 999 9999999999999999999999999888888999999999999999999999999999999876543
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
.+-++||.+++.++.
T Consensus 360 ---------~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 360 ---------EVLHEDFMKLVRKQA 374 (388)
T ss_pred ---------HHhHHHHHHHHHHHH
Confidence 577899999998864
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.90 E-value=7.6e-23 Score=169.66 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=117.0
Q ss_pred hHHHHHHHHhhhC-----CCeEEEEccccccccccCCCCcchHHHHH-HHHHHHHHhCCCC--------CCCCCceEEEE
Q psy3540 2 REVQRTNVPSNSY-----RVSTIFIDEVDSLCSMRGSDSEHEASRRF-KAELLIQMDGLNS--------SLYEDKIIMIL 67 (202)
Q Consensus 2 k~i~~~F~~A~~~-----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~-~~~ll~~ld~~~~--------~~~~~~~v~vi 67 (202)
|+||++|..|+.. +||||||||||++++.|++ .+.+...++ ..+|+++||+... ......+|+||
T Consensus 194 k~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~-~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VI 272 (413)
T PLN00020 194 KLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGT-TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPII 272 (413)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCC-CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEE
Confidence 7899999999864 6999999999999999864 334444455 4899999997421 00134779999
Q ss_pred EecCCCCCccHHHHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccC----CCHHHHHHHHHHHHH
Q psy3540 68 AATNHPWDIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEG----YTGSDIANLARDAAM 141 (202)
Q Consensus 68 atTn~~~~ld~al~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g----~s~~dl~~l~~~A~~ 141 (202)
+|||+|+.|||+|+| |||+.+ .+|+.++|.+||+.++++..++ ..++..|+..++| |.|+--..+..++..
T Consensus 273 aTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~ 349 (413)
T PLN00020 273 VTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVR 349 (413)
T ss_pred EeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHH
Confidence 999999999999999 999975 5899999999999999988776 6899999999988 788888888888877
Q ss_pred HHHHHH
Q psy3540 142 MSIRRK 147 (202)
Q Consensus 142 ~a~~~~ 147 (202)
.-+.+.
T Consensus 350 ~~i~~~ 355 (413)
T PLN00020 350 KWIAEV 355 (413)
T ss_pred HHHHHh
Confidence 776654
No 38
>KOG0736|consensus
Probab=99.82 E-value=2.1e-19 Score=158.85 Aligned_cols=189 Identities=15% Similarity=0.242 Sum_probs=148.9
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHh--CCCCCCCCCceEEEEEecCCCCCccHHH
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD--GLNSSLYEDKIIMILAATNHPWDIDEAF 80 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld--~~~~~~~~~~~v~viatTn~~~~ld~al 80 (202)
.+..+|..|+.++|+|||+-++|.+...+.+ +...++...+-.++. .... +..+++||++|+..+.|++.+
T Consensus 478 kl~~~f~~a~~~~pavifl~~~dvl~id~dg----ged~rl~~~i~~~ls~e~~~~---~~~~~ivv~t~~s~~~lp~~i 550 (953)
T KOG0736|consen 478 KLQAIFSRARRCSPAVLFLRNLDVLGIDQDG----GEDARLLKVIRHLLSNEDFKF---SCPPVIVVATTSSIEDLPADI 550 (953)
T ss_pred HHHHHHHHHhhcCceEEEEeccceeeecCCC----chhHHHHHHHHHHHhcccccC---CCCceEEEEeccccccCCHHH
Confidence 4678999999999999999999999865432 333444444433333 3332 237899999999999999999
Q ss_pred HhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhh-
Q psy3540 81 RRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI- 159 (202)
Q Consensus 81 ~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~- 159 (202)
++.|-++|.++.|++++|.+||+.|+....+..++.+..+|.+|.||+.+|+.+++..+...+..+......-+.....
T Consensus 551 ~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~ 630 (953)
T KOG0736|consen 551 QSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEED 630 (953)
T ss_pred HHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcc
Confidence 9999999999999999999999999999999999999999999999999999999999866666555433211111111
Q ss_pred --hhccCCCCCcHHHHHHHHHHhC------------CCCCHHHHHHHHHHHHH
Q psy3540 160 --KQEDIDLPVTEKDFREAIARCR------------KSVTAHDLSKYDSWMNE 198 (202)
Q Consensus 160 --~~~~~~~~it~~df~~Al~~~~------------Ps~s~~~~~~~~~~~~~ 198 (202)
........++++||.+|+.+++ |.|+|+|++.+++.+.+
T Consensus 631 ~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~e 683 (953)
T KOG0736|consen 631 EGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTE 683 (953)
T ss_pred ccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHH
Confidence 1122246899999999999765 89999999999998865
No 39
>KOG0735|consensus
Probab=99.80 E-value=7.5e-19 Score=154.30 Aligned_cols=167 Identities=17% Similarity=0.208 Sum_probs=133.2
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCC-CCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGS-DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAF 80 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~-~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al 80 (202)
|-++.+|..|.+++||||++|++|.|++..+. +++.+.....++.+++++-..... .+..+.|||+.+....++|-|
T Consensus 481 k~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~--~~~~ia~Iat~qe~qtl~~~L 558 (952)
T KOG0735|consen 481 KFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLK--RNRKIAVIATGQELQTLNPLL 558 (952)
T ss_pred HHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHc--cCcEEEEEEechhhhhcChhh
Confidence 45789999999999999999999999984432 333444455556666554433332 346689999999999999999
Q ss_pred Hh--cccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 81 RR--RFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 81 ~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
.. +|+.++.+|.|+..+|.+||+..+++...+ ..-|++-++.+|+||.+.||..+|.+|.+.|+....+...
T Consensus 559 ~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~----- 633 (952)
T KOG0735|consen 559 VSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGP----- 633 (952)
T ss_pred cCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCc-----
Confidence 97 999999999999999999999999765432 2335566999999999999999999999999965543222
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKS 183 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps 183 (202)
..+|.++|.++|+.+.|.
T Consensus 634 --------klltke~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 634 --------KLLTKELFEKSLKDFVPL 651 (952)
T ss_pred --------ccchHHHHHHHHHhcChH
Confidence 269999999999999884
No 40
>KOG0742|consensus
Probab=99.74 E-value=4.1e-17 Score=136.14 Aligned_cols=131 Identities=29% Similarity=0.425 Sum_probs=108.3
Q ss_pred HHHHHHHHhhhCC-CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 3 EVQRTNVPSNSYR-VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 3 ~i~~~F~~A~~~~-P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
+|+++|.+|+... --++||||.|+++..|.....++..+..+|.||=--..- ...++++.+||+|..+|.|+-
T Consensus 430 kiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdq------SrdivLvlAtNrpgdlDsAV~ 503 (630)
T KOG0742|consen 430 KIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ------SRDIVLVLATNRPGDLDSAVN 503 (630)
T ss_pred HHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhccc------ccceEEEeccCCccchhHHHH
Confidence 6899999998755 467999999999999987777888888889888433222 256899999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC------------------------C---cccHHHHHHHccCCCHHHHHH
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID------------------------V---NLDFHKISKMLEGYTGSDIAN 134 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~------------------------~---~~~~~~la~~t~g~s~~dl~~ 134 (202)
.|||.+++||+|.+++|..+|..|+.++... . +--+.+.|.+|+||||.+|..
T Consensus 504 DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiak 583 (630)
T KOG0742|consen 504 DRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAK 583 (630)
T ss_pred hhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHH
Confidence 9999999999999999999999999653211 0 112678999999999999999
Q ss_pred HHHHH
Q psy3540 135 LARDA 139 (202)
Q Consensus 135 l~~~A 139 (202)
|+..-
T Consensus 584 Lva~v 588 (630)
T KOG0742|consen 584 LVASV 588 (630)
T ss_pred HHHHH
Confidence 98643
No 41
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5.6e-16 Score=136.26 Aligned_cols=176 Identities=32% Similarity=0.469 Sum_probs=152.3
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
++++.+|..|+..+|+|+++|++|.+++.+.. .......++..+++..++++. . .. +++++.||.+..+|++++
T Consensus 63 ~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~-~---~~-v~~~~~~~~~~~~~~a~~ 136 (494)
T COG0464 63 LRLRELFEEAEKLAPSIIFIDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK-R---GQ-VIVIGATNRPDGLDPAKR 136 (494)
T ss_pred HHHHHHHHHHHHhCCCeEeechhhhcccCccc-cccchhhHHHHHHHHhccccc-C---Cc-eEEEeecCCccccChhHh
Confidence 57899999999999999999999999999976 556677899999999999999 3 25 999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 159 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~ 159 (202)
+ ||+..++++.|+...|.+|+......+....+.++..++..+.||+++|+..+|..+.+.++++....
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~--------- 207 (494)
T COG0464 137 RPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDL--------- 207 (494)
T ss_pred CccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhcc---------
Confidence 9 99999999999999999999999998888878999999999999999999999999999999886300
Q ss_pred hhccCCCCCcHHHHHHHHHHhCCC---------CCHHHHHHHHH
Q psy3540 160 KQEDIDLPVTEKDFREAIARCRKS---------VTAHDLSKYDS 194 (202)
Q Consensus 160 ~~~~~~~~it~~df~~Al~~~~Ps---------~s~~~~~~~~~ 194 (202)
......++.+||.++++.+.|+ +++.++..++.
T Consensus 208 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~ 249 (494)
T COG0464 208 --VGEYIGVTEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGLEE 249 (494)
T ss_pred --CcccccccHHHHHHHHHhcCcccccccCCCCcceehhhcHHH
Confidence 0112368999999999998664 56666644433
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.53 E-value=8.1e-14 Score=100.79 Aligned_cols=87 Identities=28% Similarity=0.454 Sum_probs=76.6
Q ss_pred hHHHHHHHHhhhCC-CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHH
Q psy3540 2 REVQRTNVPSNSYR-VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAF 80 (202)
Q Consensus 2 k~i~~~F~~A~~~~-P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al 80 (202)
+.++.+|..|+..+ ||||||||+|.+++.. ..........+.+.|+..++..... ..+++||+|||.++.+++++
T Consensus 44 ~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~~~~~~~~~~L~~~l~~~~~~---~~~~~vI~ttn~~~~i~~~l 119 (132)
T PF00004_consen 44 QKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSSSFEQRLLNQLLSLLDNPSSK---NSRVIVIATTNSPDKIDPAL 119 (132)
T ss_dssp HHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSSHHHHHHHHHHHHHHHTTTTT---SSSEEEEEEESSGGGSCHHH
T ss_pred cccccccccccccccceeeeeccchhccccc-ccccccccccccceeeecccccccc---cccceeEEeeCChhhCCHhH
Confidence 57899999999988 9999999999999887 4445667788999999999998874 46799999999999999999
Q ss_pred H-hcccceeeecC
Q psy3540 81 R-RRFEKRVYIPL 92 (202)
Q Consensus 81 ~-rrf~~~i~i~~ 92 (202)
+ +||++.+++|+
T Consensus 120 ~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 120 LRSRFDRRIEFPL 132 (132)
T ss_dssp HSTTSEEEEEE-S
T ss_pred HhCCCcEEEEcCC
Confidence 9 89999999975
No 43
>KOG0744|consensus
Probab=99.46 E-value=2.5e-13 Score=110.66 Aligned_cols=156 Identities=26% Similarity=0.327 Sum_probs=118.4
Q ss_pred hHHHHHHHHhhhC---CC--eEEEEccccccccccC---CCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC
Q psy3540 2 REVQRTNVPSNSY---RV--STIFIDEVDSLCSMRG---SDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP 73 (202)
Q Consensus 2 k~i~~~F~~A~~~---~P--~Ii~iDeiD~l~~~r~---~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~ 73 (202)
|.+..+|+.-.+. .- ..++|||+++|+..|. ++.+....-|++|+||++||.++.. ++|++++|+|-.
T Consensus 232 KlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~----~NvliL~TSNl~ 307 (423)
T KOG0744|consen 232 KLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY----PNVLILATSNLT 307 (423)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC----CCEEEEeccchH
Confidence 5667777766543 22 3467899999998883 3455667789999999999999987 899999999999
Q ss_pred CCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcc-----cC-------------CcccHHHHHHH-ccCCCHHHHHH
Q psy3540 74 WDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV-----ID-------------VNLDFHKISKM-LEGYTGSDIAN 134 (202)
Q Consensus 74 ~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~-----~~-------------~~~~~~~la~~-t~g~s~~dl~~ 134 (202)
++||.|+..|-|.+.+++.|+...|.+|++.++..+. .. .+.....++.. +.|+||+-|+.
T Consensus 308 ~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrk 387 (423)
T KOG0744|consen 308 DSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRK 387 (423)
T ss_pred HHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhh
Confidence 9999999999999999999999999999999985321 11 01122334444 48999999988
Q ss_pred HHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHh
Q psy3540 135 LARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 135 l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 180 (202)
|---|...-.+ .++++..+|..|+...
T Consensus 388 LP~Laha~y~~-------------------~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 388 LPLLAHAEYFR-------------------TFTVDLSNFLLALLEA 414 (423)
T ss_pred hhHHHHHhccC-------------------CCccChHHHHHHHHHH
Confidence 87655432221 1379999999988653
No 44
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.30 E-value=4e-11 Score=110.10 Aligned_cols=173 Identities=14% Similarity=0.186 Sum_probs=115.1
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC-----CCc
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP-----WDI 76 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~-----~~l 76 (202)
+.++++|+.|++..|+||||||+|.|++.+...+... ...+.|+..+. + +.+.+||+||.. ..+
T Consensus 261 ~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~---~~~~~L~~~l~----~----g~i~~IgaTt~~e~~~~~~~ 329 (731)
T TIGR02639 261 ERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSM---DASNLLKPALS----S----GKLRCIGSTTYEEYKNHFEK 329 (731)
T ss_pred HHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccH---HHHHHHHHHHh----C----CCeEEEEecCHHHHHHHhhh
Confidence 4688999999888999999999999987653222111 12233443332 1 568999999963 368
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHHHHHhcCcc----c-CCcccHHHHHHHccCCCHHHH-----HHHHHHHHHHHHHH
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV----I-DVNLDFHKISKMLEGYTGSDI-----ANLARDAAMMSIRR 146 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~----~-~~~~~~~~la~~t~g~s~~dl-----~~l~~~A~~~a~~~ 146 (202)
|+++.|||. .|+++.|+.+++..||+.+...+. + -.+..+..++..+..|-+... -.++++|+.....+
T Consensus 330 d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~ 408 (731)
T TIGR02639 330 DRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLR 408 (731)
T ss_pred hHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcC
Confidence 999999997 799999999999999998775421 1 134457778888877765431 34445443321111
Q ss_pred HHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC--C--CCCHHHHHHHHHHHHHh
Q psy3540 147 KIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR--K--SVTAHDLSKYDSWMNEF 199 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~--P--s~s~~~~~~~~~~~~~~ 199 (202)
... .....|+.+|+..++.... | .+++++..++....+.+
T Consensus 409 ~~~-------------~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l 452 (731)
T TIGR02639 409 PKA-------------KKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNL 452 (731)
T ss_pred ccc-------------ccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHH
Confidence 000 0123599999999999985 3 34566677776665554
No 45
>CHL00181 cbbX CbbX; Provisional
Probab=99.29 E-value=1.9e-10 Score=94.51 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=94.9
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-----CccH
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-----DIDE 78 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-----~ld~ 78 (202)
++.+|+.| .+.||||||+|.++..++ .......+...|+..|+... ..++||++++... .++|
T Consensus 114 ~~~~l~~a---~ggVLfIDE~~~l~~~~~---~~~~~~e~~~~L~~~me~~~------~~~~vI~ag~~~~~~~~~~~np 181 (287)
T CHL00181 114 TKEVLKKA---MGGVLFIDEAYYLYKPDN---ERDYGSEAIEILLQVMENQR------DDLVVIFAGYKDRMDKFYESNP 181 (287)
T ss_pred HHHHHHHc---cCCEEEEEccchhccCCC---ccchHHHHHHHHHHHHhcCC------CCEEEEEeCCcHHHHHHHhcCH
Confidence 34455554 468999999999976432 22334567888899888643 3467777765321 3469
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcc--cCCccc---HHHHHHH--ccCCC-HHHHHHHHHHHHHHHHHHHHhc
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV--IDVNLD---FHKISKM--LEGYT-GSDIANLARDAAMMSIRRKIMG 150 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~--~~~~~~---~~~la~~--t~g~s-~~dl~~l~~~A~~~a~~~~~~~ 150 (202)
++++||+..|+|+.++.+++..|++.++.+.. ++++.. ...+.+. .+.|. ++++++++++|...-..|....
T Consensus 182 ~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 182 GLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred HHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999996543 332221 1222222 24566 8999999999998888887643
No 46
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.29 E-value=6.7e-11 Score=108.26 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=104.3
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-----Cc
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-----DI 76 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-----~l 76 (202)
++++.+|..++...|+||||||+|.|++.++..+... .+.+.|...+ .. ..+.|||+|+.++ ..
T Consensus 265 ~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~---d~~nlLkp~L----~~----g~i~vIgATt~~E~~~~~~~ 333 (758)
T PRK11034 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV---DAANLIKPLL----SS----GKIRVIGSTTYQEFSNIFEK 333 (758)
T ss_pred HHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHH---HHHHHHHHHH----hC----CCeEEEecCChHHHHHHhhc
Confidence 3578889988888999999999999998764322111 1222232222 22 5689999999865 68
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccH-----HHHHHHc-----cCCCHHHHHHHHHHHHHHHHHH
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDF-----HKISKML-----EGYTGSDIANLARDAAMMSIRR 146 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~-----~~la~~t-----~g~s~~dl~~l~~~A~~~a~~~ 146 (202)
|+++.|||+ .|.++.|+.+++..||+.+..++....++++ ...+..+ ..+-|...-.++.+|+......
T Consensus 334 D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~ 412 (758)
T PRK11034 334 DRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM 412 (758)
T ss_pred cHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccC
Confidence 999999996 7999999999999999998876554444443 3333333 3455667778888887533210
Q ss_pred HHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 147 KIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
.... ....|+.+|+.+.+....
T Consensus 413 ~~~~-------------~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 413 PVSK-------------RKKTVNVADIESVVARIA 434 (758)
T ss_pred cccc-------------cccccChhhHHHHHHHHh
Confidence 0000 012577788888887765
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.23 E-value=6.3e-10 Score=91.42 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=95.0
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC--CCC---cc
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH--PWD---ID 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~--~~~---ld 77 (202)
+++.+|+.| .++||||||+|.+.+.+. +......+.+.|+..|+.-. ..++||++++. ++. ++
T Consensus 112 ~~~~~~~~a---~~gvL~iDEi~~L~~~~~---~~~~~~~~~~~Ll~~le~~~------~~~~vI~a~~~~~~~~~~~~n 179 (284)
T TIGR02880 112 KTKEILKRA---MGGVLFIDEAYYLYRPDN---ERDYGQEAIEILLQVMENQR------DDLVVILAGYKDRMDSFFESN 179 (284)
T ss_pred HHHHHHHHc---cCcEEEEechhhhccCCC---ccchHHHHHHHHHHHHhcCC------CCEEEEEeCCcHHHHHHHhhC
Confidence 455667665 458999999999975432 22234567788899888643 34677777654 233 47
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHc------cCC-CHHHHHHHHHHHHHHHHHHHHh
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKML------EGY-TGSDIANLARDAAMMSIRRKIM 149 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t------~g~-s~~dl~~l~~~A~~~a~~~~~~ 149 (202)
|++++||+..|+||.++.+++..|++.++++.... ....+..++... +.+ +++++++++..|......|...
T Consensus 180 p~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~ 259 (284)
T TIGR02880 180 PGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFC 259 (284)
T ss_pred HHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999764322 112233343331 233 4899999999998887777654
No 48
>KOG0743|consensus
Probab=99.21 E-value=6.5e-11 Score=100.47 Aligned_cols=119 Identities=24% Similarity=0.227 Sum_probs=87.4
Q ss_pred CCeEEEEccccccccccCCCCc-----c-hHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh--cccc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSE-----H-EASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR--RFEK 86 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~-----~-~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r--rf~~ 86 (202)
.-|||+|++||+-+..++.... . ....-.++.||+++||+.+. -.+--+||.|||+++.|||||+| |.|.
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs--cg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS--CGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccccc--CCCceEEEEecCChhhcCHhhcCCCccee
Confidence 4589999999998764432111 1 12335688999999999987 22345788999999999999999 9999
Q ss_pred eeeecCCCHHHHHHHHHHHhcCcc-cCCcccHHHHHHHccCCCHHHHHHHH
Q psy3540 87 RVYIPLPNEWARYQLLTLCLEGVV-IDVNLDFHKISKMLEGYTGSDIANLA 136 (202)
Q Consensus 87 ~i~i~~P~~~~R~~il~~~l~~~~-~~~~~~~~~la~~t~g~s~~dl~~l~ 136 (202)
+|+++..+.++-..+++.|++.-. +.---++..+...++ .||||+....
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~-~tPA~V~e~l 413 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETE-VTPAQVAEEL 413 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCc-cCHHHHHHHH
Confidence 999999999999999999997532 111113444333333 6999987643
No 49
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.18 E-value=1e-09 Score=89.01 Aligned_cols=135 Identities=15% Similarity=0.119 Sum_probs=91.2
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC-----CCcc
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP-----WDID 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~-----~~ld 77 (202)
.++.+|+.| .++||||||+|.|... ++.......+..|+..|+.... .+++|+++... ..++
T Consensus 96 ~~~~~~~~a---~~~VL~IDE~~~L~~~----~~~~~~~~~i~~Ll~~~e~~~~------~~~vila~~~~~~~~~~~~~ 162 (261)
T TIGR02881 96 KTREVIKKA---LGGVLFIDEAYSLARG----GEKDFGKEAIDTLVKGMEDNRN------EFVLILAGYSDEMDYFLSLN 162 (261)
T ss_pred HHHHHHHhc---cCCEEEEechhhhccC----CccchHHHHHHHHHHHHhccCC------CEEEEecCCcchhHHHHhcC
Confidence 456677666 3689999999999642 1222234567888888887543 35555554322 2368
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHc---------cCCCHHHHHHHHHHHHHHHHHHH
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKML---------EGYTGSDIANLARDAAMMSIRRK 147 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t---------~g~s~~dl~~l~~~A~~~a~~~~ 147 (202)
|++++||+..+++|.++.+++..|++.++...... ++.-+..|+... ..-+++.+.+++..|......|.
T Consensus 163 p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~ 242 (261)
T TIGR02881 163 PGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRL 242 (261)
T ss_pred hHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999754332 122233443221 12467888888888887777776
Q ss_pred Hhc
Q psy3540 148 IMG 150 (202)
Q Consensus 148 ~~~ 150 (202)
...
T Consensus 243 ~~~ 245 (261)
T TIGR02881 243 LDK 245 (261)
T ss_pred hcc
Confidence 543
No 50
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.02 E-value=1.6e-08 Score=84.69 Aligned_cols=155 Identities=12% Similarity=0.069 Sum_probs=102.6
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCC-------CCCceEEEEEecCCCCCccHHHH
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSL-------YEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~-------~~~~~v~viatTn~~~~ld~al~ 81 (202)
..++||||||+|.+.... -..|...|+... +.. ..-.++++|++||++..++++++
T Consensus 101 ~~~~vl~IDEi~~l~~~~------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 101 EEGDVLFIDEIHRLSPVV------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred ccCCEEEEecHhhcchHH------------HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHH
Confidence 357899999999984311 112333343321 000 00134788999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhh
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIK 160 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~ 160 (202)
+||...+.++.|+.+++.+|++...+...+. ++..+..|+..+.|.- +.+..+++.+...+..+..
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a~~~~~------------ 235 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFAQVKGD------------ 235 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHcCC------------
Confidence 9999999999999999999999988755433 2334789999998854 7777777776665553311
Q ss_pred hccCCCCCcHHHHHHHHHHhCCCC---CHHHHHHHHHHHHH
Q psy3540 161 QEDIDLPVTEKDFREAIARCRKSV---TAHDLSKYDSWMNE 198 (202)
Q Consensus 161 ~~~~~~~it~~df~~Al~~~~Ps~---s~~~~~~~~~~~~~ 198 (202)
..|+.++...++..+.... +..+...+..+.+.
T Consensus 236 -----~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~ 271 (328)
T PRK00080 236 -----GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEK 271 (328)
T ss_pred -----CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHH
Confidence 1567777777777665432 23344444434444
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.01 E-value=4.1e-09 Score=97.47 Aligned_cols=136 Identities=11% Similarity=0.094 Sum_probs=92.8
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC---------CCCCceEEEEEecCCC
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS---------LYEDKIIMILAATNHP 73 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~---------~~~~~~v~viatTn~~ 73 (202)
.+.+.|..|....| ||||||||.+.+...+ + ..+.|+..||.-... ...-.++++|+|||.+
T Consensus 403 ~i~~~l~~~~~~~~-villDEidk~~~~~~~--~------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~ 473 (775)
T TIGR00763 403 RIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG--D------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI 473 (775)
T ss_pred hHHHHHHHhCcCCC-EEEEechhhcCCccCC--C------HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc
Confidence 45677888877777 8899999999864321 1 245677776631110 0011468999999999
Q ss_pred CCccHHHHhcccceeeecCCCHHHHHHHHHHHhc-----CcccC------CcccHHHHHH-HccCCCHHHHHHHHHHHHH
Q psy3540 74 WDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLE-----GVVID------VNLDFHKISK-MLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 74 ~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~-----~~~~~------~~~~~~~la~-~t~g~s~~dl~~l~~~A~~ 141 (202)
+.+++++++||+ .|+++.|+.+++..|++.++. ...+. .+..+..|++ .|..+..++|+..+...+.
T Consensus 474 ~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~ 552 (775)
T TIGR00763 474 DTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICR 552 (775)
T ss_pred hhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHH
Confidence 999999999995 789999999999999998872 11111 1223455554 4445667778777777776
Q ss_pred HHHHHHH
Q psy3540 142 MSIRRKI 148 (202)
Q Consensus 142 ~a~~~~~ 148 (202)
.+..+..
T Consensus 553 ~~~~~~~ 559 (775)
T TIGR00763 553 KAAVKLV 559 (775)
T ss_pred HHHHHHH
Confidence 6655544
No 52
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.99 E-value=7e-09 Score=96.56 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=84.2
Q ss_pred hHHHHHHHHhhh-CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-----C
Q psy3540 2 REVQRTNVPSNS-YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-----D 75 (202)
Q Consensus 2 k~i~~~F~~A~~-~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-----~ 75 (202)
+.|+.+|..++. ..++||||||++.|.+.+++.+... ..+.|+-.+. + +.+.+||||+..+ .
T Consensus 266 ~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~n~Lkp~l~----~----G~l~~IgaTT~~e~~~~~~ 333 (852)
T TIGR03345 266 NRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGD----AANLLKPALA----R----GELRTIAATTWAEYKKYFE 333 (852)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccccc----HHHHhhHHhh----C----CCeEEEEecCHHHHhhhhh
Confidence 478889998875 4689999999999998764322221 2233333322 2 5688999998743 4
Q ss_pred ccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-----CcccHHHHHHHccCCCH
Q psy3540 76 IDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-----VNLDFHKISKMLEGYTG 129 (202)
Q Consensus 76 ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t~g~s~ 129 (202)
+|+||.|||. .|.++.|+.+++..||+.+...+... .+..+..++..+.+|.+
T Consensus 334 ~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 334 KDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred ccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 8999999995 89999999999999988777543211 35568888999988864
No 53
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=98.96 E-value=4.6e-10 Score=70.86 Aligned_cols=36 Identities=44% Similarity=0.923 Sum_probs=33.5
Q ss_pred CCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC
Q psy3540 165 DLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 200 (202)
Q Consensus 165 ~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~ 200 (202)
.++|+.+||+.||++++|||+.+++.+|++|.++||
T Consensus 27 ~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 27 EPPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 447999999999999999999999999999999999
No 54
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.93 E-value=2.4e-08 Score=84.60 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=80.8
Q ss_pred HHHHHHhh-hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC---CccHHH
Q psy3540 5 QRTNVPSN-SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW---DIDEAF 80 (202)
Q Consensus 5 ~~~F~~A~-~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~---~ld~al 80 (202)
+.++.... ...|.||+|||+|.+.... ..++..|+...+.... ++.++.+|++||.++ .+++.+
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~~~~~~~---~~~~v~lI~i~n~~~~~~~l~~~~ 185 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRARSNGDL---DNAKVGVIGISNDLKFRENLDPRV 185 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhccccccCC---CCCeEEEEEEECCcchHhhcCHHH
Confidence 44444443 3457899999999997221 1134444433111111 225789999999886 588888
Q ss_pred Hhccc-ceeeecCCCHHHHHHHHHHHhcCc----ccCCcc-c-HHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy3540 81 RRRFE-KRVYIPLPNEWARYQLLTLCLEGV----VIDVNL-D-FHKISKMLEGYTGSDIANLARDAAMMSIRR 146 (202)
Q Consensus 81 ~rrf~-~~i~i~~P~~~~R~~il~~~l~~~----~~~~~~-~-~~~la~~t~g~s~~dl~~l~~~A~~~a~~~ 146 (202)
.+||. ..++|++++.++..+|++..+... .++.++ + +..++..+.|. ++..-.+|+.|...|..+
T Consensus 186 ~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd-~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 186 KSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD-ARKAIDLLRVAGEIAERE 257 (365)
T ss_pred hccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHc
Confidence 88885 689999999999999999988521 122111 1 23344455564 334445777887777554
No 55
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.90 E-value=2.7e-08 Score=82.31 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=83.4
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC-----C-------CCCceEEEEEecCCCCCccHHHH
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS-----L-------YEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~-----~-------~~~~~v~viatTn~~~~ld~al~ 81 (202)
..+.||||||+|.+.... ...|...|++.... . ....++++|++||++..++++++
T Consensus 80 ~~~~vl~iDEi~~l~~~~------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 80 EEGDVLFIDEIHRLSPAV------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred ccCCEEEEehHhhhCHHH------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHH
Confidence 357899999999985321 12244444332210 0 01134789999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
+||...+.++.|+.++..++++...+..... ++..+..++..+.|+- +.+..++..+...|
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a 209 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFA 209 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHH
Confidence 9999999999999999999999888644332 2345788999999855 66677777665444
No 56
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.88 E-value=7.1e-09 Score=96.67 Aligned_cols=114 Identities=17% Similarity=0.203 Sum_probs=78.4
Q ss_pred hHHHHHHHHhh-hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-----C
Q psy3540 2 REVQRTNVPSN-SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-----D 75 (202)
Q Consensus 2 k~i~~~F~~A~-~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-----~ 75 (202)
+.++.+|..+. ...|+||||||++.|++.+++.+.... .+.|...+ .+ +.+.+||+|+..+ .
T Consensus 257 ~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~----~~~lkp~l----~~----g~l~~IgaTt~~e~r~~~~ 324 (857)
T PRK10865 257 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDA----GNMLKPAL----AR----GELHCVGATTLDEYRQYIE 324 (857)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhH----HHHhcchh----hc----CCCeEEEcCCCHHHHHHhh
Confidence 35788888754 457999999999999877644333222 22222222 22 5689999999877 4
Q ss_pred ccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-----CcccHHHHHHHccCCC
Q psy3540 76 IDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-----VNLDFHKISKMLEGYT 128 (202)
Q Consensus 76 ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t~g~s 128 (202)
+|+|+.|||+ .|.++.|+.+++..||+.+...+... .+..+...+..+++|.
T Consensus 325 ~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 325 KDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred hcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 8999999997 58899999999999999887654322 2233444445555444
No 57
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.85 E-value=7.4e-08 Score=82.41 Aligned_cols=120 Identities=15% Similarity=0.198 Sum_probs=80.8
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC---CCccHHHHhccc-ceee
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP---WDIDEAFRRRFE-KRVY 89 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~---~~ld~al~rrf~-~~i~ 89 (202)
..|.||+|||+|.+.... + ...+..|+..++...+ .++.+|+++|.+ +.+++.+.+||. ..+.
T Consensus 137 ~~~~viviDE~d~l~~~~---~-----~~~l~~l~~~~~~~~~-----~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~ 203 (394)
T PRK00411 137 DRVLIVALDDINYLFEKE---G-----NDVLYSLLRAHEEYPG-----ARIGVIGISSDLTFLYILDPRVKSVFRPEEIY 203 (394)
T ss_pred CCEEEEEECCHhHhhccC---C-----chHHHHHHHhhhccCC-----CeEEEEEEECCcchhhhcCHHHHhcCCcceee
Confidence 357899999999997221 1 1246667766665543 368888888876 357788887774 6789
Q ss_pred ecCCCHHHHHHHHHHHhcCcc---cCCcccHHHHHHHccCCC--HHHHHHHHHHHHHHHHHH
Q psy3540 90 IPLPNEWARYQLLTLCLEGVV---IDVNLDFHKISKMLEGYT--GSDIANLARDAAMMSIRR 146 (202)
Q Consensus 90 i~~P~~~~R~~il~~~l~~~~---~~~~~~~~~la~~t~g~s--~~dl~~l~~~A~~~a~~~ 146 (202)
+++++.++..+|++..+.... .-++..+..+++.+.+.+ .+.+-.+|..|...|..+
T Consensus 204 f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 204 FPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred cCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 999999999999999885321 112334677777775432 344446677776666544
No 58
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.85 E-value=6.8e-08 Score=83.19 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=80.9
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCC---ccHHHHhccc--ceee
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWD---IDEAFRRRFE--KRVY 89 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~---ld~al~rrf~--~~i~ 89 (202)
.+.+|+|||+|.+.+++. ....|+..++.+... ...+||+++..|.. +++.+++||. ..+.
T Consensus 199 ~~dlLiiDDi~~l~~~~~----------~~~~l~~~~n~~~~~----~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~ 264 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKER----------TQEEFFHTFNALHEN----GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVD 264 (405)
T ss_pred hCCEEEEehhhhhcCCHH----------HHHHHHHHHHHHHHC----CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEE
Confidence 467999999999865321 123455555544333 33466666666665 4577888996 4899
Q ss_pred ecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy3540 90 IPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSI 144 (202)
Q Consensus 90 i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~ 144 (202)
++.|+.++|..|++..+....+. ++..+..||....| +.++|..++......+.
T Consensus 265 i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 265 IEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYAS 319 (405)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999755443 34457889988765 77888888887665554
No 59
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.81 E-value=9.5e-08 Score=83.39 Aligned_cols=133 Identities=20% Similarity=0.264 Sum_probs=91.6
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCC---ccHHHHhccc--ceee
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWD---IDEAFRRRFE--KRVY 89 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~---ld~al~rrf~--~~i~ 89 (202)
.+.+|+|||+|.+.+++. ....|+..++.+... ...+||+++..|.. +++.+++||. ..+.
T Consensus 211 ~~dlLiiDDi~~l~~~~~----------~~~~l~~~~n~l~~~----~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~ 276 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKER----------TQEEFFHTFNALHEA----GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVD 276 (450)
T ss_pred cCCEEEEehhhhhcCCHH----------HHHHHHHHHHHHHHC----CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEE
Confidence 688999999999865431 123455555555443 23466666666665 6688888996 5899
Q ss_pred ecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCC
Q psy3540 90 IPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPV 168 (202)
Q Consensus 90 i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~i 168 (202)
++.|+.++|..|++..+...++. ++..++.||..+.| +.++|..++......+.... .+|
T Consensus 277 i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~------------------~~i 337 (450)
T PRK00149 277 IEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTG------------------KPI 337 (450)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhC------------------CCC
Confidence 99999999999999999754332 34458888888876 77888877776655543321 156
Q ss_pred cHHHHHHHHHHh
Q psy3540 169 TEKDFREAIARC 180 (202)
Q Consensus 169 t~~df~~Al~~~ 180 (202)
|.+.+.++|..+
T Consensus 338 t~~~~~~~l~~~ 349 (450)
T PRK00149 338 TLELAKEALKDL 349 (450)
T ss_pred CHHHHHHHHHHh
Confidence 777777777654
No 60
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.80 E-value=2.1e-08 Score=93.63 Aligned_cols=115 Identities=16% Similarity=0.173 Sum_probs=82.2
Q ss_pred hHHHHHHHHhhhC-CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-----C
Q psy3540 2 REVQRTNVPSNSY-RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-----D 75 (202)
Q Consensus 2 k~i~~~F~~A~~~-~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-----~ 75 (202)
+.++.+|..+... .|+||||||++.|++.+.+.+.. ...+.|...+ .. ..+.+||+|+..+ .
T Consensus 252 ~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~----d~~~~Lk~~l----~~----g~i~~IgaTt~~e~r~~~~ 319 (852)
T TIGR03346 252 ERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAM----DAGNMLKPAL----AR----GELHCIGATTLDEYRKYIE 319 (852)
T ss_pred HHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchh----HHHHHhchhh----hc----CceEEEEeCcHHHHHHHhh
Confidence 3678888888654 69999999999998755332221 1223332222 22 5689999999874 5
Q ss_pred ccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-----CcccHHHHHHHccCCCH
Q psy3540 76 IDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-----VNLDFHKISKMLEGYTG 129 (202)
Q Consensus 76 ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t~g~s~ 129 (202)
+|+++.|||. .|.++.|+.+++..||+.+...+... .+..+...+..+.+|..
T Consensus 320 ~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 320 KDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred cCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 8999999996 58999999999999999987665433 23456677777777764
No 61
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.78 E-value=7.8e-08 Score=85.49 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=75.8
Q ss_pred eEEEEEecCCCCCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy3540 63 IIMILAATNHPWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 63 ~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~ 141 (202)
..++.+||+.|+.+++++++|+. .+.++.++.+++..|++..+++..+. ++..++.|+..+ ++++++.++++.|+.
T Consensus 234 ~rlI~ATt~~p~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 234 FRLIGATTRNPEEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAG 310 (531)
T ss_pred eEEEEEecCCcccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHH
Confidence 35667788889999999999984 67888889999999999999765543 233466677665 389999999999988
Q ss_pred HHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHH
Q psy3540 142 MSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 179 (202)
Q Consensus 142 ~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~ 179 (202)
.|..+.. ..|+.+|++.++..
T Consensus 311 ~A~~~~~-----------------~~It~~dI~~vl~~ 331 (531)
T TIGR02902 311 IALGEGR-----------------KRILAEDIEWVAEN 331 (531)
T ss_pred HHhhCCC-----------------cEEcHHHHHHHhCC
Confidence 7754321 26999999999873
No 62
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.62 E-value=7.5e-07 Score=77.54 Aligned_cols=114 Identities=16% Similarity=0.237 Sum_probs=78.0
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc---HHHHhcc--ccee
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID---EAFRRRF--EKRV 88 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld---~al~rrf--~~~i 88 (202)
.+|.+|+|||++.+.++.+ ...+|...++.+... ...+|+++.+.|..++ +.+++|| ...+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~----------~q~elf~~~n~l~~~----~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v 258 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTG----------VQTELFHTFNELHDS----GKQIVICSDREPQKLSEFQDRLVSRFQMGLVA 258 (440)
T ss_pred hcCCEEEEechhhhcCcHH----------HHHHHHHHHHHHHHc----CCeEEEECCCCHHHHHHHHHHHhhHHhcCceE
Confidence 3689999999999865421 112344444444433 3356666667777654 5666688 4678
Q ss_pred eecCCCHHHHHHHHHHHhcC--cccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 89 YIPLPNEWARYQLLTLCLEG--VVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 89 ~i~~P~~~~R~~il~~~l~~--~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
.++.|+.+.|..|++..+.. ..++ +..+..||....| +.++|..++.+-...+
T Consensus 259 ~i~~pd~e~r~~IL~~~~~~~~~~l~-~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 259 KLEPPDEETRKKIARKMLEIEHGELP-EEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred eeCCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 89999999999999999864 3333 4447888888876 7788888777654444
No 63
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.61 E-value=9.9e-08 Score=88.92 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=82.9
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-----Cc
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-----DI 76 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-----~l 76 (202)
+.|+.+|+.++...|+||||||+|.|++..+..+... +.+.|...+. . +.+.+||+|+..+ ..
T Consensus 258 ~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~----~a~lLkp~l~----r----g~l~~IgaTt~~ey~~~ie~ 325 (821)
T CHL00095 258 ERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAID----AANILKPALA----R----GELQCIGATTLDEYRKHIEK 325 (821)
T ss_pred HHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCccc----HHHHhHHHHh----C----CCcEEEEeCCHHHHHHHHhc
Confidence 3688999999888999999999999997664333221 2222322222 1 5588999999764 58
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHHHHHhcC----ccc-CCcccHHHHHHHccCCCHH
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEG----VVI-DVNLDFHKISKMLEGYTGS 130 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il~~~l~~----~~~-~~~~~~~~la~~t~g~s~~ 130 (202)
|+++.+||. .|.++.|+.++...|++..... ..+ -++..+..++..+.||.+.
T Consensus 326 D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~ 383 (821)
T CHL00095 326 DPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIAD 383 (821)
T ss_pred CHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc
Confidence 999999997 4799999999999999876532 111 1344577888888888753
No 64
>PRK06893 DNA replication initiation factor; Validated
Probab=98.60 E-value=4.4e-07 Score=72.30 Aligned_cols=111 Identities=8% Similarity=0.084 Sum_probs=75.5
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc---HHHHhcc--cceee
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID---EAFRRRF--EKRVY 89 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld---~al~rrf--~~~i~ 89 (202)
++.+|+|||++.+.+.+. . ...|...++..... +..++|++++..|..++ +.+++|+ +..+.
T Consensus 91 ~~dlLilDDi~~~~~~~~-------~---~~~l~~l~n~~~~~---~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~ 157 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE-------W---ELAIFDLFNRIKEQ---GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQ 157 (229)
T ss_pred cCCEEEEeChhhhcCChH-------H---HHHHHHHHHHHHHc---CCcEEEEeCCCChHHccccchhHHHHHhcCCeee
Confidence 567999999999865331 1 12344444444332 13456677777788776 7888854 68999
Q ss_pred ecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 90 IPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 90 i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
++.|+.++|..|++.......+. ++.-+..|+++.+| +.+.+..++...
T Consensus 158 l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 158 LNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 99999999999999887533332 34457788888875 666666666654
No 65
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.55 E-value=2.5e-06 Score=74.34 Aligned_cols=155 Identities=13% Similarity=0.211 Sum_probs=94.1
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC---CccHHHHhccc--cee
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW---DIDEAFRRRFE--KRV 88 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~---~ld~al~rrf~--~~i 88 (202)
..+.+|+|||++.+.++... ..+|...++.+... +..+|++++..|. .+++.+++||. ..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~----------qeelf~l~N~l~~~----~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~ 266 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGAT----------QEEFFHTFNSLHTE----GKLIVISSTCAPQDLKAMEERLISRFEWGIAI 266 (445)
T ss_pred ccCCEEEEcchhhhcCChhh----------HHHHHHHHHHHHHC----CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEE
Confidence 35779999999998643211 12233333332222 2245555555554 46788888995 789
Q ss_pred eecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCC
Q psy3540 89 YIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLP 167 (202)
Q Consensus 89 ~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 167 (202)
.++.|+.++|..||+..+....+. ++.-+..||....| +.+.|...+...+......... ..+
T Consensus 267 ~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~---------------~~~ 330 (445)
T PRK12422 267 PLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLS---------------HQL 330 (445)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhh---------------CCC
Confidence 999999999999999998765433 33346668887664 5566666555553222222121 126
Q ss_pred CcHHHHHHHHHHh---CC--CCCHHHHHHHHHHHHHhC
Q psy3540 168 VTEKDFREAIARC---RK--SVTAHDLSKYDSWMNEFG 200 (202)
Q Consensus 168 it~~df~~Al~~~---~P--s~s~~~~~~~~~~~~~~~ 200 (202)
||.++..++++.+ .+ .++.+.|. +.+.+.||
T Consensus 331 i~~~~~~~~l~~~~~~~~~~~~t~~~I~--~~Va~~~~ 366 (445)
T PRK12422 331 LYVDDIKALLHDVLEAAESVRLTPSKII--RAVAQYYG 366 (445)
T ss_pred CCHHHHHHHHHHhhhcccCCCCCHHHHH--HHHHHHhC
Confidence 8888888888865 22 24555554 34555554
No 66
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.52 E-value=3e-06 Score=75.84 Aligned_cols=115 Identities=11% Similarity=0.205 Sum_probs=76.7
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC-C---CCccHHHHhcc--cce
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH-P---WDIDEAFRRRF--EKR 87 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~-~---~~ld~al~rrf--~~~ 87 (202)
.++.+|+||||+.+.++... -..|...++.+... .+-+|| |+|. | ..+++.|++|| ...
T Consensus 376 ~~~DLLlIDDIq~l~gke~t----------qeeLF~l~N~l~e~----gk~III-TSd~~P~eL~~l~~rL~SRf~~GLv 440 (617)
T PRK14086 376 REMDILLVDDIQFLEDKEST----------QEEFFHTFNTLHNA----NKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLI 440 (617)
T ss_pred hcCCEEEEehhccccCCHHH----------HHHHHHHHHHHHhc----CCCEEE-ecCCChHhhhhccHHHHhhhhcCce
Confidence 46789999999999754311 12333444444332 222444 5554 4 35778899988 567
Q ss_pred eeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy3540 88 VYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSI 144 (202)
Q Consensus 88 i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~ 144 (202)
+.+..|+.+.|..||+..+....+. ++.-+..|+.+..+ +.+.|..++.+-...+.
T Consensus 441 v~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 441 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFAS 497 (617)
T ss_pred EEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 7999999999999999998654443 34447788888764 67788877776554443
No 67
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.52 E-value=1.2e-06 Score=80.62 Aligned_cols=118 Identities=17% Similarity=0.147 Sum_probs=77.1
Q ss_pred HHHHHHHHhh--hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC---CCCcc
Q psy3540 3 EVQRTNVPSN--SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH---PWDID 77 (202)
Q Consensus 3 ~i~~~F~~A~--~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~---~~~ld 77 (202)
.+..+|.... ...++||+|||||.|.... +.++-.|..... .. ...++|||++|. |+.++
T Consensus 855 vLerLF~~L~k~~r~v~IIILDEID~L~kK~---------QDVLYnLFR~~~-~s-----~SKLiLIGISNdlDLperLd 919 (1164)
T PTZ00112 855 ILDRLFNQNKKDNRNVSILIIDEIDYLITKT---------QKVLFTLFDWPT-KI-----NSKLVLIAISNTMDLPERLI 919 (1164)
T ss_pred HHHHHHhhhhcccccceEEEeehHhhhCccH---------HHHHHHHHHHhh-cc-----CCeEEEEEecCchhcchhhh
Confidence 4566676652 2346799999999997532 123333443322 11 256999999986 67788
Q ss_pred HHHHhcccc-eeeecCCCHHHHHHHHHHHhcCcc-cCCcccHHHHHHHccCCCHHHHHHHH
Q psy3540 78 EAFRRRFEK-RVYIPLPNEWARYQLLTLCLEGVV-IDVNLDFHKISKMLEGYTGSDIANLA 136 (202)
Q Consensus 78 ~al~rrf~~-~i~i~~P~~~~R~~il~~~l~~~~-~~~~~~~~~la~~t~g~s~~dl~~l~ 136 (202)
+.+++||.. .+.|++++.++..+||+..+.... .-.+.-+.-+|+... ...+|++..+
T Consensus 920 PRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SGDARKAL 979 (1164)
T PTZ00112 920 PRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSGDIRKAL 979 (1164)
T ss_pred hhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCCHHHHHH
Confidence 888888864 488899999999999999987532 112333556666544 3346766543
No 68
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=2.2e-06 Score=73.50 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=79.5
Q ss_pred hHHHHHHHHhhhCCC-----eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCc
Q psy3540 2 REVQRTNVPSNSYRV-----STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76 (202)
Q Consensus 2 k~i~~~F~~A~~~~P-----~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~l 76 (202)
..||++++.+.. .| .|+||||+|.+... ..+.||+.|+.-.. . +++|.+|++++.|
T Consensus 100 ~~iR~l~~~~~~-~p~~~~~kViiIDead~m~~~------------aanaLLk~LEep~~-----~-~~fIL~a~~~~~l 160 (394)
T PRK07940 100 DEVRELVTIAAR-RPSTGRWRIVVIEDADRLTER------------AANALLKAVEEPPP-----R-TVWLLCAPSPEDV 160 (394)
T ss_pred HHHHHHHHHHHh-CcccCCcEEEEEechhhcCHH------------HHHHHHHHhhcCCC-----C-CeEEEEECChHHC
Confidence 357888888864 34 59999999999431 24778888876432 3 4445555559999
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHH
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLA 136 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~ 136 (202)
.|++++|+ ..++|+.|+.++....|.... ... ......++..+.|..+.-+.-+.
T Consensus 161 lpTIrSRc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 161 LPTIRSRC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred hHHHHhhC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHhc
Confidence 99999987 699999999998877776322 232 34567889999998887665543
No 69
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.43 E-value=3e-06 Score=78.53 Aligned_cols=153 Identities=11% Similarity=0.125 Sum_probs=97.9
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC---------CCCCceEEEEEecCCCCC
Q psy3540 5 QRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS---------LYEDKIIMILAATNHPWD 75 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~---------~~~~~~v~viatTn~~~~ 75 (202)
.+.+..+....| ||+|||+|.+.+...+ + ..+.|+..+|.-... ...-.+|++|+|||.. .
T Consensus 407 ~~~l~~~~~~~~-villDEidk~~~~~~g--~------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~ 476 (784)
T PRK10787 407 IQKMAKVGVKNP-LFLLDEIDKMSSDMRG--D------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-N 476 (784)
T ss_pred HHHHHhcCCCCC-EEEEEChhhcccccCC--C------HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-C
Confidence 344555554556 8899999999754321 1 246777777741110 0011568999999987 5
Q ss_pred ccHHHHhcccceeeecCCCHHHHHHHHHHHhcC-----cccC------CcccHHHHHH-HccCCCHHHHHHHHHHHHHHH
Q psy3540 76 IDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEG-----VVID------VNLDFHKISK-MLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 76 ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~-----~~~~------~~~~~~~la~-~t~g~s~~dl~~l~~~A~~~a 143 (202)
|+++++.||. .|.++.++.++..+|.+.++-. ..+. ++--+..++. .|..+-.+.|+.+++..+..+
T Consensus 477 i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~ 555 (784)
T PRK10787 477 IPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKA 555 (784)
T ss_pred CCHHHhccee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHH
Confidence 9999999995 7889999999999999998831 1111 1112444443 345666788888888877777
Q ss_pred HHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHH
Q psy3540 144 IRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA 178 (202)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~ 178 (202)
+.+...+.. .....|+.+++.+.|-
T Consensus 556 l~~~~~~~~----------~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 556 VKQLLLDKS----------LKHIEINGDNLHDYLG 580 (784)
T ss_pred HHHHHhcCC----------CceeeecHHHHHHHhC
Confidence 766542211 0123577777776665
No 70
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.41 E-value=4.8e-06 Score=72.68 Aligned_cols=136 Identities=11% Similarity=0.103 Sum_probs=88.8
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCc---cHHHHhcc--ccee
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI---DEAFRRRF--EKRV 88 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~l---d~al~rrf--~~~i 88 (202)
..+.+|+|||++.+.++. .....|...++.+... +.-+|+.+...|..+ ++.+++|| +..+
T Consensus 205 ~~~dvLiIDDiq~l~~k~----------~~~e~lf~l~N~~~~~----~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~ 270 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKE----------KTNEIFFTIFNNFIEN----DKQLFFSSDKSPELLNGFDNRLITRFNMGLSI 270 (450)
T ss_pred ccCCEEEEeccccccCCH----------HHHHHHHHHHHHHHHc----CCcEEEECCCCHHHHhhccHHHHHHHhCCcee
Confidence 457799999999885432 1123344444444333 223454444445444 67888888 4788
Q ss_pred eecCCCHHHHHHHHHHHhcCccc---CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCC
Q psy3540 89 YIPLPNEWARYQLLTLCLEGVVI---DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID 165 (202)
Q Consensus 89 ~i~~P~~~~R~~il~~~l~~~~~---~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
.+..|+.++|..|++..+...++ -++.-+..||..+.| +++.|..++.+....+..... .
T Consensus 271 ~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~----------------~ 333 (450)
T PRK14087 271 AIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPE----------------E 333 (450)
T ss_pred ccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccC----------------C
Confidence 88999999999999999965432 234457788888877 888888888887655543311 0
Q ss_pred CCCcHHHHHHHHHHh
Q psy3540 166 LPVTEKDFREAIARC 180 (202)
Q Consensus 166 ~~it~~df~~Al~~~ 180 (202)
.+||.+...++++.+
T Consensus 334 ~~it~~~v~~~l~~~ 348 (450)
T PRK14087 334 KIITIEIVSDLFRDI 348 (450)
T ss_pred CCCCHHHHHHHHhhc
Confidence 156777777777654
No 71
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=7e-06 Score=69.80 Aligned_cols=118 Identities=21% Similarity=0.169 Sum_probs=84.6
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.++++...+.. ....|++|||+|.+-. ...+.||..++.... .+.+|.+|+.++.+.+
T Consensus 103 ~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~------------~a~naLLk~lEe~~~------~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 103 EMREILDNIYYSPSKSRFKVYLIDEVHMLSR------------HSFNALLKTLEEPPQ------HIKFILATTDVEKIPK 164 (363)
T ss_pred HHHHHHHHHhcCcccCCceEEEEEChhhcCH------------HHHHHHHHHHhcCCC------CeEEEEEcCChHhhhH
Confidence 34555554432 1235999999998732 234678888776443 3566777788899999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
++++|+ ..+.+++|+.++...+++..++..+.. ++..+..++..+.| +++++.+++..+.
T Consensus 165 tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 165 TILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHAI 225 (363)
T ss_pred HHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999887 578999999999999999988654432 34457778888877 7788777777664
No 72
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.40 E-value=4.2e-06 Score=70.55 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=85.5
Q ss_pred HHHHHHHHhhhC----CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNSY----RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~~----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.++++++.+... ..-||+|||+|.+.. ...+.|+..++... ..+++|.+|++++.+.+
T Consensus 101 ~~~~l~~~~~~~p~~~~~~vviidea~~l~~------------~~~~~Ll~~le~~~------~~~~lIl~~~~~~~l~~ 162 (355)
T TIGR02397 101 DIREILDNVKYAPSSGKYKVYIIDEVHMLSK------------SAFNALLKTLEEPP------EHVVFILATTEPHKIPA 162 (355)
T ss_pred HHHHHHHHHhcCcccCCceEEEEeChhhcCH------------HHHHHHHHHHhCCc------cceeEEEEeCCHHHHHH
Confidence 467777776532 224999999998732 23567888776643 34677778888999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~ 141 (202)
++++|+ ..++++.|+..+...+++..++..+.. ++..+..++..+.| +++.+.+.++.+..
