Query psy3540
Match_columns 202
No_of_seqs 231 out of 1606
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 19:18:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 4.9E-43 1.7E-47 317.9 4.5 196 2-201 557-764 (806)
2 4b4t_J 26S protease regulatory 100.0 1.6E-40 5.3E-45 280.7 16.9 173 2-195 228-404 (405)
3 4b4t_I 26S protease regulatory 100.0 1.4E-39 4.7E-44 276.0 11.0 167 2-189 262-432 (437)
4 4b4t_H 26S protease regulatory 100.0 2.7E-38 9.2E-43 270.3 17.6 174 2-196 289-467 (467)
5 4b4t_L 26S protease subunit RP 100.0 2.2E-38 7.5E-43 271.0 16.2 167 2-189 261-431 (437)
6 4b4t_M 26S protease regulatory 100.0 1.9E-38 6.6E-43 271.1 15.3 164 2-186 261-428 (434)
7 4b4t_K 26S protease regulatory 100.0 8E-38 2.7E-42 267.1 14.5 167 2-189 252-424 (428)
8 1xwi_A SKD1 protein; VPS4B, AA 100.0 2E-35 6.8E-40 245.1 23.0 196 2-201 92-320 (322)
9 2qp9_X Vacuolar protein sortin 100.0 7.6E-34 2.6E-38 238.5 21.9 196 2-201 130-352 (355)
10 3eie_A Vacuolar protein sortin 100.0 8.7E-34 3E-38 235.0 18.9 196 2-201 97-319 (322)
11 2zan_A Vacuolar protein sortin 100.0 1.3E-33 4.3E-38 243.5 16.8 196 2-201 214-442 (444)
12 3cf2_A TER ATPase, transitiona 100.0 1E-34 3.5E-39 263.5 10.2 193 2-199 284-489 (806)
13 3cf0_A Transitional endoplasmi 100.0 7.8E-33 2.7E-37 227.4 17.4 195 2-200 95-301 (301)
14 2x8a_A Nuclear valosin-contain 100.0 8.7E-31 3E-35 212.7 16.3 177 2-189 90-273 (274)
15 3d8b_A Fidgetin-like protein 1 100.0 2.1E-29 7.2E-34 211.5 17.2 192 2-201 163-355 (357)
16 3b9p_A CG5977-PA, isoform A; A 100.0 1.2E-28 4.1E-33 201.3 14.9 194 2-202 100-294 (297)
17 3vfd_A Spastin; ATPase, microt 100.0 2.2E-27 7.5E-32 201.2 17.6 193 2-202 194-387 (389)
18 3hu3_A Transitional endoplasmi 100.0 8.7E-28 3E-32 209.0 13.7 187 2-193 284-483 (489)
19 1ypw_A Transitional endoplasmi 99.9 3.9E-31 1.3E-35 242.2 -8.1 195 2-200 557-763 (806)
20 2ce7_A Cell division protein F 99.9 8.2E-27 2.8E-31 201.8 15.8 161 2-183 95-259 (476)
21 3h4m_A Proteasome-activating n 99.9 4.3E-26 1.5E-30 185.0 17.8 180 2-202 97-282 (285)
22 1lv7_A FTSH; alpha/beta domain 99.9 3E-25 1E-29 177.8 18.0 161 2-183 91-255 (257)
23 2dhr_A FTSH; AAA+ protein, hex 99.9 2.7E-25 9.4E-30 193.3 11.9 161 2-183 110-274 (499)
24 1ixz_A ATP-dependent metallopr 99.9 1.5E-24 5.3E-29 173.4 14.9 155 2-177 95-253 (254)
25 1iy2_A ATP-dependent metallopr 99.9 2.5E-23 8.6E-28 168.6 17.0 155 2-177 119-277 (278)
26 2qz4_A Paraplegin; AAA+, SPG7, 99.9 3E-24 1E-28 171.7 9.3 161 2-183 85-252 (262)
27 2r62_A Cell division protease 99.9 7.9E-25 2.7E-29 176.1 -2.9 164 3-186 91-259 (268)
28 1ypw_A Transitional endoplasmi 99.8 7E-20 2.4E-24 167.8 16.2 178 2-184 284-463 (806)
29 3vlf_B 26S protease regulatory 99.8 6.9E-19 2.4E-23 118.9 7.7 86 94-196 2-88 (88)
30 3aji_B S6C, proteasome (prosom 99.8 4.7E-19 1.6E-23 118.4 5.6 82 94-193 2-83 (83)
31 3t15_A Ribulose bisphosphate c 99.8 2.8E-18 9.7E-23 140.1 10.3 127 2-134 82-222 (293)
32 2krk_A 26S protease regulatory 99.7 2.8E-18 9.7E-23 115.2 7.2 78 89-183 7-84 (86)
33 3kw6_A 26S protease regulatory 99.7 4.5E-18 1.5E-22 112.3 7.6 76 91-183 1-76 (78)
34 2dzn_B 26S protease regulatory 99.6 2.6E-17 9.1E-22 109.6 1.8 80 96-192 1-81 (82)
35 2c9o_A RUVB-like 1; hexameric 99.4 1.9E-16 6.5E-21 136.7 -11.2 125 3-138 111-262 (456)
36 3uk6_A RUVB-like 2; hexameric 99.4 2.3E-12 7.9E-17 107.4 13.0 143 3-181 168-331 (368)
37 3syl_A Protein CBBX; photosynt 99.4 1.6E-12 5.6E-17 105.9 11.2 135 3-149 121-268 (309)
38 1d2n_A N-ethylmaleimide-sensit 99.4 4.1E-13 1.4E-17 107.9 6.7 152 2-183 111-267 (272)
39 1ofh_A ATP-dependent HSL prote 99.3 3E-11 1E-15 98.0 11.9 167 4-181 100-300 (310)
40 3m6a_A ATP-dependent protease 99.2 1.1E-11 3.6E-16 109.2 8.0 158 3-181 164-342 (543)
41 3pfi_A Holliday junction ATP-d 99.2 3.2E-10 1.1E-14 93.5 14.2 139 14-182 105-256 (338)
42 2v1u_A Cell division control p 99.2 5.9E-10 2E-14 92.8 13.7 146 5-180 119-276 (387)
43 2z4s_A Chromosomal replication 99.2 2.6E-10 8.9E-15 97.9 11.7 134 15-182 194-334 (440)
44 1r6b_X CLPA protein; AAA+, N-t 99.1 3.3E-10 1.1E-14 103.1 12.5 172 2-198 265-455 (758)
45 1njg_A DNA polymerase III subu 99.1 4.6E-10 1.6E-14 86.9 11.5 133 4-177 111-248 (250)
46 1hqc_A RUVB; extended AAA-ATPa 99.1 3.9E-10 1.3E-14 92.2 11.4 117 14-143 89-218 (324)
47 3bos_A Putative DNA replicatio 99.1 3.8E-10 1.3E-14 87.9 9.5 132 14-178 103-241 (242)
48 2chg_A Replication factor C sm 99.1 8.3E-10 2.8E-14 84.5 11.3 123 14-178 101-224 (226)
49 1fnn_A CDC6P, cell division co 99.0 1.2E-08 4.2E-13 85.0 14.9 141 14-185 124-279 (389)
50 1g8p_A Magnesium-chelatase 38 99.0 1.7E-08 5.7E-13 83.2 14.3 137 15-181 144-323 (350)
51 2r44_A Uncharacterized protein 98.9 1.1E-08 3.9E-13 84.0 12.9 136 17-181 111-298 (331)
52 2qby_A CDC6 homolog 1, cell di 98.9 1.6E-08 5.6E-13 83.9 13.6 126 5-145 117-254 (386)
53 3hws_A ATP-dependent CLP prote 98.9 2.4E-09 8.2E-14 89.4 7.9 146 3-148 100-327 (363)
54 2qby_B CDC6 homolog 3, cell di 98.9 2.6E-08 9E-13 83.0 13.3 139 4-181 123-271 (384)
55 3pvs_A Replication-associated 98.9 5E-09 1.7E-13 90.0 9.1 146 2-184 89-248 (447)
56 4fcw_A Chaperone protein CLPB; 98.9 9.1E-09 3.1E-13 83.5 10.0 125 12-148 116-283 (311)
57 1l8q_A Chromosomal replication 98.9 1.7E-08 5.7E-13 82.8 11.5 111 15-142 98-214 (324)
58 3pxg_A Negative regulator of g 98.8 2.2E-08 7.6E-13 86.5 10.4 118 2-144 254-386 (468)
59 1in4_A RUVB, holliday junction 98.8 3.7E-07 1.3E-11 75.3 16.1 137 15-181 102-251 (334)
60 1jr3_A DNA polymerase III subu 98.8 1.3E-07 4.3E-12 78.5 13.2 119 3-141 103-226 (373)
61 1qvr_A CLPB protein; coiled co 98.8 1.5E-08 5.1E-13 93.5 8.0 129 3-144 250-393 (854)
62 1jbk_A CLPB protein; beta barr 98.7 6.8E-09 2.3E-13 77.5 4.5 87 3-102 102-194 (195)
63 1g41_A Heat shock protein HSLU 98.7 7.8E-10 2.7E-14 94.7 -1.0 87 2-102 98-188 (444)
64 3pxi_A Negative regulator of g 98.7 3.8E-08 1.3E-12 89.6 10.0 120 2-146 254-388 (758)
65 3f9v_A Minichromosome maintena 98.7 9.6E-09 3.3E-13 91.2 5.5 138 16-183 392-590 (595)
66 2c9o_A RUVB-like 1; hexameric 98.7 1.1E-07 3.8E-12 81.8 11.8 145 16-199 296-454 (456)
67 1sxj_D Activator 1 41 kDa subu 98.7 3.2E-07 1.1E-11 75.5 13.0 108 15-142 133-241 (353)
68 1sxj_B Activator 1 37 kDa subu 98.7 3.4E-07 1.2E-11 74.3 12.6 106 15-140 107-213 (323)
69 3te6_A Regulatory protein SIR3 98.6 1.7E-07 5.7E-12 77.1 10.3 90 2-108 117-213 (318)
70 3pxi_A Negative regulator of g 98.6 1.3E-07 4.5E-12 86.1 9.9 128 9-148 573-729 (758)
71 1iqp_A RFCS; clamp loader, ext 98.6 8.5E-07 2.9E-11 72.0 13.4 107 14-140 109-216 (327)
72 1r6b_X CLPA protein; AAA+, N-t 98.6 3E-07 1E-11 83.6 11.5 129 8-148 550-720 (758)
73 2chq_A Replication factor C sm 98.6 1.2E-06 4E-11 70.9 13.5 107 14-140 101-208 (319)
74 3nbx_X ATPase RAVA; AAA+ ATPas 98.5 2.8E-07 9.5E-12 80.2 9.4 121 15-148 109-271 (500)
75 3u61_B DNA polymerase accessor 98.5 4.5E-07 1.5E-11 74.1 9.7 106 15-139 105-219 (324)
76 2p65_A Hypothetical protein PF 98.5 1.6E-07 5.3E-12 69.9 6.0 79 3-94 102-187 (187)
77 1g41_A Heat shock protein HSLU 98.5 2.9E-06 1E-10 72.6 14.5 163 17-193 252-443 (444)
78 1sxj_E Activator 1 40 kDa subu 98.5 1.1E-06 3.7E-11 72.5 10.7 107 15-141 134-242 (354)
79 1sxj_A Activator 1 95 kDa subu 98.4 1.4E-06 4.7E-11 76.1 10.5 104 13-138 146-251 (516)
80 1um8_A ATP-dependent CLP prote 98.4 2.2E-06 7.5E-11 71.6 10.4 165 4-179 122-364 (376)
81 1w5s_A Origin recognition comp 98.4 4.5E-06 1.5E-10 69.9 12.0 124 14-145 137-275 (412)
82 1qvr_A CLPB protein; coiled co 98.4 2.2E-06 7.5E-11 79.1 10.9 128 9-148 654-824 (854)
83 1a5t_A Delta prime, HOLB; zinc 98.3 4E-06 1.4E-10 69.1 11.2 111 3-137 92-206 (334)
84 3k1j_A LON protease, ATP-depen 98.1 1.1E-05 3.7E-10 71.7 8.6 136 15-179 201-374 (604)
85 1ojl_A Transcriptional regulat 97.8 4.2E-05 1.4E-09 62.2 7.7 115 16-143 97-235 (304)
86 2gno_A DNA polymerase III, gam 97.8 6.5E-05 2.2E-09 61.2 8.3 83 3-106 66-152 (305)
87 4akg_A Glutathione S-transfera 97.8 4E-05 1.4E-09 77.7 8.1 89 15-108 1336-1433(2695)
88 1sxj_C Activator 1 40 kDa subu 97.8 0.00011 3.9E-09 60.3 9.2 92 15-126 110-203 (340)
89 3cmw_A Protein RECA, recombina 97.7 2.3E-05 7.9E-10 76.5 4.3 66 2-72 1147-1217(1706)
90 2bjv_A PSP operon transcriptio 97.6 0.00025 8.6E-09 56.0 8.7 116 15-143 100-240 (265)
91 2r2a_A Uncharacterized protein 97.2 0.00053 1.8E-08 52.4 6.0 73 14-98 86-158 (199)
92 3f8t_A Predicted ATPase involv 97.0 0.0082 2.8E-07 51.7 11.7 136 17-182 302-485 (506)
93 1jr3_D DNA polymerase III, del 96.8 0.023 7.8E-07 46.4 12.3 118 4-140 61-189 (343)
94 2fna_A Conserved hypothetical 96.4 0.028 9.6E-07 45.4 10.3 117 4-137 124-251 (357)
95 3n70_A Transport activator; si 96.1 0.007 2.4E-07 43.2 4.7 67 5-92 69-143 (145)
96 2qen_A Walker-type ATPase; unk 96.1 0.041 1.4E-06 44.3 9.8 110 15-137 128-247 (350)
97 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.0034 1.2E-07 51.4 2.2 71 4-81 173-243 (331)
98 3co5_A Putative two-component 95.1 0.038 1.3E-06 39.2 5.4 68 5-92 68-141 (143)
99 1ny5_A Transcriptional regulat 94.1 0.17 5.8E-06 42.2 7.9 115 16-143 232-370 (387)
100 2kjq_A DNAA-related protein; s 93.9 0.041 1.4E-06 39.6 3.2 63 15-92 83-147 (149)
101 3cmu_A Protein RECA, recombina 93.7 0.05 1.7E-06 54.3 4.4 66 2-72 1492-1562(2050)
102 4akg_A Glutathione S-transfera 93.2 3.1 0.0001 43.1 16.2 129 3-142 686-839 (2695)
103 3vkg_A Dynein heavy chain, cyt 91.9 0.35 1.2E-05 50.4 7.7 85 16-107 1375-1470(3245)
104 3dzd_A Transcriptional regulat 91.1 0.32 1.1E-05 40.2 5.5 113 16-141 223-359 (368)
105 2iut_A DNA translocase FTSK; n 90.3 0.84 2.9E-05 40.1 7.5 74 17-103 345-420 (574)
106 4ag6_A VIRB4 ATPase, type IV s 89.9 1.9 6.5E-05 35.5 9.2 74 14-101 261-342 (392)
107 3ec2_A DNA replication protein 87.6 0.71 2.4E-05 33.5 4.6 14 14-27 99-112 (180)
108 1svm_A Large T antigen; AAA+ f 86.1 0.28 9.6E-06 40.8 1.8 71 10-92 211-284 (377)
109 2ius_A DNA translocase FTSK; n 85.7 1.5 5E-05 38.0 6.2 77 15-104 296-375 (512)
110 1ye8_A Protein THEP1, hypothet 81.8 10 0.00035 27.5 8.7 66 12-94 96-164 (178)
111 3cmu_A Protein RECA, recombina 79.6 2.2 7.6E-05 42.9 5.4 65 3-71 794-867 (2050)
112 1z6t_A APAF-1, apoptotic prote 75.4 12 0.00041 32.3 8.5 83 15-128 236-321 (591)
113 1e9r_A Conjugal transfer prote 70.7 16 0.00054 30.3 7.8 75 14-108 278-362 (437)
114 1n0w_A DNA repair protein RAD5 68.0 5.2 0.00018 29.9 3.9 26 5-30 109-134 (243)
115 2cvh_A DNA repair and recombin 67.1 5 0.00017 29.5 3.6 16 15-30 105-120 (220)
116 2ehv_A Hypothetical protein PH 63.3 11 0.00036 28.3 4.9 74 7-91 127-206 (251)
117 3sfz_A APAF-1, apoptotic pepti 63.2 35 0.0012 31.9 9.3 85 15-128 236-321 (1249)
118 2w0m_A SSO2452; RECA, SSPF, un 61.9 6.1 0.00021 29.2 3.3 23 7-29 113-137 (235)
119 1xp8_A RECA protein, recombina 61.6 14 0.00048 30.3 5.6 46 11-56 148-198 (366)