T Consensus 163 ~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lekl~~ 224 (355)
T TIGR02397 163 TILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQLIS 224 (355)
T ss_pred HHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHHHHh
Confidence 999988 478999999999999999988655432 23456677887765 66777666666544
No 73
>PRK08727 hypothetical protein; Validated
Probab=98.40 E-value=5.4e-06 Score=66.23 Aligned_cols=132 Identities=18% Similarity=0.199 Sum_probs=80.2
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCc---cHHHHhcc--ccee
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI---DEAFRRRF--EKRV 88 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~l---d~al~rrf--~~~i 88 (202)
.++.+|+|||+|.+..... . . ..+...++..... +.-+|+.+...|..+ ++++++|| ...+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~------~-~---~~lf~l~n~~~~~----~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~ 157 (233)
T PRK08727 92 EGRSLVALDGLESIAGQRE------D-E---VALFDFHNRARAA----GITLLYTARQMPDGLALVLPDLRSRLAQCIRI 157 (233)
T ss_pred hcCCEEEEeCcccccCChH------H-H---HHHHHHHHHHHHc----CCeEEEECCCChhhhhhhhHHHHHHHhcCceE
Confidence 3567999999998865431 1 1 2233333333322 222455555567766 68999998 6788
Q ss_pred eecCCCHHHHHHHHHHHhc--CcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCC
Q psy3540 89 YIPLPNEWARYQLLTLCLE--GVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL 166 (202)
Q Consensus 89 ~i~~P~~~~R~~il~~~l~--~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
.++.|+.++|..|++.... ++.++ +..+..|+..+.| +...+.+++......+.... .
T Consensus 158 ~l~~~~~e~~~~iL~~~a~~~~l~l~-~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~------------------~ 217 (233)
T PRK08727 158 GLPVLDDVARAAVLRERAQRRGLALD-EAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK------------------R 217 (233)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC------------------C
Confidence 9999999999999998664 33333 4457788888763 33333333544333222211 1
Q ss_pred CCcHHHHHHHHHH
Q psy3540 167 PVTEKDFREAIAR 179 (202)
Q Consensus 167 ~it~~df~~Al~~ 179 (202)
+||...+.+.+..
T Consensus 218 ~it~~~~~~~l~~ 230 (233)
T PRK08727 218 RVTVPFLRRVLEE 230 (233)
T ss_pred CCCHHHHHHHHhh
Confidence 5777777776654
No 74
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.40 E-value=2.9e-06 Score=66.96 Aligned_cols=116 Identities=10% Similarity=0.136 Sum_probs=74.7
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc---HHHHhcc--cceee
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID---EAFRRRF--EKRVY 89 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld---~al~rrf--~~~i~ 89 (202)
.+.+|+|||+|.+.... . ....|...++..... ...+|+.++..+..++ +.+.+|| ...+.
T Consensus 90 ~~~lLvIDdi~~l~~~~------~----~~~~L~~~l~~~~~~----~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~ 155 (226)
T TIGR03420 90 QADLVCLDDVEAIAGQP------E----WQEALFHLYNRVREA----GGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQ 155 (226)
T ss_pred cCCEEEEeChhhhcCCh------H----HHHHHHHHHHHHHHc----CCeEEEECCCChHHCCcccHHHHHHHhcCeeEe
Confidence 34699999999884321 0 012333334433222 2235555555554443 7788777 57899
Q ss_pred ecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy3540 90 IPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIR 145 (202)
Q Consensus 90 i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~ 145 (202)
+|.|+.+++..+++.++.+..+. ++--+..|+.. -+-+.+++.++++.+...+..
T Consensus 156 l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 156 LPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999887543332 23446778886 456899999999887654433
No 75
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=2.6e-05 Score=71.31 Aligned_cols=118 Identities=17% Similarity=0.116 Sum_probs=87.5
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.|+++.+.+.. ....|+||||+|.|.. ...|.||+.|+.-.. .+.+|.+||+++.|.+
T Consensus 103 dIReLIe~a~~~P~~gr~KVIIIDEah~LT~------------~A~NALLKtLEEPP~------~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 103 EMAALLERAVYAPVDARFKVYMIDEVHMLTN------------HAFNAMLKTLEEPPP------HVKFILATTDPQKIPV 164 (830)
T ss_pred HHHHHHHHHHhccccCCceEEEEeChhhCCH------------HHHHHHHHHHHhcCC------CeEEEEEECChhhccc
Confidence 46666666542 1236999999999832 236788888887543 4788889999999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
.|++|+ ..+.|..++.++-...|+..++...+. .+..+..|++.+.| +.+|.-+++..+.
T Consensus 165 TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smRdALsLLdQAi 225 (830)
T PRK07003 165 TVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMRDALSLTDQAI 225 (830)
T ss_pred hhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999987 688899999999999999888654433 34457788899887 4566666666554
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=9.4e-06 Score=71.69 Aligned_cols=120 Identities=19% Similarity=0.167 Sum_probs=89.8
Q ss_pred HHHHHHHHhhhC----CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNSY----RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~~----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.|+.+++.|... ..-|++|||+|.+.. ...+.|+..|+.-. ..+++|.+|+.++.+++
T Consensus 112 ~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------~a~naLLk~LEepp------~~~vfI~aTte~~kI~~ 173 (507)
T PRK06645 112 DIRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------GAFNALLKTLEEPP------PHIIFIFATTEVQKIPA 173 (507)
T ss_pred HHHHHHHHHHhccccCCcEEEEEEChhhcCH------------HHHHHHHHHHhhcC------CCEEEEEEeCChHHhhH
Confidence 467777776532 235999999998832 23667887777533 34677777788899999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
++++|+ ..+++..++.++...+++..++..... .+..+..|+..+.| +.+++.++++.+...
T Consensus 174 tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 174 TIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQAASM 236 (507)
T ss_pred HHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 999887 578899999999999999999755433 23457789998887 888988888887544
No 77
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=7.8e-06 Score=71.70 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=80.6
Q ss_pred HHHHHHHHhhhC----CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNSY----RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~~----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.+|++.+.+... ...||+|||+|.+.. ...+.|+..++...+ .+++|++|+.|..+++
T Consensus 101 ~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~------------~a~~~LLk~LE~p~~------~vv~Ilattn~~kl~~ 162 (472)
T PRK14962 101 EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK------------EAFNALLKTLEEPPS------HVVFVLATTNLEKVPP 162 (472)
T ss_pred HHHHHHHHHhhChhcCCeEEEEEEChHHhHH------------HHHHHHHHHHHhCCC------cEEEEEEeCChHhhhH
Confidence 355555555421 246999999999842 134677877776443 3667777778899999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARD 138 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~ 138 (202)
++++|+. .+.+..|+.++...+++..+...+.. ++..+..|+..+.| +.+++-+.+..
T Consensus 163 ~L~SR~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~aln~Le~ 221 (472)
T PRK14962 163 TIISRCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRDALTMLEQ 221 (472)
T ss_pred HHhcCcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 9999985 89999999999999999888543322 24457788887765 55555555444
No 78
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.33 E-value=1.1e-05 Score=64.04 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=82.4
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC--CccHHHHhcc--cceeee
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW--DIDEAFRRRF--EKRVYI 90 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~--~ld~al~rrf--~~~i~i 90 (202)
.+.+|+|||+|.+... ....|...++..... ...+++++++..|. .+.+.+++|| ...+.+
T Consensus 90 ~~~~liiDdi~~l~~~------------~~~~L~~~~~~~~~~---~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l 154 (227)
T PRK08903 90 EAELYAVDDVERLDDA------------QQIALFNLFNRVRAH---GQGALLVAGPAAPLALPLREDLRTRLGWGLVYEL 154 (227)
T ss_pred cCCEEEEeChhhcCch------------HHHHHHHHHHHHHHc---CCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEe
Confidence 4679999999987321 112344444443332 12234444443332 3567788787 579999
Q ss_pred cCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCc
Q psy3540 91 PLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVT 169 (202)
Q Consensus 91 ~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it 169 (202)
++|+..++..+++.+.....+. ++.-+..|++..+| +..++..+++.-...+.... .+||
T Consensus 155 ~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~~------------------~~i~ 215 (227)
T PRK08903 155 KPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQK------------------RPVT 215 (227)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhC------------------CCCC
Confidence 9999999999999877543332 23357778886655 78888888887544343332 2788
Q ss_pred HHHHHHHHH
Q psy3540 170 EKDFREAIA 178 (202)
Q Consensus 170 ~~df~~Al~ 178 (202)
.....+++.
T Consensus 216 ~~~~~~~l~ 224 (227)
T PRK08903 216 LPLLREMLA 224 (227)
T ss_pred HHHHHHHHh
Confidence 888888775
No 79
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.32 E-value=5.5e-06 Score=66.28 Aligned_cols=110 Identities=10% Similarity=0.039 Sum_probs=71.0
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCC---ccHHHHhccc--ceeeec
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWD---IDEAFRRRFE--KRVYIP 91 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~---ld~al~rrf~--~~i~i~ 91 (202)
.+|+|||++.+.++. .. . ..|...++..... +..-+++.+++.|.. +.|.+++|+. .++.++
T Consensus 99 dlliiDdi~~~~~~~------~~-~---~~lf~l~n~~~e~---g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~ 165 (235)
T PRK08084 99 SLVCIDNIECIAGDE------LW-E---MAIFDLYNRILES---GRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQ 165 (235)
T ss_pred CEEEEeChhhhcCCH------HH-H---HHHHHHHHHHHHc---CCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeec
Confidence 589999999985432 11 1 1222222222221 012355566666666 5799999986 899999
Q ss_pred CCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 92 LPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 92 ~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
.|+.++|.++++.......+. ++.-++.|+...+| +.+.+..++....
T Consensus 166 ~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 166 PLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 999999999998866433222 34457788888875 6777777777643
No 80
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.29 E-value=2e-05 Score=68.21 Aligned_cols=115 Identities=21% Similarity=0.292 Sum_probs=77.4
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEec-CC-CCCc
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAAT-NH-PWDI 76 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatT-n~-~~~l 76 (202)
.++.+++.+.. ....||||||+|.+... ..+.|+..++. ..+++|++| .. ...+
T Consensus 76 ~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~------------~q~~LL~~le~--------~~iilI~att~n~~~~l 135 (413)
T PRK13342 76 DLREVIEEARQRRSAGRRTILFIDEIHRFNKA------------QQDALLPHVED--------GTITLIGATTENPSFEV 135 (413)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEechhhhCHH------------HHHHHHHHhhc--------CcEEEEEeCCCChhhhc
Confidence 46677777642 25689999999987421 23455655543 235666554 33 4589
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHHHHHhcCc-----ccCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGV-----VIDVNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~-----~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
++++++|+ ..+.++.|+.++...+++..+... .++ +..+..++..+.| .++.+.++++.+.
T Consensus 136 ~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 136 NPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred cHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 99999998 789999999999999999887542 222 3346678887754 5555556665554
No 81
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=1.8e-05 Score=70.90 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=86.7
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.|+++...+.. ...-|++|||+|.+.. ...+.||..++... ..+++|.+|+.|+.+.+
T Consensus 103 ~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~------------~a~naLLKtLEepp------~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 103 EIRDIRDKVKYAPSEAKYKVYIIDEVHMLST------------GAFNALLKTLEEPP------AHVIFILATTEPHKIPA 164 (559)
T ss_pred HHHHHHHHHhhCcccCCeEEEEEECcccCCH------------HHHHHHHHHhcCCC------CCeEEEEEeCChhhCcH
Confidence 46777776652 1235999999998832 23678888877643 34666666778999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~ 141 (202)
.+++|+. .+.|+.|+..+-...++..+++.++. .+..+..++..+.| +.++..+++..+..
T Consensus 165 tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 165 TILSRCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSILDQAIS 226 (559)
T ss_pred HHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9998875 67899999999999999888655433 23457778888877 88888887776643
No 82
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.3e-05 Score=70.61 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=85.8
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.||++.+.+.. ..-.|++|||+|.+.. ...|.||+.|+.-. .++++|.+||.++.|.+
T Consensus 108 dIReLie~~~~~P~~gr~KViIIDEah~Ls~------------~AaNALLKTLEEPP------~~v~FILaTtep~kLlp 169 (700)
T PRK12323 108 EMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN------------HAFNAMLKTLEEPP------EHVKFILATTDPQKIPV 169 (700)
T ss_pred HHHHHHHHHHhchhcCCceEEEEEChHhcCH------------HHHHHHHHhhccCC------CCceEEEEeCChHhhhh
Confidence 35566555532 2246999999999832 23678888877643 45788889999999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccCC-cccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDV-NLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~-~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
.|++|+ ..+.|..++.++-...|+..+.+..+.- +..+..|+..+.| +.++.-+++..+.
T Consensus 170 TIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 170 TVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred HHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999987 7889999999999998888876544332 2346777888776 6677777776554
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.4e-05 Score=68.40 Aligned_cols=117 Identities=15% Similarity=0.086 Sum_probs=81.6
Q ss_pred HHHHHHHHhh----hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSN----SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~----~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.+|++.+.+. .....|++|||+|.+.. ...+.||..|+.-. ..+++|++|+.++.|.+
T Consensus 105 ~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~------------~A~NALLKtLEEPp------~~viFILaTte~~kI~~ 166 (484)
T PRK14956 105 NIRELRDNVKFAPMGGKYKVYIIDEVHMLTD------------QSFNALLKTLEEPP------AHIVFILATTEFHKIPE 166 (484)
T ss_pred HHHHHHHHHHhhhhcCCCEEEEEechhhcCH------------HHHHHHHHHhhcCC------CceEEEeecCChhhccH
Confidence 3455544443 22346999999999832 24678888886533 45788888888999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
++++|+ ..+.|..++..+-...++..+....+. .+..+..||+.+.| +.+|.-+++..+
T Consensus 167 TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~lLeq~ 226 (484)
T PRK14956 167 TILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSFMEQA 226 (484)
T ss_pred HHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHHHHHH
Confidence 999987 467888888888888888887654432 34457778887777 456655555544
No 84
>PRK04132 replication factor C small subunit; Provisional
Probab=98.20 E-value=0.00014 Score=67.68 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=77.9
Q ss_pred HHHHHHHHhhhCCC------eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCc
Q psy3540 3 EVQRTNVPSNSYRV------STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76 (202)
Q Consensus 3 ~i~~~F~~A~~~~P------~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~l 76 (202)
.||++...+....| -|++|||+|.+-. ...+.|+..|+...+ .+.+|++||.++.+
T Consensus 612 ~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~------------~AQnALLk~lEep~~------~~~FILi~N~~~kI 673 (846)
T PRK04132 612 VIREKVKEFARTKPIGGASFKIIFLDEADALTQ------------DAQQALRRTMEMFSS------NVRFILSCNYSSKI 673 (846)
T ss_pred HHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH------------HHHHHHHHHhhCCCC------CeEEEEEeCChhhC
Confidence 45666655443333 5999999999942 135778888887554 47888999999999
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccC
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEG 126 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 126 (202)
.+++++|. ..+.|+.|+.++-...|+..+.+..+. ++..+..++..+.|
T Consensus 674 i~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 674 IEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred chHHhhhc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 99999985 688999999998888888877643332 34467788888776
No 85
>PRK09087 hypothetical protein; Validated
Probab=98.19 E-value=1.8e-05 Score=62.97 Aligned_cols=128 Identities=12% Similarity=0.123 Sum_probs=82.7
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCc---cHHHHhccc--ceeeec
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI---DEAFRRRFE--KRVYIP 91 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~l---d~al~rrf~--~~i~i~ 91 (202)
.+|+|||+|.+.. .+ .+|...++.+... +..+||+++..|..+ .+.+++||. ..+.+.
T Consensus 89 ~~l~iDDi~~~~~-----~~--------~~lf~l~n~~~~~----g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~ 151 (226)
T PRK09087 89 GPVLIEDIDAGGF-----DE--------TGLFHLINSVRQA----GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIG 151 (226)
T ss_pred CeEEEECCCCCCC-----CH--------HHHHHHHHHHHhC----CCeEEEECCCChHHhccccccHHHHHhCCceeecC
Confidence 4788899997621 11 2345555555443 345677776665533 577888885 899999
Q ss_pred CCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcH
Q psy3540 92 LPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTE 170 (202)
Q Consensus 92 ~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~ 170 (202)
.|+.+.|..+++..+....+. ++.-+..|+++.+| +.+.+..++......+.... .+||.
T Consensus 152 ~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~------------------~~it~ 212 (226)
T PRK09087 152 EPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK------------------SRITR 212 (226)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC------------------CCCCH
Confidence 999999999999999654433 34457788888763 34444444444333333221 26888
Q ss_pred HHHHHHHHHh
Q psy3540 171 KDFREAIARC 180 (202)
Q Consensus 171 ~df~~Al~~~ 180 (202)
..+.++++.+
T Consensus 213 ~~~~~~l~~~ 222 (226)
T PRK09087 213 ALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHhh
Confidence 8888888764
No 86
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.19 E-value=1.5e-05 Score=66.59 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=67.8
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCH
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNE 95 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~ 95 (202)
+.+|+|||+|.+... ..+.|...++..... ..+|.+|+.+..+.+.+++|+ ..+.+++|+.
T Consensus 126 ~~vlilDe~~~l~~~------------~~~~L~~~le~~~~~------~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~ 186 (337)
T PRK12402 126 YKTILLDNAEALRED------------AQQALRRIMEQYSRT------CRFIIATRQPSKLIPPIRSRC-LPLFFRAPTD 186 (337)
T ss_pred CcEEEEeCcccCCHH------------HHHHHHHHHHhccCC------CeEEEEeCChhhCchhhcCCc-eEEEecCCCH
Confidence 469999999987321 234556666654432 234556667778888888886 5789999999
Q ss_pred HHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 96 WARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 96 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
++...+++..+.+.... ++..+..|+..+. +|+..++...
T Consensus 187 ~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~----gdlr~l~~~l 227 (337)
T PRK12402 187 DELVDVLESIAEAEGVDYDDDGLELIAYYAG----GDLRKAILTL 227 (337)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHH
Confidence 99999999988654433 3445777887763 4454444433
No 87
>PRK05642 DNA replication initiation factor; Validated
Probab=98.16 E-value=2.5e-05 Score=62.49 Aligned_cols=113 Identities=15% Similarity=0.158 Sum_probs=75.8
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCc---cHHHHhcc--cceeeec
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI---DEAFRRRF--EKRVYIP 91 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~l---d~al~rrf--~~~i~i~ 91 (202)
.+++|||++.+.++.. ....|...++.+... +..++++++..|..+ .+.+++|| ...+.+.
T Consensus 99 d~LiiDDi~~~~~~~~----------~~~~Lf~l~n~~~~~----g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~ 164 (234)
T PRK05642 99 ELVCLDDLDVIAGKAD----------WEEALFHLFNRLRDS----GRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMR 164 (234)
T ss_pred CEEEEechhhhcCChH----------HHHHHHHHHHHHHhc----CCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecC
Confidence 4899999998854321 123455566655543 456777777766544 58899998 4777889
Q ss_pred CCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy3540 92 LPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSI 144 (202)
Q Consensus 92 ~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~ 144 (202)
.|+.++|..+++.......+. ++.-++.|++..+| +++.+..++..-...++
T Consensus 165 ~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l 217 (234)
T PRK05642 165 GLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASL 217 (234)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999655433222 34456778888764 77777777776544333
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.9e-05 Score=69.20 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=86.2
Q ss_pred HHHHHHHHhhhCCCe-----EEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 3 EVQRTNVPSNSYRVS-----TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~-----Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
.||++...+. +.|. |++|||+|.+... ..+.||..|+.-. ..+.+|.+|+.+..+.
T Consensus 108 ~iReli~~~~-~~p~~g~~KV~IIDEvh~Ls~~------------a~NaLLKtLEEPP------~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 108 EVQQLLEQAV-YKPVQGRFKVFMIDEVHMLTNT------------AFNAMLKTLEEPP------EYLKFVLATTDPQKVP 168 (618)
T ss_pred HHHHHHHHHH-hCcccCCceEEEEEChhhCCHH------------HHHHHHHhcccCC------CCeEEEEEECCchhhh
Confidence 4666666553 4553 9999999998431 2577887777643 3466677778899999
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~ 141 (202)
+.+++|. ..++|..++.++-...|+..+.+.++. .+..+..|+..+.| +.+++.+++..+..
T Consensus 169 ~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~ia 231 (618)
T PRK14951 169 VTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQAIA 231 (618)
T ss_pred HHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9988886 788999999999999998888654443 23457888888887 88888887765543
No 89
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.15 E-value=2.4e-05 Score=63.37 Aligned_cols=138 Identities=14% Similarity=0.150 Sum_probs=89.5
Q ss_pred hhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCc--eEEEEEecCCCCCc----cHHHHhcc
Q psy3540 11 SNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDK--IIMILAATNHPWDI----DEAFRRRF 84 (202)
Q Consensus 11 A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~--~v~viatTn~~~~l----d~al~rrf 84 (202)
.....+.+|+|||++.+... ....| ..+-..... ... .|++++.+...+.+ ...+.+|+
T Consensus 119 ~~~~~~~vliiDe~~~l~~~------------~~~~l-~~l~~~~~~--~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~ 183 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPE------------LLEEL-RMLSNFQTD--NAKLLQIFLVGQPEFRETLQSPQLQQLRQRI 183 (269)
T ss_pred HhCCCCeEEEEECcccCCHH------------HHHHH-HHHhCcccC--CCCeEEEEEcCCHHHHHHHcCchhHHHHhhe
Confidence 34567889999999987321 11222 222222211 112 22333333222122 12455688
Q ss_pred cceeeecCCCHHHHHHHHHHHhcCccc-----CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhh
Q psy3540 85 EKRVYIPLPNEWARYQLLTLCLEGVVI-----DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 159 (202)
Q Consensus 85 ~~~i~i~~P~~~~R~~il~~~l~~~~~-----~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~ 159 (202)
...++++..+.++-.+++...+..... -.+..+..|+..|.|+. ..|..+|..+...|..+..
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~----------- 251 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEK----------- 251 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCC-----------
Confidence 889999999999999999988864321 13446888999999986 4599999999888876532
Q ss_pred hhccCCCCCcHHHHHHHHHHhC
Q psy3540 160 KQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 160 ~~~~~~~~it~~df~~Al~~~~ 181 (202)
..|+.++++.++..+.
T Consensus 252 ------~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 252 ------REIGGEEVREVIAEID 267 (269)
T ss_pred ------CCCCHHHHHHHHHHhh
Confidence 2799999999998764
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=2.9e-05 Score=68.84 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=84.4
Q ss_pred HHHHHHHHhhhCCC-----eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 3 EVQRTNVPSNSYRV-----STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~P-----~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
.+|++.+.+. +.| .|++|||+|.+.. ...+.||..|+.... .+.+|.+|+.++.+.
T Consensus 103 ~iR~l~~~~~-~~p~~~~~kV~iIDE~~~ls~------------~a~naLLk~LEepp~------~~~fIlattd~~kl~ 163 (509)
T PRK14958 103 DTRELLDNIP-YAPTKGRFKVYLIDEVHMLSG------------HSFNALLKTLEEPPS------HVKFILATTDHHKLP 163 (509)
T ss_pred HHHHHHHHHh-hccccCCcEEEEEEChHhcCH------------HHHHHHHHHHhccCC------CeEEEEEECChHhch
Confidence 4555555543 234 4999999999843 135788888887543 366777778899999
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
+.+++|. ..++|..++..+-...++..++..+.. .+..+..++..+.| +.+++.+++..+.
T Consensus 164 ~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~al~lLdq~i 225 (509)
T PRK14958 164 VTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVRDALSLLDQSI 225 (509)
T ss_pred HHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHH
Confidence 9998887 567788888888788888777654433 33457788888876 8888888887764
No 91
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=0.00021 Score=64.79 Aligned_cols=105 Identities=19% Similarity=0.175 Sum_probs=79.6
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCH
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNE 95 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~ 95 (202)
.-|++|||+|.+.. ...+.||+.|..-. ..+.+|.+|+.+..|.+.+++|+ ..+.|..++.
T Consensus 120 ~KV~IIDEah~Ls~------------~a~NALLKtLEEPp------~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~ 180 (647)
T PRK07994 120 FKVYLIDEVHMLSR------------HSFNALLKTLEEPP------EHVKFLLATTDPQKLPVTILSRC-LQFHLKALDV 180 (647)
T ss_pred CEEEEEechHhCCH------------HHHHHHHHHHHcCC------CCeEEEEecCCccccchHHHhhh-eEeeCCCCCH
Confidence 35999999998832 24688999888754 34677777888999999999985 8899999999
Q ss_pred HHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 96 WARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 96 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
++-...|+..+....+. .+..+..|+..+.| +.++.-+++..|.
T Consensus 181 ~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~lldqai 225 (647)
T PRK07994 181 EQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999998888543333 23457778888877 6666667776554
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.12 E-value=2.4e-05 Score=60.27 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=70.5
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.++.+.+.+.. ...-||+|||+|.+... ..+.||..|+... ...++|.+|+.+..+.+
T Consensus 80 ~i~~i~~~~~~~~~~~~~kviiide~~~l~~~------------~~~~Ll~~le~~~------~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 80 QVRELVEFLSRTPQESGRRVVIIEDAERMNEA------------AANALLKTLEEPP------PNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHHccCcccCCeEEEEEechhhhCHH------------HHHHHHHHhcCCC------CCeEEEEEECChHhChH
Confidence 45555555543 34569999999988431 2466888887633 23566667778899999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccC
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEG 126 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g 126 (202)
++++|+ ..+.++.|+.++...+++.. +++ +..+..++..+.|
T Consensus 142 ~i~sr~-~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 142 TIRSRC-QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred HHHhhc-EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 999988 48999999999998888776 233 3346666666655
No 93
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.00022 Score=66.42 Aligned_cols=117 Identities=17% Similarity=0.098 Sum_probs=84.2
Q ss_pred HHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 4 VQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 4 i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
||++...+.. ..--|+||||+|.+-. ...+.||..|..-.. .+.+|++|+.+..|.+.
T Consensus 104 IReLie~v~~~P~~gk~KViIIDEAh~LT~------------eAqNALLKtLEEPP~------~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 104 TRELLDNVQYRPSRGRFKVYLIDEVHMLSR------------SSFNALLKTLEEPPE------HVKFLLATTDPQKLPVT 165 (944)
T ss_pred HHHHHHHHHhhhhcCCcEEEEEechHhcCH------------HHHHHHHHHHhccCC------CeEEEEECCCchhchHH
Confidence 5555544432 1235999999999832 246889988887543 36677778889999999
Q ss_pred HHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 80 FRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 80 l~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
|++|. ..+.|..++.++-...|+..+....+. .+-.+..|+..+.| +++++-+++..+.
T Consensus 166 IlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 166 VLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred HHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99876 678899999999998888888543322 23357778888877 6677777777655
No 94
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=4.3e-05 Score=69.39 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=87.9
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.|++++..+.. ....||+|||+|.+-. ...+.||..|+...+ .+.+|.+|+.+..+.+
T Consensus 103 ~IRelle~a~~~P~~gk~KVIIIDEad~Ls~------------~A~NALLKtLEEPp~------~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 103 NIREVLENAQYAPTAGKYKVYIIDEVHMLSK------------SAFNAMLKTLEEPPE------HVKFILATTDPHKVPV 164 (709)
T ss_pred HHHHHHHHHHhhhhhCCcEEEEEECccccCH------------HHHHHHHHHHHhCCC------CcEEEEEeCCccccch
Confidence 46777766532 1236999999987631 236789988887543 3677788889999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~ 141 (202)
.+++|+ ..+.|+.++.++-...|+..+.+.++. .+..+..|++.+.| +.+++.+++..+..
T Consensus 165 TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnLLDqaia 226 (709)
T PRK08691 165 TVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 999876 567888999999999999888755433 23457888888865 78888888877654
No 95
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00022 Score=64.54 Aligned_cols=118 Identities=19% Similarity=0.108 Sum_probs=86.6
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.||++...+.. ....|++|||+|.+-. ...+.|+..|+... ..+.+|.+|+.+..+.+
T Consensus 102 dIReli~~~~y~P~~gk~KV~IIDEVh~LS~------------~A~NALLKtLEEPP------~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 102 DTRELLDNVPYAPTQGRFKVYLIDEVHMLST------------HSFNALLKTLEEPP------EHVKFLFATTDPQKLPI 163 (702)
T ss_pred HHHHHHHHHhhhhhcCCcEEEEEechHhcCH------------HHHHHHHHHHhcCC------CCcEEEEEECChHhhhH
Confidence 45565555431 2345999999998832 13678888888744 34677778888999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
.+++|+ ..+.|..++..+-...++..+.+.++. .+..+..||..+.| +.+++.+++..+.
T Consensus 164 TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLDQaI 224 (702)
T PRK14960 164 TVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTDQAI 224 (702)
T ss_pred HHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999887 688999999999999998888654433 34457888988877 8888888877654
No 96
>PRK06620 hypothetical protein; Validated
Probab=98.09 E-value=4.7e-05 Score=60.10 Aligned_cols=103 Identities=11% Similarity=0.174 Sum_probs=70.2
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCC--ccHHHHhccc--ceeeec
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWD--IDEAFRRRFE--KRVYIP 91 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~--ld~al~rrf~--~~i~i~ 91 (202)
..+++|||+|.+ . . ..|...++.+... +..+|++++..|.. + +++++|+. ..+.+.
T Consensus 86 ~d~lliDdi~~~-----~-------~---~~lf~l~N~~~e~----g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~ 145 (214)
T PRK06620 86 YNAFIIEDIENW-----Q-------E---PALLHIFNIINEK----QKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLN 145 (214)
T ss_pred CCEEEEeccccc-----h-------H---HHHHHHHHHHHhc----CCEEEEEcCCCccccch-HHHHHHHhCCceEeeC
Confidence 468999999943 0 0 1333344444443 44677788777665 5 78888885 479999
Q ss_pred CCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 92 LPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 92 ~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
.|+.+.+..+++.......+. ++.-++.|+...+| +.+.+..++...
T Consensus 146 ~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 146 SPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 999999999998888643332 34457788888764 667777777663
No 97
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=6.9e-05 Score=66.55 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=86.9
Q ss_pred HHHHHHHHhhhCCC-----eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 3 EVQRTNVPSNSYRV-----STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~P-----~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
.|+++...++ +.| -|++|||+|.+.. ...+.||..|..... .+.+|.+|+.+..|.
T Consensus 101 ~IRelie~~~-~~P~~~~~KVvIIDEad~Lt~------------~A~NALLK~LEEpp~------~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 101 DIRELIEQTK-YKPSMARFKIFIIDEVHMLTK------------EAFNALLKTLEEPPS------YVKFILATTDPLKLP 161 (535)
T ss_pred HHHHHHHHHh-hCcccCCeEEEEEECcccCCH------------HHHHHHHHHHhhcCC------ceEEEEEECChhhCc
Confidence 4555554433 234 4899999988732 236788888887643 356666778889999
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
+++++|. ..++|..++.++-...++..+...+.. .+..+..|+..+.| +.+++.+++..+...+
T Consensus 162 ~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 162 ATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred hHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhc
Confidence 9999984 688999999998888888888654432 24467788888877 8888888888776543
No 98
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.06 E-value=8.2e-05 Score=61.80 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=55.9
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
.+.||+|||+|.+.... ....|...++.... .+.+|.+||.+..+++++++||. .+.++.|+
T Consensus 100 ~~~vliiDe~d~l~~~~-----------~~~~L~~~le~~~~------~~~~Ilt~n~~~~l~~~l~sR~~-~i~~~~p~ 161 (316)
T PHA02544 100 GGKVIIIDEFDRLGLAD-----------AQRHLRSFMEAYSK------NCSFIITANNKNGIIEPLRSRCR-VIDFGVPT 161 (316)
T ss_pred CCeEEEEECcccccCHH-----------HHHHHHHHHHhcCC------CceEEEEcCChhhchHHHHhhce-EEEeCCCC
Confidence 57899999999873211 12344455665443 35678899999999999999995 78999999
Q ss_pred HHHHHHHHHHHhc
Q psy3540 95 EWARYQLLTLCLE 107 (202)
Q Consensus 95 ~~~R~~il~~~l~ 107 (202)
.+++..+++.++.
T Consensus 162 ~~~~~~il~~~~~ 174 (316)
T PHA02544 162 KEEQIEMMKQMIV 174 (316)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988776543
No 99
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=7.2e-05 Score=65.80 Aligned_cols=120 Identities=17% Similarity=0.093 Sum_probs=88.8
Q ss_pred HHHHHHHHhhhC----CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNSY----RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~~----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.||.+...+... ..-|++|||+|.+.. ...+.|+..|+.-.. .+.+|.+|+.++.+.+
T Consensus 100 dIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~------------~A~NaLLK~LEePp~------~v~fIlatte~~Kl~~ 161 (491)
T PRK14964 100 DIKVILENSCYLPISSKFKVYIIDEVHMLSN------------SAFNALLKTLEEPAP------HVKFILATTEVKKIPV 161 (491)
T ss_pred HHHHHHHHHHhccccCCceEEEEeChHhCCH------------HHHHHHHHHHhCCCC------CeEEEEEeCChHHHHH
Confidence 466666666422 235999999988732 236788888887543 3677777788899999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
.+++|+ ..+++..++.++....++..+++.+.. ++..+..|+..+.| +.+++.+++..+...
T Consensus 162 tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslLdqli~y 224 (491)
T PRK14964 162 TIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLLEQAAIY 224 (491)
T ss_pred HHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 999887 568999999999999999888654433 34457788888876 888888888877543
No 100
>PRK04195 replication factor C large subunit; Provisional
Probab=98.02 E-value=0.00011 Score=64.72 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=73.0
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH-HHHhcccceeeecCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE-AFRRRFEKRVYIPLP 93 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~-al~rrf~~~i~i~~P 93 (202)
.+.||+|||+|.+.++. + ......|+..++.-. ..+|.+||.++.+++ .+++| ...+.|+.|
T Consensus 98 ~~kvIiIDEaD~L~~~~----d----~~~~~aL~~~l~~~~--------~~iIli~n~~~~~~~k~Lrsr-~~~I~f~~~ 160 (482)
T PRK04195 98 RRKLILLDEVDGIHGNE----D----RGGARAILELIKKAK--------QPIILTANDPYDPSLRELRNA-CLMIEFKRL 160 (482)
T ss_pred CCeEEEEecCccccccc----c----hhHHHHHHHHHHcCC--------CCEEEeccCccccchhhHhcc-ceEEEecCC
Confidence 57899999999986532 1 112456666665321 246668899999988 55544 468999999
Q ss_pred CHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy3540 94 NEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 94 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~ 141 (202)
+..+...+++..+...++. ++..+..|+..+. +||..++.....
T Consensus 161 ~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~ 205 (482)
T PRK04195 161 STRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQA 205 (482)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHH
Confidence 9999999999998654432 2445788888765 477776665433
No 101
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.0005 Score=62.98 Aligned_cols=118 Identities=20% Similarity=0.192 Sum_probs=85.0
Q ss_pred HHHHHHHHhhhC----CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNSY----RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~~----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.||++.+.+... ...|++|||+|.+.. ...+.||..|+... ..+++|.+|+.++.|.+
T Consensus 102 ~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------------~A~NALLKtLEEPP------~~tifILaTte~~KLl~ 163 (725)
T PRK07133 102 EIRELIENVKNLPTQSKYKIYIIDEVHMLSK------------SAFNALLKTLEEPP------KHVIFILATTEVHKIPL 163 (725)
T ss_pred HHHHHHHHHHhchhcCCCEEEEEEChhhCCH------------HHHHHHHHHhhcCC------CceEEEEEcCChhhhhH
Confidence 366666666532 335999999998742 13678888888744 34677778888999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
.+++|+. .+.|..|+.++-...++..+...++. .+..+..+|..+.| +.+++..++..+.
T Consensus 164 TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl~ 224 (725)
T PRK07133 164 TILSRVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQVS 224 (725)
T ss_pred HHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999885 89999999999999998887654433 23346677877765 5566666666543
No 102
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00015 Score=61.71 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=81.5
Q ss_pred HHHHHHHHhhhC----CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNSY----RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~~----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.+++++..+... .+.||+|||+|.+.. ...+.|+..++... ...++|.+|+.+..+.+
T Consensus 92 ~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~~------~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 92 DIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEPP------AHAIFILATTEKHKIIP 153 (367)
T ss_pred HHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCCC------CceEEEEEeCCcccCCH
Confidence 466667766432 346999999997742 13567777776633 23455566777899999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
++.+|+. .+.++.|+.++...++...+.+.+.. ++..+..|+..+.| +.+.+.+.++...
T Consensus 154 ~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 154 TILSRCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred HHHhcce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 9998874 68999999999999988888654432 34457778887755 6666666666544
No 103
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.0001 Score=68.69 Aligned_cols=106 Identities=14% Similarity=0.031 Sum_probs=78.6
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
..-|+||||+|.|.. ...|.||+.|+.... .+++|.+|+.++.|-+.|++|. ..+.|..++
T Consensus 120 ~~KV~IIDEad~lt~------------~a~NaLLK~LEEpP~------~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~ 180 (824)
T PRK07764 120 RYKIFIIDEAHMVTP------------QGFNALLKIVEEPPE------HLKFIFATTEPDKVIGTIRSRT-HHYPFRLVP 180 (824)
T ss_pred CceEEEEechhhcCH------------HHHHHHHHHHhCCCC------CeEEEEEeCChhhhhHHHHhhe-eEEEeeCCC
Confidence 345999999999942 236789998888654 3667777788899999999886 578899999
Q ss_pred HHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 95 EWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 95 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
.++-..+|+..+++..+. .+..+..|+..+.| +..++.++++...
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999888888888654433 23346667777766 7777777776644
No 104
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00036 Score=62.87 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=85.4
Q ss_pred HHHHHHHHhhhCCC-----eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 3 EVQRTNVPSNSYRV-----STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~P-----~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
.|+++...++ +.| -|++|||+|.+.. ...+.|+..|+... ..+++|.+|+.++.|.
T Consensus 103 ~ir~l~~~~~-~~p~~~~~KVvIIdev~~Lt~------------~a~naLLk~LEepp------~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 103 DIRELRENVK-YLPSRSRYKIFIIDEVHMLST------------NAFNALLKTLEEPP------PHVKFIFATTEPHKVP 163 (576)
T ss_pred HHHHHHHHHH-hccccCCceEEEEEChhhCCH------------HHHHHHHHHHHcCC------CCeEEEEEeCChhhhh
Confidence 5666666664 345 3999999998742 13578998888754 3477778888999999
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
+.+++|. ..+.|..++.++-...++..++..++. .+..+..|+..+.| +.+++.+++..+.
T Consensus 164 ~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~Ldqli 225 (576)
T PRK14965 164 ITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLSTLDQVL 225 (576)
T ss_pred HHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999876 478888888888888888877654433 34457778888876 6677777666544
No 105
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.96 E-value=0.0001 Score=61.11 Aligned_cols=104 Identities=20% Similarity=0.158 Sum_probs=71.9
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCH
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNE 95 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~ 95 (202)
+.+|+|||+|.+... ....|+..++..... ..+|.++|.+..+.+++.+|+. .++++.|+.
T Consensus 103 ~~vviiDe~~~l~~~------------~~~~L~~~le~~~~~------~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~ 163 (319)
T PRK00440 103 FKIIFLDEADNLTSD------------AQQALRRTMEMYSQN------TRFILSCNYSSKIIDPIQSRCA-VFRFSPLKK 163 (319)
T ss_pred ceEEEEeCcccCCHH------------HHHHHHHHHhcCCCC------CeEEEEeCCccccchhHHHHhh-eeeeCCCCH
Confidence 569999999988421 134566666654432 3455677888888888888876 589999999
Q ss_pred HHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 96 WARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 96 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
++...+++.++.+.... ++..+..++..+.| +.+.+.+.++.+
T Consensus 164 ~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~ 207 (319)
T PRK00440 164 EAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAA 207 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 99999999998655432 34467888888765 444444444443
No 106
>PLN03025 replication factor C subunit; Provisional
Probab=97.94 E-value=0.00047 Score=57.58 Aligned_cols=103 Identities=19% Similarity=0.134 Sum_probs=72.0
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
.+.|++|||+|.+... ..+.|+..|+..... ..+|.+||.++.+.+++++|. ..+.|+.|+
T Consensus 99 ~~kviiiDE~d~lt~~------------aq~aL~~~lE~~~~~------t~~il~~n~~~~i~~~L~SRc-~~i~f~~l~ 159 (319)
T PLN03025 99 RHKIVILDEADSMTSG------------AQQALRRTMEIYSNT------TRFALACNTSSKIIEPIQSRC-AIVRFSRLS 159 (319)
T ss_pred CeEEEEEechhhcCHH------------HHHHHHHHHhcccCC------ceEEEEeCCccccchhHHHhh-hcccCCCCC
Confidence 3579999999998432 135566666654432 346668888899999999986 589999999
Q ss_pred HHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHH
Q psy3540 95 EWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLAR 137 (202)
Q Consensus 95 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~ 137 (202)
.++....++..++..++. ++..+..++..+.| +.+.+-+.++
T Consensus 160 ~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 160 DQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 999999999888654332 24457778877654 4444444444
No 107
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.92 E-value=0.0004 Score=59.60 Aligned_cols=117 Identities=16% Similarity=0.267 Sum_probs=77.9
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc---HHHHhccc--ceee
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID---EAFRRRFE--KRVY 89 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld---~al~rrf~--~~i~ 89 (202)
+-.+++||+++.+.++... -.+|...++.+... ++-+|+.+-..|..+. +.|++||. ..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~----------qeefFh~FN~l~~~----~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~ 240 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERT----------QEEFFHTFNALLEN----GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVE 240 (408)
T ss_pred ccCeeeechHhHhcCChhH----------HHHHHHHHHHHHhc----CCEEEEEcCCCchhhccccHHHHHHHhceeEEe
Confidence 4568999999999876421 22333334444433 3346666766777766 78888885 6788
Q ss_pred ecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy3540 90 IPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRR 146 (202)
Q Consensus 90 i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~ 146 (202)
+..|+.+.|..||+......++. ++.-+..+|...+ =+.++|..++.+....+...
T Consensus 241 I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~ 297 (408)
T COG0593 241 IEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFT 297 (408)
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhc
Confidence 88999999999999977544433 3334667777765 36777777776665555443
No 108
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.91 E-value=0.00033 Score=64.55 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=74.4
Q ss_pred HHHHHHHHhhh-----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecC-CC-CC
Q psy3540 3 EVQRTNVPSNS-----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATN-HP-WD 75 (202)
Q Consensus 3 ~i~~~F~~A~~-----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn-~~-~~ 75 (202)
.++..+..+.. ....||||||+|.+... ....|+..++. ..+++|++|+ .| ..
T Consensus 92 dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~------------qQdaLL~~lE~--------g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 92 DLRAEVDRAKERLERHGKRTILFIDEVHRFNKA------------QQDALLPWVEN--------GTITLIGATTENPYFE 151 (725)
T ss_pred HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH------------HHHHHHHHhcC--------ceEEEEEecCCChHhh
Confidence 34455555421 24679999999987421 12345544432 3466666553 33 56
Q ss_pred ccHHHHhcccceeeecCCCHHHHHHHHHHHhcC-------cccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 76 IDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEG-------VVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 76 ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~-------~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
+++++++|. ..+.++.++.+++..+++..+.. ..+. ++.-+..|+..+.| +.+.+.++++.+.
T Consensus 152 l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 152 VNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred hhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 899999885 57999999999999999998862 1111 23346778877744 5666666666554
No 109
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00026 Score=62.51 Aligned_cols=117 Identities=16% Similarity=0.134 Sum_probs=81.2
Q ss_pred HHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 4 VQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 4 i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++.+...+.. ..+-|++|||+|.+.. ...+.|+..++.... .+++|.+|+.++.+.++
T Consensus 104 ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~------------~a~naLLk~LEepp~------~~v~Il~tt~~~kl~~t 165 (486)
T PRK14953 104 IRALRDAVSYTPIKGKYKVYIIDEAHMLTK------------EAFNALLKTLEEPPP------RTIFILCTTEYDKIPPT 165 (486)
T ss_pred HHHHHHHHHhCcccCCeeEEEEEChhhcCH------------HHHHHHHHHHhcCCC------CeEEEEEECCHHHHHHH
Confidence 4555444432 2346999999998732 134678877776432 35555566778899999
Q ss_pred HHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 80 FRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 80 l~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
+++|+. .+.++.|+.++....++..++..++. .+..+..|+..+.| +.+++.++++.+.
T Consensus 166 I~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 166 ILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLDQAS 225 (486)
T ss_pred HHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 998875 78999999999999999988765543 23346777877765 5677777776664
No 110
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00091 Score=59.68 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=85.2
Q ss_pred HHHHHHHHhhhCCC-----eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 3 EVQRTNVPSNSYRV-----STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~P-----~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
.+|++...+. +.| .|++|||+|.+.. ...+.||..|+.... .+++|.+|+.++.+.
T Consensus 103 ~ir~l~~~~~-~~p~~~~~kVvIIDEad~ls~------------~a~naLLK~LEepp~------~~~fIL~t~d~~kil 163 (527)
T PRK14969 103 AMRELLDNAQ-YAPTRGRFKVYIIDEVHMLSK------------SAFNAMLKTLEEPPE------HVKFILATTDPQKIP 163 (527)
T ss_pred HHHHHHHHHh-hCcccCCceEEEEcCcccCCH------------HHHHHHHHHHhCCCC------CEEEEEEeCChhhCc
Confidence 4666666664 344 4999999998732 235788888887543 467777778899999
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~ 141 (202)
+.+++|. ..++|+.|+.++-...+...++..++. .+..+..|+..+.| +.+++-+++..+..
T Consensus 164 ~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~lldqai~ 226 (527)
T PRK14969 164 VTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALSLLDQAIA 226 (527)
T ss_pred hhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 8888876 788999999999888888887544333 23456777877765 67777788776653
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.0003 Score=63.48 Aligned_cols=118 Identities=16% Similarity=0.103 Sum_probs=85.7
Q ss_pred HHHHHHHHhhhC----CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNSY----RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~~----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.||++...++.. ..-|++|||+|.+.. ...+.||..|+.... .+++|.+|+.++.+.+
T Consensus 116 ~IReIie~~~~~P~~a~~KVvIIDEad~Ls~------------~a~naLLKtLEePp~------~~~fIl~tte~~kll~ 177 (598)
T PRK09111 116 DIREIIESVRYRPVSARYKVYIIDEVHMLST------------AAFNALLKTLEEPPP------HVKFIFATTEIRKVPV 177 (598)
T ss_pred HHHHHHHHHHhchhcCCcEEEEEEChHhCCH------------HHHHHHHHHHHhCCC------CeEEEEEeCChhhhhH
Confidence 467777666432 246999999998832 236788888887544 3566667788888999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
.+++|+ ..+.|..|+.++-...++..+++.... .+..+..|+..+.| +.+++.+++..+.
T Consensus 178 tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldkli 238 (598)
T PRK09111 178 TVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQAI 238 (598)
T ss_pred HHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 998887 579999999999999998888654433 23456777888776 7788878777654
No 112
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.87 E-value=0.00036 Score=60.31 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=89.2
Q ss_pred hCCCeEEEEccccccccccCCCCc--chHHHHHHHHHHHHHhCCCC-------CCCCCceEEEEEecCCCC---------
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSE--HEASRRFKAELLIQMDGLNS-------SLYEDKIIMILAATNHPW--------- 74 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~--~~~~~~~~~~ll~~ld~~~~-------~~~~~~~v~viatTn~~~--------- 74 (202)
...++||||||||.+..++.+.+. ......+.+.||..|++-.. ...+....++|.|+|-..
T Consensus 171 ~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~ 250 (412)
T PRK05342 171 KAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGL 250 (412)
T ss_pred HcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCc
Confidence 357899999999999876422111 11113477889999986421 101123456666666511
Q ss_pred -------------------------------------------CccHHHHhcccceeeecCCCHHHHHHHHHH----Hhc
Q psy3540 75 -------------------------------------------DIDEAFRRRFEKRVYIPLPNEWARYQLLTL----CLE 107 (202)
Q Consensus 75 -------------------------------------------~ld~al~rrf~~~i~i~~P~~~~R~~il~~----~l~ 107 (202)
-+.|.++.|++..+.|...+.+....|+.. +++
T Consensus 251 ~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~ 330 (412)
T PRK05342 251 EKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVK 330 (412)
T ss_pred HHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHH
Confidence 034566669999999999999999999973 332
Q ss_pred C---------cccC-CcccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHH
Q psy3540 108 G---------VVID-VNLDFHKISKM--LEGYTGSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 108 ~---------~~~~-~~~~~~~la~~--t~g~s~~dl~~l~~~A~~~a~~~~~ 148 (202)
. +.+. .+--+..||+. ..+|-++-|+.++++.....+.+..
T Consensus 331 q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p 383 (412)
T PRK05342 331 QYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELP 383 (412)
T ss_pred HHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcc
Confidence 1 1111 23346778876 5678899999999999888887654
No 113
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00062 Score=61.20 Aligned_cols=116 Identities=18% Similarity=0.125 Sum_probs=83.6
Q ss_pred HHHHHHHHhhhCCC-----eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 3 EVQRTNVPSNSYRV-----STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~P-----~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
.||.+...+.. .| -|++|||+|.+-. ...+.|+..|+.... .+++|.+|+.+..|.
T Consensus 103 ~IReIi~~~~~-~P~~~~~KVIIIDEad~Lt~------------~A~NaLLKtLEEPp~------~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 103 EIRNIIDNINY-LPTTFKYKVYIIDEAHMLST------------SAWNALLKTLEEPPK------HVVFIFATTEFQKIP 163 (605)
T ss_pred HHHHHHHHHHh-chhhCCcEEEEEechHhCCH------------HHHHHHHHHHHhCCC------cEEEEEECCChHhhh
Confidence 35666665543 33 4999999998832 135788888887543 367777788899999
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
+++++|+. .++++.|+..+....++..+...+.. ++-.+..++..+.| +++++.+++...
T Consensus 164 ~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLekL 224 (605)
T PRK05896 164 LTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQL 224 (605)
T ss_pred HHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHH
Confidence 99999875 78999999999999998888654322 23457778888776 666666666653
No 114
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.86 E-value=0.00017 Score=57.14 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=71.1
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCc---cHHHHhccc--cee
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI---DEAFRRRFE--KRV 88 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~l---d~al~rrf~--~~i 88 (202)
....+|+||+++.+.++. +....|...++.+... ++-+|+++...|..+ ++.+++||. ..+
T Consensus 96 ~~~DlL~iDDi~~l~~~~----------~~q~~lf~l~n~~~~~----~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~ 161 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQ----------RTQEELFHLFNRLIES----GKQLILTSDRPPSELSGLLPDLRSRLSWGLVV 161 (219)
T ss_dssp CTSSEEEEETGGGGTTHH----------HHHHHHHHHHHHHHHT----TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEE
T ss_pred hcCCEEEEecchhhcCch----------HHHHHHHHHHHHHHhh----CCeEEEEeCCCCccccccChhhhhhHhhcchh
Confidence 356799999999986432 1234455555555443 334666666666654 578888885 488
Q ss_pred eecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy3540 89 YIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 89 ~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~ 141 (202)
.+..|+.+.|..|++.......+. ++.-+..|+...++ +.++|..++.+-..
T Consensus 162 ~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 162 ELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp EE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 999999999999999999654443 23346778888754 77888877776543
No 115
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00033 Score=59.44 Aligned_cols=112 Identities=16% Similarity=0.288 Sum_probs=73.2
Q ss_pred ChHHHHHHHHhhhCC----CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecC-CC-C
Q psy3540 1 MREVQRTNVPSNSYR----VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATN-HP-W 74 (202)
Q Consensus 1 ~k~i~~~F~~A~~~~----P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn-~~-~ 74 (202)
.|.|+.+|+.|+... -.|||+|||+.+-... -..||-.|.. +.|++||||. +| -
T Consensus 86 vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q------------QD~lLp~vE~--------G~iilIGATTENPsF 145 (436)
T COG2256 86 VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ------------QDALLPHVEN--------GTIILIGATTENPSF 145 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh------------hhhhhhhhcC--------CeEEEEeccCCCCCe
Confidence 367999999996543 4899999999984321 1235544432 5577776653 34 5
Q ss_pred CccHHHHhcccceeeecCCCHHHHHHHHHHHh--cCcccC------CcccHHHHHHHccCCCHHHHHHHHH
Q psy3540 75 DIDEAFRRRFEKRVYIPLPNEWARYQLLTLCL--EGVVID------VNLDFHKISKMLEGYTGSDIANLAR 137 (202)
Q Consensus 75 ~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l--~~~~~~------~~~~~~~la~~t~g~s~~dl~~l~~ 137 (202)
.|.+||++|. .++.+...+.++-..+++.-+ ...++. .+.-+..|+..+.| |.+.+.+
T Consensus 146 ~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN 211 (436)
T COG2256 146 ELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALN 211 (436)
T ss_pred eecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHH
Confidence 8999999975 578888889999999988844 222222 12235566666554 5544443
No 116
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00032 Score=63.10 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=76.7
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCHH
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNEW 96 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~~ 96 (202)
-|++|||+|.+-. ...+.||..|..... .+++|.+|+.++.|.+++++| ...++|..++.+
T Consensus 120 KVvIIDEah~Lt~------------~A~NALLK~LEEpp~------~~~fIL~tte~~kll~TI~SR-c~~~~F~~l~~~ 180 (584)
T PRK14952 120 RIFIVDEAHMVTT------------AGFNALLKIVEEPPE------HLIFIFATTEPEKVLPTIRSR-THHYPFRLLPPR 180 (584)
T ss_pred eEEEEECCCcCCH------------HHHHHHHHHHhcCCC------CeEEEEEeCChHhhHHHHHHh-ceEEEeeCCCHH
Confidence 4999999999832 146788888887544 477777888889999999998 468999999999
Q ss_pred HHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 97 ARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 97 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
+-...++..+++.+.. .+..+..++..+. -+.+++.++++...