120 4a74_A DNA repair and recombin 56.7 8.1 0.00028 28.5 3.1 76 13-93 123-200 (231)
121 3lda_A DNA repair protein RAD5 55.7 11 0.00036 31.5 4.0 64 5-72 263-327 (400)
122 2zu0_C Probable ATP-dependent 53.7 19 0.00065 27.9 4.9 54 7-76 174-227 (267)
123 2zr9_A Protein RECA, recombina 53.6 6.9 0.00024 31.9 2.4 21 9-29 133-153 (349)
124 1cr0_A DNA primase/helicase; R 53.6 26 0.00088 27.2 5.8 21 9-29 141-161 (296)
125 3eod_A Protein HNR; response r 52.3 38 0.0013 21.9 5.8 20 4-23 40-59 (130)
126 2z43_A DNA repair and recombin 50.8 8.5 0.00029 30.8 2.5 26 5-30 192-218 (324)
127 2d2e_A SUFC protein; ABC-ATPas 50.0 18 0.00061 27.7 4.2 20 7-26 153-172 (250)
128 1tue_A Replication protein E1; 49.5 36 0.0012 25.8 5.6 64 16-91 104-177 (212)
129 1q0u_A Bstdead; DEAD protein, 49.0 24 0.00083 25.9 4.7 15 15-29 150-164 (219)
130 3mjd_A Orotate phosphoribosylt 48.5 19 0.00065 27.6 4.1 32 167-201 201-232 (232)
131 3gfo_A Cobalt import ATP-bindi 47.9 12 0.00043 29.3 3.0 18 7-24 153-170 (275)
132 2ixe_A Antigen peptide transpo 46.9 16 0.00055 28.5 3.5 19 7-25 166-184 (271)
133 3auy_A DNA double-strand break 46.7 28 0.00094 28.3 5.1 19 10-28 299-318 (371)
134 2w58_A DNAI, primosome compone 45.1 13 0.00046 26.9 2.7 14 15-28 115-128 (202)
135 3hr8_A Protein RECA; alpha and 43.8 38 0.0013 27.6 5.4 47 11-57 135-186 (356)
136 3tif_A Uncharacterized ABC tra 43.3 9.3 0.00032 29.1 1.6 18 7-24 155-172 (235)
137 2oxc_A Probable ATP-dependent 42.7 28 0.00095 25.8 4.2 14 16-29 167-180 (230)
138 3kta_B Chromosome segregation 42.4 45 0.0015 24.0 5.1 15 14-28 85-99 (173)
139 1vc3_B L-aspartate-alpha-decar 42.1 14 0.00048 24.3 2.0 20 9-28 72-91 (96)
140 1uhe_A Aspartate 1-decarboxyla 41.9 16 0.00053 24.1 2.2 21 9-29 70-90 (97)
141 2nq2_C Hypothetical ABC transp 40.7 13 0.00045 28.6 2.1 18 7-24 138-155 (253)
142 1taf_B TFIID TBP associated fa 40.5 22 0.00074 21.9 2.6 12 167-178 58-69 (70)
143 2i1q_A DNA repair and recombin 40.5 12 0.00042 29.6 1.9 25 6-30 194-219 (322)
144 3fe2_A Probable ATP-dependent 40.4 24 0.00082 26.4 3.5 15 15-29 176-190 (242)
145 4g1u_C Hemin import ATP-bindin 39.7 11 0.00036 29.4 1.4 10 15-24 165-174 (266)
146 3plx_B Aspartate 1-decarboxyla 39.4 18 0.00061 24.0 2.2 22 9-30 71-92 (102)
147 1vec_A ATP-dependent RNA helic 39.0 30 0.001 24.9 3.8 15 15-29 146-160 (206)
148 2yz2_A Putative ABC transporte 39.0 1.1E+02 0.0038 23.4 7.3 19 7-25 148-166 (266)
149 3dkp_A Probable ATP-dependent 38.6 31 0.001 25.7 3.9 14 16-29 176-189 (245)
150 3cz5_A Two-component response 37.9 88 0.003 20.8 6.1 20 4-23 40-59 (153)
151 1qde_A EIF4A, translation init 37.8 23 0.00079 26.0 3.0 14 16-29 156-169 (224)
152 1v5w_A DMC1, meiotic recombina 37.7 18 0.00062 29.1 2.5 24 7-30 209-234 (343)
153 4e7p_A Response regulator; DNA 37.6 81 0.0028 21.0 5.8 85 4-108 55-140 (150)
154 1g6h_A High-affinity branched- 37.6 1.2E+02 0.0042 23.0 7.3 18 7-24 163-180 (257)
155 2a5y_B CED-4; apoptosis; HET: 36.0 97 0.0033 26.4 7.1 62 65-128 267-330 (549)
156 1to0_A Hypothetical UPF0247 pr 36.0 1.2E+02 0.004 21.9 6.4 43 62-107 102-147 (167)
157 1b67_A Protein (histone HMFA); 35.6 23 0.0008 21.2 2.2 33 132-181 36-68 (68)
158 3iuy_A Probable ATP-dependent 35.2 30 0.001 25.5 3.3 14 16-29 168-181 (228)
159 1e69_A Chromosome segregation 35.2 59 0.002 25.6 5.2 15 14-28 240-254 (322)
160 1t6n_A Probable ATP-dependent 34.6 97 0.0033 22.4 6.1 15 15-29 158-172 (220)
161 3io5_A Recombination and repai 34.5 32 0.0011 27.9 3.4 19 12-30 108-126 (333)
162 1w1w_A Structural maintenance 34.3 57 0.0019 26.9 5.2 15 14-28 354-368 (430)
163 1q57_A DNA primase/helicase; d 33.8 1E+02 0.0035 25.9 6.8 19 12-30 351-369 (503)
164 2ff7_A Alpha-hemolysin translo 33.7 1.3E+02 0.0043 22.8 6.8 19 7-25 155-173 (247)
165 3ubt_Y Modification methylase 32.3 1.2E+02 0.004 23.8 6.6 28 4-31 91-118 (331)
166 4aby_A DNA repair protein RECN 32.3 2E+02 0.0067 23.2 8.1 16 13-28 311-328 (415)
167 1vpl_A ABC transporter, ATP-bi 32.0 44 0.0015 25.7 3.9 18 7-24 156-173 (256)
168 1pzn_A RAD51, DNA repair and r 31.7 35 0.0012 27.5 3.4 17 14-30 230-246 (349)
169 1f2t_B RAD50 ABC-ATPase; DNA d 31.7 1E+02 0.0034 21.4 5.4 15 10-24 76-90 (148)
170 1id3_B Histone H4; nucleosome 31.4 39 0.0013 22.3 2.9 44 116-180 50-93 (102)
171 2ghi_A Transport protein; mult 31.0 1.2E+02 0.004 23.2 6.2 19 7-25 165-183 (260)
172 2cbz_A Multidrug resistance-as 30.8 91 0.0031 23.4 5.4 18 7-24 137-154 (237)
173 2gxq_A Heat resistant RNA depe 30.5 41 0.0014 24.1 3.3 15 15-29 144-158 (207)
174 2pl3_A Probable ATP-dependent 30.3 58 0.002 24.0 4.2 15 15-29 171-185 (236)
175 1sgw_A Putative ABC transporte 30.2 37 0.0013 25.4 3.0 20 7-26 143-162 (214)
176 2dr3_A UPF0273 protein PH0284; 30.0 1.5E+02 0.005 21.6 6.5 41 7-52 120-160 (247)
177 4fak_A Ribosomal RNA large sub 29.9 1.5E+02 0.005 21.3 6.0 42 62-106 106-150 (163)
178 3tui_C Methionine import ATP-b 29.9 32 0.0011 28.2 2.8 18 7-24 173-190 (366)
179 2pjz_A Hypothetical protein ST 29.8 84 0.0029 24.2 5.1 18 7-24 138-155 (263)
180 3bor_A Human initiation factor 28.8 38 0.0013 25.2 2.9 14 16-29 174-187 (237)
181 2qgz_A Helicase loader, putati 28.4 47 0.0016 26.2 3.5 14 15-28 214-227 (308)
182 3b85_A Phosphate starvation-in 28.2 33 0.0011 25.5 2.4 16 10-25 117-132 (208)
183 3gd7_A Fusion complex of cysti 27.9 69 0.0024 26.4 4.5 18 7-24 165-182 (390)
184 3b0c_W CENP-W, centromere prot 27.8 82 0.0028 19.3 3.9 14 167-180 57-70 (76)
185 3vkg_A Dynein heavy chain, cyt 27.8 2.2E+02 0.0076 30.6 8.8 42 62-104 706-751 (3245)
186 3ber_A Probable ATP-dependent 27.4 61 0.0021 24.4 3.9 14 16-29 187-200 (249)
187 3kl4_A SRP54, signal recogniti 27.3 1.6E+02 0.0056 24.6 6.8 57 115-181 283-341 (433)
188 1ji0_A ABC transporter; ATP bi 27.2 80 0.0027 23.8 4.5 18 7-24 149-166 (240)
189 1tzy_D Histone H4-VI; histone- 26.9 51 0.0018 21.7 2.9 44 116-180 51-94 (103)
190 1nlf_A Regulatory protein REPA 26.7 1.2E+02 0.0042 23.0 5.7 17 14-30 132-148 (279)
191 1g5t_A COB(I)alamin adenosyltr 26.5 1.9E+02 0.0066 21.3 7.1 69 5-91 106-178 (196)
192 2yfw_B Histone H4, H4; cell cy 26.4 53 0.0018 21.6 2.9 45 116-181 51-95 (103)
193 2i3b_A HCR-ntpase, human cance 26.4 1.8E+02 0.0062 20.9 7.3 16 12-27 102-117 (189)
194 1u94_A RECA protein, recombina 26.1 39 0.0013 27.5 2.7 19 12-30 138-156 (356)
195 3osj_A Phycobilisome LCM core- 25.8 1.1E+02 0.0039 21.6 4.7 56 124-179 17-72 (147)
196 3bh0_A DNAB-like replicative h 25.8 1.6E+02 0.0054 23.1 6.2 18 12-29 176-195 (315)
197 3dm5_A SRP54, signal recogniti 25.6 3E+02 0.01 23.1 8.2 153 4-181 171-341 (443)
198 2b8t_A Thymidine kinase; deoxy 25.6 87 0.003 23.5 4.4 23 5-27 75-101 (223)
199 3cmw_A Protein RECA, recombina 25.3 63 0.0021 32.3 4.3 65 2-70 1496-1565(1706)
200 1z47_A CYSA, putative ABC-tran 25.0 20 0.0007 29.3 0.7 18 7-24 155-172 (355)
201 2qr3_A Two-component system re 24.9 1.4E+02 0.0048 19.1 5.1 20 4-23 36-55 (140)
202 2c45_A Aspartate 1-decarboxyla 24.8 33 0.0011 24.0 1.7 21 9-29 96-116 (139)
203 2olj_A Amino acid ABC transpor 24.5 1.2E+02 0.004 23.3 5.1 18 7-24 169-186 (263)
204 1ns5_A Hypothetical protein YB 24.2 1.6E+02 0.0054 20.9 5.3 43 62-107 97-142 (155)
205 1b0u_A Histidine permease; ABC 24.1 1.1E+02 0.0036 23.5 4.7 18 7-24 163-180 (262)
206 3qkt_A DNA double-strand break 23.6 1.3E+02 0.0043 23.9 5.3 18 8-25 265-282 (339)
207 2r6a_A DNAB helicase, replicat 23.6 2E+02 0.0068 23.8 6.7 19 12-30 310-328 (454)
208 4g9q_A 4-carboxymuconolactone 23.4 1.8E+02 0.0061 22.7 5.9 68 75-142 48-120 (269)
209 3nhm_A Response regulator; pro 23.2 1.5E+02 0.0051 18.8 7.0 20 4-23 36-55 (133)
210 2hue_C Histone H4; mini beta s 23.2 38 0.0013 21.4 1.7 43 117-180 33-75 (84)
211 3fmo_B ATP-dependent RNA helic 22.6 80 0.0027 24.6 3.8 15 15-29 235-249 (300)
212 3thx_A DNA mismatch repair pro 22.5 1.5E+02 0.0052 27.5 6.1 50 13-76 739-788 (934)
213 1n1j_A NF-YB; histone-like PAI 22.3 97 0.0033 19.7 3.6 15 167-181 62-76 (93)
214 2it1_A 362AA long hypothetical 22.2 48 0.0016 27.1 2.5 18 7-24 143-160 (362)
215 3d31_A Sulfate/molybdate ABC t 22.1 53 0.0018 26.7 2.7 18 7-24 137-154 (348)
216 1o6d_A Hypothetical UPF0247 pr 22.1 1.5E+02 0.005 21.3 4.8 43 62-107 96-141 (163)
217 3cnb_A DNA-binding response re 22.0 1.6E+02 0.0056 18.8 8.2 20 4-23 43-62 (143)
218 3lte_A Response regulator; str 22.0 1.6E+02 0.0055 18.7 8.6 20 4-23 39-58 (132)
219 3ly5_A ATP-dependent RNA helic 21.7 50 0.0017 25.1 2.4 14 16-29 202-215 (262)
220 1g6u_A Domain swapped dimer; d 21.7 59 0.002 17.5 1.9 17 121-137 11-27 (48)
221 2ys9_A Homeobox and leucine zi 21.6 1.3E+02 0.0043 18.4 3.7 34 100-134 19-52 (70)
222 3fvq_A Fe(3+) IONS import ATP- 21.5 61 0.0021 26.4 3.0 18 7-24 148-165 (359)
223 3gl9_A Response regulator; bet 21.4 1.6E+02 0.0056 18.6 7.6 19 4-22 35-53 (122)
224 1g29_1 MALK, maltose transport 21.4 51 0.0017 27.0 2.5 18 7-24 149-166 (372)
225 3thx_B DNA mismatch repair pro 21.4 2E+02 0.0068 26.7 6.6 51 13-77 750-800 (918)
226 2yyz_A Sugar ABC transporter, 21.2 54 0.0018 26.7 2.6 18 7-24 143-160 (359)
227 4gp7_A Metallophosphoesterase; 21.1 20 0.0007 25.4 0.0 63 8-75 94-161 (171)
228 2hg7_A Phage-like element PBSX 21.1 64 0.0022 21.1 2.4 39 86-124 34-72 (110)
229 1v43_A Sugar-binding transport 21.1 51 0.0017 27.0 2.4 18 7-24 151-168 (372)
230 4a8j_C Elongator complex prote 20.7 1.2E+02 0.0043 23.8 4.5 30 2-31 134-165 (280)
231 2qvg_A Two component response 20.7 1.8E+02 0.0061 18.7 5.9 19 5-23 43-67 (143)
232 3rlf_A Maltose/maltodextrin im 20.6 48 0.0016 27.3 2.2 18 7-24 143-160 (381)
233 1wrb_A DJVLGB; RNA helicase, D 20.3 72 0.0024 23.8 3.0 14 16-29 175-188 (253)
234 2o03_A Probable zinc uptake re 20.2 2E+02 0.0068 19.2 5.1 34 167-200 26-59 (131)
235 3ox6_A Calcium-binding protein 20.2 1.9E+02 0.0064 18.8 6.5 26 167-192 104-130 (153)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.9e-43 Score=317.93 Aligned_cols=196 Identities=28% Similarity=0.507 Sum_probs=115.7
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCC--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++|+++|..|+..+||||||||+|+++++|+.. ++++..++++++||++|||+.+. .+|+||||||+||.||+|
T Consensus 557 ~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~----~~V~vi~aTN~p~~lD~A 632 (806)
T 3cf2_A 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK----KNVFIIGATNRPDIIDPA 632 (806)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS----SSEEEECC-CCSSSSCHH
T ss_pred HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC----CCEEEEEeCCCchhCCHh
Confidence 689999999999999999999999999998642 34556789999999999999876 789999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhH--
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQ-- 155 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~-- 155 (202)
++| |||+.|+|++|+.++|.+||+.++++.++..++|+..||+.|+||||+||+++|++|++.|+++.........