T Consensus 181 ~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-GdlR~aln~Ldql~ 224 (584)
T PRK14952 181 TMRALIARICEQEGVVVDDAVYPLVIRAGG-GSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 9888888888655432 2334555666554 47777777777654
No 117
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00048 Score=58.68 Aligned_cols=171 Identities=19% Similarity=0.216 Sum_probs=99.7
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC---CCccHHHHhcc-cceee
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP---WDIDEAFRRRF-EKRVY 89 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~---~~ld~al~rrf-~~~i~ 89 (202)
..+.||++||+|.|....+ .++-.|+...+.. ..+|.+|+.+|.. +.+|+.+.++| ...|.
T Consensus 122 ~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~------~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~ 186 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG---------EVLYSLLRAPGEN------KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIV 186 (366)
T ss_pred CCeEEEEEcchhhhccccc---------hHHHHHHhhcccc------ceeEEEEEEeccHHHHHHhhhhhhhccCcceee
Confidence 4678999999999987652 2344444443333 2568999999986 47888888865 45578
Q ss_pred ecCCCHHHHHHHHHHHhcCc----ccCCcc-c-HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhh-----
Q psy3540 90 IPLPNEWARYQLLTLCLEGV----VIDVNL-D-FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKE----- 158 (202)
Q Consensus 90 i~~P~~~~R~~il~~~l~~~----~~~~~~-~-~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~----- 158 (202)
||+=+.+|-..|++...... .++.++ + ...++....| ..+---.+|+.|+..|-++.......+....
T Consensus 187 F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 187 FPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 88889999999999888532 122221 1 2334444455 4444556778888877765433222111111
Q ss_pred ----hhhccCCCCCcHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHhC
Q psy3540 159 ----IKQEDIDLPVTEKDFREAIARC-RKSVTAHDLSKYDSWMNEFG 200 (202)
Q Consensus 159 ----~~~~~~~~~it~~df~~Al~~~-~Ps~s~~~~~~~~~~~~~~~ 200 (202)
.......++..+.-+..++... .+..+.+-.+.|.+..+.++
T Consensus 266 ~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~ 312 (366)
T COG1474 266 ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLR 312 (366)
T ss_pred hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhC
Confidence 0111223445555556666555 33333344445555555443
No 118
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.82 E-value=0.0014 Score=57.94 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=76.1
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
.|+|+++.+++.++.. .. ..|.+..|....+... ..++++ +. -..+++.|.+ +-..+.+|+|+
T Consensus 81 ~~~~~vl~d~h~~~~~------~~-~~r~l~~l~~~~~~~~------~~~i~~-~~--~~~~p~el~~-~~~~~~~~lP~ 143 (489)
T CHL00195 81 TPALFLLKDFNRFLND------IS-ISRKLRNLSRILKTQP------KTIIII-AS--ELNIPKELKD-LITVLEFPLPT 143 (489)
T ss_pred CCcEEEEecchhhhcc------hH-HHHHHHHHHHHHHhCC------CEEEEE-cC--CCCCCHHHHh-ceeEEeecCcC
Confidence 3899999999999832 12 2333344444444322 334444 43 2567777775 44688999999
Q ss_pred HHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 95 EWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 95 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
.++...+++.+....... .+.+++.+++.+.|+|-.+++.++..+.
T Consensus 144 ~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~ 190 (489)
T CHL00195 144 ESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKII 190 (489)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999998887643332 3567899999999999999999888753
No 119
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00054 Score=60.74 Aligned_cols=116 Identities=14% Similarity=0.098 Sum_probs=82.3
Q ss_pred HHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 4 VQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 4 i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++++...+.. ..+.||+|||+|.+. ....+.|+..|+... ..+++|.+|+.+..+.+.
T Consensus 101 iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk~LEep~------~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 101 VRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLKTLEEPP------EHVIFILATTEPEKMPPT 162 (504)
T ss_pred HHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHHHHHhCC------CCEEEEEEcCChhhCChH
Confidence 4554444432 246799999998662 124677888877643 346777788899999999
Q ss_pred HHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 80 FRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 80 l~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
+++|+. .+.|..|+.++-...++..+.+.++. .+..+..|+..+.| +.+++.++++.+
T Consensus 163 I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~Lekl 221 (504)
T PRK14963 163 ILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDAESLLERL 221 (504)
T ss_pred HhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 999865 78999999999999999988654443 23457778888775 556666666654
No 120
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.0011 Score=59.95 Aligned_cols=103 Identities=19% Similarity=0.153 Sum_probs=73.9
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
...||+|||+|.+-. ...+.|+..|+... ..+++|++|+.+..+.+.+++|+ ..+.|+.++
T Consensus 119 ~~kVIIIDEad~Lt~------------~a~naLLk~LEEP~------~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs 179 (624)
T PRK14959 119 RYKVFIIDEAHMLTR------------EAFNALLKTLEEPP------ARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLS 179 (624)
T ss_pred CceEEEEEChHhCCH------------HHHHHHHHHhhccC------CCEEEEEecCChhhhhHHHHhhh-hccccCCCC
Confidence 346999999999842 23577888887743 34778888888999999998887 468899999
Q ss_pred HHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHH
Q psy3540 95 EWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLAR 137 (202)
Q Consensus 95 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~ 137 (202)
.++-..+|+..+...... .+..+..|+..+.| +.+++-++..
T Consensus 180 ~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~Al~lLe 222 (624)
T PRK14959 180 EAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDSMSLLG 222 (624)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 999999998887654432 23456777877764 3344444444
No 121
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.79 E-value=0.00056 Score=62.13 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=68.2
Q ss_pred EEEE-EecCCCCCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy3540 64 IMIL-AATNHPWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 64 v~vi-atTn~~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~ 141 (202)
+++| +||+.++.+++++++||. .+.++.++.++...|++..+...... ++.-+..|+..+- .+...-+++..+..
T Consensus 324 ~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~ 400 (615)
T TIGR02903 324 FVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYG 400 (615)
T ss_pred EEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHH
Confidence 4444 566779999999999997 56888899999999999998764322 2333455555542 45555555555554
Q ss_pred HHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 142 MSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 142 ~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
.++.+.... .+......|+.+|+++++..-+
T Consensus 401 ~~~~~~~~~---------~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 401 YALYRAAEA---------GKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHh---------ccCCCCeeECHHHHHHHhCCCc
Confidence 444332200 0011124799999999998754
No 122
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00029 Score=59.72 Aligned_cols=103 Identities=10% Similarity=0.028 Sum_probs=71.4
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
..-|++|||+|.+-. ...+.||..++.... +.++|..|+.|+.+.+.+++|+ ..+.+++|+
T Consensus 141 ~~rVviIDeAd~l~~------------~aanaLLk~LEEpp~------~~~fiLit~~~~~llptIrSRc-~~i~l~pl~ 201 (351)
T PRK09112 141 NWRIVIIDPADDMNR------------NAANAILKTLEEPPA------RALFILISHSSGRLLPTIRSRC-QPISLKPLD 201 (351)
T ss_pred CceEEEEEchhhcCH------------HHHHHHHHHHhcCCC------CceEEEEECChhhccHHHHhhc-cEEEecCCC
Confidence 456999999999832 135778888877443 3456666788999999999988 699999999
Q ss_pred HHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy3540 95 EWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARD 138 (202)
Q Consensus 95 ~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 138 (202)
.++-..+|+.......++ +..+..++..+.|- +....++...
T Consensus 202 ~~~~~~~L~~~~~~~~~~-~~~~~~i~~~s~G~-pr~Al~ll~~ 243 (351)
T PRK09112 202 DDELKKALSHLGSSQGSD-GEITEALLQRSKGS-VRKALLLLNY 243 (351)
T ss_pred HHHHHHHHHHhhcccCCC-HHHHHHHHHHcCCC-HHHHHHHHhc
Confidence 999999998754322222 23356677777664 3333344433
No 123
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.77 E-value=0.00033 Score=59.00 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=56.3
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC------C-CCCCCceEEEEEecCCCC-CccHHHHhcccce
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN------S-SLYEDKIIMILAATNHPW-DIDEAFRRRFEKR 87 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~------~-~~~~~~~v~viatTn~~~-~ld~al~rrf~~~ 87 (202)
..++|+||++.+-+ .+.+.|+..|+.-. + ...-..++++|+|+|-.+ .+.++++.||...
T Consensus 132 ~GvL~lDEi~~L~~------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~ 199 (337)
T TIGR02030 132 RGILYIDEVNLLED------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLH 199 (337)
T ss_pred CCEEEecChHhCCH------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceE
Confidence 46999999998732 24556666664311 0 001124688888888544 6899999999999
Q ss_pred eeecCCCH-HHHHHHHHHHh
Q psy3540 88 VYIPLPNE-WARYQLLTLCL 106 (202)
Q Consensus 88 i~i~~P~~-~~R~~il~~~l 106 (202)
+.++.|.. ++|.+|++...
T Consensus 200 i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 200 AEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred EECCCCCCHHHHHHHHHhhh
Confidence 99999975 89999998743
No 124
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.0024 Score=57.38 Aligned_cols=106 Identities=19% Similarity=0.163 Sum_probs=79.0
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
..-|++|||+|.+-. ...+.||..++... ..+++|.+|+.++.+.+++++|+. .++|..|+
T Consensus 119 ~~KVvIIDEa~~Ls~------------~a~naLLK~LEepp------~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~ 179 (563)
T PRK06647 119 RYRVYIIDEVHMLSN------------SAFNALLKTIEEPP------PYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLS 179 (563)
T ss_pred CCEEEEEEChhhcCH------------HHHHHHHHhhccCC------CCEEEEEecCChHHhHHHHHHhce-EEEecCCC
Confidence 345999999998732 24677888877533 346777777888999999999876 68899999
Q ss_pred HHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 95 EWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 95 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
.++....++..+...... .+..+..|+..+.| +.+++.+++..+.
T Consensus 180 ~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdkli 225 (563)
T PRK06647 180 LEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999998887544332 34457778888877 7888888777654
No 125
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.0033 Score=55.05 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=77.2
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCC
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLP 93 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P 93 (202)
....||+|||+|.+.. ...+.|+..|+... ..+++|.+|+.+..|.+++++|+. .++++.|
T Consensus 120 ~~~kvvIIdead~lt~------------~~~n~LLk~lEep~------~~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l 180 (451)
T PRK06305 120 SRYKIYIIDEVHMLTK------------EAFNSLLKTLEEPP------QHVKFFLATTEIHKIPGTILSRCQ-KMHLKRI 180 (451)
T ss_pred CCCEEEEEecHHhhCH------------HHHHHHHHHhhcCC------CCceEEEEeCChHhcchHHHHhce-EEeCCCC
Confidence 3568999999998842 13577888887743 346777788889999999999874 6899999
Q ss_pred CHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 94 NEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 94 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
+.++-...++..+++.+.. .+..+..|+..+.| +.+++.++++..
T Consensus 181 ~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Lekl 226 (451)
T PRK06305 181 PEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYDYV 226 (451)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999888888877654432 23457778888765 666666665544
No 126
>KOG2004|consensus
Probab=97.70 E-value=0.00021 Score=64.64 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=83.2
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCC---------CCCceEEEEEecCCCCC
Q psy3540 5 QRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL---------YEDKIIMILAATNHPWD 75 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~---------~~~~~v~viatTn~~~~ 75 (202)
=++.+..+-..| +++|||+|.++. +..++. .++||..||--.+.. -.-.+|++|+|+|..+.
T Consensus 496 Iq~LK~v~t~NP-liLiDEvDKlG~--g~qGDP------asALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idt 566 (906)
T KOG2004|consen 496 IQCLKKVKTENP-LILIDEVDKLGS--GHQGDP------ASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDT 566 (906)
T ss_pred HHHHHhhCCCCc-eEEeehhhhhCC--CCCCCh------HHHHHHhcChhhccchhhhccccccchhheEEEEecccccc
Confidence 345566677788 889999999983 222322 356666665332221 11256999999999999
Q ss_pred ccHHHHhcccceeeecCCCHHHHHHHHHHHhc-----CcccCC-cccHHHHH--HHccCCC--------HHHHHHHHHHH
Q psy3540 76 IDEAFRRRFEKRVYIPLPNEWARYQLLTLCLE-----GVVIDV-NLDFHKIS--KMLEGYT--------GSDIANLARDA 139 (202)
Q Consensus 76 ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~-----~~~~~~-~~~~~~la--~~t~g~s--------~~dl~~l~~~A 139 (202)
|+++|+.|.+ .|+++==..++...|-+.||- ..++.+ .+++.+-| ...+.|+ -..|.++|+.+
T Consensus 567 IP~pLlDRME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~ 645 (906)
T KOG2004|consen 567 IPPPLLDRME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKV 645 (906)
T ss_pred CChhhhhhhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999984 667666677888889888882 223331 22322211 1111122 34577777777
Q ss_pred HHHHHHHH
Q psy3540 140 AMMSIRRK 147 (202)
Q Consensus 140 ~~~a~~~~ 147 (202)
+..-++..
T Consensus 646 Al~vv~~~ 653 (906)
T KOG2004|consen 646 ALKVVEGE 653 (906)
T ss_pred HHHHHHhh
Confidence 76666554
No 127
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0046 Score=56.24 Aligned_cols=117 Identities=17% Similarity=0.100 Sum_probs=80.0
Q ss_pred hHHHHHHHHhhhC----CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 2 REVQRTNVPSNSY----RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 2 k~i~~~F~~A~~~----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
..||++...+... ..-|++|||+|.+-. ...+.||..|+.-. ..+++|++|++++.+-
T Consensus 104 d~IReii~~a~~~p~~~~~KViIIDEad~Lt~------------~a~naLLK~LEePp------~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 104 DNIRELIERAQFAPVQARWKVYVIDECHMLST------------AAFNALLKTLEEPP------PRVVFVLATTDPQRVL 165 (620)
T ss_pred HHHHHHHHHHhhChhcCCceEEEEECccccCH------------HHHHHHHHHHhcCC------cCeEEEEEeCChhhhh
Confidence 3678888777532 235999999998832 24678898888643 3467777788899999
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHH
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARD 138 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~ 138 (202)
+.+++|+ ..++|+.|+.++-...+...+.+.... ....+..++..+.| +.+++.++++.
T Consensus 166 pTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~~lLek 225 (620)
T PRK14948 166 PTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAESLLDQ 225 (620)
T ss_pred HHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 9999886 567888888877777776666543322 22347778888776 34555555554
No 128
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.66 E-value=0.0011 Score=61.58 Aligned_cols=125 Identities=11% Similarity=0.113 Sum_probs=87.3
Q ss_pred hhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCC-CCCCC----CCceEEEEEecCCC-------------
Q psy3540 12 NSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL-NSSLY----EDKIIMILAATNHP------------- 73 (202)
Q Consensus 12 ~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-~~~~~----~~~~v~viatTn~~------------- 73 (202)
+....|||||||+|.+- ..+.+.|++.||.- -.... .-.++++|+|||.-
T Consensus 554 ~~~p~sVlllDEieka~------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~ 621 (758)
T PRK11034 554 IKHPHAVLLLDEIEKAH------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIH 621 (758)
T ss_pred HhCCCcEEEeccHhhhh------------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCccc
Confidence 44556999999999983 23678888888732 11100 11467899999932
Q ss_pred ------------CCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCc---------ccC-CcccHHHHHHHc--cCCCH
Q psy3540 74 ------------WDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGV---------VID-VNLDFHKISKML--EGYTG 129 (202)
Q Consensus 74 ------------~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~---------~~~-~~~~~~~la~~t--~g~s~ 129 (202)
..+.|.++.|+|.++.|+..+.++...|+..++... .+. ++--++.|+... ..|-+
T Consensus 622 ~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GA 701 (758)
T PRK11034 622 QDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGA 701 (758)
T ss_pred chhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCC
Confidence 125578888999999999999999999998887521 111 222356677543 45668
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3540 130 SDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 130 ~dl~~l~~~A~~~a~~~~~ 148 (202)
+.|+.++++-...++.+..
T Consensus 702 R~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 702 RPMARVIQDNLKKPLANEL 720 (758)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 8999999998888877654
No 129
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.001 Score=59.48 Aligned_cols=117 Identities=17% Similarity=0.106 Sum_probs=82.3
Q ss_pred HHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 4 VQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 4 i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++.+.+.+.. ...-|++|||+|.+.. ...+.||..|+...+ .+++|++|+.+..+.+.
T Consensus 104 ir~ii~~~~~~p~~g~~kViIIDEa~~ls~------------~a~naLLK~LEepp~------~v~fIL~Ttd~~kil~t 165 (546)
T PRK14957 104 TKEILDNIQYMPSQGRYKVYLIDEVHMLSK------------QSFNALLKTLEEPPE------YVKFILATTDYHKIPVT 165 (546)
T ss_pred HHHHHHHHHhhhhcCCcEEEEEechhhccH------------HHHHHHHHHHhcCCC------CceEEEEECChhhhhhh
Confidence 4555554432 1345999999988732 246788888887543 35666667778999999
Q ss_pred HHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 80 FRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 80 l~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
+++|. ..++|..++.++-...++..+...++. .+..+..++..+.| +.+++-+++..+.
T Consensus 166 I~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~alnlLek~i 225 (546)
T PRK14957 166 ILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRDALSLLDQAI 225 (546)
T ss_pred HHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 88887 789999999999888888877654433 33456777877754 6777777777655
No 130
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.62 E-value=0.00072 Score=58.38 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=89.6
Q ss_pred hCCCeEEEEccccccccccCCCCcc-h-HHHHHHHHHHHHHhCCCCC-------CCCCceEEEEEecCCCC---------
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEH-E-ASRRFKAELLIQMDGLNSS-------LYEDKIIMILAATNHPW--------- 74 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~-~-~~~~~~~~ll~~ld~~~~~-------~~~~~~v~viatTn~~~--------- 74 (202)
..+|+||||||+|.+..++.+..-. . ....+.+.||+.|+|.... ..+..+.++|.|+|-..
T Consensus 179 ~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~ 258 (413)
T TIGR00382 179 KAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGL 258 (413)
T ss_pred hcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccCh
Confidence 3478899999999998754321111 1 1124678888888875421 01124567888877610
Q ss_pred -----------------------------------------CccHHHHhcccceeeecCCCHHHHHHHHHHH----hcC-
Q psy3540 75 -----------------------------------------DIDEAFRRRFEKRVYIPLPNEWARYQLLTLC----LEG- 108 (202)
Q Consensus 75 -----------------------------------------~ld~al~rrf~~~i~i~~P~~~~R~~il~~~----l~~- 108 (202)
-+.|+++.|++..+.|...+.+....|+..- ++.
T Consensus 259 ~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~ 338 (413)
T TIGR00382 259 EKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQY 338 (413)
T ss_pred HHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0335556699999999999999999998763 221
Q ss_pred --------cccC-CcccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHH
Q psy3540 109 --------VVID-VNLDFHKISKM--LEGYTGSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 109 --------~~~~-~~~~~~~la~~--t~g~s~~dl~~l~~~A~~~a~~~~~ 148 (202)
+.+. .+--+..||+. ..+|-++-|+.++++..+..+.+..
T Consensus 339 ~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p 389 (413)
T TIGR00382 339 QALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLP 389 (413)
T ss_pred HHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCC
Confidence 1111 22336778876 4678899999999998888777653
No 131
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.55 E-value=0.0014 Score=55.09 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=57.1
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC------CC-CCCCceEEEEEecCCCC-CccHHHHhccccee
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN------SS-LYEDKIIMILAATNHPW-DIDEAFRRRFEKRV 88 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~------~~-~~~~~~v~viatTn~~~-~ld~al~rrf~~~i 88 (202)
.++|+||++.+-+ .+.+.|+..|+.-. +. ..-..++++++|+|-.+ .++++++.||...+
T Consensus 130 GiL~lDEInrl~~------------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v 197 (334)
T PRK13407 130 GYLYIDEVNLLED------------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSV 197 (334)
T ss_pred CeEEecChHhCCH------------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEE
Confidence 4899999998732 35667777775321 00 01125688999888644 58999999999999
Q ss_pred eecCCCH-HHHHHHHHHHh
Q psy3540 89 YIPLPNE-WARYQLLTLCL 106 (202)
Q Consensus 89 ~i~~P~~-~~R~~il~~~l 106 (202)
.++.|.. ++|.+|++...
T Consensus 198 ~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 198 EVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred EcCCCCcHHHHHHHHHHhh
Confidence 9999866 89999998754
No 132
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.54 E-value=0.0011 Score=58.98 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=54.9
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC----CC---CCCCceEEEEEecCCCC-------------C
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN----SS---LYEDKIIMILAATNHPW-------------D 75 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~----~~---~~~~~~v~viatTn~~~-------------~ 75 (202)
..+++|||+|.+-. .....|+..|+.-. .. ..-+.+..||||+|-.+ .
T Consensus 301 ~Gil~iDEi~~l~~------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~ 368 (509)
T smart00350 301 NGVCCIDEFDKMDD------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENID 368 (509)
T ss_pred CCEEEEechhhCCH------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccC
Confidence 45889999998732 23445555554311 00 00124578999999643 6
Q ss_pred ccHHHHhcccceeee-cCCCHHHHHHHHHHHhc
Q psy3540 76 IDEAFRRRFEKRVYI-PLPNEWARYQLLTLCLE 107 (202)
Q Consensus 76 ld~al~rrf~~~i~i-~~P~~~~R~~il~~~l~ 107 (202)
+++++++|||..+.+ ..|+.+...+|.++.+.
T Consensus 369 l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 369 LPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred CChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999999999986555 77999999999988663
No 133
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.54 E-value=0.0016 Score=60.31 Aligned_cols=129 Identities=11% Similarity=0.149 Sum_probs=90.2
Q ss_pred HHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC--CCC---CCCceEEEEEecCCCC--------
Q psy3540 8 NVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN--SSL---YEDKIIMILAATNHPW-------- 74 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~--~~~---~~~~~v~viatTn~~~-------- 74 (202)
....+....+||+|||+|.+-+ .+.+.|++.||+-. ... -.-.+.++|+|||...
T Consensus 546 ~~~~~~~p~~VvllDEieka~~------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~ 613 (731)
T TIGR02639 546 TEAVRKHPHCVLLLDEIEKAHP------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPI 613 (731)
T ss_pred HHHHHhCCCeEEEEechhhcCH------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccC
Confidence 3344555668999999997632 36778888887531 000 0114578889998742
Q ss_pred -----------------CccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcc---------cC-CcccHHHHHHH--cc
Q psy3540 75 -----------------DIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV---------ID-VNLDFHKISKM--LE 125 (202)
Q Consensus 75 -----------------~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~---------~~-~~~~~~~la~~--t~ 125 (202)
.+.|.++.|||.++.|.+.+.++...|++..+.... +. ++.-++.|+.. ..
T Consensus 614 ~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~ 693 (731)
T TIGR02639 614 GFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDE 693 (731)
T ss_pred CcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCc
Confidence 246777789999999999999999999999986321 11 23335667775 46
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy3540 126 GYTGSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 126 g~s~~dl~~l~~~A~~~a~~~~~ 148 (202)
.|-++.|+.+++.-...++....
T Consensus 694 ~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 694 EFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred ccCchHHHHHHHHHhHHHHHHHH
Confidence 78889999999988888876544
No 134
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.0062 Score=53.91 Aligned_cols=119 Identities=20% Similarity=0.208 Sum_probs=89.4
Q ss_pred HHHHHHHHhhhCCC-----eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 3 EVQRTNVPSNSYRV-----STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~P-----~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
.||++-+.+. +.| -|.+|||++-|.. ...|.||+.+..= ...|++|.+|..|..|+
T Consensus 103 diR~i~e~v~-y~P~~~ryKVyiIDEvHMLS~------------~afNALLKTLEEP------P~hV~FIlATTe~~Kip 163 (515)
T COG2812 103 DIREIIEKVN-YAPSEGRYKVYIIDEVHMLSK------------QAFNALLKTLEEP------PSHVKFILATTEPQKIP 163 (515)
T ss_pred HHHHHHHHhc-cCCccccceEEEEecHHhhhH------------HHHHHHhcccccC------ccCeEEEEecCCcCcCc
Confidence 4666666664 444 4999999988732 3478888776653 35688888888999999
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCcccCC-cccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDV-NLDFHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~-~~~~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
+.+++|. ..+.|..-+.++-...|...+.+..+.- +--+.-+|+..+| +.+|...+...|...
T Consensus 164 ~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i~~ 227 (515)
T COG2812 164 NTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAIAF 227 (515)
T ss_pred hhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHHHc
Confidence 9999965 4566778888899999999997655553 3347778888887 778888888887655
No 135
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.48 E-value=0.0012 Score=53.65 Aligned_cols=79 Identities=13% Similarity=0.076 Sum_probs=55.2
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC----CCC------CCCceEEEEEecCCCC-----CccHH
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN----SSL------YEDKIIMILAATNHPW-----DIDEA 79 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~----~~~------~~~~~v~viatTn~~~-----~ld~a 79 (202)
.+.+++|||+|.+-+ .+.+.|+..|+.-. +.. ....++.||+|+|... .++++
T Consensus 105 ~g~~lllDEi~r~~~------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~a 172 (262)
T TIGR02640 105 EGFTLVYDEFTRSKP------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDA 172 (262)
T ss_pred cCCEEEEcchhhCCH------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHH
Confidence 457999999998522 23455555554311 000 0113567899999753 66899
Q ss_pred HHhcccceeeecCCCHHHHHHHHHHHh
Q psy3540 80 FRRRFEKRVYIPLPNEWARYQLLTLCL 106 (202)
Q Consensus 80 l~rrf~~~i~i~~P~~~~R~~il~~~l 106 (202)
+++|| ..++++.|+.++-.+|++...
T Consensus 173 L~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 173 LLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred HHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 99998 689999999999999998875
No 136
>KOG0741|consensus
Probab=97.48 E-value=0.00087 Score=58.93 Aligned_cols=96 Identities=14% Similarity=0.183 Sum_probs=69.4
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH-HHH
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE-AFR 81 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~-al~ 81 (202)
.|+++|.-|+...-+||++|+++.|..=- .-....++-++..|+..+...... .++.+|++||+..+-|-. .+.
T Consensus 586 ~i~k~F~DAYkS~lsiivvDdiErLiD~v--pIGPRfSN~vlQaL~VllK~~ppk---g~kLli~~TTS~~~vL~~m~i~ 660 (744)
T KOG0741|consen 586 HIKKIFEDAYKSPLSIIVVDDIERLLDYV--PIGPRFSNLVLQALLVLLKKQPPK---GRKLLIFGTTSRREVLQEMGIL 660 (744)
T ss_pred HHHHHHHHhhcCcceEEEEcchhhhhccc--ccCchhhHHHHHHHHHHhccCCCC---CceEEEEecccHHHHHHHcCHH
Confidence 58899999999888999999999987321 112234556777777777776553 578999999998766654 445
Q ss_pred hcccceeeecCCCH-HHHHHHHH
Q psy3540 82 RRFEKRVYIPLPNE-WARYQLLT 103 (202)
Q Consensus 82 rrf~~~i~i~~P~~-~~R~~il~ 103 (202)
.+|+..+++|.... ++-..++.
T Consensus 661 ~~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 661 DCFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred HhhhheeecCccCchHHHHHHHH
Confidence 59999999987644 44444443
No 137
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.48 E-value=0.0046 Score=49.58 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=68.8
Q ss_pred hHHHHHHHHhhh-CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH-
Q psy3540 2 REVQRTNVPSNS-YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA- 79 (202)
Q Consensus 2 k~i~~~F~~A~~-~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a- 79 (202)
..|-.++...+. -.+-|||+|++- |.. ++. --..|...|||--.. ...+|++.||+|+-..+...
T Consensus 92 ~~l~~l~~~l~~~~~kFIlf~DDLs--Fe~----~d~-----~yk~LKs~LeGgle~--~P~NvliyATSNRRHLv~E~~ 158 (249)
T PF05673_consen 92 GDLPELLDLLRDRPYKFILFCDDLS--FEE----GDT-----EYKALKSVLEGGLEA--RPDNVLIYATSNRRHLVPESF 158 (249)
T ss_pred ccHHHHHHHHhcCCCCEEEEecCCC--CCC----CcH-----HHHHHHHHhcCcccc--CCCcEEEEEecchhhccchhh
Confidence 345666776653 357899999753 221 111 135677777876554 46889999999985444331
Q ss_pred ----------------------HHhcccceeeecCCCHHHHHHHHHHHhcCcccC
Q psy3540 80 ----------------------FRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID 112 (202)
Q Consensus 80 ----------------------l~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~ 112 (202)
|-.||...+.|..|++++-.+|++.+++...+.
T Consensus 159 ~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 159 SDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred hhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 222999999999999999999999999766544
No 138
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.45 E-value=0.0012 Score=55.08 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=57.7
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhC--------CCCCCCCCceEEEEEecCCCC-----------
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG--------LNSSLYEDKIIMILAATNHPW----------- 74 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~--------~~~~~~~~~~v~viatTn~~~----------- 74 (202)
..++++++||+|..-+ .+.+.|...++. ..........+.||||+|..+
T Consensus 133 ~~g~illlDEin~a~p------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt 200 (327)
T TIGR01650 133 QHNVALCFDEYDAGRP------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGT 200 (327)
T ss_pred hCCeEEEechhhccCH------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeee
Confidence 4678999999998622 123333333332 111111334688999999765
Q ss_pred -CccHHHHhcccceeeecCCCHHHHHHHHHHHhcC
Q psy3540 75 -DIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEG 108 (202)
Q Consensus 75 -~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~ 108 (202)
.+++|.+.||-.++.++.|+.+.=.+|+.....+
T Consensus 201 ~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 201 QQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred ecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccC
Confidence 4579999999999999999999999998776543
No 139
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00039 Score=63.91 Aligned_cols=97 Identities=16% Similarity=0.177 Sum_probs=68.4
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-----Cc
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-----DI 76 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-----~l 76 (202)
+.++.+.+..+...+.|+||||++.|.+..+..++... ..|-|.-.+-. ..+-+||+|..-+ .=
T Consensus 249 eRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D---AaNiLKPaLAR--------GeL~~IGATT~~EYRk~iEK 317 (786)
T COG0542 249 ERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD---AANLLKPALAR--------GELRCIGATTLDEYRKYIEK 317 (786)
T ss_pred HHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc---hhhhhHHHHhc--------CCeEEEEeccHHHHHHHhhh
Confidence 45778888888888999999999999987644332111 12222222211 4466778887533 45
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHHHHHhcCcc
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV 110 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~ 110 (202)
|+||-|||. .|.+.-|+.++-..||+.+-.++.
T Consensus 318 D~AL~RRFQ-~V~V~EPs~e~ti~ILrGlk~~yE 350 (786)
T COG0542 318 DAALERRFQ-KVLVDEPSVEDTIAILRGLKERYE 350 (786)
T ss_pred chHHHhcCc-eeeCCCCCHHHHHHHHHHHHHHHH
Confidence 899999995 788999999999999998876543
No 140
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.0098 Score=48.67 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=82.9
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC--------CC----CCceEEEEEecCCCCCccHHHHhc
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS--------LY----EDKIIMILAATNHPWDIDEAFRRR 83 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~--------~~----~~~~v~viatTn~~~~ld~al~rr 83 (202)
-.|+|||||+.+.+.- -..|.-.|+.+.=. ++ .-.+.-+||+|.+...|...|+.|
T Consensus 104 ~DVLFIDEIHrl~~~v------------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdR 171 (332)
T COG2255 104 GDVLFIDEIHRLSPAV------------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDR 171 (332)
T ss_pred CCeEEEehhhhcChhH------------HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHh
Confidence 3799999999985421 22334444443211 00 125688999999999999999999
Q ss_pred ccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy3540 84 FEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIR 145 (202)
Q Consensus 84 f~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~ 145 (202)
|.....+..=+.++-..|++...+.+.+. .+....++|+++.| ||+=--.|+++..-.|.-
T Consensus 172 FGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V 233 (332)
T COG2255 172 FGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQV 233 (332)
T ss_pred cCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888766554 23456789999888 555544555555555543
No 141
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.45 E-value=0.00056 Score=59.40 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=49.1
Q ss_pred HHHHHhhhC--CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC----------------CCCCCCceEEEE
Q psy3540 6 RTNVPSNSY--RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN----------------SSLYEDKIIMIL 67 (202)
Q Consensus 6 ~~F~~A~~~--~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~~~~~v~vi 67 (202)
++...|+.. .|+||+|||++.--.. ++..+++..|+.-. +...-..++.+|
T Consensus 261 ~~~~~A~~~p~~~~vliIDEINRani~-----------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~II 329 (459)
T PRK11331 261 NFCQQAKEQPEKKYVFIIDEINRANLS-----------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYII 329 (459)
T ss_pred HHHHHHHhcccCCcEEEEehhhccCHH-----------HhhhhhhhhccccccccccceeeeccccccccccCCCCeEEE
Confidence 445666653 5899999999875322 24444454444210 011223789999
Q ss_pred EecCCCC----CccHHHHhcccceeeecC
Q psy3540 68 AATNHPW----DIDEAFRRRFEKRVYIPL 92 (202)
Q Consensus 68 atTn~~~----~ld~al~rrf~~~i~i~~ 92 (202)
||+|..+ .+|.|++|||.. |++.+
T Consensus 330 gTMNt~Drs~~~lD~AlrRRF~f-i~i~p 357 (459)
T PRK11331 330 GLMNTADRSLAVVDYALRRRFSF-IDIEP 357 (459)
T ss_pred EecCccccchhhccHHHHhhhhe-EEecC
Confidence 9999988 899999999954 55553
No 142
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0012 Score=55.48 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=71.6
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.||++-+.+.. ...-|++||++|.+-. ...|.||+.|+.-. .++++|.+|++++.|.|
T Consensus 90 ~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~------------~aaNaLLK~LEEPp------~~~~fiL~t~~~~~ll~ 151 (328)
T PRK05707 90 QVRELVSFVVQTAQLGGRKVVLIEPAEAMNR------------NAANALLKSLEEPS------GDTVLLLISHQPSRLLP 151 (328)
T ss_pred HHHHHHHHHhhccccCCCeEEEECChhhCCH------------HHHHHHHHHHhCCC------CCeEEEEEECChhhCcH
Confidence 45555555432 2345889999999843 24688999888744 44788899999999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCC
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGY 127 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~ 127 (202)
.+++|... +.|+.|+.++-...|...... ..+.+...++..+.|-
T Consensus 152 TI~SRc~~-~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 152 TIKSRCQQ-QACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGS 196 (328)
T ss_pred HHHhhcee-eeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCC
Confidence 99998765 899999998888777765421 1223344555565553
No 143
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.40 E-value=0.0033 Score=53.19 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=56.4
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-------CCCCCCceEEEEEecCCCC-CccHHHHhcccce
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-------SSLYEDKIIMILAATNHPW-DIDEAFRRRFEKR 87 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-------~~~~~~~~v~viatTn~~~-~ld~al~rrf~~~ 87 (202)
-.+||+||++.+-+ .+.+.|+..|+.-. ....-..++++|+|.|-.+ .+.+++..||...
T Consensus 145 ~GiL~lDEInrL~~------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~ 212 (350)
T CHL00081 145 RGILYVDEVNLLDD------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMH 212 (350)
T ss_pred CCEEEecChHhCCH------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCce
Confidence 46999999998743 23445666664311 0001235688888777544 5999999999999
Q ss_pred eeecCCC-HHHHHHHHHHHh
Q psy3540 88 VYIPLPN-EWARYQLLTLCL 106 (202)
Q Consensus 88 i~i~~P~-~~~R~~il~~~l 106 (202)
+.+..|+ .+.|.+|++...
T Consensus 213 i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 213 AEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred eecCCCCChHHHHHHHHhhh
Confidence 9999997 699999998864
No 144
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0021 Score=58.18 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=75.3
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCH
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNE 95 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~ 95 (202)
.-||+|||+|.+.. ...+.||..|+.... .+++|.+|+.++.+.+.+++|+. .++|+.++.
T Consensus 121 ~kVvIIDEa~~L~~------------~a~naLLk~LEepp~------~tv~Il~t~~~~kll~tI~SR~~-~i~f~~l~~ 181 (585)
T PRK14950 121 YKVYIIDEVHMLST------------AAFNALLKTLEEPPP------HAIFILATTEVHKVPATILSRCQ-RFDFHRHSV 181 (585)
T ss_pred eEEEEEeChHhCCH------------HHHHHHHHHHhcCCC------CeEEEEEeCChhhhhHHHHhccc-eeeCCCCCH
Confidence 45999999998732 235678888877543 35666667778888888888764 688999999
Q ss_pred HHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 96 WARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 96 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
.+-..+++..+...++. .+..+..|+..+.| +..++.+.++..
T Consensus 182 ~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~LekL 225 (585)
T PRK14950 182 ADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQQL 225 (585)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 99888888887654432 23347788888876 777777777654
No 145
>KOG2028|consensus
Probab=97.39 E-value=0.0026 Score=53.79 Aligned_cols=145 Identities=14% Similarity=0.211 Sum_probs=87.7
Q ss_pred hHHHHHHHHhhhC-----CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC--CC
Q psy3540 2 REVQRTNVPSNSY-----RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH--PW 74 (202)
Q Consensus 2 k~i~~~F~~A~~~-----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~--~~ 74 (202)
+.+|.+|+.|+.. ...|||||||..+-...+ ..||-.+ . ++.|.+||+|.. .-
T Consensus 204 ~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ------------D~fLP~V---E-----~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 204 NDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ------------DTFLPHV---E-----NGDITLIGATTENPSF 263 (554)
T ss_pred HHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh------------hccccee---c-----cCceEEEecccCCCcc
Confidence 4589999999753 578999999999743221 1233221 1 255777776643 44
Q ss_pred CccHHHHhcccceeeecCCCHHHHHHHHHHHhc----------CcccC----CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 75 DIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLE----------GVVID----VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 75 ~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~----------~~~~~----~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
.+..+|++|. .++.+...+...-..||..-+. .++.. .+.-++.||..++|=.-+-|-.|=-.+.
T Consensus 264 qln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~ 342 (554)
T KOG2028|consen 264 QLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLS 342 (554)
T ss_pred chhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 7889999976 4666677777888888877442 11111 1223778899988866555543322222
Q ss_pred HHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 141 MMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 141 ~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
+.+.+.... ...+++.+|..++|..--
T Consensus 343 m~~tr~g~~--------------~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 343 MFCTRSGQS--------------SRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HHHhhcCCc--------------ccceecHHHHHHHHhhcc
Confidence 222222111 123788888888887643
No 146
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.38 E-value=0.0012 Score=52.29 Aligned_cols=111 Identities=18% Similarity=0.143 Sum_probs=71.6
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCC-------CCceEEEEEecCCCCCccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLY-------EDKIIMILAATNHPWDIDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~-------~~~~v~viatTn~~~~ld~al~r 82 (202)
...|||||||+.+-. .+-..|+..|+... +... +-.+..+||||.+...|.+.++.
T Consensus 101 ~~~ILFIDEIHRlnk------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd 168 (233)
T PF05496_consen 101 EGDILFIDEIHRLNK------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD 168 (233)
T ss_dssp TT-EEEECTCCC--H------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT
T ss_pred CCcEEEEechhhccH------------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh
Confidence 457999999999832 23345677776533 1100 11458899999999999999999
Q ss_pred cccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHH
Q psy3540 83 RFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARD 138 (202)
Q Consensus 83 rf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~ 138 (202)
||.....+..=+.++-..|++.......+. .+.-..++|.++.| +|+---+++++
T Consensus 169 RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 169 RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 999999998889999999988777655544 23346789999987 55544444443
No 147
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.018 Score=52.41 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=82.4
Q ss_pred HHHHHHHHhhhCCC-----eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 3 EVQRTNVPSNSYRV-----STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~P-----~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
.|+.+...+.. .| -|++|||+|.+.. ...+.|+..|+.... ..++|.+|+.+..|-
T Consensus 105 ~Ir~li~~~~~-~P~~~~~KVvIIdea~~Ls~------------~a~naLLK~LEepp~------~tifIL~tt~~~kIl 165 (614)
T PRK14971 105 DIRNLIEQVRI-PPQIGKYKIYIIDEVHMLSQ------------AAFNAFLKTLEEPPS------YAIFILATTEKHKIL 165 (614)
T ss_pred HHHHHHHHHhh-CcccCCcEEEEEECcccCCH------------HHHHHHHHHHhCCCC------CeEEEEEeCCchhch
Confidence 45666655542 33 3999999998832 236788888887554 245666666778999
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
++|++|. ..+.|..++.++-...++..+...++. ....+..|+..+.| +.+++.+++....
T Consensus 166 ~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~al~~Lekl~ 227 (614)
T PRK14971 166 PTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMRDALSIFDQVV 227 (614)
T ss_pred HHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999886 569999999998888888877655443 23357778888754 7777767666544
No 148
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.33 E-value=0.0013 Score=56.62 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=63.2
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCC----CCceEEEEEecC----CCCCccHHHHhcccc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY----EDKIIMILAATN----HPWDIDEAFRRRFEK 86 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~----~~~~v~viatTn----~~~~ld~al~rrf~~ 86 (202)
+-.||||||||.|+.+..+.+.......+-..||..+.|-.-..+ ...+|++|++-. .|++|=|.+.-||..
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 567999999999997653222112223466778888887332211 236788887754 578888889999999
Q ss_pred eeeecCCCHHHHHHHH
Q psy3540 87 RVYIPLPNEWARYQLL 102 (202)
Q Consensus 87 ~i~i~~P~~~~R~~il 102 (202)
.+.+..++.+.-..||
T Consensus 327 ~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 327 RVELQALTTDDFERIL 342 (441)
T ss_pred EEECCCCCHHHHHHHh
Confidence 9999999999888777
No 149
>KOG1514|consensus
Probab=97.33 E-value=0.0039 Score=56.42 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=99.4
Q ss_pred HHHHHHHHhhh-CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 3 EVQRTNVPSNS-YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 3 ~i~~~F~~A~~-~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
.++.-|...+. ..|+||+|||+|.|+... +.++-.|. |=... ++.+++||+..|..+. +.-++
T Consensus 495 ~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~---------QdVlYn~f---dWpt~---~~sKLvvi~IaNTmdl-PEr~l 558 (767)
T KOG1514|consen 495 ALNFRFTVPKPKRSTTVVLIDELDILVTRS---------QDVLYNIF---DWPTL---KNSKLVVIAIANTMDL-PERLL 558 (767)
T ss_pred HHHHhhccCCCCCCCEEEEeccHHHHhccc---------HHHHHHHh---cCCcC---CCCceEEEEecccccC-HHHHh
Confidence 34445554433 358999999999998754 22333333 32222 3467888888887554 44333
Q ss_pred h-----ccc-ceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHhcCC
Q psy3540 82 R-----RFE-KRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDI---ANLARDAAMMSIRRKIMGQT 152 (202)
Q Consensus 82 r-----rf~-~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl---~~l~~~A~~~a~~~~~~~~~ 152 (202)
- |++ ..|.|.+=+..+-.+|+...|.+...-.+ +.-+|+.+--+-.-+|. ..+|++|...|-.+...+.
T Consensus 559 ~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~-~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k- 636 (767)
T KOG1514|consen 559 MNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFEN-KAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGK- 636 (767)
T ss_pred ccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcch-hHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhccccc-
Confidence 2 654 46777777999999999999987632222 23344444433333343 3567777776665543111
Q ss_pred hhHHhhhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy3540 153 PAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW 195 (202)
Q Consensus 153 ~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~ 195 (202)
......|+..|+.+|+.++.-+....-+..+...
T Consensus 637 ---------~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~ 670 (767)
T KOG1514|consen 637 ---------LAVSQLVGILHVMEAINEMLASPYIKALKGLSFL 670 (767)
T ss_pred ---------ccccceeehHHHHHHHHHHhhhhHHHHhcchHHH
Confidence 1112368999999999998766554444444333
No 150
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.32 E-value=0.0028 Score=52.30 Aligned_cols=130 Identities=21% Similarity=0.223 Sum_probs=78.9
Q ss_pred HHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCC--ccHHHHhc
Q psy3540 6 RTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWD--IDEAFRRR 83 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~--ld~al~rr 83 (202)
.+...-+..++-+|+|||+..++..+ ....+.+++ .+..+.+. -.-++|.+||-.-... -|+-+-+|
T Consensus 136 ~~~~llr~~~vrmLIIDE~H~lLaGs-----~~~qr~~Ln----~LK~L~Ne--L~ipiV~vGt~~A~~al~~D~QLa~R 204 (302)
T PF05621_consen 136 QVLRLLRRLGVRMLIIDEFHNLLAGS-----YRKQREFLN----ALKFLGNE--LQIPIVGVGTREAYRALRTDPQLASR 204 (302)
T ss_pred HHHHHHHHcCCcEEEeechHHHhccc-----HHHHHHHHH----HHHHHhhc--cCCCeEEeccHHHHHHhccCHHHHhc
Confidence 45566788899999999999986533 111223333 33333322 1134667776443332 34666679
Q ss_pred ccceeeecCC-CHHHHHHHHHHHhcCcccCC--cc---cH-HHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy3540 84 FEKRVYIPLP-NEWARYQLLTLCLEGVVIDV--NL---DF-HKISKMLEGYTGSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 84 f~~~i~i~~P-~~~~R~~il~~~l~~~~~~~--~~---~~-~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~ 148 (202)
|+. +.+|.- ..++-..++..+-..+++.. ++ ++ ..|-..|+|.+| +|..++..|+..|++...
T Consensus 205 F~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 205 FEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred cCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCC
Confidence 964 444552 33455667777777666542 22 22 466678888775 788899999999986643
No 151
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.017 Score=49.34 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=68.1
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecC
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPL 92 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~ 92 (202)
...|-|++|||+|.+-. ...+.||..+..... ..++|.+|++++.+.+.+++|. ..+.++.
T Consensus 139 ~~~~kVviIDead~m~~------------~aanaLLK~LEepp~------~~~~IL~t~~~~~llpti~SRc-~~i~l~~ 199 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA------------NAANALLKVLEEPPA------RSLFLLVSHAPARLLPTIRSRC-RKLRLRP 199 (365)
T ss_pred cCCCEEEEEechHhcCH------------HHHHHHHHHHhcCCC------CeEEEEEECCchhchHHhhccc-eEEECCC
Confidence 34688999999998732 246788988887543 3577789999999999998886 5889999
Q ss_pred CCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCC
Q psy3540 93 PNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYT 128 (202)
Q Consensus 93 P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s 128 (202)
|+.++-..++...... ..+..+..++..+.|--
T Consensus 200 l~~~~i~~~L~~~~~~---~~~~~~~~l~~~s~Gsp 232 (365)
T PRK07471 200 LAPEDVIDALAAAGPD---LPDDPRAALAALAEGSV 232 (365)
T ss_pred CCHHHHHHHHHHhccc---CCHHHHHHHHHHcCCCH
Confidence 9999998888775422 11222356666666633
No 152
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.28 E-value=0.0042 Score=56.24 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=56.4
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC------C-CCCCCceEEEEEecCCCC---CccHHHHhcccc
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN------S-SLYEDKIIMILAATNHPW---DIDEAFRRRFEK 86 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~------~-~~~~~~~v~viatTn~~~---~ld~al~rrf~~ 86 (202)
.+||+||++.+-+ .+.+.|+..|+.-. + ...-..++.||+|+|..+ .+.++++.||..
T Consensus 86 GvL~lDEi~rl~~------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l 153 (589)
T TIGR02031 86 GVLYVDMANLLDD------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLAL 153 (589)
T ss_pred CcEeccchhhCCH------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccC
Confidence 5899999998743 34667777775321 0 000123578889888765 799999999999
Q ss_pred eeeecC-CCHHHHHHHHHHHh
Q psy3540 87 RVYIPL-PNEWARYQLLTLCL 106 (202)
Q Consensus 87 ~i~i~~-P~~~~R~~il~~~l 106 (202)
++.+.. |+..+|.+|++.++
T Consensus 154 ~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 154 HVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred eeecCCCCCHHHHHHHHHHHH
Confidence 888875 57788999998876
No 153
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0019 Score=55.59 Aligned_cols=105 Identities=17% Similarity=0.092 Sum_probs=72.3
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCHH
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNEW 96 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~~ 96 (202)
-|++|||+|.+.. .-.+.|+..++.... ..++|.+|+.+..+-+++++|.. .++++.++.+
T Consensus 129 kvvIIdea~~l~~------------~~~~~LLk~LEep~~------~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ 189 (397)
T PRK14955 129 RVYIIDEVHMLSI------------AAFNAFLKTLEEPPP------HAIFIFATTELHKIPATIASRCQ-RFNFKRIPLE 189 (397)
T ss_pred EEEEEeChhhCCH------------HHHHHHHHHHhcCCC------CeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHH
Confidence 5899999988842 124567777765433 34555666778899899888774 7889989888
Q ss_pred HHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy3540 97 ARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 97 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~ 141 (202)
+-...++..++..... .+..+..|+..+.| +.+.+.+.++.+..
T Consensus 190 ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~kl~~ 234 (397)
T PRK14955 190 EIQQQLQGICEAEGISVDADALQLIGRKAQG-SMRDAQSILDQVIA 234 (397)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 8888888877544322 24456778888765 66666666665543
No 154
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.001 Score=56.09 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=56.8
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCHH
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNEW 96 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~~ 96 (202)
-|++||++|.+.. ...|.||+.|+.-. .++++|.+|++|+.|.|.+++|. ..+.|++|+.+
T Consensus 134 kV~iI~~ae~m~~------------~AaNaLLKtLEEPp------~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~ 194 (342)
T PRK06964 134 RVVVLYPAEALNV------------AAANALLKTLEEPP------PGTVFLLVSARIDRLLPTILSRC-RQFPMTVPAPE 194 (342)
T ss_pred eEEEEechhhcCH------------HHHHHHHHHhcCCC------cCcEEEEEECChhhCcHHHHhcC-EEEEecCCCHH
Confidence 3788888887732 24689999988633 55889999999999999999988 68999999999
Q ss_pred HHHHHHHHH
Q psy3540 97 ARYQLLTLC 105 (202)
Q Consensus 97 ~R~~il~~~ 105 (202)
+..+.|...
T Consensus 195 ~~~~~L~~~ 203 (342)
T PRK06964 195 AAAAWLAAQ 203 (342)
T ss_pred HHHHHHHHc
Confidence 888888664
No 155
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.23 E-value=0.00034 Score=60.29 Aligned_cols=88 Identities=24% Similarity=0.359 Sum_probs=63.1
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCC----CCceEEEEEec----CCCCCccHHHHhcccc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY----EDKIIMILAAT----NHPWDIDEAFRRRFEK 86 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~----~~~~v~viatT----n~~~~ld~al~rrf~~ 86 (202)
+-.||||||||.|+.+.++.+.......+-..||..+.|-.-+.+ ...+|++|++- ..|+++-|.+..||..
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 567999999999997653322122223466778888887332211 22667888764 3578888999999999
Q ss_pred eeeecCCCHHHHHHHH
Q psy3540 87 RVYIPLPNEWARYQLL 102 (202)
Q Consensus 87 ~i~i~~P~~~~R~~il 102 (202)
.+.+..++.+.-..||
T Consensus 329 ~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 329 RVELDALTEEDFVRIL 344 (443)
T ss_pred EEECCCCCHHHHHHHh
Confidence 9999999999888887
No 156
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.23 E-value=0.0019 Score=46.23 Aligned_cols=71 Identities=31% Similarity=0.508 Sum_probs=47.0
Q ss_pred HHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC--CccHHHHhcccc
Q psy3540 9 VPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW--DIDEAFRRRFEK 86 (202)
Q Consensus 9 ~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~--~ld~al~rrf~~ 86 (202)
..+....|.+|++||++.+.. .....++..+...........++.+|++||.+. .+++.+..||+.
T Consensus 78 ~~~~~~~~~~lilDe~~~~~~------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~ 145 (151)
T cd00009 78 ELAEKAKPGVLFIDEIDSLSR------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDI 145 (151)
T ss_pred HhhccCCCeEEEEeChhhhhH------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhcc
Confidence 444556789999999998721 122344444444432100124578888988877 788899899998
Q ss_pred eeeec
Q psy3540 87 RVYIP 91 (202)
Q Consensus 87 ~i~i~ 91 (202)
.+.++
T Consensus 146 ~i~~~ 150 (151)
T cd00009 146 RIVIP 150 (151)
T ss_pred EeecC
Confidence 88776
No 157
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0015 Score=59.15 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=67.3
Q ss_pred HHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCC---------CCCceEEEEEecCCCCCc
Q psy3540 6 RTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL---------YEDKIIMILAATNHPWDI 76 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~---------~~~~~v~viatTn~~~~l 76 (202)
+-...|....| ++++||||.+..+-.+ +. .++||.-||--.+.. ..=..|++|+|+|..+.|
T Consensus 409 Q~mkka~~~NP-v~LLDEIDKm~ss~rG--DP------aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tI 479 (782)
T COG0466 409 QGMKKAGVKNP-VFLLDEIDKMGSSFRG--DP------ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTI 479 (782)
T ss_pred HHHHHhCCcCC-eEEeechhhccCCCCC--Ch------HHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccC
Confidence 44567788889 8899999999765322 22 345666555322211 112569999999999999
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHHHHHh
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCL 106 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il~~~l 106 (202)
+..|+.|.+ +|.++-=+..+..+|-+.||
T Consensus 480 P~PLlDRME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 480 PAPLLDRME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ChHHhccee-eeeecCCChHHHHHHHHHhc
Confidence 999999984 77887778899999999888
No 158
>KOG0989|consensus
Probab=97.22 E-value=0.019 Score=47.43 Aligned_cols=96 Identities=20% Similarity=0.167 Sum_probs=65.3
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCHH
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNEW 96 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~~ 96 (202)
-||+|||+|++... .-+.|...|+.... .+++|..||+++.|..-+.+|..+ +.|+....+
T Consensus 131 KiiIlDEcdsmtsd------------aq~aLrr~mE~~s~------~trFiLIcnylsrii~pi~SRC~K-frFk~L~d~ 191 (346)
T KOG0989|consen 131 KIIILDECDSMTSD------------AQAALRRTMEDFSR------TTRFILICNYLSRIIRPLVSRCQK-FRFKKLKDE 191 (346)
T ss_pred eEEEEechhhhhHH------------HHHHHHHHHhcccc------ceEEEEEcCChhhCChHHHhhHHH-hcCCCcchH
Confidence 69999999998642 35678888888654 378889999999999999998754 444544444
Q ss_pred HHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHH
Q psy3540 97 ARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANL 135 (202)
Q Consensus 97 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l 135 (202)
.-...|+....+..++ .+--++.++..++| ||+..