T Consensus 633 llRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~ 712 (806)
T 3cf2_A 633 ILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERE 712 (806)
T ss_dssp HHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC--------
T ss_pred HcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999 9999999999999999999999999999999999999999999999999999999999999998765321110
Q ss_pred ------HhhhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Q psy3540 156 ------IKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 201 (202)
Q Consensus 156 ------~~~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~ 201 (202)
..........++|+++||++|+++++||++.+++++|++|.++|++
T Consensus 713 ~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 713 RQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp ---------------CCC----CCTTTC---------------CCCC-----
T ss_pred hccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 0111223345689999999999999999999999999999998874
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-40 Score=280.74 Aligned_cols=173 Identities=28% Similarity=0.428 Sum_probs=150.5
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC--cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++|+.+|..|+.++||||||||+|+++++|..+. .+....+++++||++|||+.+. .+|+||||||+|+.||||
T Consensus 228 ~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~----~~V~vIaATNrpd~LDpA 303 (405)
T 4b4t_J 228 RMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS----KNIKIIMATNRLDILDPA 303 (405)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC----CCEEEEEEESCSSSSCHH
T ss_pred HHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC----CCeEEEeccCChhhCCHh
Confidence 6899999999999999999999999999886433 2345678999999999999876 789999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| |||++|+||+|+.++|.+||+.+++++++..++|+..||..|+||||+||+++|++|++.|+++..
T Consensus 304 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~--------- 374 (405)
T 4b4t_J 304 LLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR--------- 374 (405)
T ss_dssp HHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC---------
Confidence 999 999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW 195 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~ 195 (202)
..|+++||+.|++++.|+.....+..++.|
T Consensus 375 --------~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 375 --------IHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp --------SBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred --------CCcCHHHHHHHHHHHhCccccccchhHhhh
Confidence 279999999999999876555555555555
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-39 Score=275.96 Aligned_cols=167 Identities=22% Similarity=0.393 Sum_probs=151.9
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC--cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++++.+|..|++.+||||||||+|+++++|...+ ......+++++||++||++... .+|+||||||+|+.||+|
T Consensus 262 k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~----~~ViVIaATNrpd~LDpA 337 (437)
T 4b4t_I 262 RLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR----GDVKVIMATNKIETLDPA 337 (437)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS----SSEEEEEEESCSTTCCTT
T ss_pred HHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC----CCEEEEEeCCChhhcCHH
Confidence 6799999999999999999999999999985433 2345678899999999999876 789999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| |||++|+|++||.++|.+||+.+++++++..++|+..||..|+||||+||+++|++|++.|+++..
T Consensus 338 LlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~--------- 408 (437)
T 4b4t_I 338 LIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR--------- 408 (437)
T ss_dssp SSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC---------
Confidence 999 999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCCCCHHHH
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKSVTAHDL 189 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~ 189 (202)
..|+.+||+.|++++.|+.+.+++
T Consensus 409 --------~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 409 --------MQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp --------SCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred --------CccCHHHHHHHHHHHhCCCChhhH
Confidence 269999999999999988766554
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-38 Score=270.32 Aligned_cols=174 Identities=25% Similarity=0.417 Sum_probs=148.4
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCc--chHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSE--HEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++++.+|..|+..+||||||||+|+++++|+..+. .....+++++||++||++... .+|+||||||+|+.||+|
T Consensus 289 k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~----~~ViVIaATNrpd~LDpA 364 (467)
T 4b4t_H 289 RMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR----GNIKVMFATNRPNTLDPA 364 (467)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT----TTEEEEEECSCTTSBCHH
T ss_pred HHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC----CcEEEEeCCCCcccCChh
Confidence 68999999999999999999999999999865333 345678899999999999876 789999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| |||++|+|++|+.++|.+||+.+++++++..++|+..||+.|+||||+||+++|++|++.|+++...
T Consensus 365 LlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~-------- 436 (467)
T 4b4t_H 365 LLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK-------- 436 (467)
T ss_dssp HHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS--------
T ss_pred hhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC--------
Confidence 999 9999999999999999999999999999999999999999999999999999999999999987432
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCCCC-HHHHHHHHHHH
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKSVT-AHDLSKYDSWM 196 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps~s-~~~~~~~~~~~ 196 (202)
.|+.+||+.|++++.++.. .+...+|.+|.
T Consensus 437 ---------~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 437 ---------VATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp ---------SBCHHHHHHHHHHHHHHHCC-----------
T ss_pred ---------ccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 6999999999999876433 24556788874
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-38 Score=270.97 Aligned_cols=167 Identities=30% Similarity=0.443 Sum_probs=149.5
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC--cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++++.+|..|+.++||||||||+|+++++|..++ ......+++++||++|||+.+. .+|+||||||+|+.||||
T Consensus 261 ~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~----~~vivI~ATNrp~~LDpA 336 (437)
T 4b4t_L 261 RIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL----GQTKIIMATNRPDTLDPA 336 (437)
T ss_dssp HHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT----TSSEEEEEESSTTSSCTT
T ss_pred HHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC----CCeEEEEecCCchhhCHH
Confidence 5799999999999999999999999999986433 2345678899999999999886 789999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| |||++|+||+|+.++|.+||+.+++++++..++|+..||..|+||||+||+++|++|++.|+++...
T Consensus 337 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~-------- 408 (437)
T 4b4t_L 337 LLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRD-------- 408 (437)
T ss_dssp TTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCS--------
T ss_pred HhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC--------
Confidence 998 8999999999999999999999999999989999999999999999999999999999999876432
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCCCCHHHH
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKSVTAHDL 189 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~ 189 (202)
.|+.+||+.|++++.|+...+..
T Consensus 409 ---------~i~~~d~~~Al~~v~~~~k~e~~ 431 (437)
T 4b4t_L 409 ---------HINPDDLMKAVRKVAEVKKLEGT 431 (437)
T ss_dssp ---------SBCHHHHHHHHHHHHHTCC----
T ss_pred ---------CCCHHHHHHHHHHHHhccCcccc
Confidence 69999999999999998765443
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-38 Score=271.11 Aligned_cols=164 Identities=26% Similarity=0.433 Sum_probs=149.8
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcc--hHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEH--EASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~--~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++++.+|..|+..+||||||||+|+|+++|...... ....+++++||++||++.+. .+|+||||||+|+.||||
T Consensus 261 ~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~----~~ViVIaaTNrp~~LD~A 336 (434)
T 4b4t_M 261 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD----DRVKVLAATNRVDVLDPA 336 (434)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS----CSSEEEEECSSCCCCCTT
T ss_pred HHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC----CCEEEEEeCCCchhcCHh
Confidence 679999999999999999999999999998643322 34567889999999999886 789999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| |||++|+||+|+.++|.+||+.+++++++..++|+..||..|+||||+||+++|++|++.|+++..
T Consensus 337 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~--------- 407 (434)
T 4b4t_M 337 LLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ--------- 407 (434)
T ss_dssp TCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC---------
Confidence 999 999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCCCCH
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKSVTA 186 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps~s~ 186 (202)
..|+.+||..|+++++|+.+.
T Consensus 408 --------~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 408 --------SSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp --------SSBCHHHHHHHHHSCSSSCCC
T ss_pred --------CCcCHHHHHHHHHHHhCCCCc
Confidence 279999999999999998763
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-38 Score=267.05 Aligned_cols=167 Identities=25% Similarity=0.378 Sum_probs=149.7
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCC--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++|+.+|..|+..+||||||||+|+++++|... +.+....+++++||++|||+.+. .+|+||||||+|+.||||
T Consensus 252 ~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~----~~v~vI~aTN~~~~LD~A 327 (428)
T 4b4t_K 252 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS----TNVKVIMATNRADTLDPA 327 (428)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS----CSEEEEEEESCSSSCCHH
T ss_pred HHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC----CCEEEEEecCChhhcChh
Confidence 679999999999999999999999999998542 23345678999999999999886 789999999999999999
Q ss_pred HHh--cccceeeec-CCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHH
Q psy3540 80 FRR--RFEKRVYIP-LPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQI 156 (202)
Q Consensus 80 l~r--rf~~~i~i~-~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~ 156 (202)
++| |||++|+|| +|+.++|..||+.+++++++.+++|+..||..|+||||+||+++|++|++.|+++...
T Consensus 328 llRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~------- 400 (428)
T 4b4t_K 328 LLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY------- 400 (428)
T ss_dssp HHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCS-------
T ss_pred hhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC-------
Confidence 999 999999996 8999999999999999999999999999999999999999999999999999987432
Q ss_pred hhhhhccCCCCCcHHHHHHHHHH-hCCCCCHHHH
Q psy3540 157 KEIKQEDIDLPVTEKDFREAIAR-CRKSVTAHDL 189 (202)
Q Consensus 157 ~~~~~~~~~~~it~~df~~Al~~-~~Ps~s~~~~ 189 (202)
.|+++||++|+.. ++|+.+.+.+
T Consensus 401 ----------~i~~~d~~~A~~~~~~~~~~~~~~ 424 (428)
T 4b4t_K 401 ----------VILQSDLEEAYATQVKTDNTVDKF 424 (428)
T ss_dssp ----------SBCHHHHHHHHHHHSCSCCCSSCC
T ss_pred ----------CCCHHHHHHHHHHhhCccCCccHh
Confidence 7999999999976 5676665443
No 8
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=245.12 Aligned_cols=196 Identities=35% Similarity=0.615 Sum_probs=167.5
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
+.++.+|..|+..+|+||||||+|.++++++.. ..+...++.++|+..|+++... ..+++||+|||.|+.+|++++
T Consensus 92 ~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~---~~~v~vI~atn~~~~ld~al~ 167 (322)
T 1xwi_A 92 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVD---NDGILVLGATNIPWVLDSAIR 167 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSSC---CTTEEEEEEESCTTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhccccc---CCCEEEEEecCCcccCCHHHH
Confidence 468999999999999999999999999988543 4566789999999999998753 367999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCCh-------
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTP------- 153 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~------- 153 (202)
|||+..+++++|+.++|..||+.++++.+.. .+.++..||..|+||||+||..+|++|.+.|+++.......
T Consensus 168 rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~ 247 (322)
T 1xwi_A 168 RRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPS 247 (322)
T ss_dssp HTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEEC
T ss_pred hhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 9999999999999999999999999877654 67899999999999999999999999999999987642100
Q ss_pred --------------------h----HHhhh-hhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Q psy3540 154 --------------------A----QIKEI-KQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 201 (202)
Q Consensus 154 --------------------~----~~~~~-~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~ 201 (202)
+ .+..+ .+....++|+.+||+.|++.++||++++++..|++|.++||+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 248 RADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320 (322)
T ss_dssp SSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCS
T ss_pred ccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcc
Confidence 0 00001 111224689999999999999999999999999999999997
No 9
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=7.6e-34 Score=238.48 Aligned_cols=196 Identities=38% Similarity=0.618 Sum_probs=161.3
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
+.++.+|..|+..+|+||||||+|.+.+.++. +..+...++.++|+..|+++... ..+++||+|||.|+.||++++
T Consensus 130 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~ll~~l~~~~~~---~~~v~vI~atn~~~~ld~al~ 205 (355)
T 2qp9_X 130 KLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGND---SQGVLVLGATNIPWQLDSAIR 205 (355)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC------CCEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEechHhhcccCCC-CcchHHHHHHHHHHHHhhccccc---CCCeEEEeecCCcccCCHHHH
Confidence 46889999999999999999999999988754 34566788999999999998653 267999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCC------h-
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQT------P- 153 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~------~- 153 (202)
|||+..+++++|+.++|..||+.++.+.+.. .+.++..||..|+||+|+||.++|++|.+.|+++...... .
T Consensus 206 rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~ 285 (355)
T 2qp9_X 206 RRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTED 285 (355)
T ss_dssp HTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC--
T ss_pred cccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 9999999999999999999999999877653 6789999999999999999999999999999988653210 0
Q ss_pred -----------h-------HHhhh-hhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Q psy3540 154 -----------A-------QIKEI-KQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 201 (202)
Q Consensus 154 -----------~-------~~~~~-~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~ 201 (202)
. .+..+ ......++|+.+||+.|++.++||++++++..|++|.++||+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 286 DETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp ---CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred ccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 0 00001 112234689999999999999999999999999999999996
No 10
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=8.7e-34 Score=235.04 Aligned_cols=196 Identities=38% Similarity=0.613 Sum_probs=162.8
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
+.++.+|..|+..+|+||||||+|.+.++++. +..+...++.++|+..|+++... ..+++||+|||.|+.||++++
T Consensus 97 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~---~~~v~vi~atn~~~~ld~al~ 172 (322)
T 3eie_A 97 KLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGND---SQGVLVLGATNIPWQLDSAIR 172 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGTS---CCCEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEechhhhhhccCCC-CcchHHHHHHHHHHHHhcccccc---CCceEEEEecCChhhCCHHHH
Confidence 46889999999999999999999999988743 34455678999999999998643 367999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhH-----
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQ----- 155 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~----- 155 (202)
|||+..+++++|+.++|.+||+.++++.+.. .+.++..||..|+||+|+||..+|++|.+.++++.........