T Consensus 192 ~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR~A 227 (346)
T KOG0989|consen 192 DIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLRRA 227 (346)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHH
Confidence 4455555555443333 23346777777654 55543
No 159
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.033 Score=50.73 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=73.4
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCHH
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNEW 96 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~~ 96 (202)
-|++|||+|.+.. .-.+.|+..|+.... .+++|.+|+.+..|-+.+++|. ..++|..|+.+
T Consensus 129 KVvIIdEad~Lt~------------~a~naLLK~LEePp~------~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ 189 (620)
T PRK14954 129 RVYIIDEVHMLST------------AAFNAFLKTLEEPPP------HAIFIFATTELHKIPATIASRC-QRFNFKRIPLD 189 (620)
T ss_pred EEEEEeChhhcCH------------HHHHHHHHHHhCCCC------CeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHH
Confidence 5999999988842 125678888877554 2555566677899999988876 58899999998
Q ss_pred HHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 97 ARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 97 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
+-...++..+...+.. .+..+..|+..+.| +.+++.+.++...
T Consensus 190 ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dlr~al~eLeKL~ 233 (620)
T PRK14954 190 EIQSQLQMICRAEGIQIDADALQLIARKAQG-SMRDAQSILDQVI 233 (620)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 8888888777543322 34457778888865 6666666655543
No 160
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.20 E-value=0.014 Score=49.20 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=91.1
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC------------CCCccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH------------PWDIDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~------------~~~ld~al~r 82 (202)
=|-|+||||++-|=- ...+-|-..|..--.. ++|.+||+ |.-|+..|+.
T Consensus 291 VpGVLFIDEvHmLDI------------E~FsFlnrAlEse~aP-------Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD 351 (450)
T COG1224 291 VPGVLFIDEVHMLDI------------ECFSFLNRALESELAP-------IIILATNRGMTKIRGTDIESPHGIPLDLLD 351 (450)
T ss_pred ecceEEEechhhhhH------------HHHHHHHHHhhcccCc-------EEEEEcCCceeeecccCCcCCCCCCHhhhh
Confidence 499999999987611 1233333344433322 56677775 8889999997
Q ss_pred cccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhh
Q psy3540 83 RFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQ 161 (202)
Q Consensus 83 rf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~ 161 (202)
|.- .|...+=+.++-++|++.-.....+. ++-.++.|+...+--|-+=--+|..-|...|.++...
T Consensus 352 Rll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~------------ 418 (450)
T COG1224 352 RLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSK------------ 418 (450)
T ss_pred hee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCC------------
Confidence 762 33333337778888988887543332 3445777777766555554556666666666555321
Q ss_pred ccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q psy3540 162 EDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEF 199 (202)
Q Consensus 162 ~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~ 199 (202)
.|..+|.+.|-.-+--. ...++.+++|...|
T Consensus 419 -----~V~~~dVe~a~~lF~D~--krSv~~v~~~~~~~ 449 (450)
T COG1224 419 -----RVEVEDVERAKELFLDV--KRSVEYVEKYEGLL 449 (450)
T ss_pred -----eeehhHHHHHHHHHhhH--HHHHHHHHHHHhhc
Confidence 68889999998887543 34456666666543
No 161
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.17 E-value=0.0034 Score=52.64 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=56.3
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCC----C--CCCCceEEEEEecC-----CCCCccHHHHhccc
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNS----S--LYEDKIIMILAATN-----HPWDIDEAFRRRFE 85 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~----~--~~~~~~v~viatTn-----~~~~ld~al~rrf~ 85 (202)
+|+|+|||+..- ..+.+.||..|+...- . ..-..+.+||+|+| .-..+++|+++||-
T Consensus 114 ~ill~DEInra~------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~ 181 (329)
T COG0714 114 VILLLDEINRAP------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFL 181 (329)
T ss_pred eEEEEeccccCC------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEE
Confidence 599999998753 2356777777775111 0 11236788999999 67788999999999
Q ss_pred ceeeecCC-CHHHHHHHHHHHhc
Q psy3540 86 KRVYIPLP-NEWARYQLLTLCLE 107 (202)
Q Consensus 86 ~~i~i~~P-~~~~R~~il~~~l~ 107 (202)
..++++.| ...+...++.....
T Consensus 182 ~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 182 LRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred EEEecCCCCchHHHHHHHHhCcc
Confidence 99999999 55556666555554
No 162
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.14 E-value=0.002 Score=50.38 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=63.7
Q ss_pred HHHHHHHHhhhCC-CeEEEEccccccc-cccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc---
Q psy3540 3 EVQRTNVPSNSYR-VSTIFIDEVDSLC-SMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID--- 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~-P~Ii~iDeiD~l~-~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld--- 77 (202)
.+..++....... ..||+|||+|.+. ..+ ....+...|...++..... .++.+|.+++......
T Consensus 105 ~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~----~~~~~v~~~S~~~~~~~~~ 173 (234)
T PF01637_consen 105 ALERLLEKLKKKGKKVIIVIDEFQYLAIASE-------EDKDFLKSLRSLLDSLLSQ----QNVSIVITGSSDSLMEEFL 173 (234)
T ss_dssp -HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-------TTHHHHHHHHHHHHH--------TTEEEEEEESSHHHHHHTT
T ss_pred HHHHHHHHHHhcCCcEEEEEecHHHHhhccc-------chHHHHHHHHHHHhhcccc----CCceEEEECCchHHHHHhh
Confidence 4566666666554 4899999999998 222 1134667777777775443 3333333433321111
Q ss_pred ---HHHHhcccceeeecCCCHHHHHHHHHHHhcCcc-c-CCcccHHHHHHHccCCC
Q psy3540 78 ---EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV-I-DVNLDFHKISKMLEGYT 128 (202)
Q Consensus 78 ---~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~-~-~~~~~~~~la~~t~g~s 128 (202)
..+..|+.. ++++.-+.++-.++++..+.... + .++.+++.+...|.|+-
T Consensus 174 ~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 174 DDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp -TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-H
T ss_pred cccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCH
Confidence 123337766 99999999999999999876551 1 25678889999998864
No 163
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.12 E-value=0.004 Score=56.52 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=64.3
Q ss_pred eEEEEEecCCC--CCccHHHHhccc---ceeeecC--C-CHHHHHHHHHHHhc---CcccCCccc---HHHHHH---Hcc
Q psy3540 63 IIMILAATNHP--WDIDEAFRRRFE---KRVYIPL--P-NEWARYQLLTLCLE---GVVIDVNLD---FHKISK---MLE 125 (202)
Q Consensus 63 ~v~viatTn~~--~~ld~al~rrf~---~~i~i~~--P-~~~~R~~il~~~l~---~~~~~~~~~---~~~la~---~t~ 125 (202)
.+.||+++|.. ..+|+.++.||+ ..++++. | +.+.|..+.+.+.. .....+.++ +..|.+ +..
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~a 347 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRA 347 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHH
Confidence 57788888863 679999999999 6666643 4 56666666554432 221111222 233322 111
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhCC
Q psy3540 126 ------GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK 182 (202)
Q Consensus 126 ------g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 182 (202)
-.+.++|.++++.|...|..+. ...|+.+|+++|++..+.
T Consensus 348 g~r~~lsl~~R~L~~llR~A~~iA~~~~-----------------~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 348 GRKDHLTLRLRELGGLVRAAGDIAKSSG-----------------KVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred hcccccCCCHHHHHHHHHHHHHHHHhcC-----------------CceecHHHHHHHHHHHHH
Confidence 1457899999999865553331 127999999999998764
No 164
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0014 Score=54.75 Aligned_cols=89 Identities=24% Similarity=0.339 Sum_probs=62.9
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCC----CCceEEEEEec----CCCCCccHHHHhcccc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY----EDKIIMILAAT----NHPWDIDEAFRRRFEK 86 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~----~~~~v~viatT----n~~~~ld~al~rrf~~ 86 (202)
+-.||||||||.|+.+.+.++..-.-..+--.||-.+.|-.-+++ +.+.+++||+- ..|++|=|.|.-||..
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 446999999999998765332211122344556666665433221 34779999885 4699999999999999
Q ss_pred eeeecCCCHHHHHHHHH
Q psy3540 87 RVYIPLPNEWARYQLLT 103 (202)
Q Consensus 87 ~i~i~~P~~~~R~~il~ 103 (202)
.+++...+.+.-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999988777763
No 165
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.01 E-value=0.014 Score=55.19 Aligned_cols=125 Identities=13% Similarity=0.123 Sum_probs=85.2
Q ss_pred hhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-CCCC----CCceEEEEEecCCCCC-----------
Q psy3540 12 NSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-SSLY----EDKIIMILAATNHPWD----------- 75 (202)
Q Consensus 12 ~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-~~~~----~~~~v~viatTn~~~~----------- 75 (202)
+...-+||||||+|.+- ..+.+.|++.|+.-. .... .-.+.+||+|||....
T Consensus 664 ~~~p~~vlllDeieka~------------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~ 731 (852)
T TIGR03346 664 RRKPYSVVLFDEVEKAH------------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDY 731 (852)
T ss_pred HcCCCcEEEEeccccCC------------HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccH
Confidence 34444799999999652 235677777775321 1100 0145678899998321
Q ss_pred --------------ccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcc---------cC-CcccHHHHHHHc--cCCCH
Q psy3540 76 --------------IDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV---------ID-VNLDFHKISKML--EGYTG 129 (202)
Q Consensus 76 --------------ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~---------~~-~~~~~~~la~~t--~g~s~ 129 (202)
..|.++.|+|.++.|.+++.+....|+...+.... +. ++-.+..|++.. ..|.+
T Consensus 732 ~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~ga 811 (852)
T TIGR03346 732 EEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGA 811 (852)
T ss_pred HHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCc
Confidence 22556669999999999999999999998885311 11 223356777763 36789
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3540 130 SDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 130 ~dl~~l~~~A~~~a~~~~~ 148 (202)
+.|++++++.....+.+..
T Consensus 812 R~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 812 RPLKRAIQREIENPLAKKI 830 (852)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 9999999999988887654
No 166
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.011 Score=49.49 Aligned_cols=105 Identities=13% Similarity=0.151 Sum_probs=71.1
Q ss_pred HHHHHHHHhhhCC----CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNSYR----VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~~~----P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.||++.+.+.... --|++||++|.+.. .-.|.||+.|+.-. .++++|.+|++++.|-|
T Consensus 97 qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~------------~AaNaLLKtLEEPp------~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 97 QVREISQKLALTPQYGIAQVVIVDPADAINR------------AACNALLKTLEEPS------PGRYLWLISAQPARLPA 158 (319)
T ss_pred HHHHHHHHHhhCcccCCcEEEEeccHhhhCH------------HHHHHHHHHhhCCC------CCCeEEEEECChhhCch
Confidence 4566655554322 24999999999832 23688999888744 34778888999999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSD 131 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~d 131 (202)
.+++|. ..+.|+.|+.++-...|... ..+ ..+...++..+.|--+.-
T Consensus 159 TIrSRC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 159 TIRSRC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLA 205 (319)
T ss_pred HHHhhh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHH
Confidence 999987 46778888887776666542 222 223445666666654433
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.93 E-value=0.0015 Score=46.22 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=49.1
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC-CCCccHHHH
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH-PWDIDEAFR 81 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~-~~~ld~al~ 81 (202)
.++.++..|+...|.||++||++.+....... ................ .....+|+++|. ....+..+.
T Consensus 66 ~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~~~ 135 (148)
T smart00382 66 RLRLALALARKLKPDVLILDEITSLLDAEQEA---LLLLLEELRLLLLLKS-------EKNLTVILTTNDEKDLGPALLR 135 (148)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHH---HHHhhhhhHHHHHHHh-------cCCCEEEEEeCCCccCchhhhh
Confidence 46788889998889999999999987543110 0000000000111111 134678888886 555566666
Q ss_pred hcccceeeecCC
Q psy3540 82 RRFEKRVYIPLP 93 (202)
Q Consensus 82 rrf~~~i~i~~P 93 (202)
+|++..+.++.|
T Consensus 136 ~~~~~~~~~~~~ 147 (148)
T smart00382 136 RRFDRRIVLLLI 147 (148)
T ss_pred hccceEEEecCC
Confidence 699999888765
No 168
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.85 E-value=0.022 Score=53.91 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=80.5
Q ss_pred CCC-eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCC--CCCC---CCCceEEEEEecCCCC-------------
Q psy3540 14 YRV-STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL--NSSL---YEDKIIMILAATNHPW------------- 74 (202)
Q Consensus 14 ~~P-~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~--~~~~---~~~~~v~viatTn~~~------------- 74 (202)
..| +||||||+|.+- ..+.+.|++.++.- .... ..-.+.++|+|||...
T Consensus 668 ~~p~~vLllDEieka~------------~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~ 735 (857)
T PRK10865 668 RRPYSVILLDEVEKAH------------PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYA 735 (857)
T ss_pred hCCCCeEEEeehhhCC------------HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchH
Confidence 445 899999998652 23567777777531 1110 0113467888999731
Q ss_pred ------------CccHHHHhcccceeeecCCCHHHHHHHHHHHhcCc-------ccC---CcccHHHHHHHc--cCCCHH
Q psy3540 75 ------------DIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGV-------VID---VNLDFHKISKML--EGYTGS 130 (202)
Q Consensus 75 ------------~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~-------~~~---~~~~~~~la~~t--~g~s~~ 130 (202)
.+.|+++.|+|..+.|.+++.+.-..|++.++... ... ++--+..|+... .-|-++
T Consensus 736 ~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GAR 815 (857)
T PRK10865 736 HMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGAR 815 (857)
T ss_pred HHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChH
Confidence 23467888999999999999999999998888542 111 122245555532 223477
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3540 131 DIANLARDAAMMSIRRKI 148 (202)
Q Consensus 131 dl~~l~~~A~~~a~~~~~ 148 (202)
.|+.++++-....+.+..
T Consensus 816 pL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 816 PLKRAIQQQIENPLAQQI 833 (857)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999988887776544
No 169
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.84 E-value=0.018 Score=52.59 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=54.8
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC----CC---CCCCceEEEEEecCCC-CCccHHHHhccccee
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN----SS---LYEDKIIMILAATNHP-WDIDEAFRRRFEKRV 88 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~----~~---~~~~~~v~viatTn~~-~~ld~al~rrf~~~i 88 (202)
.||||||++.+-. .+.+.|+..|+.-. .. ..-..++.+|+|+|-. ..+.++|+.||+..+
T Consensus 128 GiL~lDEi~~l~~------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i 195 (633)
T TIGR02442 128 GILYIDEVNLLDD------------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCV 195 (633)
T ss_pred CeEEeChhhhCCH------------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEE
Confidence 4999999998842 34667777775311 00 0012458899988843 368899999999999
Q ss_pred eecCC-CHHHHHHHHHHHh
Q psy3540 89 YIPLP-NEWARYQLLTLCL 106 (202)
Q Consensus 89 ~i~~P-~~~~R~~il~~~l 106 (202)
.++.| +.++|.++++..+
T Consensus 196 ~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 196 DVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred EccCCCchHHHHHHHHHHH
Confidence 99887 4678888887654
No 170
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.83 E-value=0.023 Score=53.62 Aligned_cols=127 Identities=14% Similarity=0.079 Sum_probs=84.6
Q ss_pred HHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC--CCCC---CCceEEEEEecCCCC---------
Q psy3540 9 VPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN--SSLY---EDKIIMILAATNHPW--------- 74 (202)
Q Consensus 9 ~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~--~~~~---~~~~v~viatTn~~~--------- 74 (202)
...+.+.+|||+|||+|..- ..+.+.|++.+|.-. ...+ .-.+.++|.|||...
T Consensus 662 ~~v~~~p~svvllDEieka~------------~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~ 729 (852)
T TIGR03345 662 EAVRRKPYSVVLLDEVEKAH------------PDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCAD 729 (852)
T ss_pred HHHHhCCCcEEEEechhhcC------------HHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccC
Confidence 33455677999999998532 235677777776432 1000 014578889988521
Q ss_pred --------------------CccHHHHhcccceeeecCCCHHHHHHHHHHHhcCc--------ccC---CcccHHHHHHH
Q psy3540 75 --------------------DIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGV--------VID---VNLDFHKISKM 123 (202)
Q Consensus 75 --------------------~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~--------~~~---~~~~~~~la~~ 123 (202)
.+.|+++.|++ .|.|.+.+.++-..|+...+... ++. .+.-+..|+..
T Consensus 730 ~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~ 808 (852)
T TIGR03345 730 PETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVAR 808 (852)
T ss_pred cccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHH
Confidence 14466677887 88999999999999998887542 111 22235677777
Q ss_pred ccC--CCHHHHHHHHHHHHHHHHHHHH
Q psy3540 124 LEG--YTGSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 124 t~g--~s~~dl~~l~~~A~~~a~~~~~ 148 (202)
..+ |-++.|+.+++.-...++.+..
T Consensus 809 g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 809 CTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 633 6689999999988877776543
No 171
>KOG2227|consensus
Probab=96.73 E-value=0.02 Score=49.82 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=79.4
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh-c-----cccee
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR-R-----FEKRV 88 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r-r-----f~~~i 88 (202)
.|-|+++||+|.|+..+.. ++-.+ =+|..+. +.++++||.+|..+.-|..|-| . -...+
T Consensus 256 ~~~llVlDEmD~L~tr~~~---------vLy~l-Fewp~lp-----~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l 320 (529)
T KOG2227|consen 256 FMLLLVLDEMDHLITRSQT---------VLYTL-FEWPKLP-----NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLL 320 (529)
T ss_pred ceEEEEechhhHHhhcccc---------eeeee-hhcccCC-----cceeeeeeehhhhhHHHHHhhhhhhccCCCCcee
Confidence 5789999999999843311 11111 1244444 3679999999999999988887 2 35688
Q ss_pred eecCCCHHHHHHHHHHHhcCcccCCcc--cHHHHHHHccCCCHHHHHH---HHHHHHHHH
Q psy3540 89 YIPLPNEWARYQLLTLCLEGVVIDVNL--DFHKISKMLEGYTGSDIAN---LARDAAMMS 143 (202)
Q Consensus 89 ~i~~P~~~~R~~il~~~l~~~~~~~~~--~~~~la~~t~g~s~~dl~~---l~~~A~~~a 143 (202)
.|++=+.++-.+||+.-+......... -+.-.|.+..|-|| |++. +|+.|.-.+
T Consensus 321 ~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 321 VFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIA 379 (529)
T ss_pred eecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHH
Confidence 898889999999999999877655333 36678888888875 5554 345554444
No 172
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.73 E-value=0.031 Score=52.70 Aligned_cols=130 Identities=9% Similarity=0.084 Sum_probs=86.9
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-CCCC----CCceEEEEEecCCCCC------
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-SSLY----EDKIIMILAATNHPWD------ 75 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-~~~~----~~~~v~viatTn~~~~------ 75 (202)
+....+....+||+|||+|..- ..+.+.|++.|+.-. .... .-.+.++|.|||....
T Consensus 603 l~~~~~~~p~~VvllDeieka~------------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~ 670 (821)
T CHL00095 603 LTEAVRKKPYTVVLFDEIEKAH------------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNS 670 (821)
T ss_pred HHHHHHhCCCeEEEECChhhCC------------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhc
Confidence 3444454445999999999762 236788888887521 1000 1145789999886321
Q ss_pred -------------------------------ccHHHHhcccceeeecCCCHHHHHHHHHHHhcCc---------ccC-Cc
Q psy3540 76 -------------------------------IDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGV---------VID-VN 114 (202)
Q Consensus 76 -------------------------------ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~---------~~~-~~ 114 (202)
..|.++.|+|.++.|.+.+.++-..|++..+... .+. .+
T Consensus 671 ~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~ 750 (821)
T CHL00095 671 GGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTE 750 (821)
T ss_pred cccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECH
Confidence 1245666999999999999999999998888642 111 12
Q ss_pred ccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHH
Q psy3540 115 LDFHKISKM--LEGYTGSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 115 ~~~~~la~~--t~g~s~~dl~~l~~~A~~~a~~~~~ 148 (202)
--...|+.. ...|-++.|+.++++-...++.+..
T Consensus 751 ~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 751 RIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHH
Confidence 235667775 3456688899999888877776554
No 173
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.012 Score=49.59 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=63.7
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCH
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNE 95 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~ 95 (202)
--|++||++|.+-. ...|.||+.|+.=. .+.++|.+|++|+.|.|.+++|.. .+.++.|+.
T Consensus 109 ~kV~iI~~ae~m~~------------~AaNaLLKtLEEPp------~~t~fiL~t~~~~~lLpTIrSRCq-~~~~~~~~~ 169 (334)
T PRK07993 109 AKVVWLPDAALLTD------------AAANALLKTLEEPP------ENTWFFLACREPARLLATLRSRCR-LHYLAPPPE 169 (334)
T ss_pred ceEEEEcchHhhCH------------HHHHHHHHHhcCCC------CCeEEEEEECChhhChHHHHhccc-cccCCCCCH
Confidence 35999999999843 24688999888733 558889999999999999999876 579999998
Q ss_pred HHHHHHHHHHhcCcccCCcccHHHHHHHccCC
Q psy3540 96 WARYQLLTLCLEGVVIDVNLDFHKISKMLEGY 127 (202)
Q Consensus 96 ~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~ 127 (202)
++-...|.... ..+ ......++..+.|-
T Consensus 170 ~~~~~~L~~~~---~~~-~~~a~~~~~la~G~ 197 (334)
T PRK07993 170 QYALTWLSREV---TMS-QDALLAALRLSAGA 197 (334)
T ss_pred HHHHHHHHHcc---CCC-HHHHHHHHHHcCCC
Confidence 87777665422 222 22234455555553
No 174
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.027 Score=47.31 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=61.1
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.||++-+.+.. ..--|++||++|.+-. ...|.||+.|..-. ..+++|.+|++|+.|.|
T Consensus 91 ~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~------------~AaNaLLKtLEEPp------~~~~fiL~t~~~~~llp 152 (325)
T PRK06871 91 QVREINEKVSQHAQQGGNKVVYIQGAERLTE------------AAANALLKTLEEPR------PNTYFLLQADLSAALLP 152 (325)
T ss_pred HHHHHHHHHhhccccCCceEEEEechhhhCH------------HHHHHHHHHhcCCC------CCeEEEEEECChHhCch
Confidence 45555444432 2235899999998843 23688999887733 55788889999999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLC 105 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~ 105 (202)
.+++|. ..+.|+.|+.++-.+.|...
T Consensus 153 TI~SRC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 153 TIYSRC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred HHHhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 999986 46788888888877777654
No 175
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.41 E-value=0.013 Score=44.09 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=47.9
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.|+++...+.. ...-|++|||+|.+.. ...+.||..|+.-.. ++++|.+|++++.|-+
T Consensus 86 ~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~------------~a~NaLLK~LEepp~------~~~fiL~t~~~~~il~ 147 (162)
T PF13177_consen 86 QIREIIEFLSLSPSEGKYKVIIIDEADKLTE------------EAQNALLKTLEEPPE------NTYFILITNNPSKILP 147 (162)
T ss_dssp HHHHHHHHCTSS-TTSSSEEEEEETGGGS-H------------HHHHHHHHHHHSTTT------TEEEEEEES-GGGS-H
T ss_pred HHHHHHHHHHHHHhcCCceEEEeehHhhhhH------------HHHHHHHHHhcCCCC------CEEEEEEECChHHChH
Confidence 45555555432 2356999999998843 346899999998654 4888999999999999
Q ss_pred HHHhcccceeeec
Q psy3540 79 AFRRRFEKRVYIP 91 (202)
Q Consensus 79 al~rrf~~~i~i~ 91 (202)
.+++|. ..+.++
T Consensus 148 TI~SRc-~~i~~~ 159 (162)
T PF13177_consen 148 TIRSRC-QVIRFR 159 (162)
T ss_dssp HHHTTS-EEEEE-
T ss_pred HHHhhc-eEEecC
Confidence 999975 234443
No 176
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.38 E-value=0.025 Score=47.08 Aligned_cols=103 Identities=9% Similarity=0.089 Sum_probs=68.1
Q ss_pred HHHHHHHHhh----hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSN----SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~----~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.|+++...+. ....-|++||++|.+-. ...|.||..+..-. ..+++|.+|++|+.+-+
T Consensus 77 ~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~------------~a~naLLK~LEepp------~~t~~il~~~~~~~ll~ 138 (313)
T PRK05564 77 DIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE------------QAQNAFLKTIEEPP------KGVFIILLCENLEQILD 138 (313)
T ss_pred HHHHHHHHHhcCcccCCceEEEEechhhcCH------------HHHHHHHHHhcCCC------CCeEEEEEeCChHhCcH
Confidence 4455554332 22345999999987722 23578888887643 33566666688999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCC
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGY 127 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~ 127 (202)
.+++|. ..++++.|+.++-...+.....+. +...+..++..+.|-
T Consensus 139 TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 139 TIKSRC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDGI 183 (313)
T ss_pred HHHhhc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCCC
Confidence 999987 489999999988877776654322 123355566666653
No 177
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.025 Score=47.33 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=56.0
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCHH
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNEW 96 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~~ 96 (202)
-|++||++|.+.. ...|.||+.++.-. .++++|..|++|+.|-|.+++|.. .+.|+.|+.+
T Consensus 110 kV~iI~~ae~m~~------------~AaNaLLKtLEEPp------~~t~fiL~t~~~~~lLpTI~SRCq-~~~~~~~~~~ 170 (319)
T PRK06090 110 RLFVIEPADAMNE------------SASNALLKTLEEPA------PNCLFLLVTHNQKRLLPTIVSRCQ-QWVVTPPSTA 170 (319)
T ss_pred eEEEecchhhhCH------------HHHHHHHHHhcCCC------CCeEEEEEECChhhChHHHHhcce-eEeCCCCCHH
Confidence 5999999999842 24688999888743 458889999999999999999874 7889999988
Q ss_pred HHHHHHHH
Q psy3540 97 ARYQLLTL 104 (202)
Q Consensus 97 ~R~~il~~ 104 (202)
+-.+.|..
T Consensus 171 ~~~~~L~~ 178 (319)
T PRK06090 171 QAMQWLKG 178 (319)
T ss_pred HHHHHHHH
Confidence 88777654
No 178
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.33 E-value=0.034 Score=46.12 Aligned_cols=79 Identities=20% Similarity=0.171 Sum_probs=52.1
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc---------------
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID--------------- 77 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld--------------- 77 (202)
...|-||+|||+|.+-+. -..+++..+..+... .++++|.+.+. +.|-
T Consensus 170 ~~~~iViiIDdLDR~~~~------------~i~~~l~~ik~~~~~----~~i~~Il~~D~-~~l~~ai~~~~~~~~~~~~ 232 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSPE------------EIVELLEAIKLLLDF----PNIIFILAFDP-EILEKAIEKNYGEGFDEID 232 (325)
T ss_pred CCceEEEEEcchhcCCcH------------HHHHHHHHHHHhcCC----CCeEEEEEecH-HHHHHHHHhhcCccccccc
Confidence 356889999999998432 134555555555554 45666666653 2222
Q ss_pred -HHHHh-cccceeeecCCCHHHHHHHHHHHhcC
Q psy3540 78 -EAFRR-RFEKRVYIPLPNEWARYQLLTLCLEG 108 (202)
Q Consensus 78 -~al~r-rf~~~i~i~~P~~~~R~~il~~~l~~ 108 (202)
...+. .|+..+.+|.|+..+...++...+..
T Consensus 233 ~~~yLeKiiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 233 GREYLEKIIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HHHHHHhhcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 22233 67889999999999988888887643
No 179
>PHA02244 ATPase-like protein
Probab=96.26 E-value=0.038 Score=47.10 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=45.0
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhC-----CCCCCCCCceEEEEEecCCC-----------CCcc
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG-----LNSSLYEDKIIMILAATNHP-----------WDID 77 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~-----~~~~~~~~~~v~viatTn~~-----------~~ld 77 (202)
..+.+++|||+|.+-+. +...|...++. ..+......++.+|+|+|.+ ..++
T Consensus 179 ~~GgvLiLDEId~a~p~------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~ 246 (383)
T PHA02244 179 KKGGLFFIDEIDASIPE------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKID 246 (383)
T ss_pred hcCCEEEEeCcCcCCHH------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccC
Confidence 35789999999987432 22333333321 11110122567899999973 6789
Q ss_pred HHHHhcccceeeecCCCH
Q psy3540 78 EAFRRRFEKRVYIPLPNE 95 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~ 95 (202)
+|++.||- .+++..|..
T Consensus 247 ~AllDRFv-~I~~dyp~~ 263 (383)
T PHA02244 247 GATLDRFA-PIEFDYDEK 263 (383)
T ss_pred HHHHhhcE-EeeCCCCcH
Confidence 99999995 699999984
No 180
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.033 Score=46.53 Aligned_cols=112 Identities=9% Similarity=0.097 Sum_probs=74.5
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.+|++-+.+.. ...-|++||++|.+-. ...|.||+.|..-. . .++|..|+.|+.|-|
T Consensus 108 ~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------~aaNaLLK~LEEPp-~------~~fILi~~~~~~Ll~ 168 (314)
T PRK07399 108 QIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------AAANALLKTLEEPG-N------GTLILIAPSPESLLP 168 (314)
T ss_pred HHHHHHHHHccCcccCCceEEEEEchhhcCH------------HHHHHHHHHHhCCC-C------CeEEEEECChHhCcH
Confidence 34555444432 2346999999988732 23678998887754 2 356677789999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLAR 137 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~ 137 (202)
.+++|. ..+.|+.|+.++-..+|........ .+.+...++..+.|= ++....+..
T Consensus 169 TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~a~Gs-~~~al~~l~ 223 (314)
T PRK07399 169 TIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLALAQGS-PGAAIANIE 223 (314)
T ss_pred HHHhhc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHHcCCC-HHHHHHHHH
Confidence 999986 6889999999999888887643211 122346777777664 333333333
No 181
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.22 E-value=0.0066 Score=44.07 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=37.6
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC----C---CCCc------eEEEEEecCCCC----Ccc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS----L---YEDK------IIMILAATNHPW----DID 77 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~----~---~~~~------~v~viatTn~~~----~ld 77 (202)
.++|++|||++..- ..+...|+..+++-.-. . .... ++.+|+|+|... .++
T Consensus 65 ~~~il~lDEin~a~------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~ 132 (139)
T PF07728_consen 65 KGGILVLDEINRAP------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELS 132 (139)
T ss_dssp EEEEEEESSCGG--------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTC
T ss_pred ceeEEEECCcccCC------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCC
Confidence 68999999998752 23455555555532111 0 0011 489999999999 999
Q ss_pred HHHHhcc
Q psy3540 78 EAFRRRF 84 (202)
Q Consensus 78 ~al~rrf 84 (202)
+++++||
T Consensus 133 ~al~~Rf 139 (139)
T PF07728_consen 133 PALLDRF 139 (139)
T ss_dssp HHHHTT-
T ss_pred HHHHhhC
Confidence 9999998
No 182
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.22 E-value=0.024 Score=47.62 Aligned_cols=70 Identities=14% Similarity=0.043 Sum_probs=53.8
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCH
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNE 95 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~ 95 (202)
.-|++|||+|.+-. ...|.||+.|+.-.+ .+++|.+|+.+..|-+++++|. ..++++.|+.
T Consensus 111 ~kvviI~~a~~~~~------------~a~NaLLK~LEEPp~------~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~ 171 (329)
T PRK08058 111 KKVYIIEHADKMTA------------SAANSLLKFLEEPSG------GTTAILLTENKHQILPTILSRC-QVVEFRPLPP 171 (329)
T ss_pred ceEEEeehHhhhCH------------HHHHHHHHHhcCCCC------CceEEEEeCChHhCcHHHHhhc-eeeeCCCCCH
Confidence 35999999988732 235789988887443 4677778889999999999986 5788888888
Q ss_pred HHHHHHHHH
Q psy3540 96 WARYQLLTL 104 (202)
Q Consensus 96 ~~R~~il~~ 104 (202)
++-...|+.
T Consensus 172 ~~~~~~L~~ 180 (329)
T PRK08058 172 ESLIQRLQE 180 (329)
T ss_pred HHHHHHHHH
Confidence 877666654
No 183
>KOG2680|consensus
Probab=96.21 E-value=0.19 Score=41.83 Aligned_cols=92 Identities=14% Similarity=0.075 Sum_probs=57.4
Q ss_pred CCCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy3540 73 PWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQ 151 (202)
Q Consensus 73 ~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~ 151 (202)
|.-||-.++.|.- .|...+-+.++-..||+..+...... .+..++-|......-+-+=--+|+..|.+.|.+|...
T Consensus 339 phGiP~D~lDR~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~-- 415 (454)
T KOG2680|consen 339 PHGIPIDLLDRML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK-- 415 (454)
T ss_pred CCCCcHHHhhhhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc--
Confidence 7788888887652 34444447788889999888543222 1222344444444444444456777777777777542
Q ss_pred ChhHHhhhhhccCCCCCcHHHHHHHHHHhCC
Q psy3540 152 TPAQIKEIKQEDIDLPVTEKDFREAIARCRK 182 (202)
Q Consensus 152 ~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 182 (202)
.+..+|+..+..-+--
T Consensus 416 ---------------~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 416 ---------------VVEVDDIERVYRLFLD 431 (454)
T ss_pred ---------------eeehhHHHHHHHHHhh
Confidence 5778888888887754
No 184
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.02 E-value=0.16 Score=45.28 Aligned_cols=68 Identities=24% Similarity=0.325 Sum_probs=46.2
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-------CCCCCCceEEEEEecCCCC---------------
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-------SSLYEDKIIMILAATNHPW--------------- 74 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-------~~~~~~~~v~viatTn~~~--------------- 74 (202)
-++|+||++.+- ..+...|++.|+.-. ....-..++.+|+|+|...
T Consensus 296 GvLfLDEi~e~~------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~ 363 (506)
T PRK09862 296 GVLFLDELPEFE------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQ 363 (506)
T ss_pred CEEecCCchhCC------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHH
Confidence 599999997752 235666666663211 1101124689999999742
Q ss_pred ------CccHHHHhcccceeeecCCCHH
Q psy3540 75 ------DIDEAFRRRFEKRVYIPLPNEW 96 (202)
Q Consensus 75 ------~ld~al~rrf~~~i~i~~P~~~ 96 (202)
.+...++.|||..+.++.|+.+
T Consensus 364 ~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 364 TLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 4777888899999999998643
No 185
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.99 E-value=0.12 Score=42.73 Aligned_cols=108 Identities=18% Similarity=0.137 Sum_probs=66.5
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.||++-..+.. ..--|++||++|.+.. ...|.||+.++.-. .++++|.+|++++.|-|
T Consensus 88 qIR~l~~~~~~~p~~~~~kV~II~~ad~m~~------------~AaNaLLKtLEEPp------~~t~~iL~t~~~~~lLp 149 (290)
T PRK07276 88 TIRELVKNFSQSGYEGKQQVFIIKDADKMHV------------NAANSLLKVIEEPQ------SEIYIFLLTNDENKVLP 149 (290)
T ss_pred HHHHHHHHHhhCcccCCcEEEEeehhhhcCH------------HHHHHHHHHhcCCC------CCeEEEEEECChhhCch
Confidence 45555444432 1236999999999843 23688998887743 44788889999999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLAR 137 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~ 137 (202)
.+++|. ..+.|+. +.+.-.+++. ..+... +...++....| +++....+..
T Consensus 150 TI~SRc-q~i~f~~-~~~~~~~~L~----~~g~~~--~~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 150 TIKSRT-QIFHFPK-NEAYLIQLLE----QKGLLK--TQAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred HHHHcc-eeeeCCC-cHHHHHHHHH----HcCCCh--HHHHHHHHHCC-CHHHHHHHhC
Confidence 999986 4566654 4444334443 223222 22333434445 6666666653
No 186
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=95.55 E-value=0.3 Score=44.30 Aligned_cols=134 Identities=13% Similarity=-0.019 Sum_probs=76.0
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC-------CCCCceEEEEEecCCC---CCccHHHHhcccc
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS-------LYEDKIIMILAATNHP---WDIDEAFRRRFEK 86 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~-------~~~~~~v~viatTn~~---~~ld~al~rrf~~ 86 (202)
.|||+||+..+- .+++..|++-|+.=.-. ..-..++++||+-|.. ..|.++++-||+.
T Consensus 95 GvL~lDe~n~~~------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l 162 (584)
T PRK13406 95 GVLVLAMAERLE------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAF 162 (584)
T ss_pred CEEEecCcccCC------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEE
Confidence 599999997762 35788888888642110 0012457788873322 3588999999999
Q ss_pred eeeecCCCHHHHH-------HHH--HHHhcCcccCCcccHHHHHHHc--cCC-CHHHHHHHHHHHHHHHHHHHHhcCChh
Q psy3540 87 RVYIPLPNEWARY-------QLL--TLCLEGVVIDVNLDFHKISKML--EGY-TGSDIANLARDAAMMSIRRKIMGQTPA 154 (202)
Q Consensus 87 ~i~i~~P~~~~R~-------~il--~~~l~~~~~~~~~~~~~la~~t--~g~-s~~dl~~l~~~A~~~a~~~~~~~~~~~ 154 (202)
.+.++.|+..+-. .|. +..+.+..++ +..+..++..+ -|. |.+---.+++-|...|..+..
T Consensus 163 ~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr------ 235 (584)
T PRK13406 163 HLDLDGLALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGR------ 235 (584)
T ss_pred EEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCC------
Confidence 9999988754321 122 2222332222 22233333222 233 444444555555555544322
Q ss_pred HHhhhhhccCCCCCcHHHHHHHHHHh
Q psy3540 155 QIKEIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 155 ~~~~~~~~~~~~~it~~df~~Al~~~ 180 (202)
..|+.+|+.+|+.-+
T Consensus 236 -----------~~V~~~dv~~Aa~lv 250 (584)
T PRK13406 236 -----------TAVEEEDLALAARLV 250 (584)
T ss_pred -----------CCCCHHHHHHHHHHH
Confidence 268888888887764
No 187
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.30 E-value=0.093 Score=42.22 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=58.9
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCH
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNE 95 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~ 95 (202)
--|++|+++|.+.. ...|.||+.+..-. .++++|..|.+++.|.|.+++|. ..+.++.|..
T Consensus 90 ~KViII~~ae~mt~------------~AANALLKtLEEPP------~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~ 150 (263)
T PRK06581 90 YKVAIIYSAELMNL------------NAANSCLKILEDAP------KNSYIFLITSRAASIISTIRSRC-FKINVRSSIL 150 (263)
T ss_pred cEEEEEechHHhCH------------HHHHHHHHhhcCCC------CCeEEEEEeCChhhCchhHhhce-EEEeCCCCCH
Confidence 45999999998843 23688998887733 45788888888999999999976 5778888988
Q ss_pred HHHHHHHHHHhcCcc
Q psy3540 96 WARYQLLTLCLEGVV 110 (202)
Q Consensus 96 ~~R~~il~~~l~~~~ 110 (202)
..-.+.+..++....
T Consensus 151 ~~~~e~~~~~~~p~~ 165 (263)
T PRK06581 151 HAYNELYSQFIQPIA 165 (263)
T ss_pred HHHHHHHHHhccccc
Confidence 877777777775543
No 188
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.25 E-value=0.57 Score=41.47 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=46.6
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-CC---CCCCceEEEEEecCCCCC---ccHHHHhcccceee
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-SS---LYEDKIIMILAATNHPWD---IDEAFRRRFEKRVY 89 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-~~---~~~~~~v~viatTn~~~~---ld~al~rrf~~~i~ 89 (202)
.++|+|||...- ..+.+.||..|..-. .. ..+-...++++|||.+.. ..+++.-||-..+.
T Consensus 109 ~lLfLDEI~ras------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFliri~ 176 (498)
T PRK13531 109 EIVFLDEIWKAG------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIRLW 176 (498)
T ss_pred cEEeecccccCC------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEEEE
Confidence 489999996331 346778888884322 11 001122345555574322 23588889999999
Q ss_pred ecCCC-HHHHHHHHHHH
Q psy3540 90 IPLPN-EWARYQLLTLC 105 (202)
Q Consensus 90 i~~P~-~~~R~~il~~~ 105 (202)
+|.|+ .++-.+|+...
T Consensus 177 vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 177 LDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCCCchHHHHHHHHcc
Confidence 99996 45656777653
No 189
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.20 E-value=0.99 Score=36.41 Aligned_cols=96 Identities=10% Similarity=0.085 Sum_probs=66.8
Q ss_pred HHHHHHHhhhC-CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHH--
Q psy3540 4 VQRTNVPSNSY-RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAF-- 80 (202)
Q Consensus 4 i~~~F~~A~~~-~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al-- 80 (202)
+-.++...+.. +.-|||.|++-- ..++. --..|...|+|=-.. ...+|++-||+|+-..|+..+
T Consensus 127 Lp~l~~~Lr~~~~kFIlFcDDLSF------e~gd~-----~yK~LKs~LeG~ve~--rP~NVl~YATSNRRHLl~e~~~d 193 (287)
T COG2607 127 LPDLVELLRARPEKFILFCDDLSF------EEGDD-----AYKALKSALEGGVEG--RPANVLFYATSNRRHLLPEDMKD 193 (287)
T ss_pred HHHHHHHHhcCCceEEEEecCCCC------CCCch-----HHHHHHHHhcCCccc--CCCeEEEEEecCCcccccHhhhh
Confidence 44556666543 467999998621 11111 134455566765544 457899999999977666221
Q ss_pred -------------------Hh-cccceeeecCCCHHHHHHHHHHHhcCcccC
Q psy3540 81 -------------------RR-RFEKRVYIPLPNEWARYQLLTLCLEGVVID 112 (202)
Q Consensus 81 -------------------~r-rf~~~i~i~~P~~~~R~~il~~~l~~~~~~ 112 (202)
++ ||...+.|..|++++-..|+..|.+...++
T Consensus 194 n~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 194 NEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred CCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 12 999999999999999999999999877765
No 190
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.20 E-value=0.28 Score=39.65 Aligned_cols=119 Identities=19% Similarity=0.122 Sum_probs=75.9
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCC-ccHHHHh---cccceee
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWD-IDEAFRR---RFEKRVY 89 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~-ld~al~r---rf~~~i~ 89 (202)
..|.++++||++.+.... ...|.-.+...... .+...++.+|=..--.. --+.++. |++..|+
T Consensus 130 ~r~v~l~vdEah~L~~~~------------le~Lrll~nl~~~~-~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~ 196 (269)
T COG3267 130 KRPVVLMVDEAHDLNDSA------------LEALRLLTNLEEDS-SKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIE 196 (269)
T ss_pred CCCeEEeehhHhhhChhH------------HHHHHHHHhhcccc-cCceeeeecCCcccchhhchHHHHhhhheEEEEEe
Confidence 467999999999885421 22222222222221 11145777775432111 1123332 8988899
Q ss_pred ecCCCHHHHHHHHHHHhcCcccC----CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q psy3540 90 IPLPNEWARYQLLTLCLEGVVID----VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRR 146 (202)
Q Consensus 90 i~~P~~~~R~~il~~~l~~~~~~----~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~ 146 (202)
+++-+.++-...++..+++.... ++--+..+...+.| .|.-|.++|..|...|...
T Consensus 197 l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a 256 (269)
T COG3267 197 LPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSA 256 (269)
T ss_pred cCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHc
Confidence 99889998999999999765433 34457788888888 6788888888887777654
No 191
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=95.15 E-value=0.2 Score=43.18 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=59.5
Q ss_pred hhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhC---------CCCCCCCCceEEEEEecCCC-CCccHHH
Q psy3540 11 SNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG---------LNSSLYEDKIIMILAATNHP-WDIDEAF 80 (202)
Q Consensus 11 A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~---------~~~~~~~~~~v~viatTn~~-~~ld~al 80 (202)
|+++. -|+||||+-.|- ..+.+.||..+.. +.-. -.-++++|||+|-- ..|-|-|
T Consensus 141 a~AnR-GIlYvDEvnlL~------------d~lvd~LLd~aaeG~n~vereGisi~--hpa~fvligTmNPEeGeLrpqL 205 (423)
T COG1239 141 ARANR-GILYVDEVNLLD------------DHLVDALLDVAAEGVNDVEREGISIR--HPARFLLIGTMNPEEGELRPQL 205 (423)
T ss_pred hhccC-CEEEEecccccc------------HHHHHHHHHHHHhCCceeeeCceeec--cCccEEEEeecCccccccchhh
Confidence 34444 499999997772 3467777765543 2222 12568999999963 3566788
Q ss_pred HhcccceeeecCC-CHHHHHHHHHHHhcC
Q psy3540 81 RRRFEKRVYIPLP-NEWARYQLLTLCLEG 108 (202)
Q Consensus 81 ~rrf~~~i~i~~P-~~~~R~~il~~~l~~ 108 (202)
+-||...+.+..| +.++|.+|.+.-+..
T Consensus 206 lDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 206 LDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred HhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 8899999999887 778999999887754
No 192
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=95.14 E-value=0.043 Score=42.39 Aligned_cols=68 Identities=21% Similarity=0.151 Sum_probs=41.5
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLP 93 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P 93 (202)
..+||+|||+..++++|...+.. ....++.+..... .+.-++.+|..|..||+.++++.+..+++..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~------~~~~~~~l~~hRh-----~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKK------VPEIIEFLAQHRH-----YGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----------HHHHGGGGCCC-----TT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCcccccc------chHHHHHHHHhCc-----CCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 57999999999999988542111 1222333433333 45778899999999999999888888877654
No 193
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.07 E-value=0.06 Score=44.49 Aligned_cols=70 Identities=23% Similarity=0.276 Sum_probs=51.0
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
..-||+|||+|.+... ..+.|+..+..-.. +..+|.+||+|+.|-+.+++|. ..+.|++|+
T Consensus 109 ~~kviiidead~mt~~------------A~nallk~lEep~~------~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~ 169 (325)
T COG0470 109 GYKVVIIDEADKLTED------------AANALLKTLEEPPK------NTRFILITNDPSKILPTIRSRC-QRIRFKPPS 169 (325)
T ss_pred CceEEEeCcHHHHhHH------------HHHHHHHHhccCCC------CeEEEEEcCChhhccchhhhcc-eeeecCCch
Confidence 3579999999998652 35778877766544 4788889999999999999865 456666666
Q ss_pred HHHHHHHHH
Q psy3540 95 EWARYQLLT 103 (202)
Q Consensus 95 ~~~R~~il~ 103 (202)
...+....+
T Consensus 170 ~~~~i~~~e 178 (325)
T COG0470 170 RLEAIAWLE 178 (325)
T ss_pred HHHHHHHhh
Confidence 655555444
No 194
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.01 E-value=0.4 Score=43.97 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=64.6
Q ss_pred eEEEEEecCCC--CCccHHHHhccc---ceeeecC--C-CHHHHHHHHHHHhcCccc---CCccc---HHHHHH----Hc
Q psy3540 63 IIMILAATNHP--WDIDEAFRRRFE---KRVYIPL--P-NEWARYQLLTLCLEGVVI---DVNLD---FHKISK----ML 124 (202)
Q Consensus 63 ~v~viatTn~~--~~ld~al~rrf~---~~i~i~~--P-~~~~R~~il~~~l~~~~~---~~~~~---~~~la~----~t 124 (202)
.+.||+++|.. ..+||+++.||. ..+++.. | +.+.+..+++.+.+.... ...++ +..|.+ .+
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~a 356 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRA 356 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHh
Confidence 46788888874 677999998885 5555542 2 356666666544432211 11222 222222 22
Q ss_pred c--C---CCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHH
Q psy3540 125 E--G---YTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKY 192 (202)
Q Consensus 125 ~--g---~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~ 192 (202)
. + +..++|..+++.|...|..+... .++.+|...|+.. ..++.....+.|
T Consensus 357 g~r~~lsl~~~~l~~l~r~a~~~a~~~~~~-----------------~i~~~~v~~a~~~-~~~i~~~~~~~~ 411 (637)
T PRK13765 357 GRKGHLTLKLRDLGGLVRVAGDIARSEGAE-----------------LTTAEHVLEAKKI-ARSIEQQLADRY 411 (637)
T ss_pred CCccccccCHHHHHHHHHHHHHHHHhhccc-----------------eecHHHHHHHHHh-hhhhhHHHHHHH
Confidence 1 1 34688999999988777655321 5788888888744 233444444333
No 195
>KOG2228|consensus
Probab=94.94 E-value=0.08 Score=44.48 Aligned_cols=78 Identities=21% Similarity=0.184 Sum_probs=54.2
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh---cccce-eee
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR---RFEKR-VYI 90 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r---rf~~~-i~i 90 (202)
.|.|.++||+|.+++-. + -.-|.+.+|-..+. ..++.|||.|.+.+.++--=+| ||.+. |++
T Consensus 137 ~~ViFIldEfDlf~~h~---------r--QtllYnlfDisqs~---r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m 202 (408)
T KOG2228|consen 137 GKVIFILDEFDLFAPHS---------R--QTLLYNLFDISQSA---RAPICIIGVTTRLDILELLEKRVKSRFSHRVIFM 202 (408)
T ss_pred ceEEEEeehhhccccch---------h--hHHHHHHHHHHhhc---CCCeEEEEeeccccHHHHHHHHHHhhcccceeec
Confidence 35566679999998632 0 12344555555443 4789999999998877754444 99776 666
Q ss_pred cCC-CHHHHHHHHHHHh
Q psy3540 91 PLP-NEWARYQLLTLCL 106 (202)
Q Consensus 91 ~~P-~~~~R~~il~~~l 106 (202)
+.| +..+-..+++..+
T Consensus 203 ~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 203 LPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCChHHHHHHHHHHh
Confidence 654 6788888998888
No 196
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.46 Score=43.53 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=65.1
Q ss_pred EEEEEecCC-----CCCccHHHHhcccc--eeeecCC-CHHHHHHHHHHHhcCcc------cCCcccHHH---HH-HHcc
Q psy3540 64 IMILAATNH-----PWDIDEAFRRRFEK--RVYIPLP-NEWARYQLLTLCLEGVV------IDVNLDFHK---IS-KMLE 125 (202)
Q Consensus 64 v~viatTn~-----~~~ld~al~rrf~~--~i~i~~P-~~~~R~~il~~~l~~~~------~~~~~~~~~---la-~~t~ 125 (202)
+.+|+.-|. ....++.++.-|.. .+.-++| +.+.|..+|..+.+.+. ....--+.. .| +.++
T Consensus 277 ~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag 356 (647)
T COG1067 277 LKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAG 356 (647)
T ss_pred eEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 445555554 33445555554444 4444667 77899999998885332 221111222 22 2221
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhCCC
Q psy3540 126 -----GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 183 (202)
Q Consensus 126 -----g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 183 (202)
-.+++||.++++.|...|..... ..|+.+|+++|++..++.
T Consensus 357 ~~~~Ltl~~rdl~~lv~~A~~ia~~~~~-----------------~~I~ae~Ve~a~~~~~~~ 402 (647)
T COG1067 357 DQNKLTLRLRDLGNLVREAGDIAVSEGR-----------------KLITAEDVEEALQKRELR 402 (647)
T ss_pred ccceeccCHHHHHHHHHHhhHHHhcCCc-----------------ccCcHHHHHHHHHhhhhH
Confidence 26799999999999888765522 269999999999997765
No 197
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.90 E-value=0.047 Score=41.52 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=38.8
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCC-----CCceEEEEEecCCCCC
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY-----EDKIIMILAATNHPWD 75 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~-----~~~~v~viatTn~~~~ 75 (202)
.||||||||...+. .+.+.+.....+.+.||+.|++-.=... .-.++++|+|+|--..
T Consensus 70 gVVllDEidKa~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 70 GVVLLDEIDKAHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp TEEEEETGGGCSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred hhhhhHHHhhcccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 39999999999876 3334444455788899998874221100 1256899999997443
No 198
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.90 E-value=0.13 Score=43.27 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=59.2
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.||++.+.+.. ..--|++||++|.+-. ...+.|++.|+.... .+.+|.+|++++.+.+
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~------------~a~naLLk~LEep~~------~~~~Ilvth~~~~ll~ 158 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMNL------------QAANSLLKVLEEPPP------QVVFLLVSHAADKVLP 158 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCCH------------HHHHHHHHHHHhCcC------CCEEEEEeCChHhChH
Confidence 46666666643 2235889999988732 235778888877643 2557779999999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTL 104 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~ 104 (202)
.+++|. ..+.|+.|+.++-...|..
T Consensus 159 ti~SRc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 159 TIKSRC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHHh-hhhcCCCCCHHHHHHHHHh
Confidence 999876 5677888988887766654
No 199
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.58 Score=43.65 Aligned_cols=125 Identities=12% Similarity=0.106 Sum_probs=83.4
Q ss_pred hhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCC-CCCC----CceEEEEEecCCCCC-----------
Q psy3540 12 NSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNS-SLYE----DKIIMILAATNHPWD----------- 75 (202)
Q Consensus 12 ~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~-~~~~----~~~v~viatTn~~~~----------- 75 (202)
+....|||+|||||.= ...+.+.||+-||.=.= ...+ =.+.++|+|||--..
T Consensus 590 Rr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~ 657 (786)
T COG0542 590 RRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDF 657 (786)
T ss_pred hcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhcccccc
Confidence 3334589999999762 13589999999885211 1001 145789999985211
Q ss_pred -----------------ccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcc---------cC-CcccHHHHHHHc--cC
Q psy3540 76 -----------------IDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV---------ID-VNLDFHKISKML--EG 126 (202)
Q Consensus 76 -----------------ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~---------~~-~~~~~~~la~~t--~g 126 (202)
..|.++.|+|.+|.|...+.+.-..|+..++.... +. ++.-...|+.+. +.
T Consensus 658 ~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~ 737 (786)
T COG0542 658 ADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPE 737 (786)
T ss_pred chhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCC
Confidence 12445559999999999999999999999886421 11 222345666665 46
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q psy3540 127 YTGSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 127 ~s~~dl~~l~~~A~~~a~~~~~ 148 (202)
|-++-|+.+++.-....+.+..