T Consensus 173 ~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~ 252 (322)
T 3eie_A 173 RRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTED 252 (322)
T ss_dssp HHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC---
T ss_pred cccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Confidence 9999999999999999999999999877654 6789999999999999999999999999999998764311000
Q ss_pred --------------------Hhhh-hhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Q psy3540 156 --------------------IKEI-KQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 201 (202)
Q Consensus 156 --------------------~~~~-~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~ 201 (202)
+..+ .+....++||.+||.+|++.++||++.+++.+|++|.++||+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 253 DETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp -CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred ccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence 0000 111224689999999999999999999999999999999996
No 11
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.3e-33 Score=243.53 Aligned_cols=196 Identities=35% Similarity=0.625 Sum_probs=166.6
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
+.++.+|..|+..+|+||||||+|.+++.+... ..+...++.++|+..|+++... ..+|+||+|||.|+.+|++++
T Consensus 214 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~~---~~~v~vI~atn~~~~ld~al~ 289 (444)
T 2zan_A 214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVD---NDGILVLGATNIPWVLDSAIR 289 (444)
T ss_dssp CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSCC---CSSCEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCcccC---CCCEEEEecCCCccccCHHHH
Confidence 468899999999999999999999999887543 4566788999999999998642 367999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCC--------
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQT-------- 152 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~-------- 152 (202)
|||+..+++++|+.++|..||+.++.+.+.. .+.++..||..|+||||+||..+|++|.+.|+++......
T Consensus 290 rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~ 369 (444)
T 2zan_A 290 RRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPS 369 (444)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBC
T ss_pred hhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 9999999999999999999999999877653 6789999999999999999999999999999998764310
Q ss_pred ----------------hhH-------Hhhh-hhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Q psy3540 153 ----------------PAQ-------IKEI-KQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 201 (202)
Q Consensus 153 ----------------~~~-------~~~~-~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~ 201 (202)
++. +..+ .+....++||++||..|++.++||++++++..|++|.++||+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~ 442 (444)
T 2zan_A 370 RADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQ 442 (444)
T ss_dssp SSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCTT
T ss_pred ccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC
Confidence 000 0000 011224689999999999999999999999999999999997
No 12
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1e-34 Score=263.54 Aligned_cols=193 Identities=29% Similarity=0.449 Sum_probs=161.1
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
++++.+|+.|++++||||||||+|+|+++|++ ..++...+++++||.+||++.+. .+|+||+|||+|+.||++++
T Consensus 284 ~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~-~~~~~~~riv~~LL~~mdg~~~~----~~V~VIaaTN~~d~LD~ALr 358 (806)
T 3cf2_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THGEVERRIVSQLLTLMDGLKQR----AHVIVMAATNRPNSIDPALR 358 (806)
T ss_dssp HHHHHHHHHHTTSCSEEEEEESGGGTCCTTTT-CCCTTHHHHHHHHHTHHHHCCGG----GCEEEEEECSSTTTSCTTTT
T ss_pred HHHHHHHHHHHHcCCeEEEEehhcccccccCC-CCChHHHHHHHHHHHHHhccccc----CCEEEEEecCChhhcCHHHh
Confidence 57999999999999999999999999999864 34556789999999999999876 78999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 159 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~ 159 (202)
| ||+++|++++|+.++|.+||+.+++++++..++|+..||..|+||+|+||+.+|++|++.|+++.............
T Consensus 359 R~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~ 438 (806)
T 3cf2_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438 (806)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCS
T ss_pred CCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9 99999999999999999999999999999999999999999999999999999999999999987542111000000
Q ss_pred hhccCCCCCcHHHHHHHHHHhCCC-----------CCHHHHHHHHHHHHHh
Q psy3540 160 KQEDIDLPVTEKDFREAIARCRKS-----------VTAHDLSKYDSWMNEF 199 (202)
Q Consensus 160 ~~~~~~~~it~~df~~Al~~~~Ps-----------~s~~~~~~~~~~~~~~ 199 (202)
.+......|+.+||..|++.++|+ ++|+++..+++.++..
T Consensus 439 ~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l 489 (806)
T 3cf2_A 439 AEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKREL 489 (806)
T ss_dssp HHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHH
T ss_pred hhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHH
Confidence 001112468999999999998865 4566666666666543
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=7.8e-33 Score=227.38 Aligned_cols=195 Identities=28% Similarity=0.509 Sum_probs=162.4
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCC--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++++.+|..|+..+|+||||||+|.+++.++.. ...+...++.++|+..|+++... .+|+||+|||+|+.+|++
T Consensus 95 ~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~----~~v~vi~atn~~~~ld~a 170 (301)
T 3cf0_A 95 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK----KNVFIIGATNRPDIIDPA 170 (301)
T ss_dssp THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT----SSEEEEEEESCGGGSCGG
T ss_pred HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC----CCEEEEEecCCccccChH
Confidence 468899999999999999999999999877432 11234457889999999998765 679999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHH-
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQI- 156 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~- 156 (202)
++| ||+..+++++|+.++|.+||+.++++.++..++++..++..|+||+|+||+++|++|.+.|+.+..........
T Consensus 171 l~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~ 250 (301)
T 3cf0_A 171 ILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERE 250 (301)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999 99999999999999999999999998888788999999999999999999999999999999876532110000
Q ss_pred -----h--hhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC
Q psy3540 157 -----K--EIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 200 (202)
Q Consensus 157 -----~--~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~ 200 (202)
. .........+|+.+||+.|++.++||++.+++..|++|.++|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 251 RQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp ---------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 0 0000112357999999999999999999999999999999984
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=8.7e-31 Score=212.69 Aligned_cols=177 Identities=33% Similarity=0.541 Sum_probs=138.7
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
++++.+|+.|+...|||+|+||+|.++..++.. ..+...++.++++.+|++.... ..++++++||+|+.||++++
T Consensus 90 ~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~~----~~~i~ia~tn~p~~LD~al~ 164 (274)
T 2x8a_A 90 RAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEAR----QQVFIMAATNRPDIIDPAIL 164 (274)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCST----TCEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhccccc----CCEEEEeecCChhhCCHhhc
Confidence 468999999999999999999999998776432 2233456789999999998775 77999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcC---cccCCcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHhcCChh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEG---VVIDVNLDFHKISKML--EGYTGSDIANLARDAAMMSIRRKIMGQTPA 154 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~---~~~~~~~~~~~la~~t--~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~ 154 (202)
| |||+.|++++|+.++|.+||+.++++ .++..++++..+|..| +||||+||+++|++|++.|+++.......
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~- 243 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS- 243 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC------
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc-
Confidence 9 99999999999999999999999953 4556789999999975 59999999999999999999875432110
Q ss_pred HHhhhhhccCCCCCcHHHHHHHHHHhCCCCCHHHH
Q psy3540 155 QIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDL 189 (202)
Q Consensus 155 ~~~~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~ 189 (202)
........|+.+||+.|+++++||++.+++
T Consensus 244 -----~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 244 -----GNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp -----------CCBCHHHHHHHHTTCCCCC-----
T ss_pred -----cccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 011123479999999999999999988764
No 15
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=211.54 Aligned_cols=192 Identities=36% Similarity=0.577 Sum_probs=154.8
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
+.++.+|..|+..+|+||||||+|.+++.+.. +......++.++|+..+++.... ...+++||+|||.++.+|++++
T Consensus 163 ~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~--~~~~v~vI~atn~~~~l~~~l~ 239 (357)
T 3d8b_A 163 KMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTS--SEDRILVVGATNRPQEIDEAAR 239 (357)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC------CCCCEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCchhhhccCCC-CcchHHHHHHHHHHHHHhccccc--CCCCEEEEEecCChhhCCHHHH
Confidence 45788999999999999999999999987743 33456678999999999998753 3367999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhh
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIK 160 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~ 160 (202)
|||+..+++++|+.++|.++++.++...... .+.++..|+..|+||+++||..+|+.|...++++....... . .
T Consensus 240 ~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~----~-~ 314 (357)
T 3d8b_A 240 RRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIA----T-I 314 (357)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-----------
T ss_pred hhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhc----c-c
Confidence 9999999999999999999999999765433 46689999999999999999999999999988753211100 0 0
Q ss_pred hccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Q psy3540 161 QEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 201 (202)
Q Consensus 161 ~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~ 201 (202)
......+|+.+||..|++.++||++.++++.|++|.+.||+
T Consensus 315 ~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~ 355 (357)
T 3d8b_A 315 TPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355 (357)
T ss_dssp ----CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSC
T ss_pred cccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 01123479999999999999999999999999999999996
No 16
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.96 E-value=1.2e-28 Score=201.26 Aligned_cols=194 Identities=41% Similarity=0.612 Sum_probs=150.1
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
+.++.+|..|...+|+||||||+|.++..+.. ...+...++.+.|+..+++.... ....+++||++||.|+.+|++++
T Consensus 100 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~-~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 100 KLVRALFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGN-PDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC-------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEeccHHHhcccccc-CcchHHHHHHHHHHHHHhccccc-CCCCcEEEEeecCChhhCCHHHH
Confidence 35788999999999999999999999987743 22334567889999999998653 11256999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhh
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIK 160 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~ 160 (202)
|||+..+++++|+.++|..||+.++...+.. .+.++..++..|.||+++||..+|+.|...++++...... .. .
T Consensus 178 ~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~----~~-~ 252 (297)
T 3b9p_A 178 RRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQV----KC-L 252 (297)
T ss_dssp HHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC------------
T ss_pred hhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhc----cc-c
Confidence 9999999999999999999999999765432 4567899999999999999999999999999876421110 00 0
Q ss_pred hccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCC
Q psy3540 161 QEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGSH 202 (202)
Q Consensus 161 ~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~~ 202 (202)
......+|+.+||..|+..++||++.+++..|++|.+.||+.
T Consensus 253 ~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 253 DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDI 294 (297)
T ss_dssp -CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC------
T ss_pred cccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCe
Confidence 011224799999999999999999999999999999999963
No 17
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=201.21 Aligned_cols=193 Identities=37% Similarity=0.578 Sum_probs=153.2
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
+.++.+|..|+..+|+||||||+|.++..+.. +......++.+.|+..++++... ...+|+||+|||.++.+|++++
T Consensus 194 ~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~--~~~~v~vI~atn~~~~l~~~l~ 270 (389)
T 3vfd_A 194 KLVRALFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSA--GDDRVLVMGATNRPQELDEAVL 270 (389)
T ss_dssp HHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-------CEEEEEEESCGGGCCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEECchhhcccCCC-ccchHHHHHHHHHHHHhhccccc--CCCCEEEEEecCCchhcCHHHH
Confidence 35789999999999999999999999987743 33445678899999999988764 3367999999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhh
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIK 160 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~ 160 (202)
|||+..++++.|+.++|..||+.++...... .+.++..|+..++||+++||..||+.|...++++...... .. .
T Consensus 271 ~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~----~~-~ 345 (389)
T 3vfd_A 271 RRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQV----KN-M 345 (389)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC-------C-C
T ss_pred cCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhh----hc-c
Confidence 9999999999999999999999999764432 4567899999999999999999999999999876432110 00 0
Q ss_pred hccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCC
Q psy3540 161 QEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGSH 202 (202)
Q Consensus 161 ~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~~ 202 (202)
.......|+.+||..+++.++|+++.+.++.|++|.++||+.
T Consensus 346 ~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 346 SASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 387 (389)
T ss_dssp SSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC--
T ss_pred chhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCc
Confidence 011234799999999999999999999999999999999974
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.95 E-value=8.7e-28 Score=209.01 Aligned_cols=187 Identities=29% Similarity=0.448 Sum_probs=147.0
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
.+++.+|..|...+|+||||||+|.++++++. ...+...++.+.|+..|+++... ..++||+|||+|+.||++++
T Consensus 284 ~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~-~~~~~~~~~~~~LL~~ld~~~~~----~~v~vIaaTn~~~~Ld~al~ 358 (489)
T 3hu3_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THGEVERRIVSQLLTLMDGLKQR----AHVIVMAATNRPNSIDPALR 358 (489)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS-CCCHHHHHHHHHHHHHHHHSCTT----SCEEEEEEESCGGGBCGGGG
T ss_pred HHHHHHHHHHHhcCCcEEEecchhhhcccccc-ccchHHHHHHHHHHHHhhccccC----CceEEEEecCCccccCHHHh
Confidence 36789999999999999999999999998754 34566788999999999998765 77999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 159 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~ 159 (202)
| ||+..+++++|+.++|.+||+.+++..++..++++..++..|.||+++||..||++|.+.++++.............
T Consensus 359 r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~ 438 (489)
T 3hu3_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438 (489)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCC
T ss_pred CCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9 99999999999999999999999999888888999999999999999999999999999999875432111000000
Q ss_pred hhccCCCCCcHHHHHHHHHHhC-----------CCCCHHHHHHHH
Q psy3540 160 KQEDIDLPVTEKDFREAIARCR-----------KSVTAHDLSKYD 193 (202)
Q Consensus 160 ~~~~~~~~it~~df~~Al~~~~-----------Ps~s~~~~~~~~ 193 (202)
........|+.+||+.|++.++ |+++|+++..|.
T Consensus 439 ~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 439 AEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp HHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred hhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 0011124799999999999887 556677766653
No 19
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=3.9e-31 Score=242.15 Aligned_cols=195 Identities=28% Similarity=0.504 Sum_probs=136.2
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC--cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++++.+|+.|+...||||||||+|.++..|+... ..+...+++++||..||++... .+|+||+|||+|+.||++
T Consensus 557 ~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~----~~v~vI~tTN~~~~ld~a 632 (806)
T 1ypw_A 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK----KNVFIIGATNRPDIIDPA 632 (806)
T ss_dssp HHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC----------CCBCCCCCBSCGGGSCT
T ss_pred HHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc----CCeEEEEecCCcccCCHH
Confidence 5789999999999999999999999999886432 2346789999999999999775 789999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCCh----
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTP---- 153 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~---- 153 (202)
++| ||+..|++++|+.++|..||+.++++.++..++++..||..|+||||+||.++|+.|.+.|+++.......
T Consensus 633 llrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~ 712 (806)
T 1ypw_A 633 ILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERE 712 (806)
T ss_dssp TSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC----------
T ss_pred HhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999 99999999999999999999999999888888999999999999999999999999999999875432110
Q ss_pred ----hHHhhhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC
Q psy3540 154 ----AQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 200 (202)
Q Consensus 154 ----~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~ 200 (202)
............++|+.+||++|++.++||++.+++.+|++|.++|+
T Consensus 713 ~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~ 763 (806)
T 1ypw_A 713 RQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 763 (806)
T ss_dssp --------------CCTTTTTTSSCCCCCC---------------------
T ss_pred hcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 00000111222457999999999999999999999999999999875
No 20
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.94 E-value=8.2e-27 Score=201.84 Aligned_cols=161 Identities=30% Similarity=0.501 Sum_probs=138.4
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCC--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++++.+|..|+..+||||||||+|.++.+++.. +......+++++|+..||++... .+++||+|||+|+.+|++
T Consensus 95 ~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~----~~viVIaaTn~~~~Ld~a 170 (476)
T 2ce7_A 95 ARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK----EGIIVMAATNRPDILDPA 170 (476)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG----GTEEEEEEESCGGGSCGG
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC----CCEEEEEecCChhhhchh
Confidence 467899999999999999999999999887532 22334567899999999998765 679999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| ||++.+++++|+..+|.+||+.++++.++..++++..+|..|+||+|+||.++|++|+..|.++..
T Consensus 171 llR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~--------- 241 (476)
T 2ce7_A 171 LLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGR--------- 241 (476)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred hcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC---------
Confidence 998 999999999999999999999999998888889999999999999999999999999998875432
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKS 183 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps 183 (202)
..|+.+||..|+.++.+.