T Consensus 738 ~GARpL~R~Iq~~i~~~La~~i 759 (786)
T COG0542 738 YGARPLRRAIQQEIEDPLADEI 759 (786)
T ss_pred cCchHHHHHHHHHHHHHHHHHH
Confidence 7788888888877776665543
No 200
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=94.69 E-value=0.26 Score=38.44 Aligned_cols=84 Identities=12% Similarity=0.047 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhCC-CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 3 EVQRTNVPSNSYR-VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 3 ~i~~~F~~A~~~~-P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
.+|++.+.+.-.. ..-++|+++|.+.. ...|.||+.+..=. .++++|..|..+..+.|.++
T Consensus 41 ~iReii~~~~~~~~~~k~iI~~a~~l~~------------~A~NaLLK~LEEPp------~~~~fiL~t~~~~~llpTI~ 102 (206)
T PRK08485 41 DAKEVIAEAYIAESEEKIIVIAAPSYGI------------EAQNALLKILEEPP------KNICFIIVAKSKNLLLPTIR 102 (206)
T ss_pred HHHHHHHHHhhCCCCcEEEEEchHhhCH------------HHHHHHHHHhcCCC------CCeEEEEEeCChHhCchHHH
Confidence 4666666654321 12345777777632 24688998887732 55788888888999999999
Q ss_pred hcccc------------eeeecCCCHHHHHHHHHH
Q psy3540 82 RRFEK------------RVYIPLPNEWARYQLLTL 104 (202)
Q Consensus 82 rrf~~------------~i~i~~P~~~~R~~il~~ 104 (202)
+|... .+.+...+.++-.+.++.
T Consensus 103 SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 103 SRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred hhheeccccccccccccccccCCCCHHHHHHHHHH
Confidence 86643 355666666666666665
No 201
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=94.69 E-value=0.44 Score=42.46 Aligned_cols=69 Identities=19% Similarity=0.242 Sum_probs=45.0
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC----C---CCCCCceEEEEEecCCC-----C---------
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN----S---SLYEDKIIMILAATNHP-----W--------- 74 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~----~---~~~~~~~v~viatTn~~-----~--------- 74 (202)
..+|||||++.+- ..+...|++.|+.-. . ...-..++.+|+++|.- .
T Consensus 296 ~GvLfLDEi~e~~------------~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~ 363 (499)
T TIGR00368 296 NGVLFLDELPEFK------------RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCS 363 (499)
T ss_pred CCeEecCChhhCC------------HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCC
Confidence 4699999998762 234556666564321 0 00012457888998852 1
Q ss_pred ---------CccHHHHhcccceeeecCCCHH
Q psy3540 75 ---------DIDEAFRRRFEKRVYIPLPNEW 96 (202)
Q Consensus 75 ---------~ld~al~rrf~~~i~i~~P~~~ 96 (202)
.+...++.|||..+.++.++..
T Consensus 364 ~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 364 PQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 4778888899999999877644
No 202
>PF05729 NACHT: NACHT domain
Probab=94.51 E-value=0.25 Score=36.26 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=49.5
Q ss_pred HhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhC-CCCCCCCCceEEEEEecCCCCCccHHHHhccc--c
Q psy3540 10 PSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG-LNSSLYEDKIIMILAATNHPWDIDEAFRRRFE--K 86 (202)
Q Consensus 10 ~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~-~~~~~~~~~~v~viatTn~~~~ld~al~rrf~--~ 86 (202)
.+....+.+|+||.+|.+...... .........|...+.. +.. +-+++ .|++ |..... +.+.+. .
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~~~~~----~~~li--it~r-~~~~~~-~~~~~~~~~ 143 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQALPP----GVKLI--ITSR-PRAFPD-LRRRLKQAQ 143 (166)
T ss_pred HHHcCCceEEEEechHhcccchhh----hHHHHHHHHHHHHhhhccCC----CCeEE--EEEc-CChHHH-HHHhcCCCc
Confidence 344566789999999999764322 1112233333334443 121 12333 3332 333333 444332 4
Q ss_pred eeeecCCCHHHHHHHHHHHhcC
Q psy3540 87 RVYIPLPNEWARYQLLTLCLEG 108 (202)
Q Consensus 87 ~i~i~~P~~~~R~~il~~~l~~ 108 (202)
.+.++.-+.+++..+++.++++
T Consensus 144 ~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 144 ILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EEEECCCCHHHHHHHHHHHhhc
Confidence 6888888999999999998864
No 203
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.50 E-value=0.32 Score=41.93 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=67.7
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhC-----CCCCCCCCceEEEEEecCCCCCccHHHHh-------cc
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG-----LNSSLYEDKIIMILAATNHPWDIDEAFRR-------RF 84 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~-----~~~~~~~~~~v~viatTn~~~~ld~al~r-------rf 84 (202)
-++|+|||-.+-+. .-..|+..||. +.+.......|-+|+||+ ..++.+++. ++
T Consensus 175 GtLfLDEI~~LP~~------------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~--~~l~~~~~~g~dl~~rl~ 240 (403)
T COG1221 175 GTLFLDEIHRLPPE------------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATT--EDLEEAVLAGADLTRRLN 240 (403)
T ss_pred CEEehhhhhhCCHh------------HHHHHHHHHHcCceEecCCCCCcCCCceeeeccc--cCHHHHHHhhcchhhhhc
Confidence 48999999877321 23456666665 333222335688888888 455555554 66
Q ss_pred cceeeecCCC--HHHHHHHHHHHhcC----cccCCcccHHHHHHHccCC----CHHHHHHHHHHHHHHHH
Q psy3540 85 EKRVYIPLPN--EWARYQLLTLCLEG----VVIDVNLDFHKISKMLEGY----TGSDIANLARDAAMMSI 144 (202)
Q Consensus 85 ~~~i~i~~P~--~~~R~~il~~~l~~----~~~~~~~~~~~la~~t~g~----s~~dl~~l~~~A~~~a~ 144 (202)
...|.+|+.- .+++..+..++++. .......+..+.......| +-++|+++|.+++..+.
T Consensus 241 ~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 241 ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 6666666542 34566667777753 2222222223333333334 67899999999988874
No 204
>KOG1942|consensus
Probab=94.36 E-value=0.46 Score=39.48 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=55.5
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC-------------CCCccHH
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH-------------PWDIDEA 79 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~-------------~~~ld~a 79 (202)
+.-|.|+||||+.-|- -.-.+.|-..+..--. + +||.+||+ |.-+++.
T Consensus 294 ElvPGVLFIDEVhMLD------------iEcFTyL~kalES~ia------P-ivifAsNrG~~~irGt~d~~sPhGip~d 354 (456)
T KOG1942|consen 294 ELVPGVLFIDEVHMLD------------IECFTYLHKALESPIA------P-IVIFASNRGMCTIRGTEDILSPHGIPPD 354 (456)
T ss_pred hhcCcceEeeehhhhh------------hHHHHHHHHHhcCCCC------c-eEEEecCCcceeecCCcCCCCCCCCCHH
Confidence 4569999999998762 1234555555544333 2 45556664 7788999
Q ss_pred HHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCC
Q psy3540 80 FRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYT 128 (202)
Q Consensus 80 l~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s 128 (202)
++.|+-..-..+.++ ++-++|++...+...+. .+..+.-|+.....-|
T Consensus 355 llDRl~Iirt~~y~~-~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~ts 403 (456)
T KOG1942|consen 355 LLDRLLIIRTLPYDE-EEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTS 403 (456)
T ss_pred HhhheeEEeeccCCH-HHHHHHHHHHHhhhcceecHHHHHHHHhhccchh
Confidence 998875444445444 45556666655433322 2334555665543333
No 205
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=94.22 E-value=0.98 Score=42.90 Aligned_cols=73 Identities=18% Similarity=0.126 Sum_probs=44.7
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC----C---CCCCCceEEEEEecCCCC-------------Cc
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN----S---SLYEDKIIMILAATNHPW-------------DI 76 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~----~---~~~~~~~v~viatTn~~~-------------~l 76 (202)
.+++|||+|.+-. .....|+..|..-. . ...-+.+..||||+|-.+ .+
T Consensus 559 GtL~IDEidkms~------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~L 626 (915)
T PTZ00111 559 GVCCIDELDKCHN------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINI 626 (915)
T ss_pred CeEEecchhhCCH------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCC
Confidence 5889999998732 22345555554321 0 001235678999999742 46
Q ss_pred cHHHHhcccceee-ecCCCHHHHHHH
Q psy3540 77 DEAFRRRFEKRVY-IPLPNEWARYQL 101 (202)
Q Consensus 77 d~al~rrf~~~i~-i~~P~~~~R~~i 101 (202)
++++++|||..+. +..|+.+.=..|
T Consensus 627 p~~LLSRFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 627 SPSLFTRFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred ChHHhhhhcEEEEecCCCChHHHHHH
Confidence 7999999987754 455776544444
No 206
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.83 E-value=0.31 Score=41.60 Aligned_cols=76 Identities=24% Similarity=0.156 Sum_probs=46.1
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecC------------CCCCccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATN------------HPWDIDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn------------~~~~ld~al~r 82 (202)
=|-|+||||++-|=- .-.+.|-..|..-..+ +||.+|| .|.-+|..++.
T Consensus 278 vpGVLFIDEvHmLDi------------EcFsfLnralEs~~sP-------iiIlATNRg~~~irGt~~~sphGiP~DlLD 338 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDI------------ECFSFLNRALESELSP-------IIILATNRGITKIRGTDIISPHGIPLDLLD 338 (398)
T ss_dssp EE-EEEEESGGGSBH------------HHHHHHHHHHTSTT---------EEEEEES-SEEE-BTTS-EEETT--HHHHT
T ss_pred ecceEEecchhhccH------------HHHHHHHHHhcCCCCc-------EEEEecCceeeeccCccCcCCCCCCcchHh
Confidence 389999999988721 1234444445443332 6677777 47788889988
Q ss_pred cccceeeecCCCHHHHHHHHHHHhcCcc
Q psy3540 83 RFEKRVYIPLPNEWARYQLLTLCLEGVV 110 (202)
Q Consensus 83 rf~~~i~i~~P~~~~R~~il~~~l~~~~ 110 (202)
|+ ..|...+-+.++-.+|++..++...
T Consensus 339 Rl-lII~t~py~~~ei~~Il~iR~~~E~ 365 (398)
T PF06068_consen 339 RL-LIIRTKPYSEEEIKQILKIRAKEED 365 (398)
T ss_dssp TE-EEEEE----HHHHHHHHHHHHHHCT
T ss_pred hc-EEEECCCCCHHHHHHHHHhhhhhhc
Confidence 76 4566666788899999998886433
No 207
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=93.80 E-value=2.5 Score=34.55 Aligned_cols=104 Identities=10% Similarity=0.006 Sum_probs=60.5
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhc-----ccceeee
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRR-----FEKRVYI 90 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rr-----f~~~i~i 90 (202)
.-||+|++++.+..+ .....|+..+..... . .++|..++.++.-. .+... -...+.+
T Consensus 47 ~kliii~~~~~~~~~-----------~~~~~L~~~l~~~~~-----~-~~~i~~~~~~~~~~-~~~k~~~~~~~~~~i~~ 108 (302)
T TIGR01128 47 RRLVELRNPEGKPGA-----------KGLKALEEYLANPPP-----D-TLLLIEAPKLDKRK-KLTKWLKALKNAQIVEC 108 (302)
T ss_pred CeEEEEECCCCCCCH-----------HHHHHHHHHHhcCCC-----C-EEEEEecCCCCHhH-HHHHHHHHhcCeeEEEe
Confidence 457888888765321 125567777766543 3 34444554333211 11112 3467888
Q ss_pred cCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHH
Q psy3540 91 PLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARD 138 (202)
Q Consensus 91 ~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~ 138 (202)
+.|+..+...+++..+...+.. +.-.+..|+..+.| ....+.+-+..
T Consensus 109 ~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~-d~~~l~~el~K 156 (302)
T TIGR01128 109 KTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEG-NLLAIAQELEK 156 (302)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCc-HHHHHHHHHHH
Confidence 9999999999999999766543 33456677777643 44444444443
No 208
>PF12846 AAA_10: AAA-like domain
Probab=93.71 E-value=0.25 Score=40.03 Aligned_cols=72 Identities=22% Similarity=0.222 Sum_probs=53.8
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc-----HHHHhcccce
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID-----EAFRRRFEKR 87 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld-----~al~rrf~~~ 87 (202)
...|.++++||+..+.... .....+..++.+..+ .++.++.+|..|..++ ++++.-....
T Consensus 218 ~~~~~~i~iDEa~~~~~~~-------~~~~~~~~~~~~~Rk--------~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~ 282 (304)
T PF12846_consen 218 RGRPKIIVIDEAHNFLSNP-------SGAEFLDELLREGRK--------YGVGLILATQSPSDLPKSPIEDAILANCNTK 282 (304)
T ss_pred CCceEEEEeCCcccccccc-------chhhhhhHHHHHHHh--------cCCEEEEeeCCHHHHhccchHHHHHHhCCcE
Confidence 3679999999999887653 112234455544333 4577889999999999 8888888889
Q ss_pred eeecCCCHHHHH
Q psy3540 88 VYIPLPNEWARY 99 (202)
Q Consensus 88 i~i~~P~~~~R~ 99 (202)
+.+..++.+...
T Consensus 283 i~~~~~~~~~~~ 294 (304)
T PF12846_consen 283 IIFRLEDSDDAE 294 (304)
T ss_pred EEecCChHHHHH
Confidence 999988877776
No 209
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.68 E-value=0.27 Score=40.86 Aligned_cols=71 Identities=11% Similarity=0.109 Sum_probs=50.4
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
..-|++||++|.+. ....+.||..|+.-.. .+++|.+|+.++.|-+.+++|. ..++++.|+
T Consensus 90 ~~KvvII~~~e~m~------------~~a~NaLLK~LEEPp~------~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~ 150 (299)
T PRK07132 90 QKKILIIKNIEKTS------------NSLLNALLKTIEEPPK------DTYFLLTTKNINKVLPTIVSRC-QVFNVKEPD 150 (299)
T ss_pred CceEEEEecccccC------------HHHHHHHHHHhhCCCC------CeEEEEEeCChHhChHHHHhCe-EEEECCCCC
Confidence 34577777766552 2346789988888544 3666667778899999999875 468888888
Q ss_pred HHHHHHHHHH
Q psy3540 95 EWARYQLLTL 104 (202)
Q Consensus 95 ~~~R~~il~~ 104 (202)
.++-...|..
T Consensus 151 ~~~l~~~l~~ 160 (299)
T PRK07132 151 QQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHH
Confidence 8777666554
No 210
>KOG2035|consensus
Probab=93.52 E-value=0.35 Score=39.78 Aligned_cols=91 Identities=19% Similarity=0.218 Sum_probs=67.7
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCHH
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNEW 96 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~~ 96 (202)
-+++|-|+|.|.... -..|-..|..+.+. .-+|..+|....|-+++++|. ..+-+|.|+.+
T Consensus 129 Kvvvi~ead~LT~dA------------Q~aLRRTMEkYs~~------~RlIl~cns~SriIepIrSRC-l~iRvpaps~e 189 (351)
T KOG2035|consen 129 KVVVINEADELTRDA------------QHALRRTMEKYSSN------CRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDE 189 (351)
T ss_pred EEEEEechHhhhHHH------------HHHHHHHHHHHhcC------ceEEEEecCcccchhHHhhhe-eEEeCCCCCHH
Confidence 478889999885321 23455556666654 567788999999999999853 46889999999
Q ss_pred HHHHHHHHHhcCcccC-CcccHHHHHHHccC
Q psy3540 97 ARYQLLTLCLEGVVID-VNLDFHKISKMLEG 126 (202)
Q Consensus 97 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 126 (202)
+-..++...+++..+. +.--+..+|+.++|
T Consensus 190 eI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 190 EITSVLSKVLKKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHHHhcc
Confidence 9999999999776655 33346778888765
No 211
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=92.95 E-value=0.68 Score=38.95 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=61.4
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCC-------CCccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHP-------WDIDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~-------~~ld~al~r 82 (202)
....|||||||.+-.. +-..|+..++.-. +.......+-+|++|+.. ..+.+.|..
T Consensus 93 ~gGtL~Ldei~~L~~~------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~ 160 (329)
T TIGR02974 93 DGGTLFLDELATASLL------------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160 (329)
T ss_pred CCCEEEeCChHhCCHH------------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH
Confidence 4678999999998421 2344555443321 110112447788888763 234456666
Q ss_pred ccc-ceeeecCCC--HHHHHHHHHHHhcCc----ccC--Cccc---HHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 83 RFE-KRVYIPLPN--EWARYQLLTLCLEGV----VID--VNLD---FHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 83 rf~-~~i~i~~P~--~~~R~~il~~~l~~~----~~~--~~~~---~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
||. ..|.+|+.. .+....++++++... ... ..++ +..|....=-=+-.+|++++.+|+..+
T Consensus 161 rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 773 455555443 234455566666422 111 1222 334444432235677888888776654
No 212
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.60 E-value=0.59 Score=38.63 Aligned_cols=57 Identities=18% Similarity=0.263 Sum_probs=43.0
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecC
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPL 92 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~ 92 (202)
-|++||++|.+.. ...|.||+.|..-. .++++|..|++++.|.|.+++|.. .+.|+.
T Consensus 97 kv~ii~~ad~mt~------------~AaNaLLK~LEEPp------~~~~fiL~~~~~~~ll~TI~SRcq-~~~~~~ 153 (290)
T PRK05917 97 KIYIIHEADRMTL------------DAISAFLKVLEDPP------QHGVIILTSAKPQRLPPTIRSRSL-SIHIPM 153 (290)
T ss_pred eEEEEechhhcCH------------HHHHHHHHHhhcCC------CCeEEEEEeCChhhCcHHHHhcce-EEEccc
Confidence 4889999998843 23688999888744 458888899999999999998753 344443
No 213
>PF14516 AAA_35: AAA-like domain
Probab=92.01 E-value=3.5 Score=34.67 Aligned_cols=100 Identities=11% Similarity=0.070 Sum_probs=54.9
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCC---CCce--EEEEEecCCCCCccHHHHh---ccc
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY---EDKI--IMILAATNHPWDIDEAFRR---RFE 85 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~---~~~~--v~viatTn~~~~ld~al~r---rf~ 85 (202)
..|-||+|||+|.++... . +...|+..+........ ...+ ++++++|. ..+....-+ -+.
T Consensus 126 ~~~lVL~iDEiD~l~~~~------~----~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~--~~~~~~~~~SPFNIg 193 (331)
T PF14516_consen 126 DKPLVLFIDEIDRLFEYP------Q----IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTE--DYIILDINQSPFNIG 193 (331)
T ss_pred CCCEEEEEechhhhccCc------c----hHHHHHHHHHHHHHhcccCcccceEEEEEecCcc--cccccCCCCCCcccc
Confidence 589999999999997532 1 12233333332222100 1122 33333322 222222222 445
Q ss_pred ceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCC
Q psy3540 86 KRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYT 128 (202)
Q Consensus 86 ~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s 128 (202)
..+.++.-+.++-..+++.+-.. .. .-.++.|-..|.|.-
T Consensus 194 ~~i~L~~Ft~~ev~~L~~~~~~~--~~-~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 194 QPIELPDFTPEEVQELAQRYGLE--FS-QEQLEQLMDWTGGHP 233 (331)
T ss_pred cceeCCCCCHHHHHHHHHhhhcc--CC-HHHHHHHHHHHCCCH
Confidence 56777766888888888877533 22 223888888888854
No 214
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=91.99 E-value=1.3 Score=38.59 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=61.4
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCC-------CCccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHP-------WDIDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~-------~~ld~al~r 82 (202)
....|||||+|.+-.. +-..|+..++.-. +.......+-+|+||+.. ..+.+.+..
T Consensus 228 ~~gtl~l~ei~~l~~~------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~ 295 (463)
T TIGR01818 228 DGGTLFLDEIGDMPLD------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH 295 (463)
T ss_pred CCCeEEEEchhhCCHH------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH
Confidence 4678999999998432 2334444444211 100011246677887753 234455555
Q ss_pred ccc-ceeeecCCC--HHHHHHHHHHHhcCcccC-----Cccc---HHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 83 RFE-KRVYIPLPN--EWARYQLLTLCLEGVVID-----VNLD---FHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 83 rf~-~~i~i~~P~--~~~R~~il~~~l~~~~~~-----~~~~---~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
|+. ..|++|+.. .+....++++++...... ..++ +..|....=-=+-++|++++.+|+..+
T Consensus 296 rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 296 RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 553 366666554 455666666666432110 1122 333444321123588888888887654
No 215
>PRK14700 recombination factor protein RarA; Provisional
Probab=91.73 E-value=1.2 Score=36.93 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=49.1
Q ss_pred ceEEEEEecCC--CCCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcc------c-CCcccHHHHHHHccCCCHHHH
Q psy3540 62 KIIMILAATNH--PWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV------I-DVNLDFHKISKMLEGYTGSDI 132 (202)
Q Consensus 62 ~~v~viatTn~--~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~------~-~~~~~~~~la~~t~g~s~~dl 132 (202)
+.|++||||.. --.|.+||++|. +++.+..++.++-..+++..+.... + -.+.-+..|+..+. +|.
T Consensus 7 G~i~LIGATTENP~f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~----GDa 81 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNE----GDC 81 (300)
T ss_pred CcEEEEeecCCCccceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcC----CHH
Confidence 56777776643 458999999987 7899999999999999999886311 1 12333556666554 566
Q ss_pred HHHHH
Q psy3540 133 ANLAR 137 (202)
Q Consensus 133 ~~l~~ 137 (202)
+...+
T Consensus 82 R~aLN 86 (300)
T PRK14700 82 RKILN 86 (300)
T ss_pred HHHHH
Confidence 55443
No 216
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=91.59 E-value=0.83 Score=37.14 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=44.9
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCC
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLP 93 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P 93 (202)
--|++|+++|.+-. ...|.||+.++.=. .++++|..|+.++.|.|.+++|... +.++.+
T Consensus 89 ~KV~II~~ae~m~~------------~AaNaLLK~LEEPp------~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 89 KKIYIIYGIEKLNK------------QSANSLLKLIEEPP------KNTYGIFTTRNENNILNTILSRCVQ-YVVLSK 147 (261)
T ss_pred CEEEEeccHhhhCH------------HHHHHHHHhhcCCC------CCeEEEEEECChHhCchHhhhheee-eecCCh
Confidence 46889999888742 24688998887733 5588899999999999999998643 555555
No 217
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.13 E-value=3.3 Score=38.06 Aligned_cols=63 Identities=8% Similarity=0.010 Sum_probs=40.1
Q ss_pred ccHHHHh--cccceeeecCCCHHHHHHHHHHHhcCcc--cC------CcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 76 IDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVV--ID------VNLDFHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 76 ld~al~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~--~~------~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
|.++++. |. .+|.|++.+...-...|+..+.... .. ....+..|+. .+.+||+.++..-...+
T Consensus 256 L~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 256 MNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSS 328 (637)
T ss_pred cCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHH----hCCChHHHHHHHHHHHH
Confidence 3477875 44 4789999999987777777775421 11 1124555665 56779988777555444
No 218
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=90.65 E-value=2.8 Score=35.19 Aligned_cols=116 Identities=13% Similarity=0.056 Sum_probs=60.7
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCC-------CCccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHP-------WDIDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~-------~~ld~al~r 82 (202)
....|||||+|.+-.. +...|+..++.-. +.......+-||+||+.. ..+.+.|..
T Consensus 100 ~gGtL~l~~i~~L~~~------------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~ 167 (326)
T PRK11608 100 DGGTLFLDELATAPML------------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD 167 (326)
T ss_pred CCCeEEeCChhhCCHH------------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH
Confidence 3568999999998431 2344555554321 100011246778887763 345566666
Q ss_pred cc-cceeeecCCCH--HHHHHHHHHHhcCc----ccC--Cccc---HHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 83 RF-EKRVYIPLPNE--WARYQLLTLCLEGV----VID--VNLD---FHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 83 rf-~~~i~i~~P~~--~~R~~il~~~l~~~----~~~--~~~~---~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
|| ...|.+|+... +....++.+|+... ... ..++ +..|....=--+-.+|++++++|+..
T Consensus 168 ~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 168 RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 77 34555544322 23445566665322 111 1222 33444443233668888888887664
No 219
>KOG1969|consensus
Probab=90.50 E-value=3 Score=38.74 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=54.6
Q ss_pred EEEEecCCCCCccHHHHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 65 MILAATNHPWDIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 65 ~viatTn~~~~ld~al~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
-||+.+|. .--|||+- -|...|+|..|....-.+=|+..+.+..+. +|...|+..|+ ++..||++.++.-...
T Consensus 440 PIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfL 514 (877)
T KOG1969|consen 440 PIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFL 514 (877)
T ss_pred CEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHH
Confidence 47788885 44688886 689999999998887777777777544432 45566666665 6678999977776666
Q ss_pred HHH
Q psy3540 143 SIR 145 (202)
Q Consensus 143 a~~ 145 (202)
+..
T Consensus 515 a~~ 517 (877)
T KOG1969|consen 515 ASN 517 (877)
T ss_pred HHh
Confidence 654
No 220
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=89.97 E-value=2.3 Score=36.97 Aligned_cols=114 Identities=21% Similarity=0.249 Sum_probs=59.9
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCCC-------CccHHHHhc
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPW-------DIDEAFRRR 83 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~~-------~ld~al~rr 83 (202)
..+|||||+|.+-.. +-..|+..++.-. +.......+.+|+||+..- .+.+.+..|
T Consensus 238 ~gtl~ld~i~~l~~~------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~ 305 (457)
T PRK11361 238 EGTLLLDEIGEMPLV------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYR 305 (457)
T ss_pred CCEEEEechhhCCHH------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHH
Confidence 458999999998432 2344555554321 1100113477888888631 233444434
Q ss_pred ccceeeecCCCHHHHHH----HHHHHhcCccc----C-Cccc---HHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 84 FEKRVYIPLPNEWARYQ----LLTLCLEGVVI----D-VNLD---FHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 84 f~~~i~i~~P~~~~R~~----il~~~l~~~~~----~-~~~~---~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
+. .+.+.+|...+|.+ +...++..... . ..++ +..|....=--+..+|++++.+|...
T Consensus 306 l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 306 LN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred hc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 42 36666776666643 44455533211 0 1122 33444433234678888888887654
No 221
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=89.82 E-value=0.55 Score=39.53 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=46.6
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCC-------CCceEEEEEecCCCC-------------
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY-------EDKIIMILAATNHPW------------- 74 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~-------~~~~v~viatTn~~~------------- 74 (202)
...|++|||+|.+-.. ....|+..|+.-.-... -+-+.-|+|++|-..
T Consensus 121 d~GiccIDe~dk~~~~------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni 188 (331)
T PF00493_consen 121 DGGICCIDEFDKMKED------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENI 188 (331)
T ss_dssp TTSEEEECTTTT--CH------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT
T ss_pred cCceeeecccccccch------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhc
Confidence 3469999999997321 24566666664211100 123467889988766
Q ss_pred CccHHHHhcccceeee-cCCCHHHHHHHHHHHhcC
Q psy3540 75 DIDEAFRRRFEKRVYI-PLPNEWARYQLLTLCLEG 108 (202)
Q Consensus 75 ~ld~al~rrf~~~i~i-~~P~~~~R~~il~~~l~~ 108 (202)
.+++.+++|||..+.+ ..|+.+.=..+-++.+..
T Consensus 189 ~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 189 NLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp -S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred ccchhhHhhcCEEEEeccccccccccccceEEEec
Confidence 5888999999988765 667877777777766654
No 222
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=89.60 E-value=1.9 Score=34.90 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=51.9
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCC
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLP 93 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P 93 (202)
..+++|+||+++... ....+...+.... .+.-||.||.... +-..+- .-...++++..
T Consensus 100 ~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~~------~~~kilvTTR~~~-v~~~~~-~~~~~~~l~~L 157 (287)
T PF00931_consen 100 DKRCLLVLDDVWDEE--------------DLEELREPLPSFS------SGSKILVTTRDRS-VAGSLG-GTDKVIELEPL 157 (287)
T ss_dssp CTSEEEEEEEE-SHH--------------HH-------HCHH------SS-EEEEEESCGG-GGTTHH-SCEEEEECSS-
T ss_pred cccceeeeeeecccc--------------ccccccccccccc------ccccccccccccc-cccccc-ccccccccccc
Confidence 459999999987642 1222222222111 1234566777643 222121 11578999999
Q ss_pred CHHHHHHHHHHHhcCcc----cCCcccHHHHHHHccCCCHHHHHH
Q psy3540 94 NEWARYQLLTLCLEGVV----IDVNLDFHKISKMLEGYTGSDIAN 134 (202)
Q Consensus 94 ~~~~R~~il~~~l~~~~----~~~~~~~~~la~~t~g~s~~dl~~ 134 (202)
+.++-.++|........ ........++++.+.|+ |--|+.
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~ 201 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKL 201 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 99999999999986543 11122357899998764 444433
No 223
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=89.44 E-value=2.4 Score=36.83 Aligned_cols=116 Identities=20% Similarity=0.174 Sum_probs=61.6
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCC-------CCccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHP-------WDIDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~-------~~ld~al~r 82 (202)
....|||||+|.+-.. +-..|+..++.-. +.......+-+|+||+.. ..+.+.|..
T Consensus 233 ~~gtl~l~~i~~l~~~------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~ 300 (445)
T TIGR02915 233 HGGTLFLDEIGDLPLN------------LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY 300 (445)
T ss_pred CCCEEEEechhhCCHH------------HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH
Confidence 4578999999998431 2344444443211 110011246778888764 234444544
Q ss_pred cccceeeecCCCHHHHHH----HHHHHhcCc----ccC----CcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 83 RFEKRVYIPLPNEWARYQ----LLTLCLEGV----VID----VNLDFHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 83 rf~~~i~i~~P~~~~R~~----il~~~l~~~----~~~----~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
|+. .+.+.+|...+|.+ +.++++... ... +.--+..|....=--+..+|++++.+|+..+
T Consensus 301 ~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 301 RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 442 35556666666654 555555432 111 1223444544443346788889888887643
No 224
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=89.40 E-value=0.51 Score=34.22 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=31.9
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCC-----CCCceEEEEEecCCCC-----CccHHHHhcc
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL-----YEDKIIMILAATNHPW-----DIDEAFRRRF 84 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~-----~~~~~v~viatTn~~~-----~ld~al~rrf 84 (202)
.|+++|||...- .++-+.||+.|..-.-.. .-.++.+||||-|..+ .|++|++.||
T Consensus 64 ~ill~DEiNrap------------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 64 NILLADEINRAP------------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp SEEEEETGGGS-------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred ceeeecccccCC------------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 489999986542 345677777776432210 1125688999999766 6778888777
No 225
>KOG1968|consensus
Probab=88.96 E-value=1.8 Score=41.14 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=66.8
Q ss_pred EEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCHHH
Q psy3540 18 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNEWA 97 (202)
Q Consensus 18 Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~~~ 97 (202)
||+|||+|.++. .. +..+.++-..+.... +-+|.++|.......-.+.+.+.-+.|+.|+..+
T Consensus 431 vil~devD~~~~-~d--------Rg~v~~l~~l~~ks~--------~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~ 493 (871)
T KOG1968|consen 431 LILMDEVDGMFG-ED--------RGGVSKLSSLCKKSS--------RPLVCTCNDRNLPKSRALSRACSDLRFSKPSSEL 493 (871)
T ss_pred EEEEeccccccc-hh--------hhhHHHHHHHHHhcc--------CCeEEEecCCCCccccchhhhcceeeecCCcHHH
Confidence 899999999976 21 112334433333222 2466778876666654444555789999999999
Q ss_pred HHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 98 RYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 98 R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
+..-+..++....+. .+-.+.++.+.+ ++||++....-...
T Consensus 494 i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 494 IRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred HHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 888887777433322 233577777775 88998876654444
No 226
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=88.06 E-value=2.4 Score=36.68 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=54.4
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCCCCccHHHHh-cccc--
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPWDIDEAFRR-RFEK-- 86 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~~~ld~al~r-rf~~-- 86 (202)
.+.+|||||+|.+-.. +-..|+..++.-. +.......+-+|+||+.+- ...+.. +|..
T Consensus 233 ~~gtl~ldei~~l~~~------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~--~~~~~~~~~~~~l 298 (441)
T PRK10365 233 DGGTLFLDEIGDISPM------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL--AAEVNAGRFRQDL 298 (441)
T ss_pred CCCEEEEeccccCCHH------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH--HHHHHcCCchHHH
Confidence 4678999999998542 1234444443211 1100012356777776532 222222 3321
Q ss_pred -----eeeecCCCHHHH----HHHHHHHhcCccc--------CCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 87 -----RVYIPLPNEWAR----YQLLTLCLEGVVI--------DVNLDFHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 87 -----~i~i~~P~~~~R----~~il~~~l~~~~~--------~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
.+.+.+|...+| ..+.+.++..... -+...+..|....=.=+..+|++++++|+..
T Consensus 299 ~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred HHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 355556665555 3455666543210 0112233343333122557777777776543
No 227
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=88.04 E-value=3.6 Score=36.90 Aligned_cols=117 Identities=17% Similarity=0.170 Sum_probs=60.2
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCC-------CCccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHP-------WDIDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~-------~~ld~al~r 82 (202)
....|||||+|.+-.. +-..|+..++.-. +.......+-+|+||+.. ..+.+.|..
T Consensus 290 ~~GtL~ldei~~L~~~------------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~ 357 (534)
T TIGR01817 290 DGGTLFLDEIGEISPA------------FQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY 357 (534)
T ss_pred CCCeEEEechhhCCHH------------HHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH
Confidence 3568999999998431 2344555554311 100001236788887753 123333444
Q ss_pred ccc-ceeeecCCC--HHHHHHHHHHHhcCcc----cCCcc---cHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 83 RFE-KRVYIPLPN--EWARYQLLTLCLEGVV----IDVNL---DFHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 83 rf~-~~i~i~~P~--~~~R~~il~~~l~~~~----~~~~~---~~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
|+. ..|.+|+.. .+....|+++++.... ....+ -+..|....=-=+..+|++++++|+..+
T Consensus 358 rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 358 RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 443 345555443 2444566677765321 11122 2444554432336788888888887543
No 228
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=86.72 E-value=5.4 Score=35.75 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=57.0
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCC-----CCCCCCCceEEEEEecCCCC-------CccHHHHhc
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL-----NSSLYEDKIIMILAATNHPW-------DIDEAFRRR 83 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-----~~~~~~~~~v~viatTn~~~-------~ld~al~rr 83 (202)
...|||||||.+-.. +-..|+..++.- .+.......+-||+||+.+- .+.+.|..|
T Consensus 299 ~GtL~LdeI~~L~~~------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~r 366 (520)
T PRK10820 299 GGSVLLDEIGEMSPR------------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYR 366 (520)
T ss_pred CCEEEEeChhhCCHH------------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhh
Confidence 568999999998432 223444444331 11100113467788877641 233455556
Q ss_pred ccceeeecCCCHHHHH----HHHHHHhcC----cccC-CcccH---HHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 84 FEKRVYIPLPNEWARY----QLLTLCLEG----VVID-VNLDF---HKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 84 f~~~i~i~~P~~~~R~----~il~~~l~~----~~~~-~~~~~---~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
+.. +.+.+|...+|. .++.+++.. .... ..+.- ..|....=--+-.+|++++.+|...
T Consensus 367 L~~-~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 367 LNV-LTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred cCe-eEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 532 555555555544 344455432 2111 12332 3333321112677888888877654
No 229
>KOG0990|consensus
Probab=86.36 E-value=19 Score=30.40 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=48.9
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
.+-.|++||.|+..... -++|-..+..+.. ++.+..-+|+|..+.|+++.||.+ +-+...+
T Consensus 131 ~fKlvILDEADaMT~~A------------QnALRRviek~t~------n~rF~ii~n~~~ki~pa~qsRctr-frf~pl~ 191 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRDA------------QNALRRVIEKYTA------NTRFATISNPPQKIHPAQQSRCTR-FRFAPLT 191 (360)
T ss_pred ceeEEEecchhHhhHHH------------HHHHHHHHHHhcc------ceEEEEeccChhhcCchhhccccc-CCCCCCC
Confidence 67899999999985422 1233334444443 345557789999999999997654 3344445
Q ss_pred HHHHHHHHHHHhcCc
Q psy3540 95 EWARYQLLTLCLEGV 109 (202)
Q Consensus 95 ~~~R~~il~~~l~~~ 109 (202)
...-...+.+++..-
T Consensus 192 ~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 192 MAQQTERQSHIRESE 206 (360)
T ss_pred hhhhhhHHHHHHhcc
Confidence 555556666666543
No 230
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=86.05 E-value=1.1 Score=39.33 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=46.6
Q ss_pred HHHHHHHhhh----CCCe-EEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 4 VQRTNVPSNS----YRVS-TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 4 i~~~F~~A~~----~~P~-Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
+.++|+..=+ -.|- |+||||++.||... . ..++.. +.++-.+-.+ .+|=|...|.+|.+|+.
T Consensus 239 LsELfe~LPEvGD~dkPklVfFfDEAHLLF~da----~----kall~~-ieqvvrLIRS----KGVGv~fvTQ~P~DiP~ 305 (502)
T PF05872_consen 239 LSELFEQLPEVGDLDKPKLVFFFDEAHLLFNDA----P----KALLDK-IEQVVRLIRS----KGVGVYFVTQNPTDIPD 305 (502)
T ss_pred HHHHHHhCccCCCCCCceEEEEEechhhhhcCC----C----HHHHHH-HHHHHHHhhc----cCceEEEEeCCCCCCCH
Confidence 3455555432 2464 57799999998532 1 112222 2222233333 67889999999999999
Q ss_pred HHHh----cccceeeecCC
Q psy3540 79 AFRR----RFEKRVYIPLP 93 (202)
Q Consensus 79 al~r----rf~~~i~i~~P 93 (202)
.++. |+.+.+----|
T Consensus 306 ~VL~QLGnrIQHaLRAfTP 324 (502)
T PF05872_consen 306 DVLGQLGNRIQHALRAFTP 324 (502)
T ss_pred HHHHhhhhHHHHHHhcCCH
Confidence 9998 66555544334
No 231
>KOG0481|consensus
Probab=85.94 E-value=4.5 Score=36.26 Aligned_cols=85 Identities=21% Similarity=0.199 Sum_probs=44.8
Q ss_pred CeEEEEccccccccccCCCCcchHHH-HHHHHHHHHHhCCCCCCCCCceEEEEEecCCC-----------CCcc--HHHH
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASR-RFKAELLIQMDGLNSSLYEDKIIMILAATNHP-----------WDID--EAFR 81 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~-~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~-----------~~ld--~al~ 81 (202)
--|+.|||+|.+-....- .-++... ..++- .-.|+... -+.+--|+|+.|.+ ++|| +.++
T Consensus 429 gGVvCIDEFDKMre~DRV-AIHEAMEQQTISI---AKAGITT~--LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TIL 502 (729)
T KOG0481|consen 429 GGVVCIDEFDKMREDDRV-AIHEAMEQQTISI---AKAGITTT--LNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTIL 502 (729)
T ss_pred CCEEEeehhhccCchhhh-HHHHHHHhhhHHH---hhhcceee--ecchhhhhhhcCCccccccccCCcccccchhhhHh
Confidence 358999999998432110 1112111 11111 11233332 12344577777753 3455 7899
Q ss_pred hcccceeeecCCCHHHHHHHHHHHh
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCL 106 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l 106 (202)
+|||..+-+.---.++|-..+-.+.
T Consensus 503 SRFDmIFIVKD~h~~~~D~~lAkHV 527 (729)
T KOG0481|consen 503 SRFDMIFIVKDEHDEERDITLAKHV 527 (729)
T ss_pred hhccEEEEEeccCcchhhhHHHHHh
Confidence 9999888887654454544444333
No 232
>KOG0482|consensus
Probab=85.22 E-value=3.6 Score=36.78 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=89.1
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-------------CccHHHHhc
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-------------DIDEAFRRR 83 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-------------~ld~al~rr 83 (202)
-|-.|||+|.+...... .-++......-.. .-.|+... -+.+..|+|+.|-.+ .|+.||++|
T Consensus 441 GICCIDEfDKM~e~DRt-AIHEVMEQQTISI--aKAGI~Tt--LNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSR 515 (721)
T KOG0482|consen 441 GICCIDEFDKMDESDRT-AIHEVMEQQTISI--AKAGINTT--LNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSR 515 (721)
T ss_pred ceEeehhhhhhhhhhhH-HHHHHHHhhhhhh--hhhccccc--hhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHh
Confidence 47789999998643321 1122111111000 11233333 234566778877543 588999999
Q ss_pred ccceeee-cCCCHHHHHHHHHHHhcCccc--CCc-----cc------HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHh
Q psy3540 84 FEKRVYI-PLPNEWARYQLLTLCLEGVVI--DVN-----LD------FHKISKMLEGYTGSDIANLARDAAMMSIRRKIM 149 (202)
Q Consensus 84 f~~~i~i-~~P~~~~R~~il~~~l~~~~~--~~~-----~~------~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 149 (202)
||..+.+ ..|+.+.=+.+-++.+--..+ .+. ++ +-.+++.-.-+.+.+|..-+..|.....++..+
T Consensus 516 FDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~ 595 (721)
T KOG0482|consen 516 FDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRREARS 595 (721)
T ss_pred hhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9987766 458887777666665521111 111 22 335666667788888888888887776655433
Q ss_pred cCChh--HHhh------hhhc----cCCCCCcHHHHHHHHHHhC
Q psy3540 150 GQTPA--QIKE------IKQE----DIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 150 ~~~~~--~~~~------~~~~----~~~~~it~~df~~Al~~~~ 181 (202)
..... .... .... -..-.|..+|..+||+-+.
T Consensus 596 ~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 596 SKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 21110 0000 0000 0123578899999998875
No 233
>PRK15115 response regulator GlrR; Provisional
Probab=84.68 E-value=4.6 Score=35.08 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=61.9
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCCCCccHHHHh-ccc---
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPWDIDEAFRR-RFE--- 85 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~~~ld~al~r-rf~--- 85 (202)
....|||||+|.+-.. .-..|+..++.-. +.......+.+|+||+. .++..+.+ +|.
T Consensus 228 ~~gtl~l~~i~~l~~~------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~~~~f~~~l 293 (444)
T PRK15115 228 EGGTLFLDEIGDMPAP------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMARGEFREDL 293 (444)
T ss_pred CCCEEEEEccccCCHH------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHHcCCccHHH
Confidence 3568999999998432 2334444443211 11001125788888885 36665555 552
Q ss_pred ----ceeeecCCCHHHHHH----HHHHHhcCcc------c--CCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 86 ----KRVYIPLPNEWARYQ----LLTLCLEGVV------I--DVNLDFHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 86 ----~~i~i~~P~~~~R~~----il~~~l~~~~------~--~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
..+.+.+|.-.+|.+ ++++++.... . -+..-+..|....=.=+..+|++++++|+..
T Consensus 294 ~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 294 YYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred HHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 245566677777643 4456654321 0 1122344555554233677788888877653
No 234
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=84.41 E-value=11 Score=32.98 Aligned_cols=116 Identities=18% Similarity=0.098 Sum_probs=62.6
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCC-------CCccHHHHhc
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHP-------WDIDEAFRRR 83 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~-------~~ld~al~rr 83 (202)
...+||||+|.+-.. +...|+..++.-. +.......+-+|+||+.. ..+.+.+..|
T Consensus 233 ~Gtl~l~~i~~l~~~------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~ 300 (469)
T PRK10923 233 GGTLFLDEIGDMPLD------------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 (469)
T ss_pred CCEEEEeccccCCHH------------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHH
Confidence 467899999998432 2335555554321 110011346788888753 2455666666
Q ss_pred c-cceeeecCCCH--HHHHHHHHHHhcCcc------c--CCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 84 F-EKRVYIPLPNE--WARYQLLTLCLEGVV------I--DVNLDFHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 84 f-~~~i~i~~P~~--~~R~~il~~~l~~~~------~--~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
| ...|.+|+... +....++.+++.... . .+..-+..|....=--+-.+|++++++|...+
T Consensus 301 l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred hcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 6 34455544322 344446667664321 1 11223445555544446788999998887654
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=84.32 E-value=3.2 Score=29.90 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=19.7
Q ss_pred HHHHhhhCCCeEEEEccccccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~ 30 (202)
.+..+....|.+|+|||+..+...
T Consensus 77 ~~~~~~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 77 AERLRERGGDDLIILDELTRLVRA 100 (165)
T ss_pred HHHHHhCCCCEEEEEEcHHHHHHH
Confidence 456677788999999999998754
No 236
>PHA00012 I assembly protein
Probab=83.95 E-value=2.2 Score=35.96 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh-------cccce
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR-------RFEKR 87 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r-------rf~~~ 87 (202)
.-+|+++||+-..++.|..+... ..-..+.+.. ... .++-+|.+|.+|..+|+.++. |.-+.
T Consensus 81 ~gsLlVlDEaq~~fp~R~~~sk~---p~~vie~l~~---hRh-----~G~DvilITQ~ps~VDs~IR~ll~eH~v~cRRl 149 (361)
T PHA00012 81 KNGLLVLDECGTWFNSRSWNDKE---RQPVIDWFLH---ARK-----LGWDIIFIIQDISIMDKQAREALAEHVVYCRRL 149 (361)
T ss_pred CCcEEEEECcccccCCCCcCcCC---cHHHHHHHHH---hcc-----CCceEEEEcCCHHHHhHHHHHhhhheEEEEEec
Confidence 44799999999999999654321 1112233322 222 456788999999999999985 22233
Q ss_pred eeecCCCHHHHHHHH
Q psy3540 88 VYIPLPNEWARYQLL 102 (202)
Q Consensus 88 i~i~~P~~~~R~~il 102 (202)
=.+..|-...-..++
T Consensus 150 d~~~iP~i~~~~~~~ 164 (361)
T PHA00012 150 DKITIPFIGTLYSVL 164 (361)
T ss_pred cccccceehhHHHHh
Confidence 334555545444444
No 237
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=83.89 E-value=11 Score=33.72 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=61.3
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCCC-------CccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPW-------DIDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~~-------~ld~al~r 82 (202)
....|||||||.+-.. +...|+..++.-. +.......+-+|++|+..- .+.+.|..
T Consensus 281 ~gGtL~ldeI~~L~~~------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~ 348 (509)
T PRK05022 281 DGGTLFLDEIGELPLA------------LQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH 348 (509)
T ss_pred CCCEEEecChhhCCHH------------HHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh
Confidence 3567999999998431 2344455444311 1100113567888887631 23333333
Q ss_pred cccceeeecCCCHHHHH----HHHHHHhcCcc----cC-Cccc---HHHHHHHccCCCHHHHHHHHHHHHHHHH
Q psy3540 83 RFEKRVYIPLPNEWARY----QLLTLCLEGVV----ID-VNLD---FHKISKMLEGYTGSDIANLARDAAMMSI 144 (202)
Q Consensus 83 rf~~~i~i~~P~~~~R~----~il~~~l~~~~----~~-~~~~---~~~la~~t~g~s~~dl~~l~~~A~~~a~ 144 (202)
|+. .+.|.+|.-.+|. .++++++.... .. ..++ +..|....=--+-.+|++++.+|+..+.
T Consensus 349 rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 349 RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 442 3445556555553 44555554321 11 1222 3444444433467899999999887664
No 238
>PRK04841 transcriptional regulator MalT; Provisional
Probab=83.54 E-value=14 Score=35.03 Aligned_cols=98 Identities=11% Similarity=0.077 Sum_probs=54.6
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeec--
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIP-- 91 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~-- 91 (202)
..|.+|+|||++.+-.. .....+..|+ ..... ...+|| +|...-.++-.-++.-+..+.+.
T Consensus 120 ~~~~~lvlDD~h~~~~~--------~~~~~l~~l~---~~~~~-----~~~lv~-~sR~~~~~~~~~l~~~~~~~~l~~~ 182 (903)
T PRK04841 120 HQPLYLVIDDYHLITNP--------EIHEAMRFFL---RHQPE-----NLTLVV-LSRNLPPLGIANLRVRDQLLEIGSQ 182 (903)
T ss_pred CCCEEEEEeCcCcCCCh--------HHHHHHHHHH---HhCCC-----CeEEEE-EeCCCCCCchHhHHhcCcceecCHH
Confidence 67999999999987311 1122334444 33332 233444 55542223221122123344555
Q ss_pred --CCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHH
Q psy3540 92 --LPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGS 130 (202)
Q Consensus 92 --~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~ 130 (202)
.-+.++-.+++...++.. + +..++..|...|+|+-.+
T Consensus 183 ~l~f~~~e~~~ll~~~~~~~-~-~~~~~~~l~~~t~Gwp~~ 221 (903)
T PRK04841 183 QLAFDHQEAQQFFDQRLSSP-I-EAAESSRLCDDVEGWATA 221 (903)
T ss_pred hCCCCHHHHHHHHHhccCCC-C-CHHHHHHHHHHhCChHHH
Confidence 457788888887665432 2 345678899999998754
No 239
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.30 E-value=3.6 Score=33.61 Aligned_cols=86 Identities=22% Similarity=0.273 Sum_probs=48.1
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCC---C----CCCCceEEEEEecCCCC---CccHHHHhcc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNS---S----LYEDKIIMILAATNHPW---DIDEAFRRRF 84 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~---~----~~~~~~v~viatTn~~~---~ld~al~rrf 84 (202)
+.+|+||||+..-.... -+. .. ..+||.++=...+ . +..-..+.+|||++.+. .|++.+.|.|
T Consensus 100 k~lv~fiDDlN~p~~d~--ygt----q~-~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f 172 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDK--YGT----QP-PIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF 172 (272)
T ss_dssp SEEEEEEETTT-S---T--TS------H-HHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE
T ss_pred cEEEEEecccCCCCCCC--CCC----cC-HHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe
Confidence 45799999997754332 111 11 2345554332222 1 01124578889887432 4777777777
Q ss_pred cceeeecCCCHHHHHHHHHHHhcC
Q psy3540 85 EKRVYIPLPNEWARYQLLTLCLEG 108 (202)
Q Consensus 85 ~~~i~i~~P~~~~R~~il~~~l~~ 108 (202)
..+.++.|+.++-..|+..++..
T Consensus 173 -~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 173 -NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp -EEEE----TCCHHHHHHHHHHHH
T ss_pred -EEEEecCCChHHHHHHHHHHHhh
Confidence 48899999999999998888854
No 240
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=83.02 E-value=10 Score=35.23 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=61.2
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCCC--C-----ccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPW--D-----IDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~~--~-----ld~al~r 82 (202)
...+|||||+|.+-. .+-..|+..++.-. +.......+-+|++|+..- . +.+.+..
T Consensus 470 ~~GtL~Ldei~~L~~------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~ 537 (686)
T PRK15429 470 DKSSLFLDEVGDMPL------------ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 537 (686)
T ss_pred CCCeEEEechhhCCH------------HHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh
Confidence 357899999999832 12344555554321 1101124577888887632 1 1112222
Q ss_pred cccceeeecCCCHHHHHH----HHHHHhcCc----ccC----CcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 83 RFEKRVYIPLPNEWARYQ----LLTLCLEGV----VID----VNLDFHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 83 rf~~~i~i~~P~~~~R~~----il~~~l~~~----~~~----~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
|+. .+.+.+|.-.+|.+ ++++++.+. ... +..-+..|....=--+-.+|++++++|+..+
T Consensus 538 ~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 538 RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 331 45566776666644 556665432 111 1222444444433346789999999887654
No 241
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=82.68 E-value=26 Score=29.01 Aligned_cols=41 Identities=15% Similarity=0.052 Sum_probs=29.3
Q ss_pred cceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHcc
Q psy3540 85 EKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLE 125 (202)
Q Consensus 85 ~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 125 (202)
...+.++.|+..+....++..+...+.. ....+..|+..+.
T Consensus 138 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~ 179 (340)
T PRK05574 138 AVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVE 179 (340)
T ss_pred ceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 4678888899999999999999766543 2234566666654
No 242
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.67 E-value=2.4 Score=35.69 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=46.0
Q ss_pred CCeEEEEccccccccccCCCCcc--hHHHHHHHHHHHHHhCCCCCCC-------CCceEEEEEecCCC-------CCccH
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEH--EASRRFKAELLIQMDGLNSSLY-------EDKIIMILAATNHP-------WDIDE 78 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~--~~~~~~~~~ll~~ld~~~~~~~-------~~~~v~viatTn~~-------~~ld~ 78 (202)
+--||||||||.|..+..+.+-. -....+-..||..+.|-..+-+ ++...+-|-|+|-. ..|+.
T Consensus 162 erGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~Glek 241 (408)
T COG1219 162 ERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEK 241 (408)
T ss_pred hCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHH
Confidence 55699999999998766432110 1113466789999888654421 12335555666543 45566
Q ss_pred HHHhccc-ceeeecCC
Q psy3540 79 AFRRRFE-KRVYIPLP 93 (202)
Q Consensus 79 al~rrf~-~~i~i~~P 93 (202)
-+.+|.. ..|-|...
T Consensus 242 iI~~R~~~~~iGF~a~ 257 (408)
T COG1219 242 IIKKRLGKKGIGFGAE 257 (408)
T ss_pred HHHHhccCCccccccc
Confidence 6666663 34445444
No 243
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=82.18 E-value=4.7 Score=28.21 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=29.9
Q ss_pred HHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecC
Q psy3540 6 RTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATN 71 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn 71 (202)
.+.+........+|+|||+|.+. + ..+++.|...++ .. +-.++++|+.+
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~-~----------~~~l~~l~~l~~--~~----~~~vvl~G~~~ 126 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLF-S----------DEFLEFLRSLLN--ES----NIKVVLVGTPE 126 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHH-T----------HHHHHHHHHHTC--SC----BEEEEEEESST
T ss_pred HHHHHHHhcCCeEEEEeChHhcC-C----------HHHHHHHHHHHh--CC----CCeEEEEEChh
Confidence 34444455555699999999975 1 345666666555 21 24577776653
No 244
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=81.83 E-value=11 Score=32.94 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=35.2
Q ss_pred ChHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC
Q psy3540 1 MREVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS 57 (202)
Q Consensus 1 ~k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 57 (202)
||.+..++..|- ++.-+|+|||++.+..-+.. ..-.+..+.+++.+|.+...
T Consensus 226 Lk~L~~~lr~aG-y~GLlI~lDE~e~l~kl~~~----~~R~~~ye~lr~lidd~~~G 277 (416)
T PF10923_consen 226 LKGLARFLRDAG-YKGLLILLDELENLYKLRND----QAREKNYEALRQLIDDIDQG 277 (416)
T ss_pred HHHHHHHHHHcC-CCceEEEEechHHHHhcCCh----HHHHHHHHHHHHHHHHHhcC
Confidence 355566666664 57779999999999765422 11345678888888877653
No 245
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=81.54 E-value=6.1 Score=33.74 Aligned_cols=79 Identities=19% Similarity=0.084 Sum_probs=53.8
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCC-----CCceEEEEEecCCC-------CCccHHHHhcc
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY-----EDKIIMILAATNHP-------WDIDEAFRRRF 84 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~-----~~~~v~viatTn~~-------~~ld~al~rrf 84 (202)
.|+-|+|++.. ...+...||+.++.-.=... -.-..+||++||.. ....+++++|+
T Consensus 238 Gi~~f~Ei~K~------------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~ 305 (361)
T smart00763 238 GILEFVEMFKA------------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRI 305 (361)
T ss_pred ceEEEeehhcC------------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhce
Confidence 46666666543 13577888887774221100 11235889999987 36689999999
Q ss_pred cceeeecCC-CHHHHHHHHHHHhcC
Q psy3540 85 EKRVYIPLP-NEWARYQLLTLCLEG 108 (202)
Q Consensus 85 ~~~i~i~~P-~~~~R~~il~~~l~~ 108 (202)
. .+.+|.| +..+=.+|.+..+++
T Consensus 306 ~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 306 I-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred E-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 8 8999988 667778888888864
No 246
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=80.28 E-value=8.4 Score=27.65 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=11.8
Q ss_pred CCeEEEEccccccc
Q psy3540 15 RVSTIFIDEVDSLC 28 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~ 28 (202)
.+..|||+|+|.+-
T Consensus 69 ~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 69 KGGTLYLKNIDRLS 82 (138)
T ss_dssp TTSEEEEECGCCS-
T ss_pred CCCEEEECChHHCC
Confidence 67799999999984
No 247
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=80.18 E-value=2.6 Score=32.55 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=20.1
Q ss_pred HHHHHHHhhhCCCeEEEEcccccccc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCS 29 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~ 29 (202)
+..+...+.+..|.+|+||-+.+++.
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 44555556667899999999999875
No 248
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=80.15 E-value=5.9 Score=36.71 Aligned_cols=82 Identities=17% Similarity=0.189 Sum_probs=49.1
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhC----CCCCC---CCCceEEEEEecCCCC-------------
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG----LNSSL---YEDKIIMILAATNHPW------------- 74 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~----~~~~~---~~~~~v~viatTn~~~------------- 74 (202)
.+.|..|||+|.+-.. -.+.+...|.. +.+.. .-+.+--|+||+|-..
T Consensus 383 D~Gv~cIDEfdKm~~~------------dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI 450 (682)
T COG1241 383 DGGVCCIDEFDKMNEE------------DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENI 450 (682)
T ss_pred cCCEEEEEeccCCChH------------HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhc
Confidence 4678999999986211 12333333332 11110 0123455778888766
Q ss_pred CccHHHHhcccceeeecC-CCHHHHHHHHHHHhcC
Q psy3540 75 DIDEAFRRRFEKRVYIPL-PNEWARYQLLTLCLEG 108 (202)
Q Consensus 75 ~ld~al~rrf~~~i~i~~-P~~~~R~~il~~~l~~ 108 (202)
++++.|++|||..+-+.- |+.+.=+.+-.+.+..
T Consensus 451 ~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 451 NLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred CCChhHHhhCCeeEEecCCCCccchHHHHHHHHHH
Confidence 578999999998777644 7776666666666643
No 249
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=78.90 E-value=36 Score=28.20 Aligned_cols=106 Identities=9% Similarity=0.052 Sum_probs=54.4
Q ss_pred HHHHHHhhhC----CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCC---cc
Q psy3540 5 QRTNVPSNSY----RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWD---ID 77 (202)
Q Consensus 5 ~~~F~~A~~~----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~---ld 77 (202)
..++..+... .+-+|++++.+.+-.. .......|...+.+... ..++|+.+++.++. +.
T Consensus 47 ~~~~~~~~t~pff~~~rlVvv~~~~~~~~~---------~~~~~~~L~~~l~~~~~-----~~~li~~~~~~~d~r~k~~ 112 (326)
T PRK07452 47 IQALNEAMTPPFGSGGRLVWLKNSPLCQGC---------SEELLAELERTLPLIPE-----NTHLLLTNTKKPDGRLKST 112 (326)
T ss_pred HHHHHHhcCCCCCCCceEEEEeCchhhccC---------CHHHHHHHHHHHcCCCC-----CcEEEEEeCCCcchHHHHH
Confidence 4455554322 3456777776443211 12345567777776544 44566555544332 22
Q ss_pred HHHHhcccceeeecCC---CHHHHHHHHHHHhcCcccC-CcccHHHHHHHcc
Q psy3540 78 EAFRRRFEKRVYIPLP---NEWARYQLLTLCLEGVVID-VNLDFHKISKMLE 125 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P---~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~ 125 (202)
..+. .+..+..+..| +.++....++..+...+.. +.-.+..|+..+.
T Consensus 113 k~l~-k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g 163 (326)
T PRK07452 113 KLLQ-KLAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVG 163 (326)
T ss_pred HHHH-HceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 2232 34446666554 4455667777777655543 2334566666654
No 250
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=78.49 E-value=6.6 Score=29.13 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=27.9
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
..|+++++||...=.. ......+...+...... +. .+|.+|..++...
T Consensus 98 ~~~~llllDEp~~gld-------~~~~~~l~~~l~~~~~~--~~-------~vii~TH~~~~~~ 145 (162)
T cd03227 98 KPRPLYILDEIDRGLD-------PRDGQALAEAILEHLVK--GA-------QVIVITHLPELAE 145 (162)
T ss_pred CCCCEEEEeCCCCCCC-------HHHHHHHHHHHHHHHhc--CC-------EEEEEcCCHHHHH
Confidence 3789999999865332 22223455555554443 22 5667888766443
No 251
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=78.46 E-value=3.1 Score=32.62 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=26.9
Q ss_pred hhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCC-C------CCceEEEEEecCC
Q psy3540 12 NSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL-Y------EDKIIMILAATNH 72 (202)
Q Consensus 12 ~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~-~------~~~~v~viatTn~ 72 (202)
.++. -|||+||+-.+ ...++..|+.-|+.-.-.. + =..+.++|+|+|-
T Consensus 104 lAh~-GVLflDE~~ef------------~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 104 LAHR-GVLFLDELNEF------------DRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp GGTT-SEEEECETTTS-------------HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred HhcC-CEEEechhhhc------------CHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecc
Confidence 3444 49999998655 2457888888776421100 0 0134678888874
No 252
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=78.43 E-value=7.1 Score=30.92 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=33.0
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
+.+..+++.|. .|+++++||+-.=.. . .....+...++..+.... +..+|.+|..++..+
T Consensus 99 ~~~~~il~~~~--~~sLvllDE~~~gT~-----~--~d~~~i~~~il~~l~~~~-------~~~~i~~TH~~~l~~ 158 (222)
T cd03287 99 SETSHILSNCT--SRSLVILDELGRGTS-----T--HDGIAIAYATLHYLLEEK-------KCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHHHHHHhCC--CCeEEEEccCCCCCC-----h--hhHHHHHHHHHHHHHhcc-------CCeEEEEcccHHHHH
Confidence 55667777664 689999999744211 1 111222234444443322 235777888877543
No 253
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=76.95 E-value=6.1 Score=30.33 Aligned_cols=45 Identities=24% Similarity=0.430 Sum_probs=24.5
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
++++|||.|.-+-. . ....|+..+..+.. .++=||.||..|.-||
T Consensus 259 ~illiDEpE~~LHp-------~----~q~~l~~~l~~~~~-----~~~QviitTHSp~ild 303 (303)
T PF13304_consen 259 SILLIDEPENHLHP-------S----WQRKLIELLKELSK-----KNIQVIITTHSPFILD 303 (303)
T ss_dssp SEEEEESSSTTSSH-------H----HHHHHHHHHHHTGG-----GSSEEEEEES-GGG--
T ss_pred eEEEecCCcCCCCH-------H----HHHHHHHHHHhhCc-----cCCEEEEeCccchhcC
Confidence 89999999986531 2 22333333333332 1234678999887664
No 254
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.46 E-value=4.5 Score=31.28 Aligned_cols=66 Identities=15% Similarity=0.064 Sum_probs=36.2
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEK 86 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~ 86 (202)
.+..|-...|.++++||--.=+ .......+..++..+. . .+..+|.+|.+++.++. +.
T Consensus 137 ~la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~---~-----~~~tiii~sH~~~~~~~------~~ 194 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAAL--------DAAAVALFAELIRAHL---A-----QGGIVIAATHIPLGLPG------AR 194 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHH---H-----CCCEEEEEeCCchhhcc------Cc
Confidence 3455556789999999954322 1112222333333332 1 12357778888777765 55
Q ss_pred eeeecCCC
Q psy3540 87 RVYIPLPN 94 (202)
Q Consensus 87 ~i~i~~P~ 94 (202)
.+.+..|.
T Consensus 195 ~~~~~~~~ 202 (207)
T PRK13539 195 ELDLGPFA 202 (207)
T ss_pred EEeecCcc
Confidence 56665554
No 255
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=76.30 E-value=24 Score=32.38 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=57.1
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-CCCCC----CceEEEEEecCCCC-------CccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-SSLYE----DKIIMILAATNHPW-------DIDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-~~~~~----~~~v~viatTn~~~-------~ld~al~r 82 (202)
....|||||||.+-.. +-..|+..++.-. ...+. .-.+-+|+||+..- .+.+.|.-
T Consensus 416 ~~GtL~ldei~~l~~~------------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~ 483 (638)
T PRK11388 416 HGGTLFLEKVEYLSPE------------LQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY 483 (638)
T ss_pred CCCEEEEcChhhCCHH------------HHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhh
Confidence 3568999999987321 2334444443211 00000 12467888888632 11222222
Q ss_pred cccceeeecCCCHHHHH----HHHHHHhcCc----ccC---CcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 83 RFEKRVYIPLPNEWARY----QLLTLCLEGV----VID---VNLDFHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 83 rf~~~i~i~~P~~~~R~----~il~~~l~~~----~~~---~~~~~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
|+ ..+.+.+|...+|. .+++.++... ... +..-+..|....=.=+.++|+++++.|...
T Consensus 484 ~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 484 AL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred hh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHh
Confidence 33 24566666666663 3455555432 111 122244444444223567888888877654
No 256
>KOG0745|consensus
Probab=76.21 E-value=6.8 Score=34.46 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=45.2
Q ss_pred CCCeEEEEccccccccccCCCC-c-chHHHHHHHHHHHHHhCCCCCC-------CCCceEEEEEecCCC-------CCcc
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDS-E-HEASRRFKAELLIQMDGLNSSL-------YEDKIIMILAATNHP-------WDID 77 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~-~-~~~~~~~~~~ll~~ld~~~~~~-------~~~~~v~viatTn~~-------~~ld 77 (202)
.+--||||||+|.|..+..+-+ . .-....+-..||+.+.|-.-+- ......+.|-|||-. ..||
T Consensus 290 AQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ld 369 (564)
T KOG0745|consen 290 AQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLD 369 (564)
T ss_pred HhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchH
Confidence 3556999999999984432211 1 0111345567888777632211 112334455555543 4677
Q ss_pred HHHHhcc-cceeeecCC
Q psy3540 78 EAFRRRF-EKRVYIPLP 93 (202)
Q Consensus 78 ~al~rrf-~~~i~i~~P 93 (202)
.-+-||. ++.+=|..|
T Consensus 370 k~I~rR~~d~slGFg~~ 386 (564)
T KOG0745|consen 370 KIISRRLDDKSLGFGAP 386 (564)
T ss_pred HHHHHhhcchhcccCCC
Confidence 7777755 566777777
No 257
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=75.42 E-value=8.3 Score=30.44 Aligned_cols=62 Identities=15% Similarity=0.006 Sum_probs=33.9
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
+.++.+++.| ..|++++|||+-.= . +......+...++..+.... +..+|.+|...+.....
T Consensus 98 ~~~~~il~~~--~~~sLvLlDE~~~G-----t--~~~dg~~la~ail~~L~~~~-------~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 98 SETANILRHA--TPDSLVILDELGRG-----T--STHDGYAIAHAVLEYLVKKV-------KCLTLFSTHYHSLCDEF 159 (218)
T ss_pred HHHHHHHHhC--CCCeEEEEecccCC-----C--CchHHHHHHHHHHHHHHHhc-------CCcEEEEeccHHHHHHh
Confidence 5566777776 47999999996331 1 11112233334344443321 23566788876655443
No 258
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=75.29 E-value=9.8 Score=30.36 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=34.2
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
+.+..++..+. ..++|+|||+=. +........+...++..+....+ ..++.+|+..+-...
T Consensus 111 ~~~~~il~~~~--~~sLvliDE~g~-------gT~~~eg~ai~~aile~l~~~~~-------~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 111 KRLSSILRNAT--EKSLVLIDELGR-------GTNPEEGIAIAIAILEYLLEKSG-------CFVIIATHFHELAEL 171 (235)
T ss_dssp HHHHHHHHH----TTEEEEEESTTT-------TSSHHHHHHHHHHHHHHHHHTTT--------EEEEEES-GGGGGH
T ss_pred HHHHhhhhhcc--cceeeecccccC-------CCChhHHHHHHHHHHHHHHHhcc-------ccEEEEeccchhHHH
Confidence 56777777765 578999999722 12222333455556665554222 367889998765443
No 259
>PRK10263 DNA translocase FtsK; Provisional
Probab=73.38 E-value=8.3 Score=38.29 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=51.6
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC--CccHHHHhcccceeeecCCC
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW--DIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~--~ld~al~rrf~~~i~i~~P~ 94 (202)
-||+|||+..|....+ . . +..++..|-..... -+|.+|.+|.+|+ .|...++.-|..+|.+..-+
T Consensus 1142 IVVIIDE~AdLm~~~~----k----e-vE~lI~rLAqkGRA----aGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS 1208 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG----K----K-VEELIARLAQKARA----AGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSS 1208 (1355)
T ss_pred EEEEEcChHHHHhhhh----H----H-HHHHHHHHHHHhhh----cCeEEEEEecCcccccchHHHHhhccceEEEEcCC
Confidence 4799999977764321 1 1 22333333333322 6799999999997 56666777899999999999
Q ss_pred HHHHHHHHHH
Q psy3540 95 EWARYQLLTL 104 (202)
Q Consensus 95 ~~~R~~il~~ 104 (202)
...-..||-.
T Consensus 1209 ~~DSrtILd~ 1218 (1355)
T PRK10263 1209 KIDSRTILDQ 1218 (1355)
T ss_pred HHHHHHhcCC
Confidence 9888888743
No 260
>KOG0732|consensus
Probab=73.35 E-value=3.1 Score=40.22 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR 82 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r 82 (202)
+|-.+|..|+..+||||||-++|........ .+...|+..++..... ..|..+-+-+.-+--++
T Consensus 641 ~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~--------s~~~~~~~~l~~~~~~----t~i~e~~t~~~~~~~~~---- 704 (1080)
T KOG0732|consen 641 EIVHIFMEARKTTPSIVFIPNVDEWARVIPV--------SFLEEFLSSLDEKALS----TPILELHTWDTSFESVN---- 704 (1080)
T ss_pred HHHHHHHHHhccCCceeeccchhhhhhcCcc--------hhhhcchhcchhhhhc----cchhhhccccccccccC----
Confidence 5778999999999999999999987654421 2344455444443332 22332222111100000
Q ss_pred cccceeeecCCCHHHHHHHHHHHhcC
Q psy3540 83 RFEKRVYIPLPNEWARYQLLTLCLEG 108 (202)
Q Consensus 83 rf~~~i~i~~P~~~~R~~il~~~l~~ 108 (202)
...+.+..|....+...++..++.
T Consensus 705 --~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 705 --KSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred --ccccccccchhhhhHHHHHHHHHH
Confidence 234556678888888877777753
No 261
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=72.60 E-value=20 Score=32.02 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=61.6
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHH-HHhCCCCCCCCCceEEEEEecCCCCCccHHHHh-ccc-------ce
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLI-QMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR-RFE-------KR 87 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~-~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r-rf~-------~~ 87 (202)
.-+|+|||--+- -....+++-.|.. ++..+.+...-.=.|-|||+||+ +|-.+++. +|- .+
T Consensus 319 GTLFLDEIGelP--------L~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNR--DL~~~V~~G~FRaDLYyRLsV 388 (550)
T COG3604 319 GTLFLDEIGELP--------LALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNR--DLEEMVRDGEFRADLYYRLSV 388 (550)
T ss_pred CeEechhhccCC--------HHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccch--hHHHHHHcCcchhhhhhcccc
Confidence 468999985441 1222233333332 24444443111134889999996 56667765 442 24
Q ss_pred eeecCCCHHHHH----HHHHHHhcC----cccC-Ccc---cHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 88 VYIPLPNEWARY----QLLTLCLEG----VVID-VNL---DFHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 88 i~i~~P~~~~R~----~il~~~l~~----~~~~-~~~---~~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
+.+.+|..-+|. .+-.+|+.+ .+.. -.+ -++.|.+..=-=+-++|++++.+|+..|
T Consensus 389 ~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 389 FPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 445556554443 233444432 2221 111 2334444332225689999999999988
No 262
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=72.57 E-value=5.1 Score=34.25 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=43.4
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC-CCCccH-HHHh-cccceeeecC
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH-PWDIDE-AFRR-RFEKRVYIPL 92 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~-~~~ld~-al~r-rf~~~i~i~~ 92 (202)
-.||+|||+..-=. ++ -.++..|+..+=. .+|++|+|+|+ |+.|-+ .+.| +|-
T Consensus 128 ~~lLcfDEF~V~Di-----aD----Amil~rLf~~l~~--------~gvvlVaTSN~~P~~Ly~~gl~r~~Fl------- 183 (362)
T PF03969_consen 128 SRLLCFDEFQVTDI-----AD----AMILKRLFEALFK--------RGVVLVATSNRPPEDLYKNGLQRERFL------- 183 (362)
T ss_pred CCEEEEeeeeccch-----hH----HHHHHHHHHHHHH--------CCCEEEecCCCChHHHcCCcccHHHHH-------
Confidence 34999999876311 11 2344555544421 56899999998 444332 2222 332
Q ss_pred CCHHHHHHHHHHHhcCcccCCcccHHHHH
Q psy3540 93 PNEWARYQLLTLCLEGVVIDVNLDFHKIS 121 (202)
Q Consensus 93 P~~~~R~~il~~~l~~~~~~~~~~~~~la 121 (202)
--..+|+..+.-..+++..|+....
T Consensus 184 ----p~I~~l~~~~~vv~ld~~~DyR~~~ 208 (362)
T PF03969_consen 184 ----PFIDLLKRRCDVVELDGGVDYRRRG 208 (362)
T ss_pred ----HHHHHHHhceEEEEecCCCchhhhc
Confidence 1245566666666666667765543
No 263
>KOG1051|consensus
Probab=72.32 E-value=7.3 Score=37.21 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=58.3
Q ss_pred HHHHHHHHhh-hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC-----CCc
Q psy3540 3 EVQRTNVPSN-SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP-----WDI 76 (202)
Q Consensus 3 ~i~~~F~~A~-~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~-----~~l 76 (202)
.++.+-+.+. .....|+||||++.+.+.....+ . ....+ +|..+-. . +.+-+||||..- -.-
T Consensus 267 rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-~---~d~~n-lLkp~L~---r----g~l~~IGatT~e~Y~k~iek 334 (898)
T KOG1051|consen 267 RLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-A---IDAAN-LLKPLLA---R----GGLWCIGATTLETYRKCIEK 334 (898)
T ss_pred HHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-H---HHHHH-hhHHHHh---c----CCeEEEecccHHHHHHHHhh
Confidence 3555666665 33567899999999988664411 1 11122 2222211 1 337888988742 245
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHHHHHhcC
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEG 108 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il~~~l~~ 108 (202)
||++-|||+ -+.++.|+.+.-..||+..-.+
T Consensus 335 dPalErrw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 335 DPALERRWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred CcchhhCcc-eeEeccCcccchhhhhhhhhhh
Confidence 789999997 4567889887777777776655
No 264
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=71.99 E-value=15 Score=33.20 Aligned_cols=43 Identities=23% Similarity=0.205 Sum_probs=24.0
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW 74 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~ 74 (202)
..| .|+|||+|+=.+. .....+...|..+..- . =|++-|..|.
T Consensus 453 ~~p-tlIFDEVD~GIsG--------~~A~aVg~~L~~Ls~~-------~--QVl~VTHlPQ 495 (557)
T COG0497 453 DTP-TLIFDEVDTGISG--------RVAQAVGKKLRRLSEH-------H--QVLCVTHLPQ 495 (557)
T ss_pred CCC-eEEEecccCCCCh--------HHHHHHHHHHHHHhcC-------c--eEEEEecHHH
Confidence 357 7778999984432 2233455555554432 2 2556677655
No 265
>COG3899 Predicted ATPase [General function prediction only]
Probab=70.76 E-value=45 Score=32.00 Aligned_cols=116 Identities=12% Similarity=0.061 Sum_probs=68.2
Q ss_pred HhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcc-ccee
Q psy3540 10 PSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRF-EKRV 88 (202)
Q Consensus 10 ~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf-~~~i 88 (202)
.+.+..|-|||+|+++..=+ .+-.++..++..+. +-.. . .+-+....+..+ .+.+..++.- -..|
T Consensus 149 ~~~~~~plVi~leDlhWaD~---------~SL~lL~~lm~~~~-~~~~--~-~n~v~~~h~~~~-~~~~~~~~~~~i~~I 214 (849)
T COG3899 149 FTAEEHPLVIVLEDLHWADS---------ASLKLLQLLMDRIA-IGAY--R-DNEVLLLHPLRP-TLGEILKSATNITTI 214 (849)
T ss_pred HHhccCCeEEEEecccccCh---------hHHHHHHHHHHhcc-hhhh--h-ccccccCCCccc-hhhHHhhcCCceeEE
Confidence 34555699999999988621 11223333333332 0010 0 112223333333 2333333322 2678
Q ss_pred eecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 89 YIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 89 ~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
.+.+.+..+-..++...++.....+.-....+.++|.| +|--+.++++-..
T Consensus 215 ~L~PL~~~d~~~lV~~~l~~~~~~~~p~~~~i~~kt~G-nPfFi~e~lk~l~ 265 (849)
T COG3899 215 TLAPLSRADTNQLVAATLGCTKLLPAPLLELIFEKTKG-NPFFIEEFLKALY 265 (849)
T ss_pred ecCcCchhhHHHHHHHHhCCcccccchHHHHHHHHhcC-CCccHHHHHHHHH
Confidence 88888999999999999976433334457789999999 8888888776443
No 266
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=70.69 E-value=14 Score=31.66 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCC--CCcchHHHHHHHHHHHHHh
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMD 52 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~--~~~~~~~~~~~~~ll~~ld 52 (202)
++..+++......|.+|+||++-.+...... .+.....+.++..|.....
T Consensus 146 ~le~I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak 197 (372)
T cd01121 146 NLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAK 197 (372)
T ss_pred cHHHHHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHH
Confidence 3566777778889999999999998754321 1222333344455554444
No 267
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=70.69 E-value=11 Score=28.45 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=17.7
Q ss_pred HHHHHHHhhh-CCCeEEEEccccccccc
Q psy3540 4 VQRTNVPSNS-YRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 4 i~~~F~~A~~-~~P~Ii~iDeiD~l~~~ 30 (202)
++++.+.++. +.|.+|+||.+..+...
T Consensus 129 ~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 129 LEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred HHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 5677777777 78999999999999876
No 268
>PRK08116 hypothetical protein; Validated
Probab=70.69 E-value=11 Score=30.77 Aligned_cols=72 Identities=11% Similarity=0.086 Sum_probs=37.5
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC-CC----ccHHHHhcc---cc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP-WD----IDEAFRRRF---EK 86 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~-~~----ld~al~rrf---~~ 86 (202)
...+|+|||+...- ..+ .....|...++..... +..+|.|||.+ +. ++..+..|+ ..
T Consensus 178 ~~dlLviDDlg~e~-------~t~---~~~~~l~~iin~r~~~-----~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~ 242 (268)
T PRK08116 178 NADLLILDDLGAER-------DTE---WAREKVYNIIDSRYRK-----GLPTIVTTNLSLEELKNQYGKRIYDRILEMCT 242 (268)
T ss_pred CCCEEEEecccCCC-------CCH---HHHHHHHHHHHHHHHC-----CCCEEEECCCCHHHHHHHHhHHHHHHHHHcCE
Confidence 45699999985421 111 2234555666654332 12366677764 33 355666664 33
Q ss_pred eeeecCCCHHHHHHHHH
Q psy3540 87 RVYIPLPNEWARYQLLT 103 (202)
Q Consensus 87 ~i~i~~P~~~~R~~il~ 103 (202)
.|.++-|+. |..+.+
T Consensus 243 ~v~~~g~d~--R~~~~~ 257 (268)
T PRK08116 243 PVENEGKSY--RKEIAK 257 (268)
T ss_pred EEEeeCcCh--hHHHHH
Confidence 455555553 444433
No 269
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=70.26 E-value=11 Score=29.26 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=34.7
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
+.++++++.+....|.++++||.-+= -+......+...++..+... +..+|.+|..++.+.
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~~g-------lD~~~~~~l~~~ll~~l~~~--------~~tiiivTH~~~~~~ 152 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIFKG-------TNSRERQAASAAVLKFLKNK--------NTIGIISTHDLELAD 152 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecccCC-------CCHHHHHHHHHHHHHHHHHC--------CCEEEEEcCcHHHHH
Confidence 35667777776668999999996221 11111122334455554321 235777888766553
No 270
>KOG2383|consensus
Probab=69.68 E-value=6.7 Score=34.04 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=62.3
Q ss_pred ceEEEEEecCC-CCCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccC----CCHH-HHHHH
Q psy3540 62 KIIMILAATNH-PWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEG----YTGS-DIANL 135 (202)
Q Consensus 62 ~~v~viatTn~-~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g----~s~~-dl~~l 135 (202)
.+||++||+|+ |+.|-..=+ .+...+| -..+|+..+.-..+++.+|+. ....+.| |.+. |...+
T Consensus 223 ~GvVlvATSNR~P~dLYknGl---QR~~F~P------fI~~L~~rc~vi~ldS~vDYR-~~~~~~~~~~yf~~~~d~~~~ 292 (467)
T KOG2383|consen 223 NGVVLVATSNRAPEDLYKNGL---QRENFIP------FIALLEERCKVIQLDSGVDYR-RKAKSAGENYYFISETDVETV 292 (467)
T ss_pred CCeEEEEeCCCChHHHhhcch---hhhhhhh------HHHHHHHhheEEecCCccchh-hccCCCCceeEecChhhHHHH
Confidence 56999999998 565554222 2222222 356788888888888889998 3333332 3344 77777
Q ss_pred HHHHHHHHHHHHHhcCC-----------------hhHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 136 ARDAAMMSIRRKIMGQT-----------------PAQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 136 ~~~A~~~a~~~~~~~~~-----------------~~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
+++--...+.....+.. ++...-..++.+..|+...|+..-.+.+-
T Consensus 293 l~~~fk~~~~dq~d~~~~~~l~v~GR~l~vpk~cg~VA~ftFeeLC~rPlgAaDYL~lak~fh 355 (467)
T KOG2383|consen 293 LKEWFKLLAADQNDGTRQRTLVVFGRKLIVPKACGGVADFTFEELCGRPLGAADYLGLAKNFH 355 (467)
T ss_pred HHHHHHHHhccCCCCCCCcceeeecceEEecccCCCcccccHHHHhCCccchHHHHHHHhhcc
Confidence 76654322211110000 00011122456678899999988888654
No 271
>KOG0478|consensus
Probab=68.74 E-value=43 Score=31.26 Aligned_cols=79 Identities=23% Similarity=0.289 Sum_probs=44.4
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHH------HhCCCCCCCCCceEEEEEecCCCC-------------Ccc
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQ------MDGLNSSLYEDKIIMILAATNHPW-------------DID 77 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~------ld~~~~~~~~~~~v~viatTn~~~-------------~ld 77 (202)
-|-.|||+|.+-.+. +.++.+.+++ ..|+-.. -+.+--|+|+.|-.. .|+
T Consensus 528 GiCCIDEFDKM~dSt---------rSvLhEvMEQQTvSIAKAGII~s--LNAR~SVLAaANP~~skynp~k~i~eNI~Lp 596 (804)
T KOG0478|consen 528 GICCIDEFDKMSDST---------RSVLHEVMEQQTLSIAKAGIIAS--LNARCSVLAAANPIRSKYNPNKSIIENINLP 596 (804)
T ss_pred ceEEchhhhhhhHHH---------HHHHHHHHHHhhhhHhhcceeee--ccccceeeeeeccccccCCCCCchhhccCCC
Confidence 467899999983211 2233333322 2233322 123456888988321 478
Q ss_pred HHHHhcccceeee-cCCCHHHHHHHHHHHh
Q psy3540 78 EAFRRRFEKRVYI-PLPNEWARYQLLTLCL 106 (202)
Q Consensus 78 ~al~rrf~~~i~i-~~P~~~~R~~il~~~l 106 (202)
|.|++|||.++.+ ..||+..=..|-.+..
T Consensus 597 ptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 597 PTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred hhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 9999999987654 5566653344444444
No 272
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=68.34 E-value=5.2 Score=31.27 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=40.5
Q ss_pred CCCeEEEEcccccccccc-CCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc-----HH----HHhc
Q psy3540 14 YRVSTIFIDEVDSLCSMR-GSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID-----EA----FRRR 83 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r-~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld-----~a----l~rr 83 (202)
..|.+|+||.+.+++... ....+.....+.+..++..|..+... .++.||.|.......+ ++ +-.-
T Consensus 106 ~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~----~~v~vi~tnq~~~~~~~~~~~~~gg~~~~~~ 181 (225)
T PRK09361 106 ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARK----HDLAVVITNQVYSDIDSDGLRPLGGHTLEHW 181 (225)
T ss_pred hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHH----hCCEEEEEccceecCCCCcccCCCcchhhhh
Confidence 689999999999987542 11112222223344443333333322 3455555433322222 22 1123
Q ss_pred ccceeeecCCCHHHHH
Q psy3540 84 FEKRVYIPLPNEWARY 99 (202)
Q Consensus 84 f~~~i~i~~P~~~~R~ 99 (202)
.+..+.+..+....|.
T Consensus 182 ~d~ii~l~~~~~~~r~ 197 (225)
T PRK09361 182 SKTILRLEKFRNGKRR 197 (225)
T ss_pred ccEEEEEEEccCCeEE
Confidence 4557777766555554
No 273
>KOG1051|consensus
Probab=68.16 E-value=13 Score=35.49 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=35.5
Q ss_pred HHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCC-----CCceEEEEEecCC
Q psy3540 6 RTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY-----EDKIIMILAATNH 72 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~-----~~~~v~viatTn~ 72 (202)
.+.+..+...-|||+|||||.= ...+.+.|++.+|.-.-.-. .-.+++||+|+|.
T Consensus 651 ~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 651 QLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred HHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 4445555555599999999862 13467888888875332210 1256899999876
No 274
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=67.79 E-value=90 Score=31.03 Aligned_cols=90 Identities=16% Similarity=0.130 Sum_probs=52.4
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh--cccceeeec
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR--RFEKRVYIP 91 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r--rf~~~i~i~ 91 (202)
.++.+|++|++|.. .....|....+.. + .+.-||.||.. ..+.+ ..++.++++
T Consensus 295 ~krvLLVLDdv~~~--------------~~l~~L~~~~~~~-~-----~GsrIIiTTrd-----~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 295 HRKVLIFIDDLDDQ--------------DVLDALAGQTQWF-G-----SGSRIIVITKD-----KHFLRAHGIDHIYEVC 349 (1153)
T ss_pred CCeEEEEEeCCCCH--------------HHHHHHHhhCccC-C-----CCcEEEEEeCc-----HHHHHhcCCCeEEEec
Confidence 46789999998642 1233333322221 1 12235557774 33443 568899999
Q ss_pred CCCHHHHHHHHHHHhcCcccCCc--cc-HHHHHHHccCCC
Q psy3540 92 LPNEWARYQLLTLCLEGVVIDVN--LD-FHKISKMLEGYT 128 (202)
Q Consensus 92 ~P~~~~R~~il~~~l~~~~~~~~--~~-~~~la~~t~g~s 128 (202)
.|+.++..++|..+..+....++ .+ ..++++++.|+-
T Consensus 350 ~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 350 LPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP 389 (1153)
T ss_pred CCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc
Confidence 99999999999887743322211 11 234667777765
No 275
>PF04465 DUF499: Protein of unknown function (DUF499); InterPro: IPR007555 This is a family of uncharacterised hypothetical prokaryotic proteins.
Probab=67.31 E-value=27 Score=34.15 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhCCCeEEEEcccccccc
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCS 29 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~ 29 (202)
.|+++|. ..||+|+|||+=.-+.
T Consensus 91 ~L~eLl~----~~P~LILiDEl~~Y~~ 113 (1035)
T PF04465_consen 91 VLRELLG----GRPVLILIDELVAYAR 113 (1035)
T ss_pred HHHHHhC----CCCEEEEeecHHHHHH
Confidence 4667774 3699999999877665
No 276
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=66.04 E-value=44 Score=30.23 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=55.4
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCCCCccHHHH---------
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPWDIDEAFR--------- 81 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~~~ld~al~--------- 81 (202)
...||||||+.+-.. +-..|+..++.-. +.....-.+-+|++||.. +...+.
T Consensus 323 gGTLfLdeI~~Lp~~------------~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~--L~~~v~~g~Fr~dL~ 388 (538)
T PRK15424 323 GGTLFLDEIGEMPLP------------LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCD--LEEDVRQGRFRRDLF 388 (538)
T ss_pred CCEEEEcChHhCCHH------------HHHHHHhhhhcCeEEecCCCceeccceEEEEecCCC--HHHHHhcccchHHHH
Confidence 458999999998431 2344555444311 110011235788888763 222222
Q ss_pred hcccceeeecCCCHHHH----HHHHHHHhcCc------ccCCcc-c-----HHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 82 RRFEKRVYIPLPNEWAR----YQLLTLCLEGV------VIDVNL-D-----FHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R----~~il~~~l~~~------~~~~~~-~-----~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
.|+. .+.+.+|...+| ..+.++++... ++.++. . +..|....=--+-.+|++++.+++..
T Consensus 389 yrL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 389 YRLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred HHhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 2331 345555655554 44566666432 112111 0 01222222123678899999988764
No 277
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=65.66 E-value=51 Score=26.26 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=35.2
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEK 86 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~ 86 (202)
..+.|-...|.||+-||= .. +=+..... .+-.++..+..- .+..||..|. |+.+..+.|+
T Consensus 152 AIARAL~~~P~iilADEP-----Tg--nLD~~t~~-~V~~ll~~~~~~-------~g~tii~VTH-----d~~lA~~~dr 211 (226)
T COG1136 152 AIARALINNPKIILADEP-----TG--NLDSKTAK-EVLELLRELNKE-------RGKTIIMVTH-----DPELAKYADR 211 (226)
T ss_pred HHHHHHhcCCCeEEeeCc-----cc--cCChHHHH-HHHHHHHHHHHh-------cCCEEEEEcC-----CHHHHHhCCE
Confidence 455666789999999982 21 11222222 333333333322 2234555666 4556667788
Q ss_pred eeeec
Q psy3540 87 RVYIP 91 (202)
Q Consensus 87 ~i~i~ 91 (202)
+|++.
T Consensus 212 ~i~l~ 216 (226)
T COG1136 212 VIELK 216 (226)
T ss_pred EEEEe
Confidence 77764
No 278
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=64.18 E-value=23 Score=25.28 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=50.8
Q ss_pred CCCccHHHHh-----cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 73 PWDIDEAFRR-----RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 73 ~~~ld~al~r-----rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
+..+||.+.+ .|+..+.=+..+..+|.-+--..+-.......+..+--+....|.|+.+|..++..+...+
T Consensus 28 ~~~~~p~~~~~~~~~~fgdv~~r~~Ld~k~R~Litla~laa~g~~~~l~~h~~~Al~~G~T~~ei~Evl~q~~~y~ 103 (123)
T TIGR02425 28 TTDFDQPFQELITEYAWGTVWTRPGLTKRERSLVTIALLAALGRDEELAMHVRATANTGVTEDDIKEVLLHVAIYA 103 (123)
T ss_pred ccccCHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 5667787776 5777777777888898888777775544333444555556668999999999888776543
No 279
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=64.06 E-value=43 Score=30.21 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=55.1
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCCC--CccH-----HHHhc
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHPW--DIDE-----AFRRR 83 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~~--~ld~-----al~rr 83 (202)
...|||||||.+-.. +-..|+..++.-. +.....-.+-+|++|+..- .+.. .+..|
T Consensus 308 gGTLfLdeI~~Lp~~------------~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~r 375 (526)
T TIGR02329 308 RGTLFLDEIGEMPLP------------LQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYR 375 (526)
T ss_pred CceEEecChHhCCHH------------HHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHh
Confidence 458999999998321 2344555444311 1100112356888887642 2222 22224
Q ss_pred ccceeeecCCCHHHH----HHHHHHHhcCcc------cCCcccHHH-------HHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 84 FEKRVYIPLPNEWAR----YQLLTLCLEGVV------IDVNLDFHK-------ISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 84 f~~~i~i~~P~~~~R----~~il~~~l~~~~------~~~~~~~~~-------la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
+. .+.+.+|...+| ..++.+++.... ++++ .+.. |....=--+-.+|++++.+++..+
T Consensus 376 L~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~-a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 376 LS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEA-AAQVLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred cC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHH-HHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 42 244455554444 445566664321 1111 1111 322222235688888888877643
No 280
>PRK10869 recombination and repair protein; Provisional
Probab=63.16 E-value=54 Score=29.76 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=30.8
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeec
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIP 91 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~ 91 (202)
..|.+++|||+|+-...+ ....+..++..+ ... .-||..|..|. +.+..|.++.+.
T Consensus 451 ~~~~~li~DEpd~gld~~--------~~~~v~~~l~~l---~~~------~qvi~iTH~~~-----~~~~ad~~~~v~ 506 (553)
T PRK10869 451 METPALIFDEVDVGISGP--------TAAVVGKLLRQL---GES------TQVMCVTHLPQ-----VAGCGHQHFFVS 506 (553)
T ss_pred CCCCEEEEECCCCCCCHH--------HHHHHHHHHHHH---hcC------CEEEEEecCHH-----HHHhCCEEEEEe
Confidence 357899999999855422 122233344443 221 23566777654 334556666664
No 281
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=63.11 E-value=8.8 Score=31.67 Aligned_cols=58 Identities=16% Similarity=0.077 Sum_probs=34.4
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
.+..|-...|.++|+||=-+ +-... ....+...+..+... .+..|+.+|..++.+..-
T Consensus 146 ~ia~aL~~~P~lliLDEPt~--------GLDp~---~~~~~~~~l~~l~~~----g~~tvlissH~l~e~~~~ 203 (293)
T COG1131 146 SIALALLHDPELLILDEPTS--------GLDPE---SRREIWELLRELAKE----GGVTILLSTHILEEAEEL 203 (293)
T ss_pred HHHHHHhcCCCEEEECCCCc--------CCCHH---HHHHHHHHHHHHHhC----CCcEEEEeCCcHHHHHHh
Confidence 35566678999999999321 11112 233444444444443 335788888887776654
No 282
>COG1485 Predicted ATPase [General function prediction only]
Probab=62.09 E-value=12 Score=31.78 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=26.0
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC-CCCcc
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH-PWDID 77 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~-~~~ld 77 (202)
--||.|||+..= .-++. -+++.|+..|=. .+|++|+|+|. |+.|=
T Consensus 131 ~~vLCfDEF~Vt-----DI~DA----MiL~rL~~~Lf~--------~GV~lvaTSN~~P~~LY 176 (367)
T COG1485 131 TRVLCFDEFEVT-----DIADA----MILGRLLEALFA--------RGVVLVATSNTAPDNLY 176 (367)
T ss_pred CCEEEeeeeeec-----ChHHH----HHHHHHHHHHHH--------CCcEEEEeCCCChHHhc
Confidence 359999998651 11112 234444443322 56899999997 44443
No 283
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=61.92 E-value=22 Score=33.05 Aligned_cols=84 Identities=23% Similarity=0.149 Sum_probs=61.4
Q ss_pred cHHHHh---cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy3540 77 DEAFRR---RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTP 153 (202)
Q Consensus 77 d~al~r---rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~ 153 (202)
|+.++| .+.+.--.|..+.+.+..|-..|..--.-... .. ...+-.-|.++|+++++-|-..|-.+...
T Consensus 507 ~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~---~~-~~~~~piT~RqLEsiiRLaeA~Ak~rLS~---- 578 (682)
T COG1241 507 DFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSAL---VE-EKRTIPITARQLESIIRLAEAHAKMRLSD---- 578 (682)
T ss_pred cHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhcccc---cc-ccCcccccHHHHHHHHHHHHHHHhhhccC----
Confidence 667776 45555444888999999999999853322211 33 55666789999999999998777666432
Q ss_pred hHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 154 AQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 154 ~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
.|+.+|..+|++-++
T Consensus 579 -------------~V~~eD~~eAi~lv~ 593 (682)
T COG1241 579 -------------VVEEEDVDEAIRLVD 593 (682)
T ss_pred -------------CCCHHHHHHHHHHHH
Confidence 688999999988876
No 284
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=61.73 E-value=15 Score=28.62 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=35.0
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEec
Q psy3540 5 QRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAAT 70 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatT 70 (202)
|.....|-..+|.+++|||=-+- -...++.+.|.-|..+... .+-+|+.|-
T Consensus 160 R~aIARaLameP~vmLFDEPTSA-----------LDPElVgEVLkv~~~LAeE----grTMv~VTH 210 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSA-----------LDPELVGEVLKVMQDLAEE----GRTMVVVTH 210 (256)
T ss_pred HHHHHHHHhcCCceEeecCCccc-----------CCHHHHHHHHHHHHHHHHh----CCeEEEEee
Confidence 44566677789999999984221 1235788888888888775 555666553
No 285
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=61.52 E-value=13 Score=28.87 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=31.7
Q ss_pred hCCCeEEEEccccccccccCCCC-cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEec
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDS-EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAAT 70 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatT 70 (202)
...+.+|+||-+-.++....... ......+.+..++..|..+... .++.||.++
T Consensus 112 ~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~----~~~~vi~tn 166 (226)
T cd01393 112 SGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADK----FNVAVVFTN 166 (226)
T ss_pred cCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHH----hCcEEEEEE
Confidence 56889999999999876431111 1122234556666666666543 445555554
No 286
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=61.22 E-value=16 Score=23.18 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHH
Q psy3540 130 SDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA 178 (202)
Q Consensus 130 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~ 178 (202)
--|+.++++|...+...... .+|.+|+..||+
T Consensus 35 yrlreiiq~a~kfm~hskR~-----------------~Lt~~Di~~ALr 66 (66)
T PF02969_consen 35 YRLREIIQEALKFMRHSKRT-----------------KLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHTT-S-----------------SB-HHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhCCC-----------------CCCHHHHHHHhC
Confidence 34667777777666553332 799999999985
No 287
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=60.46 E-value=9.4 Score=28.33 Aligned_cols=21 Identities=10% Similarity=0.078 Sum_probs=15.7
Q ss_pred HHHHHhhhCCCeEEEEccccc
Q psy3540 6 RTNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD~ 26 (202)
-.+..|-...|.|+++||--+
T Consensus 91 l~laral~~~p~illlDEP~~ 111 (163)
T cd03216 91 VEIARALARNARLLILDEPTA 111 (163)
T ss_pred HHHHHHHhcCCCEEEEECCCc
Confidence 345666678999999999643
No 288
>PF13173 AAA_14: AAA domain
Probab=59.27 E-value=15 Score=25.95 Aligned_cols=13 Identities=46% Similarity=0.639 Sum_probs=11.4
Q ss_pred CCeEEEEcccccc
Q psy3540 15 RVSTIFIDEVDSL 27 (202)
Q Consensus 15 ~P~Ii~iDeiD~l 27 (202)
.+.+|||||+..+
T Consensus 61 ~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 61 GKKYIFIDEIQYL 73 (128)
T ss_pred CCcEEEEehhhhh
Confidence 6789999999876
No 289
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=59.24 E-value=17 Score=27.50 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 137 ~laral~~~p~llllDEPt 155 (190)
T TIGR01166 137 AIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred HHHHHHhcCCCEEEEcCCc
Confidence 4555666789999999953
No 290
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=59.10 E-value=4.1 Score=27.66 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=18.3
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy3540 117 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWM 196 (202)
Q Consensus 117 ~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~ 196 (202)
+.+-+...+.+.-..|..+|..|...|..+... .|+.+||.-++++-++.+.. +..|..|+
T Consensus 21 ~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~-----------------~i~~eDl~F~lR~D~~Kl~R--l~~~L~~k 81 (93)
T PF02269_consen 21 LPETVDLVEDIVREYIIELCQEAMEVAQRRGSK-----------------KIKVEDLLFLLRKDPKKLAR--LRELLSMK 81 (93)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHC-------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-----------------cCcHHHHHHHHhcCHHHHHH--HHHHHHHH
Confidence 445555666677788899999998888777432 68899999999987766543 66677776
Q ss_pred HHh
Q psy3540 197 NEF 199 (202)
Q Consensus 197 ~~~ 199 (202)
+..
T Consensus 82 ~~~ 84 (93)
T PF02269_consen 82 DEI 84 (93)
T ss_dssp ---
T ss_pred HHH
Confidence 643
No 291
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=57.87 E-value=51 Score=30.94 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=39.1
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc-----HHHHhcccce
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID-----EAFRRRFEKR 87 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld-----~al~rrf~~~ 87 (202)
...|.+++|||+..++... .....+..++..+... +..++.+|..+..+. .+++.-.+.+
T Consensus 627 ~~~~~~i~iDEa~~ll~~~-------~~~~~i~~~~r~~RK~--------~~~~~~~TQ~~~d~~~~~~~~~il~n~~~k 691 (785)
T TIGR00929 627 DGRPFLIIIDEAWQYLGNP-------VFAAKIRDWLKTLRKA--------NGIVVLATQSINDALGSRIADSILEQCATK 691 (785)
T ss_pred CCCCeEEEEechhhhcCCH-------HHHHHHHHHHHHHHHc--------CCEEEEEeCCHHHHhcCchHHHHHHhCCEE
Confidence 3479999999999887532 1234455555555443 345667888776543 2334444555
Q ss_pred eeecCC
Q psy3540 88 VYIPLP 93 (202)
Q Consensus 88 i~i~~P 93 (202)
|.++.|
T Consensus 692 i~l~~~ 697 (785)
T TIGR00929 692 IFLPNP 697 (785)
T ss_pred EEcCCC
Confidence 555443
No 292
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=57.72 E-value=36 Score=25.31 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=19.2
Q ss_pred HHHHHHhhhCCCeEEEEcccccccc
Q psy3540 5 QRTNVPSNSYRVSTIFIDEVDSLCS 29 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iDeiD~l~~ 29 (202)
..+...+....|.+++||++-.+..
T Consensus 85 ~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 85 QRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 4455555677899999999988765
No 293
>PHA00350 putative assembly protein
Probab=57.31 E-value=10 Score=32.92 Aligned_cols=68 Identities=16% Similarity=0.016 Sum_probs=40.3
Q ss_pred CCeEEEEccccccccccCCCCcch-------HH----HHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHE-------AS----RRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRR 83 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~-------~~----~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rr 83 (202)
.-++|+|||+-.+++.+..-.... .. ......++..+..-.. .+.=++.+|.++..||..++.+
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH-----~G~DIiliTQ~~~~Id~~iR~l 155 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRH-----YNWDIILLTPNIRKIHSDIRAM 155 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcc-----cCceEEEEeCCHHHhhHHHHHh
Confidence 347999999999999874311000 00 0001223333332222 3345778899999999999986
Q ss_pred ccce
Q psy3540 84 FEKR 87 (202)
Q Consensus 84 f~~~ 87 (202)
.+..
T Consensus 156 vE~~ 159 (399)
T PHA00350 156 IEMT 159 (399)
T ss_pred hhhe
Confidence 6553
No 294
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=57.07 E-value=49 Score=25.82 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=30.1
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHH
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAF 80 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al 80 (202)
..|++++|||+-.-. +......+...++..+-.... .+..+|.+|..++.+....
T Consensus 107 ~~~slvllDE~~~gt-------d~~~~~~~~~ail~~l~~~~~-----~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 107 TRRSLVLIDEFGKGT-------DTEDGAGLLIATIEHLLKRGP-----ECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCcEEEeccccCCC-------CHHHHHHHHHHHHHHHHhcCC-----CCcEEEEEcChHHHHHhhh
Confidence 579999999974421 111112333444544432111 2246777888877766654
No 295
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=57.06 E-value=11 Score=25.60 Aligned_cols=62 Identities=23% Similarity=0.217 Sum_probs=43.3
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy3540 117 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWM 196 (202)
Q Consensus 117 ~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~ 196 (202)
+.+-+...+...-..|..+|.+|...|.++.. .++.+||.-++++-+..++ -+..|-.|+
T Consensus 22 ~~eTv~llE~iv~~~i~~l~~~a~~~A~~r~~------------------k~~~eD~~FliR~D~~Kl~--Rl~~lL~~k 81 (92)
T cd07978 22 LPETVDLLEDIVVEYIIELCHKAAEVAQRRRG------------------KVKVEDLIFLLRKDPKKLA--RLRELLSMK 81 (92)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------------CCCHHHHHHHHhcCHHHHH--HHHHHHHHH
Confidence 34455555667777888999999888862211 5699999999977655433 466777777
Q ss_pred HH
Q psy3540 197 NE 198 (202)
Q Consensus 197 ~~ 198 (202)
++
T Consensus 82 ~~ 83 (92)
T cd07978 82 DE 83 (92)
T ss_pred HH
Confidence 65
No 296
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.76 E-value=28 Score=27.70 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=44.5
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRR 83 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rr 83 (202)
+..+...-+.+.-.||+||-+..++... +..-+..+++.+..+... .+++ ..|-+|..++++++-|
T Consensus 112 L~~l~~~~k~~~~dViIIDSls~~~~~~--------~~~~vl~fm~~~r~l~d~----gKvI--ilTvhp~~l~e~~~~r 177 (235)
T COG2874 112 LDLLLEFIKRWEKDVIIIDSLSAFATYD--------SEDAVLNFMTFLRKLSDL----GKVI--ILTVHPSALDEDVLTR 177 (235)
T ss_pred HHHHHhhHHhhcCCEEEEecccHHhhcc--------cHHHHHHHHHHHHHHHhC----CCEE--EEEeChhhcCHHHHHH
Confidence 4555555567778899999999887643 122356666667777654 3333 3466789999988764
Q ss_pred c
Q psy3540 84 F 84 (202)
Q Consensus 84 f 84 (202)
+
T Consensus 178 i 178 (235)
T COG2874 178 I 178 (235)
T ss_pred H
Confidence 4
No 297
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=56.05 E-value=18 Score=27.68 Aligned_cols=56 Identities=11% Similarity=-0.019 Sum_probs=30.6
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.+..|-...|.++++||--+=+ .......+..++..+. . .+..+|.+|..+..++.
T Consensus 137 ~laral~~~p~~lilDEP~~~L--------D~~~~~~l~~~l~~~~---~-----~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 137 ALLRLWMSKAKLWLLDEPLVAL--------DELSLLTIITKIQEHR---A-----KGGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccc--------CHHHHHHHHHHHHHHH---H-----cCCEEEEEeCCchhccc
Confidence 3455566789999999954322 1222233334443332 1 11356667887776654
No 298
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=55.90 E-value=42 Score=27.53 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.1
Q ss_pred CCCeEEEEcccccccccc
Q psy3540 14 YRVSTIFIDEVDSLCSMR 31 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r 31 (202)
.+|.||+|||-|..+...
T Consensus 142 ~~kvvlLIDEYD~p~~~~ 159 (284)
T PF09820_consen 142 GKKVVLLIDEYDKPINDA 159 (284)
T ss_pred CCceEEEecCccHHHHHH
Confidence 468999999999987654
No 299
>PRK09183 transposase/IS protein; Provisional
Probab=55.82 E-value=17 Score=29.43 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=14.8
Q ss_pred HHHHHhhhCCCeEEEEccccccc
Q psy3540 6 RTNVPSNSYRVSTIFIDEVDSLC 28 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD~l~ 28 (202)
.+|... ...|.+++|||++.+.
T Consensus 156 ~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 156 TTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred HHHHHH-hcCCCEEEEcccccCC
Confidence 344433 3467899999997753
No 300
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=55.78 E-value=26 Score=27.20 Aligned_cols=59 Identities=14% Similarity=-0.050 Sum_probs=31.3
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
+.+..++..| ..|+++++||+-.=. +......+...++..+... + ..+|.+|...+.++
T Consensus 97 ~~~~~il~~~--~~~~lvllDE~~~gt-------~~~~~~~l~~~il~~l~~~-~-------~~~i~~TH~~~l~~ 155 (204)
T cd03282 97 SETAYILDYA--DGDSLVLIDELGRGT-------SSADGFAISLAILECLIKK-E-------STVFFATHFRDIAA 155 (204)
T ss_pred HHHHHHHHhc--CCCcEEEeccccCCC-------CHHHHHHHHHHHHHHHHhc-C-------CEEEEECChHHHHH
Confidence 3444454443 579999999974311 1111122334455544433 1 25667888766554
No 301
>PRK11823 DNA repair protein RadA; Provisional
Probab=55.38 E-value=50 Score=29.04 Aligned_cols=51 Identities=14% Similarity=0.142 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCC--CCcchHHHHHHHHHHHHHhC
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDG 53 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~--~~~~~~~~~~~~~ll~~ld~ 53 (202)
++.++++..+...|.+|+||.+-.+....-. .+.....+.+...|......