T Consensus 242 --------~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 242 --------DKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp --------SSBCHHHHHHHHHHHC--
T ss_pred --------CeecHHHHHHHHHHHhcC
Confidence 279999999999998753
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=4.3e-26 Score=184.97 Aligned_cols=180 Identities=27% Similarity=0.415 Sum_probs=141.8
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC--cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
+.++.+|..|+...|+||||||+|.+++++.... ......+.+..++..++++... .+++||+|||.++.+|++
T Consensus 97 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~----~~~~vI~ttn~~~~l~~~ 172 (285)
T 3h4m_A 97 SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR----GDVKIIGATNRPDILDPA 172 (285)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS----SSEEEEEECSCGGGBCHH
T ss_pred HHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC----CCEEEEEeCCCchhcCHH
Confidence 4578899999999999999999999998775422 2334567788889999888765 679999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| ||+..++++.|+.++|.+||+.++....+..++++..++..+.||+++||..+|+.|...|+.+...
T Consensus 173 l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~-------- 244 (285)
T 3h4m_A 173 ILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD-------- 244 (285)
T ss_dssp HHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCS--------
T ss_pred HcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC--------
Confidence 999 9999999999999999999999999888888889999999999999999999999999999876431
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHhCCC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRK--SVTAHDLSKYDSWMNEFGSH 202 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~P--s~s~~~~~~~~~~~~~~~~~ 202 (202)
.|+.+||.+|+..+.+ +.+...-..|..|...||++
T Consensus 245 ---------~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (285)
T 3h4m_A 245 ---------YVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHH 282 (285)
T ss_dssp ---------SBCHHHHHHHHHHHHHHHCCC-----------------
T ss_pred ---------cCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccC
Confidence 6999999999999864 23344556899999999875
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=3e-25 Score=177.76 Aligned_cols=161 Identities=29% Similarity=0.477 Sum_probs=141.0
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCC--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
+.++.+|+.|+...|+|+||||+|.+...++.. +......+.++.++..++++... .+++||+|||.|+.+|++
T Consensus 91 ~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~~~~vI~~tn~~~~l~~~ 166 (257)
T 1lv7_A 91 SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN----EGIIVIAATNRPDVLDPA 166 (257)
T ss_dssp HHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS----SCEEEEEEESCTTTSCGG
T ss_pred HHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC----CCEEEEEeeCCchhCCHH
Confidence 467899999999999999999999999877532 22233457889999999998765 679999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| ||+..+++++|+.++|.+|++.++++.++.+++++..++..|+||+++||.++|++|...|..+..
T Consensus 167 l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~--------- 237 (257)
T 1lv7_A 167 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK--------- 237 (257)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC---------
Confidence 998 999999999999999999999999988888889999999999999999999999999999876532
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKS 183 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps 183 (202)
..|+.+||..|++.+...
T Consensus 238 --------~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 238 --------RVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp --------SSBCHHHHHHHHHHHTTC
T ss_pred --------CcccHHHHHHHHHHHhcC
Confidence 279999999999987643
No 23
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=2.7e-25 Score=193.32 Aligned_cols=161 Identities=29% Similarity=0.467 Sum_probs=140.8
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCC--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++++.+|+.|+...|||+||||+|.+...++.. +......+.+++|+..|++.... ..++|+++||+|+.||++
T Consensus 110 ~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~----~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 110 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD----TAIVVMAATNRPDILDPA 185 (499)
T ss_dssp HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS----CCCEEEECCSCGGGSCTT
T ss_pred HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC----ccEEEEEecCChhhcCcc
Confidence 357899999998899999999999998877531 22344567889999999998765 679999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| ||++.+++++|+..+|.+||+.++++.++..++++..+|..|+||+|+||+++|++|+..|.++..
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~--------- 256 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR--------- 256 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC---------
T ss_pred cccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---------
Confidence 998 999999999999999999999999988888889999999999999999999999999988865421
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKS 183 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps 183 (202)
..|+.+||..|+.++.+.
T Consensus 257 --------~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 257 --------RKITMKDLEEAADRVMML 274 (499)
T ss_dssp --------SSCCSHHHHHHHHHHTTC
T ss_pred --------CccCHHHHHHHHHHHhcc
Confidence 269999999999998764
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.92 E-value=1.5e-24 Score=173.36 Aligned_cols=155 Identities=30% Similarity=0.487 Sum_probs=131.8
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCC--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
+.++.+|+.++...|+++++||+|.++..+... .......+.+++++..|++.... ..++++++||.|+.+|++
T Consensus 95 ~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~----~~~i~~a~t~~p~~ld~~ 170 (254)
T 1ixz_A 95 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD----TAIVVMAATNRPDILDPA 170 (254)
T ss_dssp HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT----CCEEEEEEESCGGGSCGG
T ss_pred HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC----CCEEEEEccCCchhCCHH
Confidence 357889999988899999999999998776431 22344567789999999988765 678999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| ||+..++++.|+.++|.+||+.++++.++..++++..+|..|+||+|+||+++|++|...|..+..
T Consensus 171 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~--------- 241 (254)
T 1ixz_A 171 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR--------- 241 (254)
T ss_dssp GGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC---------
Confidence 998 999999999999999999999999888888889999999999999999999999999988876521
Q ss_pred hhhhccCCCCCcHHHHHHHH
Q psy3540 158 EIKQEDIDLPVTEKDFREAI 177 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al 177 (202)
..|+.+||++|+
T Consensus 242 --------~~I~~~dl~~a~ 253 (254)
T 1ixz_A 242 --------RKITMKDLEEAA 253 (254)
T ss_dssp --------SSBCHHHHHHHT
T ss_pred --------CCcCHHHHHHHh
Confidence 269999999886
No 25
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=2.5e-23 Score=168.62 Aligned_cols=155 Identities=30% Similarity=0.487 Sum_probs=131.5
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCC--CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~--~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
+.++.+|+.+....|+++++||+|.++..+... .......+.++.++..|++.... ..++++++||.|+.+|++
T Consensus 119 ~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~----~~~i~~a~t~~p~~ld~~ 194 (278)
T 1iy2_A 119 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD----TAIVVMAATNRPDILDPA 194 (278)
T ss_dssp HHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT----CCEEEEEEESCTTSSCHH
T ss_pred HHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC----CCEEEEEecCCchhCCHh
Confidence 357889999998899999999999998766421 12334467788999999987654 679999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| ||+..+++++|+.++|.+||+.++++.++..++++..+|..|+||+++||+++|++|...|..+..
T Consensus 195 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~--------- 265 (278)
T 1iy2_A 195 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR--------- 265 (278)
T ss_dssp HHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC---------
Confidence 998 999999999999999999999999888888889999999999999999999999999988875421
Q ss_pred hhhhccCCCCCcHHHHHHHH
Q psy3540 158 EIKQEDIDLPVTEKDFREAI 177 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al 177 (202)
..|+.+||++|+
T Consensus 266 --------~~I~~~dl~~a~ 277 (278)
T 1iy2_A 266 --------RKITMKDLEEAA 277 (278)
T ss_dssp --------CSBCHHHHHHHT
T ss_pred --------CCcCHHHHHHHh
Confidence 169999999886
No 26
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.90 E-value=3e-24 Score=171.74 Aligned_cols=161 Identities=24% Similarity=0.425 Sum_probs=122.9
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC---cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS---EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
+.++.+|..|+..+|+||||||+|.++.++.... ........++.|+..++++... .+++||+|||.++.+|+
T Consensus 85 ~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~----~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 85 ARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT----DHVIVLASTNRADILDG 160 (262)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT----CCEEEEEEESCGGGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC----CCEEEEecCCChhhcCH
Confidence 4678899999999999999999999988764321 1223346788999999988664 67999999999999999
Q ss_pred HHHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcc--cHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChh
Q psy3540 79 AFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNL--DFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPA 154 (202)
Q Consensus 79 al~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~--~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~ 154 (202)
+++| ||+..+++++|+.++|.+||+.++....+..+. .+..++..+.||+++||..+|++|...|..+...
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~----- 235 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHT----- 235 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC------------
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC-----
Confidence 9999 999999999999999999999999876655433 4578999999999999999999999988765331
Q ss_pred HHhhhhhccCCCCCcHHHHHHHHHHhCCC
Q psy3540 155 QIKEIKQEDIDLPVTEKDFREAIARCRKS 183 (202)
Q Consensus 155 ~~~~~~~~~~~~~it~~df~~Al~~~~Ps 183 (202)
.|+.+||..|++.+.|+
T Consensus 236 ------------~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 236 ------------SVHTLNFEYAVERVLAG 252 (262)
T ss_dssp -------------CCBCCHHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHhccC
Confidence 69999999999998765
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.88 E-value=7.9e-25 Score=176.14 Aligned_cols=164 Identities=27% Similarity=0.488 Sum_probs=133.3
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCC---cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS---EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
.++.+|..|+..+|+||||||+|.+...+..++ ......++++.|+..+++.... ..+++||+|||.++.+|++
T Consensus 91 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~v~vi~ttn~~~~ld~~ 167 (268)
T 2r62_A 91 RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE---NAPVIVLAATNRPEILDPA 167 (268)
T ss_dssp SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS---CSCCEEEECBSCCTTSCGG
T ss_pred HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC---CCCEEEEEecCCchhcCHh
Confidence 456789999999999999999999988763211 1111223567788888877653 3568999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| ||+..+++++|+.++|.++|+.++++.++..++++..++..|.||+|+||.++|++|...|..+..
T Consensus 168 l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~--------- 238 (268)
T 2r62_A 168 LMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQ--------- 238 (268)
T ss_dssp GGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCC---------
T ss_pred HcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---------
Confidence 999 999999999999999999999999988877788899999999999999999999999887754311
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhCCCCCH
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCRKSVTA 186 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~Ps~s~ 186 (202)
..|+.+||..|+..+.|+...
T Consensus 239 --------~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 239 --------KEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp --------CSCCHHHHHTSCTTCCCCCC-
T ss_pred --------CCcCHHHHHHHHHHHhhcchh
Confidence 279999999999999998654
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.83 E-value=7e-20 Score=167.80 Aligned_cols=178 Identities=29% Similarity=0.459 Sum_probs=148.6
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
++++.+|+.|....|+|+||||+|.++++++. ...+...++...|+..++++... ..+++|+|||.|+.+|++++
T Consensus 284 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~-~~~~~~~~~~~~Ll~ll~g~~~~----~~v~vI~atn~~~~ld~al~ 358 (806)
T 1ypw_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THGEVERRIVSQLLTLMDGLKQR----AHVIVMAATNRPNSIDPALR 358 (806)
T ss_dssp HHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC-CCSHHHHHHHHHHHHHHHSSCTT----SCCEEEEECSCTTTSCTTTT
T ss_pred HHHHHHHHHHHhcCCcEEEeccHHHhhhcccc-ccchHHHHHHHHHHHHhhhhccc----ccEEEecccCCchhcCHHHh
Confidence 46889999999999999999999999998753 34456678999999999999876 77999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 159 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~ 159 (202)
+ ||+..+.++.|+.++|.+||+.++.++.+..+.++..++..|+||+++|+..+|.+|...++++.............
T Consensus 359 r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~ 438 (806)
T 1ypw_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438 (806)
T ss_dssp STTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCC
T ss_pred cccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccc
Confidence 9 99999999999999999999999999888888899999999999999999999999999988765432211111101
Q ss_pred hhccCCCCCcHHHHHHHHHHhCCCC
Q psy3540 160 KQEDIDLPVTEKDFREAIARCRKSV 184 (202)
Q Consensus 160 ~~~~~~~~it~~df~~Al~~~~Ps~ 184 (202)
........++.+||..++....|+.
T Consensus 439 ~~~~~~~~v~~~d~~~al~~~~~s~ 463 (806)
T 1ypw_A 439 AEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHTTCCCCTTHHHHHHHHSCCCC
T ss_pred hhhhhhhhhhhhhhhccccccCchh
Confidence 1112245788999999999988754
No 29
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.77 E-value=6.9e-19 Score=118.85 Aligned_cols=86 Identities=20% Similarity=0.360 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHH
Q psy3540 94 NEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDF 173 (202)
Q Consensus 94 ~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df 173 (202)
|.++|.+||+.+++++++.+++|+..||..|+||||+||+++|++|++.|+++.. .+|+++||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-----------------~~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-----------------ccCCHHHH
Confidence 5679999999999999999999999999999999999999999999999998843 27999999
Q ss_pred HHHHHHhCCCCCH-HHHHHHHHHH
Q psy3540 174 REAIARCRKSVTA-HDLSKYDSWM 196 (202)
Q Consensus 174 ~~Al~~~~Ps~s~-~~~~~~~~~~ 196 (202)
+.|++++.|+... .....|..|.
T Consensus 65 ~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 65 LKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHTC---------------
T ss_pred HHHHHHHhcCcccccchhHHhccC
Confidence 9999999998765 4467888884
No 30
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.76 E-value=4.7e-19 Score=118.44 Aligned_cols=82 Identities=16% Similarity=0.295 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHH
Q psy3540 94 NEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDF 173 (202)
Q Consensus 94 ~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df 173 (202)
|.++|.+||+.++++.++.+++|+..||..|+||||+||+++|++|++.|+++.. .+|+.+||
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-----------------~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENR-----------------YIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC-----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CCcCHHHH
Confidence 6889999999999999988899999999999999999999999999999987642 37999999
Q ss_pred HHHHHHhCCCCCHHHHHHHH
Q psy3540 174 REAIARCRKSVTAHDLSKYD 193 (202)
Q Consensus 174 ~~Al~~~~Ps~s~~~~~~~~ 193 (202)
..|+++++|+++ +++..|+
T Consensus 65 ~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 65 EKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp HHHHHHHCC-----------
T ss_pred HHHHHHHccCch-HHHHhcC
Confidence 999999999998 7777663
No 31
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.76 E-value=2.8e-18 Score=140.12 Aligned_cols=127 Identities=17% Similarity=0.233 Sum_probs=92.5
Q ss_pred hHHHHHHHHh----hhCCCeEEEEccccccccccCCCCc-chHHHHHHHHHHHHHhCCCCC-------CCCCceEEEEEe
Q psy3540 2 REVQRTNVPS----NSYRVSTIFIDEVDSLCSMRGSDSE-HEASRRFKAELLIQMDGLNSS-------LYEDKIIMILAA 69 (202)
Q Consensus 2 k~i~~~F~~A----~~~~P~Ii~iDeiD~l~~~r~~~~~-~~~~~~~~~~ll~~ld~~~~~-------~~~~~~v~viat 69 (202)
+.++.+|..| +..+||||||||+|.+++.+++... ......+.+.|++.||+.... .....+++||+|
T Consensus 82 ~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~t 161 (293)
T 3t15_A 82 KLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVT 161 (293)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEe
Confidence 3578889888 6789999999999999986543222 223457789999999865410 012367999999
Q ss_pred cCCCCCccHHHHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHH
Q psy3540 70 TNHPWDIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIAN 134 (202)
Q Consensus 70 Tn~~~~ld~al~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~ 134 (202)
||+++.+|++++| ||+..++ .|+.++|.+|++.++.. .++++..++..++||+++||..