T Consensus 144 ~l~~i~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~ 196 (446)
T PRK11823 144 NLEAILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQ 196 (446)
T ss_pred CHHHHHHHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 3566777778889999999999998754311 12222333444555554443
No 302
>PRK09694 helicase Cas3; Provisional
Probab=55.16 E-value=23 Score=33.98 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=32.1
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR 82 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r 82 (202)
..+-+||+|||++++=. ....++..+|..+...... +|+.|..-|..+-..+++
T Consensus 437 ~La~svvIiDEVHAyD~---------ym~~lL~~~L~~l~~~g~~-------vIllSATLP~~~r~~L~~ 490 (878)
T PRK09694 437 GLGRSVLIVDEVHAYDA---------YMYGLLEAVLKAQAQAGGS-------VILLSATLPATLKQKLLD 490 (878)
T ss_pred hhccCeEEEechhhCCH---------HHHHHHHHHHHHHHhcCCc-------EEEEeCCCCHHHHHHHHH
Confidence 35678999999999721 2345667777766554332 455555555544444443
No 303
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=55.12 E-value=20 Score=27.41 Aligned_cols=20 Identities=10% Similarity=-0.100 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 135 ~laral~~~p~llllDEPt~ 154 (201)
T cd03231 135 ALARLLLSGRPLWILDEPTT 154 (201)
T ss_pred HHHHHHhcCCCEEEEeCCCC
Confidence 45555667899999999543
No 304
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=54.58 E-value=43 Score=26.18 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=9.9
Q ss_pred CCCeEEEEccc
Q psy3540 14 YRVSTIFIDEV 24 (202)
Q Consensus 14 ~~P~Ii~iDei 24 (202)
..|+++++||.
T Consensus 108 ~~~~llllDEp 118 (216)
T cd03284 108 TERSLVLLDEI 118 (216)
T ss_pred CCCeEEEEecC
Confidence 58999999997
No 305
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.49 E-value=12 Score=28.94 Aligned_cols=20 Identities=10% Similarity=-0.012 Sum_probs=14.5
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 138 ~ia~al~~~p~llllDEP~~ 157 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFA 157 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 34455567899999999644
No 306
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=54.19 E-value=45 Score=26.71 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=17.1
Q ss_pred HHhhhCCCeEEEEccccccccc
Q psy3540 9 VPSNSYRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 9 ~~A~~~~P~Ii~iDeiD~l~~~ 30 (202)
..++.+.|.+|+||.+-.+...
T Consensus 134 ~~~~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 134 YMAVSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHhcCCceEEEECCHHHHhcc
Confidence 3445678999999999998654
No 307
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=54.18 E-value=11 Score=35.96 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=53.3
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCC-ccHHHHhcccceeeecC
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWD-IDEAFRRRFEKRVYIPL 92 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~-ld~al~rrf~~~i~i~~ 92 (202)
...-+|+|||++.|...-+. + +...+..|-..... .+|-+|.||.+|+. +-+.++.-|...|.+.+
T Consensus 638 lP~iviiiDe~adlm~~~~k----~-----ve~~i~rLa~~ara----~GIHlilatqRps~dVit~ikanipsrIaf~v 704 (858)
T COG1674 638 LPYIVIIIDEYADLMMVAGK----E-----LEELIARLAQKGRA----AGIHLILATQRPSVDVITGIKANIPTRIALRL 704 (858)
T ss_pred CCeEEEEEcchHHHhhhhhH----H-----HHHHHHHHHHhhhh----cceEEEEecCCCCcchhHHHHhCCcceEEEEE
Confidence 34467889999999653211 1 22333333332222 56889999999998 77776669999999999
Q ss_pred CCHHHHHHHHH
Q psy3540 93 PNEWARYQLLT 103 (202)
Q Consensus 93 P~~~~R~~il~ 103 (202)
-+..+...|+-
T Consensus 705 ~s~~dsr~il~ 715 (858)
T COG1674 705 SSKIDSRLILG 715 (858)
T ss_pred cCccceeeecc
Confidence 98888877776
No 308
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=53.92 E-value=13 Score=28.68 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=14.1
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 150 ~la~al~~~p~lllLDEP~ 168 (218)
T cd03255 150 AIARALANDPKIILADEPT 168 (218)
T ss_pred HHHHHHccCCCEEEEcCCc
Confidence 3455556789999999953
No 309
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=53.38 E-value=42 Score=30.14 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=53.2
Q ss_pred ceEEEEEecCC---CCCccHHHHhcccceeeecC--C-CHHHHH---HHHHHHhcCcccCCccc---HHHHHHHc---c-
Q psy3540 62 KIIMILAATNH---PWDIDEAFRRRFEKRVYIPL--P-NEWARY---QLLTLCLEGVVIDVNLD---FHKISKML---E- 125 (202)
Q Consensus 62 ~~v~viatTn~---~~~ld~al~rrf~~~i~i~~--P-~~~~R~---~il~~~l~~~~~~~~~~---~~~la~~t---~- 125 (202)
-+|++||.-.. ....||.+.+.|....+|.. | +.+... .++..++.+..+. .++ +..|.+.. +
T Consensus 387 vKVILiG~~~~y~~L~~~D~dF~~lFkv~aef~~~~~~~~e~~~~~~~~i~~~~~~~~L~-~~~~~Av~~li~~~~R~~q 465 (509)
T PF13654_consen 387 VKVILIGDRELYYLLYEYDPDFYKLFKVKAEFDSEMPRTEENIRQYARFIASICQKEGLP-PFDRSAVARLIEYSARLDQ 465 (509)
T ss_dssp -EEEEEE-TTHHHHS-HHHHHHHHHHSEEEE--SEEE--HHHHHHHHHHHHHHHHHHSS---BBHHHHHHHHHHHHHCC-
T ss_pred EEEEEEcCHHHHHHHHHhCHHHHhCCCEEEEccccCCCCHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHhC
Confidence 45888888776 67788998885544443322 3 223332 3333344333222 122 22222222 1
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHh
Q psy3540 126 ---GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 126 ---g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 180 (202)
-....+|..++.+|...|-..... .|+.+|+.+|++.-
T Consensus 466 ~kLsl~~~~l~~ll~EA~~~A~~~~~~-----------------~I~~~~V~~Ai~~r 506 (509)
T PF13654_consen 466 DKLSLRFSWLADLLREANYWARKEGAK-----------------VITAEHVEQAIEER 506 (509)
T ss_dssp SEEE--HHHHHHHHHHHHHHHHHCT-S-----------------SB-HHHHHHHHHH-
T ss_pred CEeCCCHHHHHHHHHHHHHHHHHhCCC-----------------ccCHHHHHHHHHcc
Confidence 245678999999998887654322 79999999999863
No 310
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=52.93 E-value=46 Score=21.20 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHH
Q psy3540 97 ARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREA 176 (202)
Q Consensus 97 ~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~A 176 (202)
.-.++++..-++..+++++ ...|.+.++.| +..++..|...|..+... .|..+|+.-+
T Consensus 6 ~l~~lv~~id~~~~~~~da-~~~l~~~~e~f----v~~v~~~a~~lAkHr~~~-----------------tv~~~Di~l~ 63 (72)
T cd07981 6 KLQELLKEIDPREQLDPDV-EELLLEIADDF----VDDVVEDACRLAKHRKSD-----------------TLEVKDVQLH 63 (72)
T ss_pred HHHHHHHhhCCCCCcCHHH-HHHHHHHHHHH----HHHHHHHHHHHHHHcCCC-----------------CCCHHHHHHH
Confidence 3344555544444444332 44566666655 457777777777776543 6888999888
Q ss_pred HHHh
Q psy3540 177 IARC 180 (202)
Q Consensus 177 l~~~ 180 (202)
++..
T Consensus 64 l~r~ 67 (72)
T cd07981 64 LERN 67 (72)
T ss_pred HHHh
Confidence 8763
No 311
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=52.85 E-value=40 Score=25.48 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=10.6
Q ss_pred CCCeEEEEccccc
Q psy3540 14 YRVSTIFIDEVDS 26 (202)
Q Consensus 14 ~~P~Ii~iDeiD~ 26 (202)
..|+++++||.-.
T Consensus 77 ~~~~llllDEp~~ 89 (185)
T smart00534 77 TENSLVLLDELGR 89 (185)
T ss_pred CCCeEEEEecCCC
Confidence 3799999999744
No 312
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=52.81 E-value=13 Score=29.54 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=30.2
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
.+..|-..+|.|+++||--+=+ .......+..++..+.. . .+..||.+|+.++.+.
T Consensus 163 ~la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~L~~~~~---~----~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPAAGL--------NPKETKELDELIAELRN---E----HNVTVLLIEHDMKLVM 218 (255)
T ss_pred HHHHHHhcCCCEEEEcCCccCC--------CHHHHHHHHHHHHHHHh---h----cCCEEEEEeCCHHHHH
Confidence 3455556789999999954322 12223333444443322 1 1246777888765443
No 313
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=52.59 E-value=18 Score=28.42 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=15.3
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 142 ~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTV 161 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 45666677999999999543
No 314
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=52.56 E-value=35 Score=32.36 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=40.1
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc-----HHHHhcccce
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID-----EAFRRRFEKR 87 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld-----~al~rrf~~~ 87 (202)
...|.++++||.-..+... .....+..++..+.. .+..++.+|..++.+. .+++.-...+
T Consensus 640 ~g~p~il~iDE~w~~L~~~-------~~~~~i~~~lk~~RK--------~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~ 704 (800)
T PRK13898 640 DGTPSMIVLDEAWALIDNP-------VFAPKIKDWLKVLRK--------LNTFVIFATQSVEDASKSAISDTLVQQTATQ 704 (800)
T ss_pred cCCCcEEEEeCChhhCCCH-------HHHHHHHHHHHHHHH--------cCCEEEEEeCCHHHHHhChhHHHHHHhCCeE
Confidence 4579999999998876421 112233344443322 2235777888776644 3444466667
Q ss_pred eeecCCCH
Q psy3540 88 VYIPLPNE 95 (202)
Q Consensus 88 i~i~~P~~ 95 (202)
|.+|-|+.
T Consensus 705 I~lpn~~a 712 (800)
T PRK13898 705 IFLPNLKA 712 (800)
T ss_pred EEcCChhh
Confidence 77776653
No 315
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=52.33 E-value=14 Score=29.05 Aligned_cols=20 Identities=10% Similarity=0.018 Sum_probs=14.8
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 155 ~la~al~~~p~lllLDEPt~ 174 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTG 174 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCC
Confidence 35556667899999999543
No 316
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=51.94 E-value=65 Score=28.29 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhCCCeEEEEcccccccccc
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMR 31 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r 31 (202)
++..+.+.....+|.+++||-|-.+....
T Consensus 156 ~~e~I~~~l~~~~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 156 NLEDIIAELEQEKPDLVVIDSIQTLYSEE 184 (456)
T ss_pred CHHHHHHHHHhcCCCEEEEeccceeeccc
Confidence 57889999999999999999999998765
No 317
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=51.86 E-value=22 Score=27.24 Aligned_cols=56 Identities=14% Similarity=0.016 Sum_probs=30.0
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.+..|-...|.|+++||-.+=+ .......+..++..+.. . +..+|.+|.+++.++.
T Consensus 139 ~la~al~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~---~-----~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 139 ALARLWLTRAPLWILDEPFTAI--------DKQGVARLEALLAQHAE---Q-----GGMVILTTHQDLPVAS 194 (204)
T ss_pred HHHHHHhcCCCEEEEeCCCccC--------CHHHHHHHHHHHHHHHH---C-----CCEEEEEecChhhhcc
Confidence 3455556789999999964322 11222233344443321 1 1246667887766654
No 318
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=51.80 E-value=53 Score=30.98 Aligned_cols=68 Identities=15% Similarity=-0.016 Sum_probs=42.2
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH-----HHHhcccce
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE-----AFRRRFEKR 87 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~-----al~rrf~~~ 87 (202)
...|.+++|||+..++... .......+..+....-. .+..++.+|..+.++.. +++.-.+.+
T Consensus 635 ~~~~~~~viDEaw~ll~~~-----~~~~~~~i~~~~r~~RK--------~g~~~~~~TQ~~~D~~~~~~~~~il~n~~~~ 701 (797)
T TIGR02746 635 RKRRKICIIDEAWSLLDGA-----NPQAADFIETGYRRARK--------YGGAFITITQGIEDFYSSPEARAAYANSDWK 701 (797)
T ss_pred CCCceEEEEecHHHHhhcc-----cHHHHHHHHHHHHHHhh--------cCceEEEEEecHHHhccCHHHHHHHhcccce
Confidence 3569999999999998611 12223344444444333 44567788888888743 444455666
Q ss_pred eeecCC
Q psy3540 88 VYIPLP 93 (202)
Q Consensus 88 i~i~~P 93 (202)
+.++.+
T Consensus 702 i~L~~~ 707 (797)
T TIGR02746 702 IILRQS 707 (797)
T ss_pred eeecCC
Confidence 666655
No 319
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=51.39 E-value=18 Score=28.58 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=14.8
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 163 ~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 163 EIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHhcCCCEEEEcCCCC
Confidence 45556667899999999533
No 320
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=51.34 E-value=85 Score=22.95 Aligned_cols=92 Identities=9% Similarity=0.062 Sum_probs=42.0
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH--HHHh---cccceeeec
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE--AFRR---RFEKRVYIP 91 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~--al~r---rf~~~i~i~ 91 (202)
.||++.+...| .. . ........|...+..... +.++|+.+. +.+|. .+.. .-..++.++
T Consensus 59 klvii~~~~~l--~~-~-----~~~~~~~~l~~~l~~~~~-----~~~lii~~~---~~~~~~~k~~k~l~~~~~~~~~~ 122 (172)
T PF06144_consen 59 KLVIIKNAPFL--KD-K-----LKKKEIKALIEYLSNPPP-----DCILIIFSE---EKLDKRKKLYKALKKQAIVIECK 122 (172)
T ss_dssp EEEEEE-------TT-------S-TTHHHHHHHHTTT--S-----SEEEEEEES----S--HHHHHHHHHTTTEEEEEE-
T ss_pred eEEEEecCccc--cc-c-----ccHHHHHHHHHHHhCCCC-----CEEEEEEeC---CchhhhhhHHHHHhcccceEEec
Confidence 46777776555 11 0 011235566666655554 334444443 33442 2333 344678889
Q ss_pred CCCHHHHHHHHHHHhcCcccCC-cccHHHHHHHc
Q psy3540 92 LPNEWARYQLLTLCLEGVVIDV-NLDFHKISKML 124 (202)
Q Consensus 92 ~P~~~~R~~il~~~l~~~~~~~-~~~~~~la~~t 124 (202)
.|+..+....++..++..+..- .-.+..|+..+
T Consensus 123 ~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~ 156 (172)
T PF06144_consen 123 KPKEQELPRWIKERAKKNGLKIDPDAAQYLIERV 156 (172)
T ss_dssp ---TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 9999999999999997665431 22345555554
No 321
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=51.17 E-value=1.3e+02 Score=24.24 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=18.8
Q ss_pred HHHHHHHhhhCCCeEEEEcccccccc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCS 29 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~ 29 (202)
|++....+...++.+|+||+++.|..
T Consensus 124 I~~~l~~~~~~~~~~liIDdls~Ll~ 149 (249)
T PF09807_consen 124 IQEALSPADSNGSVVLIIDDLSVLLS 149 (249)
T ss_pred HHHHHhhccCCCCeEEEEeCHHHHHH
Confidence 44444444455788999999999987
No 322
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=50.27 E-value=80 Score=21.57 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=12.3
Q ss_pred cHHHHHHHccCCCHHHHHHHH
Q psy3540 116 DFHKISKMLEGYTGSDIANLA 136 (202)
Q Consensus 116 ~~~~la~~t~g~s~~dl~~l~ 136 (202)
+|.++|... |+|-.+|..+-
T Consensus 22 ~wK~faR~l-glse~~Id~I~ 41 (97)
T cd08316 22 DVKKFVRKS-GLSEPKIDEIK 41 (97)
T ss_pred HHHHHHHHc-CCCHHHHHHHH
Confidence 456666554 57777766654
No 323
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=50.13 E-value=29 Score=28.21 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=35.2
Q ss_pred HHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhccc
Q psy3540 6 RTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFE 85 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~ 85 (202)
-.++.|-...|-++++||= -. +-.......+-.||..+..- +..|+..|..+..+-. -||
T Consensus 148 V~lARAL~~~p~lllLDEP-----~~---gvD~~~~~~i~~lL~~l~~e--------g~tIl~vtHDL~~v~~----~~D 207 (254)
T COG1121 148 VLLARALAQNPDLLLLDEP-----FT---GVDVAGQKEIYDLLKELRQE--------GKTVLMVTHDLGLVMA----YFD 207 (254)
T ss_pred HHHHHHhccCCCEEEecCC-----cc---cCCHHHHHHHHHHHHHHHHC--------CCEEEEEeCCcHHhHh----hCC
Confidence 3567777889999999983 11 11122233344445444432 3456667776554433 455
Q ss_pred ceeee
Q psy3540 86 KRVYI 90 (202)
Q Consensus 86 ~~i~i 90 (202)
+++.+
T Consensus 208 ~vi~L 212 (254)
T COG1121 208 RVICL 212 (254)
T ss_pred EEEEE
Confidence 44443
No 324
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=49.74 E-value=17 Score=28.63 Aligned_cols=19 Identities=16% Similarity=-0.001 Sum_probs=13.9
Q ss_pred HHHhhhCCCeEEEEccccc
Q psy3540 8 NVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~ 26 (202)
+..|-...|.|+++||--+
T Consensus 155 la~al~~~p~llllDEPt~ 173 (241)
T cd03256 155 IARALMQQPKLILADEPVA 173 (241)
T ss_pred HHHHHhcCCCEEEEeCccc
Confidence 4455567899999999543
No 325
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=49.18 E-value=1.3e+02 Score=23.84 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR 82 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r 82 (202)
++.+.-..-+.++|.+|++|.. .+.. ++ -+||..+..-.-. -.|+||-|.|..+.|-.+++-
T Consensus 34 ~~~ea~~~i~~~~pDLILLDiY---mPd~-----~G------i~lL~~ir~~~~~----~DVI~iTAA~d~~tI~~alr~ 95 (224)
T COG4565 34 TLEEAKMIIEEFKPDLILLDIY---MPDG-----NG------IELLPELRSQHYP----VDVIVITAASDMETIKEALRY 95 (224)
T ss_pred cHHHHHHHHHhhCCCEEEEeec---cCCC-----cc------HHHHHHHHhcCCC----CCEEEEeccchHHHHHHHHhc
Confidence 3455556667889999999864 4422 11 2455555443332 569999999999999999887
Q ss_pred -ccccee
Q psy3540 83 -RFEKRV 88 (202)
Q Consensus 83 -rf~~~i 88 (202)
-||.-|
T Consensus 96 Gv~DYLi 102 (224)
T COG4565 96 GVVDYLI 102 (224)
T ss_pred Cchhhee
Confidence 676544
No 326
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=49.10 E-value=18 Score=27.97 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=14.2
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 151 ~laral~~~p~illlDEPt 169 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPT 169 (221)
T ss_pred HHHHHHhCCCCEEEEeCCC
Confidence 4455556789999999953
No 327
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=49.07 E-value=67 Score=26.07 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=38.0
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh
Q psy3540 5 QRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR 82 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r 82 (202)
+-+|..|--..|-++++||-=.- -+.. -...|++.++.+... . ..--+|.-|.+++.+++.+-+
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~G-------LDl~----~re~ll~~l~~~~~~--~-~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQG-------LDLI----AREQLLNRLEELAAS--P-GAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHHhcCCCEEEecCcccc-------CChH----HHHHHHHHHHHHhcC--C-CCceEEEEEcchhhcccccce
Confidence 34677888889999999994211 1111 123445555544443 1 122455668899999986554
No 328
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.95 E-value=32 Score=25.56 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=13.6
Q ss_pred HHHhhhCCCeEEEEcccc
Q psy3540 8 NVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD 25 (202)
+..|-...|.++++||--
T Consensus 107 la~al~~~p~llllDEP~ 124 (171)
T cd03228 107 IARALLRDPPILILDEAT 124 (171)
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 455556789999999953
No 329
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.91 E-value=16 Score=28.18 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=13.8
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 140 ~la~al~~~p~~lllDEPt 158 (213)
T cd03259 140 ALARALAREPSLLLLDEPL 158 (213)
T ss_pred HHHHHHhcCCCEEEEcCCc
Confidence 3445556789999999953
No 330
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=48.36 E-value=91 Score=23.59 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=30.6
Q ss_pred HHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 8 NVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
+..|-...|.++++||-.+=+. ......+..++..+.. .+..+|.+|++++.+..+
T Consensus 134 la~al~~~p~~lllDEP~~~LD--------~~~~~~l~~~l~~~~~--------~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 134 IARLIACQSDLWLLDEVETNLS--------KENRDLLNNLIVMKAN--------SGGIVLLSSHLESSIKSA 189 (195)
T ss_pred HHHHHhcCCCEEEEeCCcccCC--------HHHHHHHHHHHHHHHh--------CCCEEEEEeCCccccchh
Confidence 4455566899999999644221 1122333334432221 123567788887776653
No 331
>COG1106 Predicted ATPases [General function prediction only]
Probab=48.31 E-value=17 Score=31.14 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=35.2
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHH-HHhCCCCCCCCCceEEEEEecCCCCCccHHHHhc
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLI-QMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRR 83 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~-~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rr 83 (202)
-+++|||+|...-.. ..-.+++ ..++... ..+.+++||....-+|-.+.+|
T Consensus 272 k~l~iDEie~~lHp~-----------lm~~~l~~~~~~~~~-----~niq~~~TTH~~e~id~~l~~~ 323 (371)
T COG1106 272 KVLLIDEIENGLHPS-----------LMILILETLEDKVKN-----NNIQVFLTTHSTEFIDLLLERR 323 (371)
T ss_pred ceEEeehhhhccCHH-----------HHHHHHHHHHhhccc-----ceEEEEeecccHHHHHHHHHhh
Confidence 689999999865321 2233333 3344333 4789999999999999988874
No 332
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=48.10 E-value=16 Score=28.20 Aligned_cols=20 Identities=15% Similarity=-0.034 Sum_probs=14.8
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 140 ~laral~~~p~llllDEPt~ 159 (213)
T cd03301 140 ALGRAIVREPKVFLMDEPLS 159 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 45556667899999999543
No 333
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.70 E-value=73 Score=24.12 Aligned_cols=20 Identities=30% Similarity=0.243 Sum_probs=15.2
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||-.+
T Consensus 118 ~la~al~~~p~vlllDEP~~ 137 (192)
T cd03232 118 TIGVELAAKPSILFLDEPTS 137 (192)
T ss_pred HHHHHHhcCCcEEEEeCCCc
Confidence 45566677899999999644
No 334
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=47.63 E-value=19 Score=28.26 Aligned_cols=20 Identities=10% Similarity=-0.027 Sum_probs=14.4
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 135 ~laral~~~p~vllLDEPt~ 154 (230)
T TIGR02770 135 MIALALLLEPPFLIADEPTT 154 (230)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 34555567899999999643
No 335
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=47.55 E-value=34 Score=25.68 Aligned_cols=58 Identities=29% Similarity=0.459 Sum_probs=30.8
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhC-----CCCCCCCCceEEEEEecCCCCCccHHHHh-cccc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG-----LNSSLYEDKIIMILAATNHPWDIDEAFRR-RFEK 86 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~-----~~~~~~~~~~v~viatTn~~~~ld~al~r-rf~~ 86 (202)
.--.|||||||.+-.. +-..|+..|+. +.+.....-.+-+|+||+. .+...+.. +|..
T Consensus 93 ~~GtL~Ld~I~~L~~~------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~~v~~g~fr~ 156 (168)
T PF00158_consen 93 NGGTLFLDEIEDLPPE------------LQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEELVEQGRFRE 156 (168)
T ss_dssp TTSEEEEETGGGS-HH------------HHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHHTTSS-H
T ss_pred cceEEeecchhhhHHH------------HHHHHHHHHhhchhccccccccccccceEEeecCc--CHHHHHHcCCChH
Confidence 3469999999998432 23445555542 1111001236889999995 55555555 5543
No 336
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=47.48 E-value=19 Score=29.27 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=15.2
Q ss_pred HHHHHhhhCCCeEEEEcccc
Q psy3540 6 RTNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD 25 (202)
-.+..|-..+|.|+++||--
T Consensus 146 l~laraL~~~p~llilDEPt 165 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPT 165 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCc
Confidence 34566667899999999953
No 337
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=47.33 E-value=59 Score=25.87 Aligned_cols=17 Identities=18% Similarity=0.061 Sum_probs=13.0
Q ss_pred HHHhhhCCCeEEEEccc
Q psy3540 8 NVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDei 24 (202)
.+.|--+.|+|++|||-
T Consensus 144 iARAlvh~P~i~vlDEP 160 (245)
T COG4555 144 IARALVHDPSILVLDEP 160 (245)
T ss_pred HHHHHhcCCCeEEEcCC
Confidence 34455689999999983
No 338
>KOG0479|consensus
Probab=47.26 E-value=42 Score=30.91 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=0.0
Q ss_pred EEEEccccccccccCCCCcchHHHHHHHHHHHH------HhCCCCCCCCCceEEEEEecCCCC-------------CccH
Q psy3540 18 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQ------MDGLNSSLYEDKIIMILAATNHPW-------------DIDE 78 (202)
Q Consensus 18 Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~------ld~~~~~~~~~~~v~viatTn~~~-------------~ld~ 78 (202)
|+.|||+|.+ +...+-.+.+.+.+ -.|+..+ -+.+--|+|+.|-.+ .|+.
T Consensus 401 VVCIDEFDKM---------sDiDRvAIHEVMEQqtVTIaKAGIHas--LNARCSVlAAANPvyG~Yd~~k~P~eNIgLpD 469 (818)
T KOG0479|consen 401 VVCIDEFDKM---------SDIDRVAIHEVMEQQTVTIAKAGIHAS--LNARCSVLAAANPVYGQYDQSKTPMENIGLPD 469 (818)
T ss_pred eEEehhcccc---------cchhHHHHHHHHhcceEEeEeccchhh--hccceeeeeecCccccccCCCCChhhccCCcH
Q ss_pred HHHhcccceeee
Q psy3540 79 AFRRRFEKRVYI 90 (202)
Q Consensus 79 al~rrf~~~i~i 90 (202)
+|++|||..+-+
T Consensus 470 SLLSRFDLlFv~ 481 (818)
T KOG0479|consen 470 SLLSRFDLLFVV 481 (818)
T ss_pred HHHhhhcEEEEE
No 339
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=46.88 E-value=21 Score=28.56 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=14.9
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 161 ~laral~~~p~llllDEPt~ 180 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTG 180 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 45555667899999999644
No 340
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.76 E-value=16 Score=29.87 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 160 ~laral~~~p~lLlLDEPt~ 179 (289)
T PRK13645 160 ALAGIIAMDGNTLVLDEPTG 179 (289)
T ss_pred HHHHHHHhCCCEEEEeCCcc
Confidence 34555667899999999643
No 341
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=46.72 E-value=19 Score=27.56 Aligned_cols=19 Identities=11% Similarity=0.004 Sum_probs=13.9
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.++++||--
T Consensus 136 ~laral~~~p~llllDEPt 154 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred HHHHHHHhCCCEEEEeCCC
Confidence 3455556789999999953
No 342
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=46.70 E-value=24 Score=27.28 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=14.7
Q ss_pred HHHhhhCCCeEEEEccccccc
Q psy3540 8 NVPSNSYRVSTIFIDEVDSLC 28 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~l~ 28 (202)
+..|-...|.++++||-.+-+
T Consensus 132 la~al~~~p~illlDEP~~~L 152 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNL 152 (204)
T ss_pred HHHHhccCCCEEEEcCCcccc
Confidence 334445689999999976543
No 343
>KOG3423|consensus
Probab=46.56 E-value=1.3e+02 Score=22.84 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCcccCCcccHHHHHHHccCCCHHH--HHHHHHHHHHHHHHHHHh---------cCChhHHhhhhhccCCC
Q psy3540 98 RYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSD--IANLARDAAMMSIRRKIM---------GQTPAQIKEIKQEDIDL 166 (202)
Q Consensus 98 R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~d--l~~l~~~A~~~a~~~~~~---------~~~~~~~~~~~~~~~~~ 166 (202)
-.+++..+-...++-++.-...+ -...||.+.| |+.|+.-|+..-+..... .............+...
T Consensus 73 l~efl~qLddYtP~IPDavt~~y-L~~aGf~~~D~rv~RLvsLaAQKfvSDIa~DA~Q~~k~r~~~~~~~~k~~~kdkK~ 151 (176)
T KOG3423|consen 73 LEEFLAQLDDYTPTIPDAVTDHY-LKKAGFQTSDPRVKRLVSLAAQKFVSDIANDALQHSKIRTKTAIGKDKKQAKDKKY 151 (176)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHH-HHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccce
Confidence 34555554444444454433322 3345777777 344444444333322211 00001111112233456
Q ss_pred CCcHHHHHHHHHHhCCCC
Q psy3540 167 PVTEKDFREAIARCRKSV 184 (202)
Q Consensus 167 ~it~~df~~Al~~~~Ps~ 184 (202)
.+|++|+..||++.-=++
T Consensus 152 tLtmeDL~~AL~EyGinv 169 (176)
T KOG3423|consen 152 TLTMEDLSPALAEYGINV 169 (176)
T ss_pred eeeHHHHHHHHHHhCccc
Confidence 899999999999875443
No 344
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.47 E-value=18 Score=28.03 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.++++||--
T Consensus 141 ~la~al~~~p~lllLDEPt 159 (220)
T cd03293 141 ALARALAVDPDVLLLDEPF 159 (220)
T ss_pred HHHHHHHcCCCEEEECCCC
Confidence 3455556789999999953
No 345
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.31 E-value=21 Score=29.06 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=15.1
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.||++||--+
T Consensus 150 ~laral~~~p~lllLDEPt~ 169 (279)
T PRK13635 150 AIAGVLALQPDIIILDEATS 169 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcc
Confidence 45566677999999999543
No 346
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=46.11 E-value=21 Score=28.74 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=15.1
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||-..
T Consensus 153 ~laral~~~p~llllDEPt~ 172 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTT 172 (265)
T ss_pred HHHHHHhcCCCEEEEeCccc
Confidence 45556667899999999644
No 347
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=46.06 E-value=23 Score=27.38 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=14.2
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 148 ~laral~~~p~llllDEPt 166 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPT 166 (216)
T ss_pred HHHHHHhcCCCEEEEeCCC
Confidence 4455566789999999953
No 348
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=45.78 E-value=46 Score=28.01 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=36.2
Q ss_pred HHHHHhhhCCCeEEEEccccccccccCCC-----CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecC
Q psy3540 6 RTNVPSNSYRVSTIFIDEVDSLCSMRGSD-----SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATN 71 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~-----~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn 71 (202)
.+....+...+.+|+||-+-++.+...-. ...+...|..+.++..|..+... .++.+|.|..
T Consensus 124 ~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~----~~~tvi~tNQ 190 (321)
T TIGR02012 124 IAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSK----SNTTAIFINQ 190 (321)
T ss_pred HHHHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHh----CCCEEEEEec
Confidence 34444566789999999999998743211 11123345556666655555443 4455665543
No 349
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=45.78 E-value=23 Score=27.49 Aligned_cols=20 Identities=10% Similarity=-0.001 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 134 ~laral~~~p~llllDEP~~ 153 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTN 153 (223)
T ss_pred HHHHHHhcCCCEEEECCCcc
Confidence 45556667899999999543
No 350
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.58 E-value=17 Score=28.69 Aligned_cols=20 Identities=10% Similarity=-0.004 Sum_probs=14.8
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 145 ~laral~~~p~llllDEPt~ 164 (242)
T cd03295 145 GVARALAADPPLLLMDEPFG 164 (242)
T ss_pred HHHHHHhcCCCEEEecCCcc
Confidence 45556667899999999633
No 351
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=45.52 E-value=25 Score=29.12 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=31.6
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.+..|-...|.++++||--+ +-.....+.+..++..+.. .+..||.+|+.++.+..
T Consensus 148 ~la~aL~~~P~lllLDEPt~--------gLD~~~~~~l~~~l~~l~~--------~g~till~sH~l~e~~~ 203 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTT--------GLDPQARHLMWERLRSLLA--------RGKTILLTTHFMEEAER 203 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCc--------CCCHHHHHHHHHHHHHHHh--------CCCEEEEECCCHHHHHH
Confidence 35666678999999999422 1122223334444444422 12357778887665543
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=45.51 E-value=28 Score=26.37 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=14.5
Q ss_pred HHHHhhhCC--CeEEEEccccc
Q psy3540 7 TNVPSNSYR--VSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~--P~Ii~iDeiD~ 26 (202)
.+..|-... |.|+++||--+
T Consensus 97 ~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 97 KLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred HHHHHHhhCCCCCEEEEeCCcc
Confidence 345555678 99999999643
No 353
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.46 E-value=19 Score=27.82 Aligned_cols=19 Identities=11% Similarity=0.037 Sum_probs=14.2
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 141 ~la~al~~~p~llllDEPt 159 (214)
T cd03297 141 ALARALAAQPELLLLDEPF 159 (214)
T ss_pred HHHHHHhcCCCEEEEcCCc
Confidence 4555666789999999953
No 354
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=45.04 E-value=53 Score=23.91 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=31.9
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCC
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLP 93 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P 93 (202)
..+|++||++.+... .. ......++..+ ... .. +++.++.-+...+......+...+.+..+
T Consensus 130 ~~~iIiDE~h~~~~~----~~----~~~~~~~~~~~---~~~----~~-~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 130 VDLVILDEAHRLLDG----GF----GDQLEKLLKLL---PKN----VQ-LLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CCEEEEECHHHHhcC----Cc----HHHHHHHHHhC---Ccc----ce-EEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 458999999998652 11 11223333322 221 22 34444444456666666656566666544
No 355
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=44.98 E-value=63 Score=24.83 Aligned_cols=16 Identities=19% Similarity=0.193 Sum_probs=12.5
Q ss_pred hCCCeEEEEccccccc
Q psy3540 13 SYRVSTIFIDEVDSLC 28 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~ 28 (202)
...|.++++||-.+-+
T Consensus 129 ~~~p~illlDEP~~gl 144 (198)
T cd03276 129 VMESPFRCLDEFDVFM 144 (198)
T ss_pred ccCCCEEEecCccccc
Confidence 3689999999976543
No 356
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=44.90 E-value=95 Score=24.22 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=14.8
Q ss_pred hhCCCeEEEEcccccccc
Q psy3540 12 NSYRVSTIFIDEVDSLCS 29 (202)
Q Consensus 12 ~~~~P~Ii~iDeiD~l~~ 29 (202)
+.+.|.+|+||.+..+..
T Consensus 120 ~~~~~~~vvID~l~~l~~ 137 (242)
T cd00984 120 KEHGLGLIVIDYLQLMSG 137 (242)
T ss_pred HhcCCCEEEEcCchhcCC
Confidence 455899999999998854
No 357
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=44.75 E-value=20 Score=27.88 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=14.5
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 155 ~laral~~~p~lllLDEPt~ 174 (228)
T cd03257 155 AIARALALNPKLLIADEPTS 174 (228)
T ss_pred HHHHHHhcCCCEEEecCCCC
Confidence 34555567899999999543
No 358
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=44.52 E-value=1.8e+02 Score=24.10 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=65.0
Q ss_pred CCeEEEEccccccccccCCC-C----cchHHHHHHHHHHHHHhCCCCCCCCCceE-EEEEecCC---CC--CccHHHHhc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSD-S----EHEASRRFKAELLIQMDGLNSSLYEDKII-MILAATNH---PW--DIDEAFRRR 83 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~-~----~~~~~~~~~~~ll~~ld~~~~~~~~~~~v-~viatTn~---~~--~ld~al~rr 83 (202)
-|.++-||++.+++....-. . -+...=.+...|+..+.+-..- .++.+ +++++|.. +. .++.++..+
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~--~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~ 233 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDF--KNGAVVTALAATSVSNAPKSPTLPVALGGK 233 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCcccc--CCCeEEEEEeccccccccCCccchhhhccc
Confidence 48899999999999764311 1 1122234556666665543332 22323 23666554 23 455566652
Q ss_pred cc---------------------ceeeecCCCHHHHHHHHHHHhcCcccCC----cccHHHHHHHccCCCHHHHH
Q psy3540 84 FE---------------------KRVYIPLPNEWARYQLLTLCLEGVVIDV----NLDFHKISKMLEGYTGSDIA 133 (202)
Q Consensus 84 f~---------------------~~i~i~~P~~~~R~~il~~~l~~~~~~~----~~~~~~la~~t~g~s~~dl~ 133 (202)
=. ..++++.-+.++-..++..|...--+.. ..-.+.+... .|-+++++.
T Consensus 234 ~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~-s~GNp~el~ 307 (309)
T PF10236_consen 234 EGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLS-SNGNPRELE 307 (309)
T ss_pred cCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHh-cCCCHHHhc
Confidence 22 2678888899999999999985433321 1122333333 345666654
No 359
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=44.51 E-value=20 Score=28.13 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=14.2
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 124 ~la~al~~~p~lllLDEPt 142 (230)
T TIGR01184 124 AIARALSIRPKVLLLDEPF 142 (230)
T ss_pred HHHHHHHcCCCEEEEcCCC
Confidence 3455566789999999953
No 360
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.42 E-value=23 Score=27.47 Aligned_cols=20 Identities=25% Similarity=0.213 Sum_probs=15.0
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 141 ~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 45566677899999999533
No 361
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=43.98 E-value=81 Score=24.30 Aligned_cols=56 Identities=7% Similarity=-0.091 Sum_probs=31.0
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.+..|-...|.|+++||--+=+ .......+.+++..+.. . . ..||.+|..++.++.
T Consensus 147 ~laral~~~p~llllDEPt~~L--------D~~~~~~l~~~l~~~~~---~----~-~tiii~sH~~~~~~~ 202 (214)
T PRK13543 147 ALARLWLSPAPLWLLDEPYANL--------DLEGITLVNRMISAHLR---G----G-GAALVTTHGAYAAPP 202 (214)
T ss_pred HHHHHHhcCCCEEEEeCCcccC--------CHHHHHHHHHHHHHHHh---C----C-CEEEEEecChhhhhh
Confidence 4455566789999999964322 12223344445544322 1 1 246667777666554
No 362
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=43.90 E-value=21 Score=28.47 Aligned_cols=20 Identities=15% Similarity=0.016 Sum_probs=14.9
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 150 ~laral~~~p~lLlLDEPt~ 169 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTT 169 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCc
Confidence 34555667899999999643
No 363
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=43.73 E-value=45 Score=31.67 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
++..+...+ ..|+++++||+-.= .+......+...++..+... +..+|.||+.++....
T Consensus 397 ~~~~Il~~~--~~~sLvLlDE~~~G-------tDp~eg~ala~aile~l~~~--------~~~vIitTH~~el~~~ 455 (782)
T PRK00409 397 NIVRILEKA--DKNSLVLFDELGAG-------TDPDEGAALAISILEYLRKR--------GAKIIATTHYKELKAL 455 (782)
T ss_pred HHHHHHHhC--CcCcEEEecCCCCC-------CCHHHHHHHHHHHHHHHHHC--------CCEEEEECChHHHHHH
Confidence 344444444 57999999997331 11122223334455544331 2367788888654443
No 364
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=43.66 E-value=38 Score=29.93 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=31.6
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.+..|-...|.|+++||--+ +-.....+.+..++..+.. . ....||.+|..++.+..
T Consensus 411 ~la~al~~~p~lllLDEPt~--------gLD~~~~~~l~~~L~~l~~---~----~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQ--------GLDPLNRQLVRRFVDVLIS---E----GETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHhcCCCEEEEcCccc--------cCCHHHHHHHHHHHHHHHh---c----CCcEEEEEecchhhhhh
Confidence 45566667999999999432 1122223344444444432 1 22346667777776654
No 365
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.58 E-value=21 Score=28.12 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=14.4
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 146 ~la~al~~~p~llllDEP~~ 165 (239)
T cd03296 146 ALARALAVEPKVLLLDEPFG 165 (239)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 34555567899999999543
No 366
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=43.49 E-value=73 Score=24.41 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=13.5
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 142 ~la~al~~~p~llllDEP 159 (213)
T cd03235 142 LLARALVQDPDLLLLDEP 159 (213)
T ss_pred HHHHHHHcCCCEEEEeCC
Confidence 344555678999999995
No 367
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=43.42 E-value=25 Score=26.42 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=14.5
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--.
T Consensus 107 ~laral~~~p~llllDEP~~ 126 (180)
T cd03214 107 LLARALAQEPPILLLDEPTS 126 (180)
T ss_pred HHHHHHhcCCCEEEEeCCcc
Confidence 34555567899999999543
No 368
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=43.38 E-value=34 Score=32.46 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=41.8
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc-----HHHHhcccce
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID-----EAFRRRFEKR 87 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld-----~al~rrf~~~ 87 (202)
...|.+|+|||+-.++... .....+..++..+.. .+.+++.+|..|.++- .+++.-.+.+
T Consensus 625 ~gr~~ii~iDEaw~~l~~~-------~~~~~i~~~~kt~RK--------~ng~~~~~TQs~~D~~~s~~~~~i~~n~~t~ 689 (789)
T PRK13853 625 DGRRFVMSCDEFRAYLLNP-------KFAAVVDKFLLTVRK--------NNGMLILATQQPEHVLESPLGASLVAQCMTK 689 (789)
T ss_pred CCCcEEEEEechhHHhCCH-------HHHHHHHHHHHHHHH--------cCeEEEEecCCHHHHHcCchHHHHHHhCCeE
Confidence 3579999999998887521 122344445544422 3456778888877654 3444466677
Q ss_pred eeecCCC
Q psy3540 88 VYIPLPN 94 (202)
Q Consensus 88 i~i~~P~ 94 (202)
|.+|-|.
T Consensus 690 I~Lpn~~ 696 (789)
T PRK13853 690 IFYPSPT 696 (789)
T ss_pred EEcCCcc
Confidence 7776664
No 369
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=43.38 E-value=23 Score=28.41 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=15.1
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 130 ~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 130 LLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCc
Confidence 45556667899999999643
No 370
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=43.31 E-value=25 Score=27.99 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 148 ~laral~~~p~llllDEP~~ 167 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTT 167 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 34556667899999999543
No 371
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=43.29 E-value=21 Score=30.07 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 150 ~lAraL~~~p~iLlLDEPt 168 (343)
T PRK11153 150 AIARALASNPKVLLCDEAT 168 (343)
T ss_pred HHHHHHHcCCCEEEEeCCc
Confidence 3455566789999999953
No 372
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=43.22 E-value=22 Score=28.43 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=15.0
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.||++||-.+
T Consensus 162 ~laral~~~p~llllDEPt~ 181 (262)
T PRK09984 162 AIARALMQQAKVILADEPIA 181 (262)
T ss_pred HHHHHHhcCCCEEEecCccc
Confidence 45556667999999999644
No 373
>PRK13695 putative NTPase; Provisional
Probab=43.21 E-value=90 Score=23.11 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=37.1
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC--CccHHHHhcccceeeecC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW--DIDEAFRRRFEKRVYIPL 92 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~--~ld~al~rrf~~~i~i~~ 92 (202)
.|.+|++||+..+- . ........+...++. +..+|++++... ..-+.+.++.+-.+..
T Consensus 96 ~~~~lllDE~~~~e------~---~~~~~~~~l~~~~~~---------~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~-- 155 (174)
T PRK13695 96 EADVIIIDEIGKME------L---KSPKFVKAVEEVLDS---------EKPVIATLHRRSVHPFVQEIKSRPGGRVYE-- 155 (174)
T ss_pred CCCEEEEECCCcch------h---hhHHHHHHHHHHHhC---------CCeEEEEECchhhHHHHHHHhccCCcEEEE--
Confidence 68899999963220 1 111223333333321 125666777632 2234455566544432
Q ss_pred CCHHHHHHHHHHHhc
Q psy3540 93 PNEWARYQLLTLCLE 107 (202)
Q Consensus 93 P~~~~R~~il~~~l~ 107 (202)
-+.+.|.++....+.
T Consensus 156 ~~~~~r~~~~~~~~~ 170 (174)
T PRK13695 156 LTPENRDSLPFEILN 170 (174)
T ss_pred EcchhhhhHHHHHHH
Confidence 266777777666554
No 374
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=43.02 E-value=23 Score=28.51 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 160 ~laral~~~p~illLDEPt 178 (265)
T TIGR02769 160 NIARALAVKPKLIVLDEAV 178 (265)
T ss_pred HHHHHHhcCCCEEEEeCCc
Confidence 3455566789999999963
No 375
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=42.94 E-value=25 Score=27.67 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=14.6
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 155 ~la~al~~~p~llllDEPt~ 174 (243)
T TIGR02315 155 AIARALAQQPDLILADEPIA 174 (243)
T ss_pred HHHHHHhcCCCEEEEeCCcc
Confidence 34555567899999999643
No 376
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription]
Probab=42.77 E-value=33 Score=23.95 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=37.5
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChh--HHhh--hh-hccCCCCCcHHHHHHHHHHhCCCCC
Q psy3540 118 HKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPA--QIKE--IK-QEDIDLPVTEKDFREAIARCRKSVT 185 (202)
Q Consensus 118 ~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~--~~~~--~~-~~~~~~~it~~df~~Al~~~~Ps~s 185 (202)
..-++..++|+..=+..+|.+|...|-.|.....+.- .... .. ....++.+|.+.|..|=+.+.|..+
T Consensus 30 ~dt~~~L~e~V~dY~~~~ctna~~~Aq~rnK~k~eDfkfaLr~DpkKlgRveeLl~tn~~i~~Akk~F~~~ds 102 (126)
T COG5248 30 YDTAEALHEYVLDYMSILCTNAHNMAQVRNKTKTEDFKFALRRDPKKLGRVEELLITNEEIKLAKKAFEPKDS 102 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhChHHHhHHHHHHHhhHHHHHHhcccCchhH
Confidence 3456666788888899999999998875532110000 0000 00 0001234566667777777777644
No 377
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.77 E-value=23 Score=28.63 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=14.1
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.||++||--
T Consensus 170 ~lAral~~~p~illLDEPt 188 (269)
T cd03294 170 GLARALAVDPDILLMDEAF 188 (269)
T ss_pred HHHHHHhcCCCEEEEcCCC
Confidence 3455566789999999953
No 378
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=42.73 E-value=22 Score=28.49 Aligned_cols=19 Identities=11% Similarity=-0.010 Sum_probs=14.1
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.++++||--
T Consensus 138 ~laral~~~p~lllLDEPt 156 (255)
T PRK11248 138 GIARALAANPQLLLLDEPF 156 (255)
T ss_pred HHHHHHhcCCCEEEEeCCC
Confidence 3455556789999999953
No 379
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.66 E-value=22 Score=27.88 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 146 ~ia~al~~~p~llllDEPt 164 (235)
T cd03261 146 ALARALALDPELLLYDEPT 164 (235)
T ss_pred HHHHHHhcCCCEEEecCCc
Confidence 3455556789999999953
No 380
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=42.42 E-value=2.1e+02 Score=24.05 Aligned_cols=76 Identities=9% Similarity=0.118 Sum_probs=48.0
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCC----ccHHHHhcccceeee
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWD----IDEAFRRRFEKRVYI 90 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~----ld~al~rrf~~~i~i 90 (202)
.|-||+|+++|++- ..+++.|+..+...... -.-++|+|-+..++. ++....+++.... |
T Consensus 199 ~~lVIi~eD~EsF~------------~~VL~dlI~ils~~~~~---lP~vli~GiaTs~~~~~~~Lp~~~~~~L~~~~-F 262 (330)
T PF07034_consen 199 PPLVIIFEDFESFD------------SQVLQDLILILSSYLDR---LPFVLIFGIATSVEAFHSRLPRSTLSLLRIKK-F 262 (330)
T ss_pred CCEEEEEcccccCC------------HHHHHHHHHHHHhccCC---cCEEEEEecCCChHHHHhhCCHHHHhhcCceE-E
Confidence 48999999999873 24788888887766554 245677775555554 4455555554443 3
Q ss_pred cCC-CHHHHHHHHHHHh
Q psy3540 91 PLP-NEWARYQLLTLCL 106 (202)
Q Consensus 91 ~~P-~~~~R~~il~~~l 106 (202)
..+ ....-..+++..+
T Consensus 263 ~~~~~~~~l~~v~~~~l 279 (330)
T PF07034_consen 263 QLQSSSEILERVLEKVL 279 (330)
T ss_pred EeCChHHHHHHHHHHHh
Confidence 444 4455556666665
No 381
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=42.27 E-value=1e+02 Score=26.66 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=47.3
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc--------HHHHhccc
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID--------EAFRRRFE 85 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld--------~al~rrf~ 85 (202)
..|.++++||+..++.-. .+..++...-+ .++.++..+..+..+. .+++.-+.
T Consensus 269 ~~~~~~~lDE~~~l~~~~-----------~l~~~l~~~R~--------~G~~~~~~~Qs~~Ql~~~yg~~~a~~i~~n~~ 329 (410)
T cd01127 269 ERRLWFFIDELPSLHKLP-----------DLVDALAEGRK--------FGGCFVLGIQSYAQLEDIYGKKGAQTLASNLR 329 (410)
T ss_pred CCcEEEEEECccccccch-----------HHHHHHHHHhc--------CCCEEEEEEcCHHHHHHHHCHHHHHHHHhhcC
Confidence 357899999998885421 13334433322 4456667777766654 23555788
Q ss_pred ceeeecCCCHHHHHHHHHHHhcC
Q psy3540 86 KRVYIPLPNEWARYQLLTLCLEG 108 (202)
Q Consensus 86 ~~i~i~~P~~~~R~~il~~~l~~ 108 (202)
..+.++..+.+....+ ...++.
T Consensus 330 ~~i~~~~~d~~ta~~~-s~~lG~ 351 (410)
T cd01127 330 TRIVLAAPDAKTAEHA-SDSLGE 351 (410)
T ss_pred cEEEEeCCCHHHHHHH-HHhcCC
Confidence 8999998887776655 455544
No 382
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=42.25 E-value=23 Score=28.59 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=13.5
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 153 ~laral~~~p~lllLDEP 170 (269)
T PRK11831 153 ALARAIALEPDLIMFDEP 170 (269)
T ss_pred HHHHHHhcCCCEEEEcCC
Confidence 345555678999999995
No 383
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=42.24 E-value=1.1e+02 Score=23.28 Aligned_cols=71 Identities=15% Similarity=0.091 Sum_probs=37.6
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh---cccceeeecC
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR---RFEKRVYIPL 92 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r---rf~~~i~i~~ 92 (202)
..+|+||||-.+-- ....|...++.+-.+ ++. +|+|-.+-+ -||-+-+ +++..+.
T Consensus 101 aDvIIIDEIGpMEl-------------ks~~f~~~ve~vl~~----~kp-liatlHrrs-r~P~v~~ik~~~~v~v~--- 158 (179)
T COG1618 101 ADVIIIDEIGPMEL-------------KSKKFREAVEEVLKS----GKP-LIATLHRRS-RHPLVQRIKKLGGVYVF--- 158 (179)
T ss_pred CCEEEEecccchhh-------------ccHHHHHHHHHHhcC----CCc-EEEEEeccc-CChHHHHhhhcCCEEEE---
Confidence 46899999854421 123344444444433 222 555555433 3776655 5555544
Q ss_pred CCHHHHHHHHHHHhcC
Q psy3540 93 PNEWARYQLLTLCLEG 108 (202)
Q Consensus 93 P~~~~R~~il~~~l~~ 108 (202)
.+.+.|-.|+...+..
T Consensus 159 lt~~NR~~i~~~Il~~ 174 (179)
T COG1618 159 LTPENRNRILNEILSV 174 (179)
T ss_pred EccchhhHHHHHHHHH
Confidence 4555566777766643
No 384
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.21 E-value=23 Score=29.02 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=14.8
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-..+|.|+++||--+
T Consensus 155 ~lAraL~~~P~llllDEPt~ 174 (290)
T PRK13634 155 AIAGVLAMEPEVLVLDEPTA 174 (290)
T ss_pred HHHHHHHcCCCEEEEECCcc
Confidence 34555567999999999643
No 385
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=42.20 E-value=1.7e+02 Score=22.99 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc-----
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID----- 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld----- 77 (202)
.+..+.+.+....|.+|+||.+-.+... ...+......+...|....+.. +-.|+++.=++....-+
T Consensus 99 ~~~~l~~~~~~~~~~lvviDpl~~~~~~--~~~d~~~~~~~~~~L~~~a~~~------g~avl~v~H~~K~~~~~~~~~~ 170 (239)
T cd01125 99 EFERIIEQLLIRRIDLVVIDPLVSFHGV--SENDNGAMDAVIKALRRIAAQT------GAAILLVHHVRKGSAKDGDTQE 170 (239)
T ss_pred HHHHHHHHHHhcCCCEEEECChHHhCCC--CcCCHHHHHHHHHHHHHHHHHh------CCEEEEEeccCcccccCccccc
Confidence 4556666666789999999988776321 1122222233333333322221 12355555555433322
Q ss_pred -----HHHHhcccceeeecCCCHHHHHH
Q psy3540 78 -----EAFRRRFEKRVYIPLPNEWARYQ 100 (202)
Q Consensus 78 -----~al~rrf~~~i~i~~P~~~~R~~ 100 (202)
.++..-.+..+.+..++.++..+
T Consensus 171 ~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 171 AARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 23333334566666666666555
No 386
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.19 E-value=22 Score=27.87 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.++++||--
T Consensus 150 ~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 150 GIARALANNPKVLLCDEAT 168 (233)
T ss_pred HHHHHHhcCCCEEEecCCC
Confidence 3455556789999999953
No 387
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=42.17 E-value=51 Score=22.02 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=36.5
Q ss_pred EEEEecCCCCCccHHHHhc---ccceeeecCCCHHHHHHHHHHHhcCcc
Q psy3540 65 MILAATNHPWDIDEAFRRR---FEKRVYIPLPNEWARYQLLTLCLEGVV 110 (202)
Q Consensus 65 ~viatTn~~~~ld~al~rr---f~~~i~i~~P~~~~R~~il~~~l~~~~ 110 (202)
+||.+++-|..+--.|.|. ..--++++-++..-|..+|.......+
T Consensus 2 ~Viv~~~vP~~lRG~Ltrwl~Ei~~GVyVg~~s~rVRe~lW~~v~~~~~ 50 (86)
T PF09707_consen 2 TVIVLEAVPPRLRGFLTRWLLEIRPGVYVGNVSARVRERLWERVTEWIG 50 (86)
T ss_pred EEEEEecCChhHhchhhheeEecCCCcEEcCCCHHHHHHHHHHHHhhCC
Confidence 5778888888777777773 355688999999999999999987543
No 388
>PRK10908 cell division protein FtsE; Provisional
Probab=42.16 E-value=27 Score=27.14 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=14.4
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 147 ~laral~~~p~llllDEPt~ 166 (222)
T PRK10908 147 GIARAVVNKPAVLLADEPTG 166 (222)
T ss_pred HHHHHHHcCCCEEEEeCCCC
Confidence 34555567899999999533
No 389
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=42.15 E-value=75 Score=24.28 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=13.5
Q ss_pred HHHhhhCCCeEEEEcccc
Q psy3540 8 NVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD 25 (202)
+..|-...|.|+++||--
T Consensus 146 la~al~~~p~llllDEP~ 163 (213)
T cd03262 146 IARALAMNPKVMLFDEPT 163 (213)
T ss_pred HHHHHhcCCCEEEEeCCc
Confidence 445556789999999953
No 390
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.05 E-value=33 Score=27.67 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 152 ~laral~~~p~lllLDEP~~ 171 (271)
T PRK13632 152 AIASVLALNPEIIIFDESTS 171 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcc
Confidence 34555667899999999643
No 391
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=42.03 E-value=48 Score=25.18 Aligned_cols=19 Identities=16% Similarity=0.010 Sum_probs=13.7
Q ss_pred HHHhhhCCCeEEEEccccc
Q psy3540 8 NVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~ 26 (202)
+..|-...|.++++||--+
T Consensus 138 la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 138 LARLWLSRAPLWILDEPTT 156 (198)
T ss_pred HHHHHhcCCCEEEEeCCCc
Confidence 4445556899999999643
No 392
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.90 E-value=27 Score=26.83 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=14.8
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 138 ~la~al~~~p~~lllDEP~~ 157 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFS 157 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCc
Confidence 35556667899999999543
No 393
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=41.88 E-value=45 Score=25.74 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=41.2
Q ss_pred HHHHHhhhCCCeEEEEccccccccccCCCC-cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-----CccHH
Q psy3540 6 RTNVPSNSYRVSTIFIDEVDSLCSMRGSDS-EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-----DIDEA 79 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-----~ld~a 79 (202)
.+...+. ..|.+|+||-+-+++....... ......+.+..++..|..+... .++.||.++.... ...|+
T Consensus 95 ~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~----~~~~vi~t~q~~~~~~~~~~~p~ 169 (218)
T cd01394 95 ETETFAD-EKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARK----HDVAVVITNQVYSDVGSGSVRPL 169 (218)
T ss_pred HHHHHHh-cCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHH----hCCEEEEecCCEEcCCCCccccc
Confidence 3443333 2489999999999863221111 1112222333444444444333 4456666544322 22233
Q ss_pred ---HHh-cccceeeecCCC
Q psy3540 80 ---FRR-RFEKRVYIPLPN 94 (202)
Q Consensus 80 ---l~r-rf~~~i~i~~P~ 94 (202)
... ..|-+|.+....
T Consensus 170 ~g~~~~~~~d~~i~l~~~~ 188 (218)
T cd01394 170 GGHTLEHWSKVILRLEKLR 188 (218)
T ss_pred CCcchhcceeEEEEEEEcC
Confidence 122 557777777665
No 394
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=41.88 E-value=2e+02 Score=25.59 Aligned_cols=119 Identities=21% Similarity=0.280 Sum_probs=63.2
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHH-HHhCCCCCCCCCceEEEEEecCCCCCccHHHHh-ccc-------c
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLI-QMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR-RFE-------K 86 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~-~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r-rf~-------~ 86 (202)
--.||+|||..+-- ....+++-.|.+ ++..+.++..-+-.|-||++||+ +|...+-. +|- .
T Consensus 236 GGTLfLDEI~~mpl--------~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~--dL~~~v~~G~FReDLyyRLn 305 (464)
T COG2204 236 GGTLFLDEIGEMPL--------ELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNR--DLEEEVAAGRFREDLYYRLN 305 (464)
T ss_pred CceEEeeccccCCH--------HHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCc--CHHHHHHcCCcHHHHHhhhc
Confidence 35899999977632 222233333322 12233332112245889999996 44444444 442 3
Q ss_pred eeeecCCCHHHHH----HHHHHHhcCcc----c-CCcccHHHHHHHcc-CC--CHHHHHHHHHHHHHHHH
Q psy3540 87 RVYIPLPNEWARY----QLLTLCLEGVV----I-DVNLDFHKISKMLE-GY--TGSDIANLARDAAMMSI 144 (202)
Q Consensus 87 ~i~i~~P~~~~R~----~il~~~l~~~~----~-~~~~~~~~la~~t~-g~--s~~dl~~l~~~A~~~a~ 144 (202)
++.+.+|..-+|. .++++++++.. . ...++-+.++..+. .| +-++|+++|.+++..+-
T Consensus 306 V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~ 375 (464)
T COG2204 306 VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSE 375 (464)
T ss_pred cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCC
Confidence 6667777666554 35566664321 1 13344444444442 22 45788888888876653
No 395
>PRK06526 transposase; Provisional
Probab=41.81 E-value=31 Score=27.90 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.1
Q ss_pred CCCeEEEEccccccc
Q psy3540 14 YRVSTIFIDEVDSLC 28 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~ 28 (202)
..+.+|+|||++.+.
T Consensus 158 ~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 158 GRYPLLIVDEVGYIP 172 (254)
T ss_pred ccCCEEEEcccccCC
Confidence 357899999998864
No 396
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=41.81 E-value=31 Score=25.66 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=14.6
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.++++||--
T Consensus 106 ~la~al~~~p~~lllDEPt 124 (173)
T cd03246 106 GLARALYGNPRILVLDEPN 124 (173)
T ss_pred HHHHHHhcCCCEEEEECCc
Confidence 4556667789999999953
No 397
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=41.70 E-value=24 Score=28.40 Aligned_cols=20 Identities=20% Similarity=0.071 Sum_probs=14.6
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 159 ~laral~~~p~lllLDEPt~ 178 (267)
T PRK15112 159 GLARALILRPKVIIADEALA 178 (267)
T ss_pred HHHHHHHhCCCEEEEcCCcc
Confidence 34555567899999999644
No 398
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=41.66 E-value=24 Score=28.88 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.||++||--+
T Consensus 154 ~iAraL~~~P~llllDEPt~ 173 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTA 173 (287)
T ss_pred HHHHHHHcCCCEEEEECCcc
Confidence 44556667899999999533
No 399
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.62 E-value=26 Score=26.24 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=14.9
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 110 ~la~al~~~p~llilDEP~~ 129 (178)
T cd03229 110 ALARALAMDPDVLLLDEPTS 129 (178)
T ss_pred HHHHHHHCCCCEEEEeCCcc
Confidence 45566667899999999543
No 400
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=41.47 E-value=36 Score=27.37 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=14.2
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 161 ~laral~~~p~lllLDEPt 179 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPC 179 (264)
T ss_pred HHHHHHhcCCCEEEEeCCC
Confidence 4555556789999999953
No 401
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=41.45 E-value=26 Score=26.87 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=14.4
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 144 ~laral~~~p~llllDEPt~ 163 (211)
T cd03225 144 AIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 34555567899999999533
No 402
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=41.42 E-value=82 Score=24.02 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=13.8
Q ss_pred HHHhhhCCCeEEEEccccc
Q psy3540 8 NVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~ 26 (202)
+..|-...|.++++||--+
T Consensus 137 la~al~~~p~llllDEPt~ 155 (208)
T cd03268 137 IALALLGNPDLLILDEPTN 155 (208)
T ss_pred HHHHHhcCCCEEEECCCcc
Confidence 4455566899999999543
No 403
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=41.15 E-value=67 Score=30.80 Aligned_cols=59 Identities=14% Similarity=0.006 Sum_probs=33.3
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCc
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~l 76 (202)
+.+..+++.|. .++++++||+=. +. +......+...++..+....+ ..++.+|...+..
T Consensus 660 ~e~a~IL~~at--~~sLvllDE~Gr-----GT--~~~dg~aia~ai~e~l~~~~~-------~~~~~~TH~~eL~ 718 (840)
T TIGR01070 660 TEAANILHNAT--ENSLVLFDEIGR-----GT--STYDGLALAWAIAEYLHEHIR-------AKTLFATHYFELT 718 (840)
T ss_pred HHHHHHHhhCC--CCEEEEEccCCC-----CC--ChhHHHHHHHHHHHHHHhcCC-------CEEEEEcCchHHH
Confidence 45677777765 589999999722 22 112223344455555544222 2566788876543
No 404
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=41.00 E-value=31 Score=28.04 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=14.5
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 154 ~laral~~~p~llllDEPt~ 173 (280)
T PRK13633 154 AIAGILAMRPECIIFDEPTA 173 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcc
Confidence 34555567899999999543
No 405
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=40.93 E-value=68 Score=24.52 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=10.8
Q ss_pred CCCeEEEEccccc
Q psy3540 14 YRVSTIFIDEVDS 26 (202)
Q Consensus 14 ~~P~Ii~iDeiD~ 26 (202)
..|.++++||.-+
T Consensus 107 ~~~~llllDEp~~ 119 (202)
T cd03243 107 TPRSLVLIDELGR 119 (202)
T ss_pred cCCeEEEEecCCC
Confidence 5899999999744
No 406
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.87 E-value=38 Score=27.06 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 160 ~laral~~~p~lllLDEPt 178 (259)
T PRK14260 160 CIARALAIKPKVLLMDEPC 178 (259)
T ss_pred HHHHHHhcCCCEEEEcCCC
Confidence 3455556789999999954
No 407
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=40.84 E-value=24 Score=28.48 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=15.1
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.||++||--+
T Consensus 161 ~laral~~~p~lllLDEPt~ 180 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVS 180 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCc
Confidence 45566677999999999543
No 408
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=40.71 E-value=30 Score=28.07 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=15.1
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 146 ~laral~~~p~lllLDEPt~ 165 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTS 165 (274)
T ss_pred HHHHHHHcCCCEEEEeCCcc
Confidence 45566677999999999543
No 409
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=40.44 E-value=1.2e+02 Score=24.02 Aligned_cols=56 Identities=7% Similarity=0.013 Sum_probs=29.8
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeec
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIP 91 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~ 91 (202)
..|.++++||-.+-+... ....++..+..+... ..+|.+|+++ .+....|+++-+.
T Consensus 187 ~~~~illlDEPt~~ld~~-----------~~~~~~~~l~~~~~g------~~ii~iSH~~-----~~~~~~d~v~~~~ 242 (251)
T cd03273 187 KPAPMYILDEVDAALDLS-----------HTQNIGRMIKTHFKG------SQFIVVSLKE-----GMFNNANVLFRTR 242 (251)
T ss_pred cCCCEEEEeCCCcCCCHH-----------HHHHHHHHHHHHcCC------CEEEEEECCH-----HHHHhCCEEEEEE
Confidence 356899999976543211 123333444433221 3566777773 3444456666554
No 410
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=40.36 E-value=25 Score=27.88 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 158 ~laral~~~p~vlllDEP~ 176 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPT 176 (253)
T ss_pred HHHHHHhcCCCEEEEcCCC
Confidence 4455566789999999963
No 411
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=40.23 E-value=90 Score=21.03 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 98 RYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 98 R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
...||..+-........+.+.+|+++. |++..+++..|..-
T Consensus 49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l-~~~~~~v~~al~~L 89 (102)
T PF08784_consen 49 QDKVLNFIKQQPNSEEGVHVDEIAQQL-GMSENEVRKALDFL 89 (102)
T ss_dssp HHHHHHHHHC----TTTEEHHHHHHHS-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHh-CcCHHHHHHHHHHH
Confidence 334444433323334568999999999 99999998877653
No 412
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=40.09 E-value=29 Score=27.67 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=14.4
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 162 ~laral~~~p~llllDEPt 180 (257)
T PRK10619 162 SIARALAMEPEVLLFDEPT 180 (257)
T ss_pred HHHHHHhcCCCEEEEeCCc
Confidence 4555666789999999953
No 413
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=40.03 E-value=27 Score=27.33 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=14.4
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||-..
T Consensus 139 ~laral~~~p~lllLDEP~~ 158 (232)
T PRK10771 139 ALARCLVREQPILLLDEPFS 158 (232)
T ss_pred HHHHHHhcCCCEEEEeCCcc
Confidence 34455567899999999643
No 414
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=39.98 E-value=31 Score=27.32 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=14.6
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 154 ~la~al~~~p~lllLDEPt~ 173 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTS 173 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCc
Confidence 34555567899999999644
No 415
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=39.73 E-value=1.3e+02 Score=28.93 Aligned_cols=102 Identities=11% Similarity=0.032 Sum_probs=57.1
Q ss_pred HhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceee
Q psy3540 10 PSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVY 89 (202)
Q Consensus 10 ~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~ 89 (202)
.+....|+.++||+...+-... ...-+.-|+ +... +++.+|.+|...-.+.-+=.|-=+..++
T Consensus 124 la~~~~pl~LVlDDyHli~~~~--------l~~~l~fLl---~~~P------~~l~lvv~SR~rP~l~la~lRlr~~llE 186 (894)
T COG2909 124 LASYEGPLYLVLDDYHLISDPA--------LHEALRFLL---KHAP------ENLTLVVTSRSRPQLGLARLRLRDELLE 186 (894)
T ss_pred HHhhcCceEEEeccccccCccc--------HHHHHHHHH---HhCC------CCeEEEEEeccCCCCcccceeehhhHHh
Confidence 4566789999999998873211 112233333 2222 4566667776643343333331122233
Q ss_pred ecC----CCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHH
Q psy3540 90 IPL----PNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGS 130 (202)
Q Consensus 90 i~~----P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~ 130 (202)
++. -+.++-.++|+...+ .+++ .-++..|-..|+|+.++
T Consensus 187 i~~~~Lrf~~eE~~~fl~~~~~-l~Ld-~~~~~~L~~~teGW~~a 229 (894)
T COG2909 187 IGSEELRFDTEEAAAFLNDRGS-LPLD-AADLKALYDRTEGWAAA 229 (894)
T ss_pred cChHhhcCChHHHHHHHHHcCC-CCCC-hHHHHHHHhhcccHHHH
Confidence 322 366777777766552 2333 55788888999998754
No 416
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=39.45 E-value=57 Score=25.14 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=14.0
Q ss_pred HHHHHhhhCCCeEEEEccccccc
Q psy3540 6 RTNVPSNSYRVSTIFIDEVDSLC 28 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD~l~ 28 (202)
-+|+..+.....+++|||+|+=+
T Consensus 149 l~lA~~~~~~~p~~ilDEvd~~L 171 (220)
T PF02463_consen 149 LLLALQRYKPSPFLILDEVDAAL 171 (220)
T ss_dssp HHHHHHTCS--SEEEEESTTTTS
T ss_pred ccccccccccccccccccccccc
Confidence 34444444444589999999865
No 417
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=39.40 E-value=1.2e+02 Score=22.94 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=14.9
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||-.+
T Consensus 121 ~laral~~~p~illlDEP~~ 140 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTS 140 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCc
Confidence 45556667899999999644
No 418
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=39.28 E-value=29 Score=27.25 Aligned_cols=20 Identities=10% Similarity=-0.012 Sum_probs=14.1
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 147 ~la~al~~~p~illlDEPt~ 166 (237)
T PRK11614 147 AIGRALMSQPRLLLLDEPSL 166 (237)
T ss_pred HHHHHHHhCCCEEEEcCccc
Confidence 34455556899999999543
No 419
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.16 E-value=30 Score=27.86 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=14.9
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 146 ~laraL~~~p~lllLDEPt~ 165 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTA 165 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcc
Confidence 45556667899999999643
No 420
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=39.11 E-value=41 Score=24.33 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=12.8
Q ss_pred CCeEEEEcccccccc
Q psy3540 15 RVSTIFIDEVDSLCS 29 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~ 29 (202)
..++|+|||+|.+..
T Consensus 119 ~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 119 RLSLIVIDEAHHLSD 133 (169)
T ss_dssp TESEEEEETHHHHHH
T ss_pred cceeeccCccccccc
Confidence 468899999999975
No 421
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=39.09 E-value=58 Score=25.76 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHHHhCCCCCCC-CCceEEEEEecCCCCCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcc
Q psy3540 37 HEASRRFKAELLIQMDGLNSSLY-EDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNL 115 (202)
Q Consensus 37 ~~~~~~~~~~ll~~ld~~~~~~~-~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~ 115 (202)
....++++.+||.++--+.-+.. .-++++-+| +..-||..+ =+.|..+++..||..++.....+++.
T Consensus 18 ~siYrrvv~ELLVe~HLl~~n~~F~yD~lfalG-----------~vt~fd~fm-~GY~p~~~~~~If~Alc~a~~~dp~~ 85 (216)
T PF11264_consen 18 PSIYRRVVDELLVELHLLSVNKDFQYDPLFALG-----------LVTVFDRFM-QGYPPEEDKDSIFNALCQALGFDPEQ 85 (216)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCceeCchHHhh-----------HHHHHHHHh-cCCCChhHHHHHHHHHHHHcCCCHHH
Confidence 35678999999998876554311 113344333 223455433 37889999999999999888777542
Q ss_pred ---cHHHHHHHccCCCHHHHHHHHHH
Q psy3540 116 ---DFHKISKMLEGYTGSDIANLARD 138 (202)
Q Consensus 116 ---~~~~la~~t~g~s~~dl~~l~~~ 138 (202)
|-..+.....|.++.||......
T Consensus 86 ~r~dA~~l~~~a~~~s~~~l~~~l~~ 111 (216)
T PF11264_consen 86 YRQDAEKLEEWAKGKSIEDLLSWLSQ 111 (216)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 45566667789999999888754
No 422
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=38.91 E-value=28 Score=29.50 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 150 ~IARAL~~~P~iLLlDEPts 169 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATS 169 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcc
Confidence 34555667899999999643
No 423
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=38.45 E-value=92 Score=24.24 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=14.4
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 153 ~la~al~~~p~llllDEPt~ 172 (236)
T cd03219 153 EIARALATDPKLLLLDEPAA 172 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 34555567899999999533
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=38.38 E-value=74 Score=30.22 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=30.4
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW 74 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~ 74 (202)
+++..++..+ ..|++|++||.-.- .+......+...++..+... +..+|.||...+
T Consensus 391 ~~~~~il~~~--~~~sLvLlDE~g~G-------tD~~eg~ala~aiLe~l~~~--------g~~viitTH~~e 446 (771)
T TIGR01069 391 KNISAILSKT--TENSLVLFDELGAG-------TDPDEGSALAISILEYLLKQ--------NAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHhc--CCCcEEEecCCCCC-------CCHHHHHHHHHHHHHHHHhc--------CCEEEEECChHH
Confidence 3444555544 47899999996321 12222233444556555431 135677888754
No 425
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=38.36 E-value=80 Score=24.92 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=18.7
Q ss_pred HHHHHHHhhhCCCeEEEEccccccc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLC 28 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~ 28 (202)
+.++...+....|.++++|++-.+.
T Consensus 106 l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 106 LKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHhcCCCEEEEECccHHh
Confidence 3445555666789999999998875
No 426
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=38.27 E-value=81 Score=24.13 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=14.8
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 146 ~laral~~~p~llllDEPt~ 165 (214)
T cd03292 146 AIARAIVNSPTILIADEPTG 165 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCC
Confidence 34555667899999999543
No 427
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.12 E-value=32 Score=27.83 Aligned_cols=20 Identities=10% Similarity=0.066 Sum_probs=15.1
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 155 ~la~al~~~p~lllLDEPt~ 174 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTA 174 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcc
Confidence 45556677899999999643
No 428
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.05 E-value=28 Score=28.38 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=14.9
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 155 ~laraL~~~p~illlDEPt~ 174 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTA 174 (286)
T ss_pred HHHHHHHhCCCEEEEECCcc
Confidence 44555667999999999644
No 429
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=37.97 E-value=36 Score=26.94 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=31.7
Q ss_pred CCCeEEEEcccccccc------ccCC-C--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEec
Q psy3540 14 YRVSTIFIDEVDSLCS------MRGS-D--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAAT 70 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~------~r~~-~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatT 70 (202)
....+|+||+++.+.. .+.. . .+......+...|+..+..+.+. +.+|+++|-.
T Consensus 80 ~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~---g~nII~tAhe 142 (220)
T TIGR01618 80 VKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKES---NKNIYATAWE 142 (220)
T ss_pred ccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhC---CCcEEEEEee
Confidence 3468999999999864 2211 1 12233445666777777666553 2456666643
No 430
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=37.79 E-value=40 Score=26.24 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=32.3
Q ss_pred hhC-CCeEEEEccccccccccC-CCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecC
Q psy3540 12 NSY-RVSTIFIDEVDSLCSMRG-SDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATN 71 (202)
Q Consensus 12 ~~~-~P~Ii~iDeiD~l~~~r~-~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn 71 (202)
... .|.+|+||-+.+++...- .........+.+..++..|..+... .++.||.|..
T Consensus 111 ~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~----~~~avl~tn~ 168 (235)
T cd01123 111 IESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADE----FNVAVVITNQ 168 (235)
T ss_pred hhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH----hCCEEEEecc
Confidence 445 899999999999864211 1111122334566666666665543 4455665543
No 431
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=37.76 E-value=31 Score=27.68 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=14.2
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 160 ~laral~~~p~vllLDEP~~ 179 (261)
T PRK14258 160 CIARALAVKPKVLLMDEPCF 179 (261)
T ss_pred HHHHHHhcCCCEEEEeCCCc
Confidence 34445557899999999543
No 432
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=37.72 E-value=33 Score=30.54 Aligned_cols=21 Identities=10% Similarity=-0.092 Sum_probs=15.4
Q ss_pred HHHHHhhhCCCeEEEEccccc
Q psy3540 6 RTNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD~ 26 (202)
-.+..|-...|.|+++||--+
T Consensus 177 v~iA~al~~~p~lllLDEPt~ 197 (520)
T TIGR03269 177 VVLARQLAKEPFLFLADEPTG 197 (520)
T ss_pred HHHHHHHhcCCCEEEeeCCcc
Confidence 345566677899999999533
No 433
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=37.70 E-value=30 Score=28.99 Aligned_cols=19 Identities=11% Similarity=-0.004 Sum_probs=14.8
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.||++||--
T Consensus 168 ~iArAL~~~P~llilDEPt 186 (330)
T PRK15093 168 MIAIALANQPRLLIADEPT 186 (330)
T ss_pred HHHHHHHCCCCEEEEeCCC
Confidence 4566667889999999953
No 434
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.57 E-value=33 Score=27.97 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=14.6
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.||++||--
T Consensus 155 ~laral~~~p~lLlLDEPt 173 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPA 173 (287)
T ss_pred HHHHHHHcCCCEEEEECCC
Confidence 4556667789999999953
No 435
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=37.52 E-value=1.2e+02 Score=23.57 Aligned_cols=55 Identities=9% Similarity=-0.058 Sum_probs=29.6
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~l 76 (202)
.+..|-...|.|+++||--+=+ .......+..++..+..- .+..+|.+|..++.+
T Consensus 141 ~la~al~~~p~illlDEPt~~L--------D~~~~~~l~~~l~~~~~~-------~~~tii~~sH~~~~~ 195 (230)
T TIGR03410 141 AIARALVTRPKLLLLDEPTEGI--------QPSIIKDIGRVIRRLRAE-------GGMAILLVEQYLDFA 195 (230)
T ss_pred HHHHHHhcCCCEEEecCCcccC--------CHHHHHHHHHHHHHHHHc-------CCcEEEEEeCCHHHH
Confidence 4455566789999999953322 222233444555444321 123566677765443
No 436
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.41 E-value=48 Score=25.40 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=14.4
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 140 ~la~al~~~p~llllDEPt 158 (211)
T cd03264 140 GIAQALVGDPSILIVDEPT 158 (211)
T ss_pred HHHHHHhcCCCEEEEcCCc
Confidence 4555666789999999953
No 437
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=37.19 E-value=95 Score=24.86 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=15.8
Q ss_pred HHHHHhhhCCCeEEEEccccc
Q psy3540 6 RTNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD~ 26 (202)
-.+..|-...|.|+++||--+
T Consensus 156 v~laral~~~p~lllLDEPt~ 176 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTS 176 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcc
Confidence 345666678999999999543
No 438
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=37.19 E-value=39 Score=27.83 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.+|++||-
T Consensus 134 ~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 134 DIAASLIHQPDVLFLDEP 151 (302)
T ss_pred HHHHHHhcCCCEEEEeCC
Confidence 456666789999999994
No 439
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=37.14 E-value=53 Score=27.02 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=15.1
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.++++||--
T Consensus 143 ~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 143 GLAQALIHDPKVLILDEPT 161 (301)
T ss_pred HHHHHHhcCCCEEEEcCCc
Confidence 4666777899999999953
No 440
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=37.05 E-value=1.1e+02 Score=22.71 Aligned_cols=20 Identities=10% Similarity=0.022 Sum_probs=15.1
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 108 ~laral~~~p~~lllDEP~~ 127 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTV 127 (178)
T ss_pred HHHHHHhcCCCEEEEECCcc
Confidence 45556667999999999644
No 441
>KOG4284|consensus
Probab=36.93 E-value=70 Score=29.93 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=30.1
Q ss_pred EEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh
Q psy3540 18 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR 82 (202)
Q Consensus 18 Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r 82 (202)
++++||+|.|..... -+..++-+.+.|-.. .. ++..++.+|..||.+|-.
T Consensus 170 lfVLDEADkL~~t~s-------fq~~In~ii~slP~~-------rQ-v~a~SATYp~nLdn~Lsk 219 (980)
T KOG4284|consen 170 LFVLDEADKLMDTES-------FQDDINIIINSLPQI-------RQ-VAAFSATYPRNLDNLLSK 219 (980)
T ss_pred EEEeccHHhhhchhh-------HHHHHHHHHHhcchh-------he-eeEEeccCchhHHHHHHH
Confidence 678899999976331 122344444433322 33 455566678999987764
No 442
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=36.93 E-value=36 Score=26.75 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=14.8
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||-.+
T Consensus 146 ~la~al~~~p~llllDEP~~ 165 (240)
T PRK09493 146 AIARALAVKPKLMLFDEPTS 165 (240)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 34555567899999999654
No 443
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=36.90 E-value=84 Score=21.54 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=37.2
Q ss_pred EEEEEecCCCCCccHHHHh---cccceeeecCCCHHHHHHHHHHHhcCcc
Q psy3540 64 IMILAATNHPWDIDEAFRR---RFEKRVYIPLPNEWARYQLLTLCLEGVV 110 (202)
Q Consensus 64 v~viatTn~~~~ld~al~r---rf~~~i~i~~P~~~~R~~il~~~l~~~~ 110 (202)
.+||.++|-|..+--.|.+ =..-=++++-++..-|..||....+..+
T Consensus 3 M~Viv~~~vP~~lRG~Lt~wllEv~~GVyVg~~S~rVRd~lW~~v~~~~~ 52 (97)
T PRK11558 3 MLVVVTENVPPRLRGRLAVWLLEVRAGVYVGDVSRRIREMIWQQVTQLAE 52 (97)
T ss_pred EEEEEeccCChhHhhhhhhheEecCCCcEEcCCCHHHHHHHHHHHHHhCC
Confidence 5788888888887777777 2345688999999999999999887553
No 444
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.85 E-value=36 Score=27.67 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.++++||--
T Consensus 153 ~laral~~~P~llllDEPt 171 (282)
T PRK13640 153 AIAGILAVEPKIIILDEST 171 (282)
T ss_pred HHHHHHHcCCCEEEEECCc
Confidence 3455666799999999953
No 445
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=36.72 E-value=1.1e+02 Score=22.94 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=14.2
Q ss_pred HHHhhhCCCeEEEEccccc
Q psy3540 8 NVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~ 26 (202)
+..|-...|.|+++||--+
T Consensus 115 la~al~~~p~llllDEP~~ 133 (182)
T cd03215 115 LARWLARDPRVLILDEPTR 133 (182)
T ss_pred HHHHHccCCCEEEECCCCc
Confidence 5555567899999999543
No 446
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=36.71 E-value=39 Score=26.63 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 155 ~laral~~~p~illLDEPt~ 174 (248)
T PRK09580 155 DILQMAVLEPELCILDESDS 174 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCc
Confidence 34556667899999999633
No 447
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=36.69 E-value=58 Score=29.54 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=30.2
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeec
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIP 91 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~ 91 (202)
.|.+++|||.|+-+... ....+..++..+.. + .-||.+|..|..+ ...|+++.+.
T Consensus 462 ~~~~lilDEp~~gld~~--------~~~~~~~~l~~l~~--~-------~~vi~iTH~~~~~-----~~ad~~~~l~ 516 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGE--------TAQAIAKKLAQLSE--R-------HQVLCVTHLPQVA-----AHADAHFKVE 516 (563)
T ss_pred CCCEEEEECCCCCCCHH--------HHHHHHHHHHHHhc--C-------CEEEEEEChHHHH-----HhcCeEEEEE
Confidence 36899999998754322 12233444444422 1 2466677765433 3455555554
No 448
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=36.61 E-value=45 Score=25.71 Aligned_cols=20 Identities=20% Similarity=0.069 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||-.+
T Consensus 143 ~la~al~~~p~llllDEP~~ 162 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTS 162 (220)
T ss_pred HHHHHHhcCCCEEEECCCCC
Confidence 34555567899999999644
No 449
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=36.49 E-value=31 Score=27.75 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=14.2
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 143 ~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 143 ALARALIHRPGLLLLDEPL 161 (257)
T ss_pred HHHHHHhcCCCEEEEeCCC
Confidence 3455556789999999963
No 450
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=36.47 E-value=42 Score=21.02 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHH
Q psy3540 130 SDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA 178 (202)
Q Consensus 130 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~ 178 (202)
.-+++++++|...+-.... ..+|.+|+..|++
T Consensus 34 ~rl~~i~~~A~k~~~hakR-----------------ktlt~~DI~~Alk 65 (65)
T smart00803 34 YRIKEIVQEALKFMRHSKR-----------------TTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHHHHHHHHHhCC-----------------CeecHHHHHHHhC
Confidence 3456667777666544322 2689999988874
No 451
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=36.44 E-value=98 Score=23.80 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=13.5
Q ss_pred HHHhhhCCCeEEEEccccc
Q psy3540 8 NVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~ 26 (202)
+..|-...|.++++||--+
T Consensus 143 laral~~~p~llllDEPt~ 161 (222)
T cd03224 143 IARALMSRPKLLLLDEPSE 161 (222)
T ss_pred HHHHHhcCCCEEEECCCcc
Confidence 3444556899999999533
No 452
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=36.38 E-value=32 Score=26.49 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=14.0
Q ss_pred HHHhhhCCCeEEEEccccc
Q psy3540 8 NVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~ 26 (202)
+..|-..+|.|+++||-.+
T Consensus 139 laral~~~p~llllDEPt~ 157 (213)
T TIGR01277 139 LARCLVRPNPILLLDEPFS 157 (213)
T ss_pred HHHHHhcCCCEEEEcCCCc
Confidence 4445557899999999654
No 453
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=36.32 E-value=74 Score=27.08 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=43.0
Q ss_pred HHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh--cc--
Q psy3540 9 VPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR--RF-- 84 (202)
Q Consensus 9 ~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r--rf-- 84 (202)
+.|-...|.|+++||.=+-+. .=--..+-.+||..-+.+.+. +|+-| .++|+|++= |+
T Consensus 176 ARAla~~~~IlLMDEaFSALD-------PLIR~~mQdeLl~Lq~~l~KT-------IvFit----HDLdEAlriG~rIai 237 (386)
T COG4175 176 ARALANDPDILLMDEAFSALD-------PLIRTEMQDELLELQAKLKKT-------IVFIT----HDLDEALRIGDRIAI 237 (386)
T ss_pred HHHHccCCCEEEecCchhhcC-------hHHHHHHHHHHHHHHHHhCCe-------EEEEe----cCHHHHHhccceEEE
Confidence 344556799999999633221 111123556777776776654 33333 679999984 43
Q ss_pred ---cceeeecCCCH
Q psy3540 85 ---EKRVYIPLPNE 95 (202)
Q Consensus 85 ---~~~i~i~~P~~ 95 (202)
.+.+.++.|.+
T Consensus 238 mkdG~ivQ~Gtp~e 251 (386)
T COG4175 238 MKDGEIVQVGTPEE 251 (386)
T ss_pred ecCCeEEEeCCHHH
Confidence 57888887754
No 454
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=36.31 E-value=40 Score=27.22 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 152 ~laraL~~~p~llllDEPt~ 171 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFT 171 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCc
Confidence 34455567899999999543
No 455
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.24 E-value=37 Score=27.52 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 150 ~lAraL~~~p~llllDEPt 168 (277)
T PRK13642 150 AVAGIIALRPEIIILDEST 168 (277)
T ss_pred HHHHHHHcCCCEEEEeCCc
Confidence 4555566789999999953
No 456
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=36.17 E-value=30 Score=27.98 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=20.6
Q ss_pred HHHHHHHhhhCCCeEEEEcccccc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSL 27 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l 27 (202)
.|-.|..|....|-|+++||+=+.
T Consensus 154 aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 154 ARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHhhhhhcCCCEEEEehhhhc
Confidence 577899999999999999997443
No 457
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=36.11 E-value=36 Score=26.79 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=14.8
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 147 ~laral~~~p~llllDEPt~ 166 (241)
T PRK10895 147 EIARALAANPKFILLDEPFA 166 (241)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 45555667899999999543
No 458
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=36.06 E-value=70 Score=25.49 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=14.8
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 166 ~laral~~~p~llllDEPt~ 185 (257)
T cd03288 166 CLARAFVRKSSILIMDEATA 185 (257)
T ss_pred HHHHHHhcCCCEEEEeCCcc
Confidence 45556667899999999543
No 459
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.02 E-value=45 Score=26.44 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 159 ~laral~~~p~lllLDEP~~ 178 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCS 178 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcc
Confidence 34455566899999999543
No 460
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=35.96 E-value=72 Score=25.84 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=14.4
Q ss_pred HHHHHhhhCCCeEEEEcc
Q psy3540 6 RTNVPSNSYRVSTIFIDE 23 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDe 23 (202)
-.+..|-...|-|+++||
T Consensus 139 VaiARAL~~~P~lLLlDE 156 (248)
T COG1116 139 VAIARALATRPKLLLLDE 156 (248)
T ss_pred HHHHHHHhcCCCEEEEcC
Confidence 345666678899999998
No 461
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.92 E-value=50 Score=26.61 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 164 ~laral~~~p~lllLDEPt~ 183 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCS 183 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCc
Confidence 34455567899999999643
No 462
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=35.84 E-value=45 Score=26.81 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=14.5
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 173 ~laral~~~p~lllLDEPt~ 192 (267)
T PRK14237 173 CIARAIAVKPDILLMDEPAS 192 (267)
T ss_pred HHHHHHhcCCCEEEEeCCcc
Confidence 34555567899999999643
No 463
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=35.81 E-value=38 Score=26.40 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 123 ~laral~~~p~llilDEP~~ 142 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFT 142 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcc
Confidence 44555667899999999544
No 464
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=35.76 E-value=51 Score=25.62 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=14.2
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 151 ~la~al~~~p~llllDEPt~ 170 (227)
T cd03260 151 CLARALANEPEVLLLDEPTS 170 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCc
Confidence 34455567899999999533
No 465
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=35.76 E-value=1.7e+02 Score=22.94 Aligned_cols=11 Identities=45% Similarity=0.495 Sum_probs=9.7
Q ss_pred CCCeEEEEccc
Q psy3540 14 YRVSTIFIDEV 24 (202)
Q Consensus 14 ~~P~Ii~iDei 24 (202)
..|++|++||.
T Consensus 108 ~~~sLvLLDEp 118 (222)
T cd03285 108 TENSLIIIDEL 118 (222)
T ss_pred CCCeEEEEecC
Confidence 57999999996
No 466
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.58 E-value=35 Score=27.69 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=15.2
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 150 ~lAral~~~p~lLlLDEPt~ 169 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATS 169 (279)
T ss_pred HHHHHHHcCCCEEEEECCcc
Confidence 45566677999999999643
No 467
>PHA00520 packaging NTPase P4
Probab=35.58 E-value=30 Score=28.77 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=42.2
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH 72 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~ 72 (202)
-.+-+||++|-+-.+...-+++..++...|..-.||+-|+.+... .+.+||++-|-
T Consensus 181 ml~v~VvvvDSlr~vl~~~~GnatsGGISr~~~~~LTdl~~iaas----~gc~vV~~lNP 236 (330)
T PHA00520 181 MLDVDVVVVDSLRNVLFELGGNATSGGISRGAYGLLTDLGNIAAS----RGCRVVATLNP 236 (330)
T ss_pred HhhceEEEEechHHHHhhhccCCCCCcchHHHHHHHHHHHHHHHH----cCcEEEEEcCC
Confidence 356789999999887766555445555677888999999988876 66778887773
No 468
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=35.50 E-value=59 Score=25.43 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=14.9
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 148 ~laral~~~p~llllDEP~~ 167 (237)
T cd03252 148 AIARALIHNPRILIFDEATS 167 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcc
Confidence 35555667899999999644
No 469
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=35.34 E-value=43 Score=26.64 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 147 ~la~al~~~p~llllDEPt~ 166 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTN 166 (256)
T ss_pred HHHHHHhcCCCEEEEcCccc
Confidence 45555667899999999644
No 470
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=35.33 E-value=35 Score=28.99 Aligned_cols=19 Identities=11% Similarity=-0.069 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 144 alARAL~~~P~llLLDEP~ 162 (356)
T PRK11650 144 AMGRAIVREPAVFLFDEPL 162 (356)
T ss_pred HHHHHHhcCCCEEEEeCCc
Confidence 4555566789999999953
No 471
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.25 E-value=40 Score=27.29 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=14.9
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 147 ~laral~~~p~llllDEPt~ 166 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTS 166 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCc
Confidence 45556667899999999643
No 472
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=35.15 E-value=1.1e+02 Score=23.33 Aligned_cols=20 Identities=10% Similarity=0.018 Sum_probs=14.4
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 147 ~la~al~~~p~lllLDEPt~ 166 (214)
T TIGR02673 147 AIARAIVNSPPLLLADEPTG 166 (214)
T ss_pred HHHHHHhCCCCEEEEeCCcc
Confidence 34555567899999999643
No 473
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=35.13 E-value=96 Score=26.17 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=34.4
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCC-----cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecC
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDS-----EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATN 71 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~-----~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn 71 (202)
+-...+...+.+|+||-+-++.+...-.+ ..+...|..++++..|..+... .++.+|.+..
T Consensus 125 ~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k----~~~~vI~tNQ 190 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINK----SNTTVIFINQ 190 (325)
T ss_pred HHHHHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHh----CCCEEEEEEc
Confidence 33445667899999999999987422111 1122235555666555555443 4455555543
No 474
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=35.12 E-value=41 Score=27.71 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=13.8
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.++++||-
T Consensus 145 ~la~al~~~p~lllLDEP 162 (303)
T TIGR01288 145 TLARALINDPQLLILDEP 162 (303)
T ss_pred HHHHHHhcCCCEEEEeCC
Confidence 345556678999999995
No 475
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=35.10 E-value=45 Score=25.92 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=13.4
Q ss_pred HHHhhhCCCeEEEEcccc
Q psy3540 8 NVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD 25 (202)
+..|-...|.++++||--
T Consensus 157 la~al~~~p~llllDEPt 174 (228)
T PRK10584 157 LARAFNGRPDVLFADEPT 174 (228)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 444556689999999953
No 476
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=34.88 E-value=1.1e+02 Score=24.06 Aligned_cols=54 Identities=13% Similarity=0.017 Sum_probs=29.8
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
.+..|-...|.|+++||--+=+ .......+.+++..+.. + ..+|.+|+.++.+.
T Consensus 153 ~laral~~~p~~lllDEPt~~L--------D~~~~~~l~~~l~~~~~--~-------~tii~~sH~~~~~~ 206 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGM--------TDEETEKTAELLKSLAG--K-------HSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCC--------CHHHHHHHHHHHHHHhc--C-------CEEEEEECCHHHHH
Confidence 4555666789999999964422 12223334444444422 1 25667777655433
No 477
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=34.72 E-value=74 Score=25.48 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=27.6
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS 57 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~ 57 (202)
..+.|-...|-|++|||--+-+ ...++.++|.-|..+...
T Consensus 146 AIARALaM~P~vmLFDEPTSAL-----------DPElv~EVL~vm~~LA~e 185 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSAL-----------DPELVGEVLDVMKDLAEE 185 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccC-----------CHHHHHHHHHHHHHHHHc
Confidence 4556667789999999953322 134677788877777764
No 478
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.39 E-value=1.4e+02 Score=22.12 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=15.2
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 105 ~laral~~~p~illlDEPt~ 124 (173)
T cd03230 105 ALAQALLHDPELLILDEPTS 124 (173)
T ss_pred HHHHHHHcCCCEEEEeCCcc
Confidence 45566677999999999644
No 479
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=34.37 E-value=40 Score=26.77 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=14.5
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||-.+
T Consensus 156 ~laral~~~p~llllDEP~~ 175 (252)
T TIGR03005 156 AIARALAMRPKVMLFDEVTS 175 (252)
T ss_pred HHHHHHHcCCCEEEEeCCcc
Confidence 34455567899999999644
No 480
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=34.31 E-value=1.2e+02 Score=23.17 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=14.8
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 146 ~laral~~~p~illlDEPt~ 165 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTT 165 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCc
Confidence 34555667899999999644
No 481
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.31 E-value=73 Score=24.80 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=13.8
Q ss_pred HHHhhhCCCeEEEEccccc
Q psy3540 8 NVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~ 26 (202)
+..|-...|.++++||--+
T Consensus 149 la~al~~~p~lllLDEP~~ 167 (234)
T cd03251 149 IARALLKDPPILILDEATS 167 (234)
T ss_pred HHHHHhcCCCEEEEeCccc
Confidence 4445557899999999643
No 482
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=34.27 E-value=1.4e+02 Score=25.33 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=42.6
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH--------HHHhcccc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE--------AFRRRFEK 86 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~--------al~rrf~~ 86 (202)
.|..+++||+-.+..-. .+..++..+ .+ .++.++..+.....|.. .++.-+..
T Consensus 263 ~~~~~~lDEf~~l~~i~-----------~l~~~~~~~---r~-----~gi~~~~~~Q~~~Ql~~~Yg~~~a~~i~~n~~~ 323 (384)
T cd01126 263 YRVLFLLDEFPLLGKLE-----------TFEKAIAIM---AG-----YGIRLLLIFQSLAQLEGTYGDAGASSFLSNCGV 323 (384)
T ss_pred cceEEEEcccccccchH-----------HHHHHHHHh---cC-----CCCEEEEEEEcHHHHHHHhCHhHHHHHHhhCce
Confidence 48999999998875311 123333333 32 45666667666655542 23335567
Q ss_pred eeeecCCCHHHHHHHHHHHhcC
Q psy3540 87 RVYIPLPNEWARYQLLTLCLEG 108 (202)
Q Consensus 87 ~i~i~~P~~~~R~~il~~~l~~ 108 (202)
++.+...|.+.. +.+...+++
T Consensus 324 ~~~~~~~d~~ta-~~iS~~lG~ 344 (384)
T cd01126 324 RLFFAVNDYETA-RYISKLLGT 344 (384)
T ss_pred EEEecCCCHHHH-HHHHHHcCC
Confidence 777776666654 444555544
No 483
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=34.19 E-value=49 Score=26.17 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=13.7
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 161 ~la~al~~~p~llllDEP 178 (252)
T CHL00131 161 EILQMALLDSELAILDET 178 (252)
T ss_pred HHHHHHHcCCCEEEEcCC
Confidence 345555678999999995
No 484
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.10 E-value=33 Score=27.91 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=15.1
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 151 ~laraL~~~p~lLilDEPt~ 170 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTA 170 (283)
T ss_pred HHHHHHHcCCCEEEEeCCcc
Confidence 45566667999999999644
No 485
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=33.93 E-value=1.5e+02 Score=22.55 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=10.8
Q ss_pred CCCeEEEEccccc
Q psy3540 14 YRVSTIFIDEVDS 26 (202)
Q Consensus 14 ~~P~Ii~iDeiD~ 26 (202)
..|.++++||.-.
T Consensus 107 ~~p~llllDEp~~ 119 (200)
T cd03280 107 DPDSLVLLDELGS 119 (200)
T ss_pred CCCcEEEEcCCCC
Confidence 5799999999754
No 486
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.86 E-value=42 Score=27.19 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=15.2
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-..+|.++++||--+
T Consensus 148 ~laraL~~~p~llllDEPt~ 167 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMA 167 (274)
T ss_pred HHHHHHHcCCCEEEEECCCc
Confidence 45566677999999999543
No 487
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.83 E-value=1e+02 Score=25.10 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=14.5
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.||++||--+
T Consensus 154 aiA~aL~~~p~illLDEPt~ 173 (288)
T PRK13643 154 AIAGILAMEPEVLVLDEPTA 173 (288)
T ss_pred HHHHHHHhCCCEEEEECCcc
Confidence 34555567899999999643
No 488
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=33.82 E-value=47 Score=25.32 Aligned_cols=33 Identities=12% Similarity=0.426 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCC
Q psy3540 170 EKDFREAIARCRKSVTAHDLSKYDSWMNEFGSH 202 (202)
Q Consensus 170 ~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~~ 202 (202)
..+|..++....+......-..|.++.+.||.|
T Consensus 46 ~~~F~~~l~~L~~~~~~~~~~~y~~f~~~yGTH 78 (212)
T PF01823_consen 46 TPEFLSDLNALPAEYNSDNTDEYYRFFDKYGTH 78 (212)
T ss_dssp GHHHHHHHHTSHSS--HHHHHHHHHHHHHH-SE
T ss_pred CHHHHHHHHhhCcccCccchHHHHHHHHHhCcE
Confidence 489999999998877777766699999999986
No 489
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=33.80 E-value=42 Score=26.00 Aligned_cols=20 Identities=10% Similarity=0.066 Sum_probs=14.4
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 159 ~laral~~~p~llllDEPt~ 178 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTA 178 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcc
Confidence 34555567899999999533
No 490
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=33.72 E-value=38 Score=27.04 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=14.8
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 125 ~iaraL~~~p~llllDEPt~ 144 (246)
T cd03237 125 AIAACLSKDADIYLLDEPSA 144 (246)
T ss_pred HHHHHHhcCCCEEEEeCCcc
Confidence 35556667899999999644
No 491
>PF12703 plasmid_Toxin: Toxin of toxin-antitoxin type 1 system; InterPro: IPR024640 This family is the toxin of a type 1 toxin-antitoxin system which is found in a relatively widespread range of bacterial species. The species distribution suggests frequent horizontal gene transfer. In a type 1 system, as characterised for the plasmid-encoded E coli hok/sok system, the toxin-encoding stable mRNA encodes a protein which rapidly leads to cell death unless the translation is suppressed by a short-lived small RNA. The plasmid-encoded module prevents the growth of plasmid-free offspring, thus ensuring the persistence of the plasmid in the population. Plasmid-free cells arising after cell-division will be killed because the stable mRNA toxin is present while the comparably unstable anti-toxin is rapidly degraded. Where the system is transcribed chromosomally, the mechanism is poorly understood [].
Probab=33.63 E-value=1.3e+02 Score=19.22 Aligned_cols=16 Identities=44% Similarity=0.731 Sum_probs=13.5
Q ss_pred CCcHHHHHHHHHHhCC
Q psy3540 167 PVTEKDFREAIARCRK 182 (202)
Q Consensus 167 ~it~~df~~Al~~~~P 182 (202)
.-|++||.+|+..++-
T Consensus 56 rAT~~DF~eAm~~Irq 71 (74)
T PF12703_consen 56 RATQEDFREAMSAIRQ 71 (74)
T ss_pred cCcHHHHHHHHHHHHH
Confidence 4789999999998764
No 492
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=33.42 E-value=78 Score=26.38 Aligned_cols=62 Identities=16% Similarity=0.050 Sum_probs=35.2
Q ss_pred HHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh
Q psy3540 6 RTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR 82 (202)
Q Consensus 6 ~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r 82 (202)
.-...|--+.|-|+|+||--.=+ .-..+.-+-.|+++...-. ..-|+.||..-+.|-.-..|
T Consensus 165 aeLaaaLLh~p~VLfLDEpTvgL--------DV~aq~~ir~Flke~n~~~-------~aTVllTTH~~~di~~lc~r 226 (325)
T COG4586 165 AELAAALLHPPKVLFLDEPTVGL--------DVNAQANIREFLKEYNEER-------QATVLLTTHIFDDIATLCDR 226 (325)
T ss_pred HHHHHHhcCCCcEEEecCCccCc--------chhHHHHHHHHHHHHHHhh-------CceEEEEecchhhHHHhhhh
Confidence 33455567899999999942111 1111222445555554433 34788898887776554443
No 493
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=33.41 E-value=37 Score=28.72 Aligned_cols=20 Identities=10% Similarity=-0.079 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 141 alAraL~~~p~lllLDEPts 160 (354)
T TIGR02142 141 AIGRALLSSPRLLLMDEPLA 160 (354)
T ss_pred HHHHHHHcCCCEEEEcCCCc
Confidence 45555667899999999533
No 494
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=33.36 E-value=46 Score=25.25 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=13.8
Q ss_pred HHHhhhCCCeEEEEccccc
Q psy3540 8 NVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~ 26 (202)
+..|-...|.++++||--+
T Consensus 82 laral~~~p~lllLDEPts 100 (177)
T cd03222 82 IAAALLRNATFYLFDEPSA 100 (177)
T ss_pred HHHHHhcCCCEEEEECCcc
Confidence 4445566899999999643
No 495
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=33.33 E-value=2e+02 Score=21.38 Aligned_cols=43 Identities=12% Similarity=0.285 Sum_probs=32.4
Q ss_pred ceEEEEEecCCCCCccHHHHhcccceeeecC---CCHHHHHHHHHHHhc
Q psy3540 62 KIIMILAATNHPWDIDEAFRRRFEKRVYIPL---PNEWARYQLLTLCLE 107 (202)
Q Consensus 62 ~~v~viatTn~~~~ld~al~rrf~~~i~i~~---P~~~~R~~il~~~l~ 107 (202)
.-++|||- |+-++++++.|.+..+.+.. |-+-.|.-++++..+
T Consensus 99 ~i~F~IGG---a~G~~~~v~~~a~~~lSLS~mTfpH~larlvL~EQlYR 144 (157)
T PRK00103 99 DVAFVIGG---ADGLSPAVKKRADQSLSLSKLTLPHQLVRVLLAEQLYR 144 (157)
T ss_pred cEEEEEcC---ccccCHHHHHhcCceEEeccCCCcHHHHHHHHHHHHHH
Confidence 45788887 57899999999998888765 556677777666553
No 496
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=33.27 E-value=1.6e+02 Score=22.86 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=14.1
Q ss_pred HHHhhhCCCeEEEEccccc
Q psy3540 8 NVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~ 26 (202)
+..|-...|.|+++||--+
T Consensus 154 laral~~~p~illlDEP~~ 172 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTS 172 (226)
T ss_pred HHHHHHhCCCEEEEeCCCc
Confidence 4555567899999999543
No 497
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=33.20 E-value=1.2e+02 Score=23.49 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.++++||--+
T Consensus 143 ~la~al~~~p~llllDEPt~ 162 (232)
T cd03218 143 EIARALATNPKFLLLDEPFA 162 (232)
T ss_pred HHHHHHhcCCCEEEecCCcc
Confidence 45556667899999999533
No 498
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=33.17 E-value=2.6e+02 Score=22.47 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=59.3
Q ss_pred eeecCCCHHHHHHHHHHHhcCccc---------CCcccH---HHH--HHHccCCCHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy3540 88 VYIPLPNEWARYQLLTLCLEGVVI---------DVNLDF---HKI--SKMLEGYTGSDIANLARDAAMMSIRRKIMGQTP 153 (202)
Q Consensus 88 i~i~~P~~~~R~~il~~~l~~~~~---------~~~~~~---~~l--a~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~ 153 (202)
..+++|+.++-.+.+..|++.... .+++.+ .+| .-+..++|-.+++..+......-.+|...|..
T Consensus 116 ~~lGLP~~del~~~~~~y~~~rg~y~~~e~f~w~s~v~YwlvtdLy~~~r~~~lt~~eLrk~a~~~L~~makRi~sGE~- 194 (233)
T PF06992_consen 116 EALGLPSVDELYQRYKRYCRYRGFYPSIEEFPWRSNVEYWLVTDLYRRMRQRQLTDEELRKRAKKELKAMAKRIASGEP- 194 (233)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhCCCCChhhCCCcchhHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHCCCc-
Confidence 367999999999988888853222 122221 112 23447899999999888887776677655432
Q ss_pred hHHhhhhhccCCCCCcHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHhC
Q psy3540 154 AQIKEIKQEDIDLPVTEKDFREAIAR--CRKSVTAHDLSKYDSWMNEFG 200 (202)
Q Consensus 154 ~~~~~~~~~~~~~~it~~df~~Al~~--~~Ps~s~~~~~~~~~~~~~~~ 200 (202)
|- .-..+|-. .+|.-....+..+-+.+.+||
T Consensus 195 --------------IP--ePv~qLp~~~~~P~s~e~~l~~iA~lr~k~g 227 (233)
T PF06992_consen 195 --------------IP--EPVKQLPKLHSIPVSREKALEIIAELRAKFG 227 (233)
T ss_pred --------------CC--cHHHHhhhhcCCCCCHHHHHHHHHHHHHHhC
Confidence 11 11122221 356655667777888888887
No 499
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.15 E-value=1.4e+02 Score=19.49 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=14.9
Q ss_pred HHHHHHHhhhCCCeEEEEc
Q psy3540 4 VQRTNVPSNSYRVSTIFID 22 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iD 22 (202)
..++....+...|.++++|
T Consensus 32 ~~~~~~~~~~~~~d~iiid 50 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIID 50 (112)
T ss_dssp HHHHHHHHHHSTESEEEEE
T ss_pred HHHHHHHhcccCceEEEEE
Confidence 3556677788889999998
No 500
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.05 E-value=61 Score=26.04 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=15.0
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 152 ~laral~~~p~lllLDEPt~ 171 (269)
T PRK13648 152 AIAGVLALNPSVIILDEATS 171 (269)
T ss_pred HHHHHHHcCCCEEEEeCCcc
Confidence 35556667899999999654
Done!