T Consensus 162 tN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 162 GNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp CSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred cCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 9999999999998 9999887 57999999999988863 3577899999999999999864
No 32
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=115.23 Aligned_cols=78 Identities=24% Similarity=0.479 Sum_probs=72.1
Q ss_pred eecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCC
Q psy3540 89 YIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPV 168 (202)
Q Consensus 89 ~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~i 168 (202)
+-.+||.++|.+||+.++++.++..++|+..||+.|+||||+||+++|++|++.|+++.. .+|
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~-----------------~~I 69 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-----------------VHV 69 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC-----------------SEE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC-----------------CCC
Confidence 456899999999999999999998899999999999999999999999999999998742 279
Q ss_pred cHHHHHHHHHHhCCC
Q psy3540 169 TEKDFREAIARCRKS 183 (202)
Q Consensus 169 t~~df~~Al~~~~Ps 183 (202)
+.+||+.|+++++|.
T Consensus 70 ~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 70 TQEDFEMAVAKVMQK 84 (86)
T ss_dssp CHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHccC
Confidence 999999999999986
No 33
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=112.32 Aligned_cols=76 Identities=26% Similarity=0.540 Sum_probs=69.6
Q ss_pred cCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcH
Q psy3540 91 PLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTE 170 (202)
Q Consensus 91 ~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~ 170 (202)
|+|+.++|.+||+.++++.++.+++|+..||..|+||||+||.++|++|++.|+++.. ..|+.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-----------------~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-----------------VHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----------------SEECH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-----------------CCCCH
Confidence 7899999999999999999988899999999999999999999999999999998742 27999
Q ss_pred HHHHHHHHHhCCC
Q psy3540 171 KDFREAIARCRKS 183 (202)
Q Consensus 171 ~df~~Al~~~~Ps 183 (202)
+||+.|++++..+
T Consensus 64 ~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 64 EDFEMAVAKVMQK 76 (78)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998654
No 34
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.65 E-value=2.6e-17 Score=109.61 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHH
Q psy3540 96 WARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFRE 175 (202)
Q Consensus 96 ~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~ 175 (202)
++|.+||+.+++++++.+++|+..||..|+||||+||.++|++|++.|+++.. ..|+.+||+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-----------------~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------YVILQSDLEE 63 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CCcCHHHHHH
Confidence 47999999999999988899999999999999999999999999999998742 2799999999
Q ss_pred HHHHh-CCCCCHHHHHHH
Q psy3540 176 AIARC-RKSVTAHDLSKY 192 (202)
Q Consensus 176 Al~~~-~Ps~s~~~~~~~ 192 (202)
|+.++ .|+.+.+++..|
T Consensus 64 Al~~v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 64 AYATQVKTDNTVDKFDFY 81 (82)
T ss_dssp HHHTTCC-----------
T ss_pred HHHHHHcCcCChHHHHhh
Confidence 99998 578887777665
No 35
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.43 E-value=1.9e-16 Score=136.66 Aligned_cols=125 Identities=13% Similarity=0.184 Sum_probs=76.7
Q ss_pred HHHHHHHHh---hhCCCeEEEEccccccccccCCCCcchHH---H---------------HHHHHHHHHHhCCCCCCCCC
Q psy3540 3 EVQRTNVPS---NSYRVSTIFIDEVDSLCSMRGSDSEHEAS---R---------------RFKAELLIQMDGLNSSLYED 61 (202)
Q Consensus 3 ~i~~~F~~A---~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~---~---------------~~~~~ll~~ld~~~~~~~~~ 61 (202)
.++++|..| +..+||||||||+|.++++|+....++.. . ++.+.++..++...-. .+
T Consensus 111 ~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~--~~ 188 (456)
T 2c9o_A 111 VLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVE--AG 188 (456)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCC--TT
T ss_pred HHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCC--CC
Confidence 378899999 88999999999999999988643211111 1 2234466666632221 23
Q ss_pred ceEEEEEecCCCCCccHHHHh--cccc--eeeecCCC--HHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHH
Q psy3540 62 KIIMILAATNHPWDIDEAFRR--RFEK--RVYIPLPN--EWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANL 135 (202)
Q Consensus 62 ~~v~viatTn~~~~ld~al~r--rf~~--~i~i~~P~--~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l 135 (202)
+.|+|++|||+++.+|++++| |||. .+++|.|+ ..+|.+|++.++. .|++.++..|+| |+||.++
T Consensus 189 ~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gadl~~l 259 (456)
T 2c9o_A 189 DVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQDILSM 259 (456)
T ss_dssp EEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------------
T ss_pred CEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhHHHHH
Confidence 667788999999999999988 9999 77888885 4778888765442 378999999999 9999999
Q ss_pred HHH
Q psy3540 136 ARD 138 (202)
Q Consensus 136 ~~~ 138 (202)
|..
T Consensus 260 ~~~ 262 (456)
T 2c9o_A 260 MGQ 262 (456)
T ss_dssp ---
T ss_pred Hhh
Confidence 954
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.41 E-value=2.3e-12 Score=107.45 Aligned_cols=143 Identities=17% Similarity=0.120 Sum_probs=107.3
Q ss_pred HHHHHHHHhhh---------CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEec---
Q psy3540 3 EVQRTNVPSNS---------YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAAT--- 70 (202)
Q Consensus 3 ~i~~~F~~A~~---------~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatT--- 70 (202)
.++..|..+.. ..|+||||||+|.+.. ...+.|+..++... .+++++++.
T Consensus 168 ~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~------------~~~~~L~~~le~~~------~~~~ii~t~~~~ 229 (368)
T 3uk6_A 168 EVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI------------ESFSFLNRALESDM------APVLIMATNRGI 229 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH------------HHHHHHHHHTTCTT------CCEEEEEESCSE
T ss_pred HHHHHHHHHHHHhhhhccccccCceEEEhhccccCh------------HHHHHHHHHhhCcC------CCeeeeecccce
Confidence 45555655543 2388999999998842 24567777765533 235555554
Q ss_pred --------CCCCCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy3540 71 --------NHPWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 71 --------n~~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~ 141 (202)
|.++.+++++++||.. +.++.|+.+++..+++..+...... ++..+..++..+.|.+++++.++|+.|..
T Consensus 230 ~~i~~t~~~~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~ 308 (368)
T 3uk6_A 230 TRIRGTSYQSPHGIPIDLLDRLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASL 308 (368)
T ss_dssp EECBTSSCEEETTCCHHHHTTEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred eeeeccCCCCcccCCHHHHhhccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3588999999999977 8999999999999999988653322 34468889999987899999999999998
Q ss_pred HHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 142 MSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 142 ~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
.|..+.. ..|+.+|+.+|+..+.
T Consensus 309 ~A~~~~~-----------------~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 309 VCRKRKG-----------------TEVQVDDIKRVYSLFL 331 (368)
T ss_dssp HHHHTTC-----------------SSBCHHHHHHHHHHSB
T ss_pred HHHHhCC-----------------CCCCHHHHHHHHHHhc
Confidence 8865432 2799999999999854
No 37
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.40 E-value=1.6e-12 Score=105.86 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=100.8
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-----Ccc
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-----DID 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-----~ld 77 (202)
.++.+|..+ .|+||||||+|.++..++. ......+.+.|+..|+... .++++|++||.++ .++
T Consensus 121 ~~~~~~~~~---~~~vl~iDEid~l~~~~~~---~~~~~~~~~~Ll~~l~~~~------~~~~~i~~~~~~~~~~~~~~~ 188 (309)
T 3syl_A 121 KTKEVLKRA---MGGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENNR------DDLVVILAGYADRMENFFQSN 188 (309)
T ss_dssp HHHHHHHHH---TTSEEEEETGGGSCCCC------CCTHHHHHHHHHHHHHCT------TTCEEEEEECHHHHHHHHHHS
T ss_pred HHHHHHHhc---CCCEEEEEChhhhccCCCc---ccccHHHHHHHHHHHhcCC------CCEEEEEeCChHHHHHHHhhC
Confidence 456677766 5789999999999876532 2223567888999998744 3478888888654 357
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHh
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKML-------EGYTGSDIANLARDAAMMSIRRKIM 149 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t-------~g~s~~dl~~l~~~A~~~a~~~~~~ 149 (202)
|++++||+..++|+.|+.+++..|++.++...... ++..+..++... ..-+++++.++++.|...+..+...
T Consensus 189 ~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 189 PGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp TTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999754433 233455566652 2335899999999999888877654
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.39 E-value=4.1e-13 Score=107.93 Aligned_cols=152 Identities=13% Similarity=0.123 Sum_probs=108.0
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH-HH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE-AF 80 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~-al 80 (202)
..++.+|..|....|+||||||+|.+++.+..+. .....++..|...+++.... ..+++||+|||.++.+++ .+
T Consensus 111 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~l~~L~~~~~~~~~~---~~~~~ii~ttn~~~~l~~~~l 185 (272)
T 1d2n_A 111 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP--RFSNLVLQALLVLLKKAPPQ---GRKLLIIGTTSRKDVLQEMEM 185 (272)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT--BCCHHHHHHHHHHTTCCCST---TCEEEEEEEESCHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh--hHHHHHHHHHHHHhcCccCC---CCCEEEEEecCChhhcchhhh
Confidence 3578899999888899999999999987764222 22355677777777776542 367899999999999998 66
Q ss_pred HhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCC----CHHHHHHHHHHHHHHHHHHHHhcCChhHH
Q psy3540 81 RRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGY----TGSDIANLARDAAMMSIRRKIMGQTPAQI 156 (202)
Q Consensus 81 ~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~----s~~dl~~l~~~A~~~a~~~~~~~~~~~~~ 156 (202)
++||+..+++|.++. |.+|...+.....+ ++.++..++..+.|| +..++.++++.|...+-
T Consensus 186 ~~rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~------------ 250 (272)
T 1d2n_A 186 LNAFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDP------------ 250 (272)
T ss_dssp TTTSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCG------------
T ss_pred hcccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhch------------
Confidence 679998888865544 44444444433333 356789999999998 67777777776643221
Q ss_pred hhhhhccCCCCCcHHHHHHHHHHhCCC
Q psy3540 157 KEIKQEDIDLPVTEKDFREAIARCRKS 183 (202)
Q Consensus 157 ~~~~~~~~~~~it~~df~~Al~~~~Ps 183 (202)
....++|..++.....+
T Consensus 251 ----------~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 251 ----------EYRVRKFLALLREEGAS 267 (272)
T ss_dssp ----------GGHHHHHHHHHHHTSCC
T ss_pred ----------HHHHHHHHHHHHHcCCc
Confidence 24567788888777654
No 39
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.28 E-value=3e-11 Score=97.99 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=112.3
Q ss_pred HHHHHHHh-----hhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC----CCCCceEEEEEe----c
Q psy3540 4 VQRTNVPS-----NSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS----LYEDKIIMILAA----T 70 (202)
Q Consensus 4 i~~~F~~A-----~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~----~~~~~~v~viat----T 70 (202)
++.+|..+ +...++||||||+|.+.......+.......+.+.|+..|++..-. .....++++|++ +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~ 179 (310)
T 1ofh_A 100 IRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQV 179 (310)
T ss_dssp HHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSS
T ss_pred HHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCccc
Confidence 55566543 1234789999999999877643333333345678889888874210 001135778888 5
Q ss_pred CCCCCccHHHHhcccceeeecCCCHHHHHHHHHH----Hh---------cCccc-CCcccHHHHHHHc-------cCCCH
Q psy3540 71 NHPWDIDEAFRRRFEKRVYIPLPNEWARYQLLTL----CL---------EGVVI-DVNLDFHKISKML-------EGYTG 129 (202)
Q Consensus 71 n~~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~----~l---------~~~~~-~~~~~~~~la~~t-------~g~s~ 129 (202)
+.+..+++++++||+..++++.|+.+++..|++. ++ .+..+ -++..+..|+..+ ++.++
T Consensus 180 ~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~ 259 (310)
T 1ofh_A 180 ARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGA 259 (310)
T ss_dssp SCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTT
T ss_pred CCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCc
Confidence 6889999999999999999999999999999983 21 11111 1233466777776 26789
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 130 SDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 130 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
+.+.++++.+...+..+.... ......|+.+|+.+++....
T Consensus 260 R~l~~~l~~~~~~~~~~~~~~-----------~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 260 RRLHTVMERLMDKISFSASDM-----------NGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHHHHHHHHSHHHHHHGGGC-----------TTCEEEECHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHhhhcCCccc-----------cCCEEEEeeHHHHHHHHhhh
Confidence 999999998876655332211 01112499999999998764
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.25 E-value=1.1e-11 Score=109.18 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=102.3
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCC---------CCCceEEEEEecCCC
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL---------YEDKIIMILAATNHP 73 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~---------~~~~~v~viatTn~~ 73 (202)
.+...|..|....| |+||||+|.+...+.. ...+.|+..||...... ..-..+++|+|||.+
T Consensus 164 ~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~ 234 (543)
T 3m6a_A 164 RIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNL 234 (543)
T ss_dssp CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSST
T ss_pred HHHHHHHHhhccCC-EEEEhhhhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcc
Confidence 35667888887777 9999999999875422 13466777776543210 001458999999999
Q ss_pred CCccHHHHhcccceeeecCCCHHHHHHHHHHHhcC-----cccC------CcccHHHHHHHcc-CCCHHHHHHHHHHHHH
Q psy3540 74 WDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEG-----VVID------VNLDFHKISKMLE-GYTGSDIANLARDAAM 141 (202)
Q Consensus 74 ~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~-----~~~~------~~~~~~~la~~t~-g~s~~dl~~l~~~A~~ 141 (202)
+.+++++++||+ .|+++.|+.++|..|++.++-. ..+. ++..+..++.... ....++|++.+..++.
T Consensus 235 ~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~ 313 (543)
T 3m6a_A 235 ATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICR 313 (543)
T ss_dssp TTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHH
T ss_pred ccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHH
Confidence 999999999995 7999999999999999998721 1111 1223555555333 3455667666666665
Q ss_pred HHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 142 MSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 142 ~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
.+..+..... .....|+.+|+.+++..-+
T Consensus 314 ~aa~~~~~~~-----------~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 314 KAAKAIVAEE-----------RKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHHTTC-----------CSCCEECTTTTHHHHCSCC
T ss_pred HHHHHHHhcC-----------CcceecCHHHHHHHhCCcc
Confidence 5555443211 1223688899998886543
No 41
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.20 E-value=3.2e-10 Score=93.49 Aligned_cols=139 Identities=16% Similarity=0.118 Sum_probs=100.4
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCC------------CCCceEEEEEecCCCCCccHHHH
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL------------YEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~------------~~~~~v~viatTn~~~~ld~al~ 81 (202)
..+++|||||+|.+.. .....|+..|+...-.. ....++++|++||.+..++++++
T Consensus 105 ~~~~vl~lDEi~~l~~------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~ 172 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSP------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLR 172 (338)
T ss_dssp CTTCEEEEETGGGCCH------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHH
T ss_pred cCCCEEEEechhhcCH------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHH
Confidence 4689999999999842 24556666666543100 00124899999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhh
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIK 160 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~ 160 (202)
+||+..+.++.|+.+++..+++.++...... ++..+..++..+.| +++++.+++..+...+.....
T Consensus 173 ~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~------------ 239 (338)
T 3pfi_A 173 DRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFADVNDE------------ 239 (338)
T ss_dssp TTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHTTC------------
T ss_pred hhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhhcC------------
Confidence 9999999999999999999999998765433 34457788887766 568888888888766543211
Q ss_pred hccCCCCCcHHHHHHHHHHhCC
Q psy3540 161 QEDIDLPVTEKDFREAIARCRK 182 (202)
Q Consensus 161 ~~~~~~~it~~df~~Al~~~~P 182 (202)
..|+.+++..++.....
T Consensus 240 -----~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 240 -----EIITEKRANEALNSLGV 256 (338)
T ss_dssp -----SEECHHHHHHHHHHHTC
T ss_pred -----CccCHHHHHHHHHHhCC
Confidence 14666777766666543
No 42
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.15 E-value=5.9e-10 Score=92.78 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=99.8
Q ss_pred HHHHHHhhhC-CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC---CCccHHH
Q psy3540 5 QRTNVPSNSY-RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP---WDIDEAF 80 (202)
Q Consensus 5 ~~~F~~A~~~-~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~---~~ld~al 80 (202)
..++..+... .|+||+|||+|.+...+ .....+..++..++..... .++.+|++||.+ +.+++.+
T Consensus 119 ~~l~~~l~~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~~~~~~----~~~~~I~~t~~~~~~~~l~~~l 187 (387)
T 2v1u_A 119 ERLVKRLSRLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQELGDR----VWVSLVGITNSLGFVENLEPRV 187 (387)
T ss_dssp HHHHHHHTTSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGGCC---------CEEEEECSCSTTSSSSCHHH
T ss_pred HHHHHHHhccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchhhcCCC----ceEEEEEEECCCchHhhhCHHH
Confidence 3444444433 48999999999996542 1134556666655554311 568899999988 7899999
Q ss_pred Hhcccc-eeeecCCCHHHHHHHHHHHhcC----cccCCcccHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3540 81 RRRFEK-RVYIPLPNEWARYQLLTLCLEG----VVIDVNLDFHKISKMLE---GYTGSDIANLARDAAMMSIRRKIMGQT 152 (202)
Q Consensus 81 ~rrf~~-~i~i~~P~~~~R~~il~~~l~~----~~~~~~~~~~~la~~t~---g~s~~dl~~l~~~A~~~a~~~~~~~~~ 152 (202)
++||.. .+.+++|+.+++..|++..+.. ..++ +..+..++..+. | .+..+.++++.|...+..+..
T Consensus 188 ~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~---- 261 (387)
T 2v1u_A 188 KSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRRE---- 261 (387)
T ss_dssp HTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTC----
T ss_pred HhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCC----
Confidence 999986 9999999999999999998853 2233 334677888877 6 567777888888766643211
Q ss_pred hhHHhhhhhccCCCCCcHHHHHHHHHHh
Q psy3540 153 PAQIKEIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 153 ~~~~~~~~~~~~~~~it~~df~~Al~~~ 180 (202)
..|+.+|+..|+...
T Consensus 262 -------------~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 262 -------------ERVRREHVYSARAEI 276 (387)
T ss_dssp -------------SCBCHHHHHHHHHHH
T ss_pred -------------CCcCHHHHHHHHHHH
Confidence 156777777776655
No 43
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.15 E-value=2.6e-10 Score=97.89 Aligned_cols=134 Identities=15% Similarity=0.172 Sum_probs=98.4
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCC---ccHHHHhccc--ceee
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWD---IDEAFRRRFE--KRVY 89 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~---ld~al~rrf~--~~i~ 89 (202)
.|.||||||+|.+.+++ . ....|+..++.+... +..+||+|.+.|.. +++++++||. ..+.
T Consensus 194 ~~~vL~IDEi~~l~~~~------~----~q~~l~~~l~~l~~~----~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~ 259 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKT------G----VQTELFHTFNELHDS----GKQIVICSDREPQKLSEFQDRLVSRFQMGLVAK 259 (440)
T ss_dssp TCSEEEEECGGGGSSCH------H----HHHHHHHHHHHHHTT----TCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCB
T ss_pred CCCEEEEeCcccccCCh------H----HHHHHHHHHHHHHHC----CCeEEEEECCCHHHHHHHHHHHHhhccCCeEEE
Confidence 79999999999986532 1 123344444443332 34566666665665 8899999996 8999
Q ss_pred ecCCCHHHHHHHHHHHhcC--cccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCC
Q psy3540 90 IPLPNEWARYQLLTLCLEG--VVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLP 167 (202)
Q Consensus 90 i~~P~~~~R~~il~~~l~~--~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 167 (202)
++.|+.++|..||+..+.. ..++++ .+..|+..+.| +++++..++..+...+.... .+
T Consensus 260 l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~------------------~~ 319 (440)
T 2z4s_A 260 LEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYKETTG------------------KE 319 (440)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSS------------------SC
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC------------------CC
Confidence 9999999999999999863 334433 47889999876 88999999999877664321 16
Q ss_pred CcHHHHHHHHHHhCC
Q psy3540 168 VTEKDFREAIARCRK 182 (202)
Q Consensus 168 it~~df~~Al~~~~P 182 (202)
||.+++.++++...+
T Consensus 320 It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 320 VDLKEAILLLKDFIK 334 (440)
T ss_dssp CCHHHHHHHTSTTTC
T ss_pred CCHHHHHHHHHHHhh
Confidence 899999999988764
No 44
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.14 E-value=3.3e-10 Score=103.13 Aligned_cols=172 Identities=15% Similarity=0.134 Sum_probs=115.2
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC-----CCc
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP-----WDI 76 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~-----~~l 76 (202)
+.++.+|..++...|+||||||+|.+++.++..... .. ..+.+..+... ..+.+|++||.+ ..+
T Consensus 265 ~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~---~~----~~~~L~~~l~~----~~~~~I~at~~~~~~~~~~~ 333 (758)
T 1r6b_X 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ---VD----AANLIKPLLSS----GKIRVIGSTTYQEFSNIFEK 333 (758)
T ss_dssp HHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH---HH----HHHHHSSCSSS----CCCEEEEEECHHHHHCCCCC
T ss_pred HHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch---HH----HHHHHHHHHhC----CCeEEEEEeCchHHhhhhhc
Confidence 357888999988889999999999998866432111 11 22333333333 567888999864 368
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHHHHHhcCcc----c-CCcccHHHHHHHccC-----CCHHHHHHHHHHHHHHHHHH
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV----I-DVNLDFHKISKMLEG-----YTGSDIANLARDAAMMSIRR 146 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~----~-~~~~~~~~la~~t~g-----~s~~dl~~l~~~A~~~a~~~ 146 (202)
|+++.|||+ .+.++.|+.++|.+||+.+..... . -.+..+..++..+.| +.+..+..++.+|...+...
T Consensus 334 d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~ 412 (758)
T 1r6b_X 334 DRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM 412 (758)
T ss_dssp TTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHS
T ss_pred CHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcc
Confidence 899999998 799999999999999998875421 1 123346667777665 45667888888876443221
Q ss_pred HHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC--C--CCCHHHHHHHHHHHHH
Q psy3540 147 KIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR--K--SVTAHDLSKYDSWMNE 198 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~--P--s~s~~~~~~~~~~~~~ 198 (202)
.. ......|+.+|+..++.... | .+++++...+....+.
T Consensus 413 --~~-----------~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~ 455 (758)
T 1r6b_X 413 --PV-----------SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDR 455 (758)
T ss_dssp --SS-----------CCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHH
T ss_pred --cc-----------cccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHH
Confidence 00 00123689999999999875 2 4455665555554443
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.14 E-value=4.6e-10 Score=86.93 Aligned_cols=133 Identities=17% Similarity=0.119 Sum_probs=99.3
Q ss_pred HHHHHHHhh----hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 4 VQRTNVPSN----SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 4 i~~~F~~A~----~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++.++..+. ...|.+|+|||+|.+.. ...+.|+..++... .++.+|++||.++.++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~vlviDe~~~l~~------------~~~~~l~~~l~~~~------~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 111 TRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------HSFNALLKTLEEPP------EHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp HHHHHHSCCCSCSSSSSEEEEEETGGGSCH------------HHHHHHHHHHHSCC------TTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHhhhchhcCCceEEEEECcccccH------------HHHHHHHHHHhcCC------CceEEEEEeCChHhCCHH
Confidence 445555543 23589999999999732 24567777777643 347888999999999999
Q ss_pred HHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhh
Q psy3540 80 FRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKE 158 (202)
Q Consensus 80 l~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~ 158 (202)
+++|+ ..++++.|+.++..++++.++...... ++..+..++..+.| +++.+.++++.|...+ .
T Consensus 173 l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~~-------~------- 236 (250)
T 1njg_A 173 ILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIASG-------D------- 236 (250)
T ss_dssp HHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHTTT-------T-------
T ss_pred HHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcc-------C-------
Confidence 99986 689999999999999999988643322 23457889999988 8899999988774221 0
Q ss_pred hhhccCCCCCcHHHHHHHH
Q psy3540 159 IKQEDIDLPVTEKDFREAI 177 (202)
Q Consensus 159 ~~~~~~~~~it~~df~~Al 177 (202)
..||.+|+.+++
T Consensus 237 -------~~i~~~~v~~~~ 248 (250)
T 1njg_A 237 -------GQVSTQAVSAML 248 (250)
T ss_dssp -------SSBCHHHHHHHS
T ss_pred -------ceecHHHHHHHh
Confidence 168999988875
No 46
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.13 E-value=3.9e-10 Score=92.23 Aligned_cols=117 Identities=16% Similarity=0.060 Sum_probs=86.0
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCC-------CCceEEEEEecCCCCCccHHHH
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLY-------EDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~-------~~~~v~viatTn~~~~ld~al~ 81 (202)
..+++|||||+|.+... ....|+..++... +... ...++.+|++||.+..+++++.
T Consensus 89 ~~~~~l~lDEi~~l~~~------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~ 156 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQ------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLL 156 (324)
T ss_dssp CTTCEEEETTTTSCCHH------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTT
T ss_pred cCCCEEEEECCcccccc------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHH
Confidence 46889999999988531 2344555555432 0000 0124789999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
+||+..+.++.|+.+++..+++.++...... ++..+..|+..+.|+ ++.+.+++..+...+
T Consensus 157 ~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 157 SRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRVRDFA 218 (324)
T ss_dssp TTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHHTTTS
T ss_pred hcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999998754433 334578899998774 578888888775544
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.10 E-value=3.8e-10 Score=87.89 Aligned_cols=132 Identities=11% Similarity=0.035 Sum_probs=92.5
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceE-EEEEecCCCC---CccHHHHhccc--ce
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKII-MILAATNHPW---DIDEAFRRRFE--KR 87 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v-~viatTn~~~---~ld~al~rrf~--~~ 87 (202)
..|.+|+|||+|.+.... .....|+..++..... ..+ +|++++..+. .+++++.+||. ..
T Consensus 103 ~~~~vliiDe~~~~~~~~----------~~~~~l~~~l~~~~~~----~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~ 168 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHP----------LWEEAIFDLYNRVAEQ----KRGSLIVSASASPMEAGFVLPDLVSRMHWGLT 168 (242)
T ss_dssp GGSSEEEEETGGGGTTCH----------HHHHHHHHHHHHHHHH----CSCEEEEEESSCTTTTTCCCHHHHHHHHHSEE
T ss_pred cCCCEEEEeccccccCCH----------HHHHHHHHHHHHHHHc----CCCeEEEEcCCCHHHHHHhhhhhhhHhhcCce
Confidence 358899999999985421 0123344444443322 223 5555555554 56689998886 89
Q ss_pred eeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCC
Q psy3540 88 VYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL 166 (202)
Q Consensus 88 i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~ 166 (202)
++++.|+.+++.++++.++...... ++..+..++..+.| +.+++.++++.+...+.... .
T Consensus 169 i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~------------------~ 229 (242)
T 3bos_A 169 YQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ------------------R 229 (242)
T ss_dssp EECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT------------------C
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC------------------C
Confidence 9999999999999999998643322 24457788888876 88999999998887764332 1
Q ss_pred CCcHHHHHHHHH
Q psy3540 167 PVTEKDFREAIA 178 (202)
Q Consensus 167 ~it~~df~~Al~ 178 (202)
.||.+++.+++.
T Consensus 230 ~It~~~v~~~l~ 241 (242)
T 3bos_A 230 KLTIPFVKEMLR 241 (242)
T ss_dssp CCCHHHHHHHHT
T ss_pred CCcHHHHHHHhh
Confidence 699999998874
No 48
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.10 E-value=8.3e-10 Score=84.53 Aligned_cols=123 Identities=19% Similarity=0.092 Sum_probs=92.0
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCC
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLP 93 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P 93 (202)
..|.||+|||+|.+... ..+.|+..++... .++.+|++||.++.+++++.+||. .+.++.|
T Consensus 101 ~~~~vliiDe~~~l~~~------------~~~~l~~~l~~~~------~~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~ 161 (226)
T 2chg_A 101 APFKIIFLDEADALTAD------------AQAALRRTMEMYS------KSCRFILSCNYVSRIIEPIQSRCA-VFRFKPV 161 (226)
T ss_dssp CSCEEEEEETGGGSCHH------------HHHHHHHHHHHTT------TTEEEEEEESCGGGSCHHHHTTSE-EEECCCC
T ss_pred cCceEEEEeChhhcCHH------------HHHHHHHHHHhcC------CCCeEEEEeCChhhcCHHHHHhCc-eeecCCC
Confidence 56899999999998431 2445666666543 346788899999999999999998 8999999
Q ss_pred CHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHH
Q psy3540 94 NEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKD 172 (202)
Q Consensus 94 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~d 172 (202)
+.++...+++.++...... ++..+..++..+.| ++..+.+++..+...+ ..|+.+|
T Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~----------------------~~I~~~~ 218 (226)
T 2chg_A 162 PKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG----------------------EVVDADT 218 (226)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC----------------------SCBCHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC----------------------ceecHHH
Confidence 9999999999988643322 23457778888766 6666666666654332 1699999
Q ss_pred HHHHHH
Q psy3540 173 FREAIA 178 (202)
Q Consensus 173 f~~Al~ 178 (202)
+.+++.
T Consensus 219 v~~~~~ 224 (226)
T 2chg_A 219 IYQITA 224 (226)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
No 49
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.99 E-value=1.2e-08 Score=84.99 Aligned_cols=141 Identities=8% Similarity=0.003 Sum_probs=97.4
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC---CCccHHHHhcccc-eee
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP---WDIDEAFRRRFEK-RVY 89 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~---~~ld~al~rrf~~-~i~ 89 (202)
..|.||+|||+|.+- ......|+..++..... ...++.+|++||.+ +.+++.+.+||.. .+.
T Consensus 124 ~~~~vlilDE~~~l~------------~~~~~~L~~~~~~~~~~--~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~ 189 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLA------------PDILSTFIRLGQEADKL--GAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIR 189 (389)
T ss_dssp TCCEEEEEETGGGSC------------HHHHHHHHHHTTCHHHH--SSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEE
T ss_pred CCeEEEEEECccccc------------hHHHHHHHHHHHhCCCC--CcCCEEEEEEECCchHHHHhCHHhhhcCCCceEE
Confidence 459999999999981 23466677766554320 01357888999988 7789999888876 899
Q ss_pred ecCCCHHHHHHHHHHHhcCc---ccCCcccHHHHHHHccCC--------CHHHHHHHHHHHHHHHHHHHHhcCChhHHhh
Q psy3540 90 IPLPNEWARYQLLTLCLEGV---VIDVNLDFHKISKMLEGY--------TGSDIANLARDAAMMSIRRKIMGQTPAQIKE 158 (202)
Q Consensus 90 i~~P~~~~R~~il~~~l~~~---~~~~~~~~~~la~~t~g~--------s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~ 158 (202)
+++++.++...+++..+... ..-++..+..++..+.+. .+..+.++++.|...+..+..
T Consensus 190 ~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~---------- 259 (389)
T 1fnn_A 190 FSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGR---------- 259 (389)
T ss_dssp CCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred eCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCC----------
Confidence 99999999999999988541 112344678888988422 567788888888776654321
Q ss_pred hhhccCCCCCcHHHHHHHHHHhCCCCC
Q psy3540 159 IKQEDIDLPVTEKDFREAIARCRKSVT 185 (202)
Q Consensus 159 ~~~~~~~~~it~~df~~Al~~~~Ps~s 185 (202)
..|+.+|+..++....+...
T Consensus 260 -------~~i~~~~v~~~~~~~~~~~~ 279 (389)
T 1fnn_A 260 -------KHIAPEDVRKSSKEVLFGIS 279 (389)
T ss_dssp -------SSCCHHHHHHHHHHHSCCCC
T ss_pred -------CCcCHHHHHHHHHHHhhhhH
Confidence 14556666666655554433
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.95 E-value=1.7e-08 Score=83.23 Aligned_cols=137 Identities=14% Similarity=0.096 Sum_probs=91.9
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhC----CCCCC---CCCceEEEEEecCCCC-CccHHHHhcccc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG----LNSSL---YEDKIIMILAATNHPW-DIDEAFRRRFEK 86 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~----~~~~~---~~~~~v~viatTn~~~-~ld~al~rrf~~ 86 (202)
.++||||||+|.+.. ...+.|+..|+. +.... ....++++|+|||..+ .+++++++||+.
T Consensus 144 ~~~vl~iDEi~~l~~------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~ 211 (350)
T 1g8p_A 144 NRGYLYIDECNLLED------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGL 211 (350)
T ss_dssp TTEEEEETTGGGSCH------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSE
T ss_pred CCCEEEEeChhhCCH------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcce
Confidence 378999999998743 134566665554 11110 0012689999999744 899999999999
Q ss_pred eeeecCC-CHHHHHHHHHHHhc-------------------------------CcccCCcccHHHHHHHccC---CCHHH
Q psy3540 87 RVYIPLP-NEWARYQLLTLCLE-------------------------------GVVIDVNLDFHKISKMLEG---YTGSD 131 (202)
Q Consensus 87 ~i~i~~P-~~~~R~~il~~~l~-------------------------------~~~~~~~~~~~~la~~t~g---~s~~d 131 (202)
.++++.| +.+.|.+|++..+. +..++ +..+..|+....| -+.+.
T Consensus 212 ~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~ 290 (350)
T 1g8p_A 212 SVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRG 290 (350)
T ss_dssp EEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccH
Confidence 9999999 68888888876321 11222 2234455555443 26688
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 132 IANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 132 l~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
+.++++.|...|..+.. ..|+.+|+.+|+..+-
T Consensus 291 ~~~ll~~a~~~A~~~~~-----------------~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 291 ELTLLRSARALAALEGA-----------------TAVGRDHLKRVATMAL 323 (350)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------SBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-----------------CcCCHHHHHHHHHHHH
Confidence 88888888777754422 1589999999988753
No 51
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.94 E-value=1.1e-08 Score=83.99 Aligned_cols=136 Identities=18% Similarity=0.125 Sum_probs=90.8
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC-----CCCCceEEEEEecCCCC-----CccHHHHhcccc
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS-----LYEDKIIMILAATNHPW-----DIDEAFRRRFEK 86 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~-----~~~~~~v~viatTn~~~-----~ld~al~rrf~~ 86 (202)
+|+||||+|.+.+ ...+.|+..|+.-.-. .....+++||+|+|..+ .+++++++||+.
T Consensus 111 ~vl~iDEi~~~~~------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~ 178 (331)
T 2r44_A 111 NFILADEVNRSPA------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMM 178 (331)
T ss_dssp SEEEEETGGGSCH------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSE
T ss_pred cEEEEEccccCCH------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeE
Confidence 7999999998632 2355666666642100 00124577888888443 389999999999
Q ss_pred eeeecCCCHHHHHHHHHHHhcCcccC-----------------------CcccHHHHHHHc-------------------
Q psy3540 87 RVYIPLPNEWARYQLLTLCLEGVVID-----------------------VNLDFHKISKML------------------- 124 (202)
Q Consensus 87 ~i~i~~P~~~~R~~il~~~l~~~~~~-----------------------~~~~~~~la~~t------------------- 124 (202)
.+.++.|+.++|.+||+..+...... ++.-+..++...
T Consensus 179 ~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~ 258 (331)
T 2r44_A 179 KIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYIL 258 (331)
T ss_dssp EEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEE
T ss_pred EEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccc
Confidence 99999999999999999988642110 111133333321
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 125 EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 125 ~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
.|.|++.+..+++.|...|..... ..|+.+|+.+++..+-
T Consensus 259 ~~~s~R~~~~ll~~a~a~A~l~g~-----------------~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 259 YGASTRAAINLNRVAKAMAFFNNR-----------------DYVLPEDIKEVAYDIL 298 (331)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHTTC-----------------SBCCHHHHHHHHHHHH
T ss_pred cCcChhHHHHHHHHHHHHHHHcCC-----------------CCCCHHHHHHHHHHHh
Confidence 256888888888887766654322 1589999999888754
No 52
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.94 E-value=1.6e-08 Score=83.88 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=88.0
Q ss_pred HHHHHHhhhCC-CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC---CCccHHH
Q psy3540 5 QRTNVPSNSYR-VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP---WDIDEAF 80 (202)
Q Consensus 5 ~~~F~~A~~~~-P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~---~~ld~al 80 (202)
+.++....... |+||+|||+|.+..... ..++..|+..++.+.. .++.+|++||.+ +.+++.+
T Consensus 117 ~~l~~~l~~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~~~~-----~~~~~I~~~~~~~~~~~~~~~~ 183 (386)
T 2qby_A 117 RRLVKAVRDYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSEVNK-----SKISFIGITNDVKFVDLLDPRV 183 (386)
T ss_dssp HHHHHHHHTCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHSCCC-------EEEEEEESCGGGGGGCTTHH
T ss_pred HHHHHHHhccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhhcCC-----CeEEEEEEECCCChHhhhCHHH
Confidence 44444444444 99999999999975431 1246677777776622 568889999987 5788888
Q ss_pred Hhccc-ceeeecCCCHHHHHHHHHHHhcC----cccCCcccHHHHHHHcc---CCCHHHHHHHHHHHHHHHHH
Q psy3540 81 RRRFE-KRVYIPLPNEWARYQLLTLCLEG----VVIDVNLDFHKISKMLE---GYTGSDIANLARDAAMMSIR 145 (202)
Q Consensus 81 ~rrf~-~~i~i~~P~~~~R~~il~~~l~~----~~~~~~~~~~~la~~t~---g~s~~dl~~l~~~A~~~a~~ 145 (202)
.+||. ..+.+++|+.++..++++..+.. ..+ .+..+..++..+. | ++..+.++|..|...+..
T Consensus 184 ~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 184 KSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL-PDNVIKLCAALAAREHG-DARRALDLLRVSGEIAER 254 (386)
T ss_dssp HHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS-CHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHH
T ss_pred hccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHh
Confidence 88886 49999999999999999987753 222 2334666777776 5 456666788888766543
No 53
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.92 E-value=2.4e-09 Score=89.39 Aligned_cols=146 Identities=13% Similarity=0.139 Sum_probs=96.3
Q ss_pred HHHHHHHHh----hhCCCeEEEEccccccccccCCCC--cchHHHHHHHHHHHHHhCCCCCC-------CCCceEEEEEe
Q psy3540 3 EVQRTNVPS----NSYRVSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSL-------YEDKIIMILAA 69 (202)
Q Consensus 3 ~i~~~F~~A----~~~~P~Ii~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~~-------~~~~~v~viat 69 (202)
.++.+|..+ ....|+||||||+|.+.+.+.... ......++.+.||..|++..... .....+++|+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~t 179 (363)
T 3hws_A 100 IIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT 179 (363)
T ss_dssp HHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCT
T ss_pred HHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEEC
Confidence 456677766 445789999999999988765432 12223458999999999542110 00112344444
Q ss_pred cCC--------C----------CC-----------------------------------ccHHHHhcccceeeecCCCHH
Q psy3540 70 TNH--------P----------WD-----------------------------------IDEAFRRRFEKRVYIPLPNEW 96 (202)
Q Consensus 70 Tn~--------~----------~~-----------------------------------ld~al~rrf~~~i~i~~P~~~ 96 (202)
||. . .. +.|+++.||+..+.+++|+.+
T Consensus 180 sn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~ 259 (363)
T 3hws_A 180 SKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEE 259 (363)
T ss_dssp TSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHH
T ss_pred CCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHH
Confidence 444 1 11 789999999999999999999
Q ss_pred HHHHHHHH----HhcC-------cccC---CcccHHHHHH--HccCCCHHHHHHHHHHHHHHHHHHHH
Q psy3540 97 ARYQLLTL----CLEG-------VVID---VNLDFHKISK--MLEGYTGSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 97 ~R~~il~~----~l~~-------~~~~---~~~~~~~la~--~t~g~s~~dl~~l~~~A~~~a~~~~~ 148 (202)
.+.+|+.. ++.. .... ++.-+..|+. ....+.+++|+++++++...++.+..
T Consensus 260 ~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~ 327 (363)
T 3hws_A 260 ALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLP 327 (363)
T ss_dssp HHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcc
Confidence 99999986 3221 1111 2334667775 34567789999999999988887653
No 54
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.89 E-value=2.6e-08 Score=82.98 Aligned_cols=139 Identities=18% Similarity=0.157 Sum_probs=93.2
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHH-HHHHHHHHhCCCCCCCCCceEEEEEecCCC---CCccHH
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRF-KAELLIQMDGLNSSLYEDKIIMILAATNHP---WDIDEA 79 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~-~~~ll~~ld~~~~~~~~~~~v~viatTn~~---~~ld~a 79 (202)
+..++..+....+ ||+|||+|.+...+. . .. +..|+... .++.+|++||.+ +.++++
T Consensus 123 ~~~l~~~l~~~~~-vlilDEi~~l~~~~~----~----~~~l~~l~~~~----------~~~~iI~~t~~~~~~~~l~~~ 183 (384)
T 2qby_B 123 IDKIKNGTRNIRA-IIYLDEVDTLVKRRG----G----DIVLYQLLRSD----------ANISVIMISNDINVRDYMEPR 183 (384)
T ss_dssp HHHHHHHHSSSCE-EEEEETTHHHHHSTT----S----HHHHHHHHTSS----------SCEEEEEECSSTTTTTTSCHH
T ss_pred HHHHHHHhccCCC-EEEEECHHHhccCCC----C----ceeHHHHhcCC----------cceEEEEEECCCchHhhhCHH
Confidence 3444444544444 999999999965321 1 12 33333221 247888999987 789999
Q ss_pred HHhcccceeeecCCCHHHHHHHHHHHhcC----cccCCcccHHHHHHHccCC--CHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy3540 80 FRRRFEKRVYIPLPNEWARYQLLTLCLEG----VVIDVNLDFHKISKMLEGY--TGSDIANLARDAAMMSIRRKIMGQTP 153 (202)
Q Consensus 80 l~rrf~~~i~i~~P~~~~R~~il~~~l~~----~~~~~~~~~~~la~~t~g~--s~~dl~~l~~~A~~~a~~~~~~~~~~ 153 (202)
+++||...+.+++|+.++...|++..+.. ..++ +..+..++..+.+. ++..+.++++.|...|. +
T Consensus 184 l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~-----~--- 254 (384)
T 2qby_B 184 VLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAISAKEHGDARKAVNLLFRAAQLAS-----G--- 254 (384)
T ss_dssp HHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-----S---
T ss_pred HHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-----C---
Confidence 99999889999999999999999998853 2233 33467788887622 34556667777765543 1
Q ss_pred hHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 154 AQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 154 ~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
...|+.+|+..++....
T Consensus 255 -----------~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 255 -----------GGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp -----------SSCCCHHHHHHHHHHHH
T ss_pred -----------CCccCHHHHHHHHHHHh
Confidence 11577777777777654
No 55
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.89 E-value=5e-09 Score=90.04 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=97.4
Q ss_pred hHHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEec--CCCCC
Q psy3540 2 REVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAAT--NHPWD 75 (202)
Q Consensus 2 k~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatT--n~~~~ 75 (202)
+.++.+|..|.. ..++||||||+|.+... ..+.|+..++. ..+++|++| |....
T Consensus 89 ~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~LL~~le~--------~~v~lI~att~n~~~~ 148 (447)
T 3pvs_A 89 KEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAFLPHIED--------GTITFIGATTENPSFE 148 (447)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT--------TSCEEEEEESSCGGGS
T ss_pred HHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHHHHHHhc--------CceEEEecCCCCcccc
Confidence 346777777753 46899999999998432 12446666665 224555555 44468
Q ss_pred ccHHHHhcccceeeecCCCHHHHHHHHHHHhcCc-------cc-CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Q psy3540 76 IDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGV-------VI-DVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRK 147 (202)
Q Consensus 76 ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~-------~~-~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~ 147 (202)
+++++++|+. ++.++.|+.+++..+++.++... .. -++..+..|+..+.| +.+.+.++++.+...+....
T Consensus 149 l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~~ 226 (447)
T 3pvs_A 149 LNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEVDD 226 (447)
T ss_dssp SCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBCT
T ss_pred cCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhccccc
Confidence 9999999987 77899999999999999998652 11 123457888888766 67778888887765442100
Q ss_pred HhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhCCCC
Q psy3540 148 IMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSV 184 (202)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~ 184 (202)
.....||.+++.+++....+..
T Consensus 227 ---------------~~~~~It~e~v~~~l~~~~~~~ 248 (447)
T 3pvs_A 227 ---------------SGKRVLKPELLTEIAGERSARF 248 (447)
T ss_dssp ---------------TSCEECCHHHHHHHHTCCCCC-
T ss_pred ---------------CCCCccCHHHHHHHHhhhhhcc
Confidence 0112588888888887765543
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.88 E-value=9.1e-09 Score=83.52 Aligned_cols=125 Identities=11% Similarity=0.094 Sum_probs=92.4
Q ss_pred hhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCC-----CCceEEEEEecCC--------------
Q psy3540 12 NSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY-----EDKIIMILAATNH-------------- 72 (202)
Q Consensus 12 ~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~-----~~~~v~viatTn~-------------- 72 (202)
+...++||||||+|.+.. .+.+.|+..|+.-.-... .-.++++|+|||.
T Consensus 116 ~~~~~~vl~lDEi~~l~~------------~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~ 183 (311)
T 4fcw_A 116 RRRPYSVILFDAIEKAHP------------DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWP 183 (311)
T ss_dssp HHCSSEEEEEETGGGSCH------------HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCC
T ss_pred HhCCCeEEEEeChhhcCH------------HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhccccc
Confidence 344459999999998732 356677777765331100 0135779999998
Q ss_pred ------------CCCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcc---------cC-CcccHHHHHHHcc--CCC
Q psy3540 73 ------------PWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV---------ID-VNLDFHKISKMLE--GYT 128 (202)
Q Consensus 73 ------------~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~---------~~-~~~~~~~la~~t~--g~s 128 (202)
...+++++++||+..+.+++|+.+++..|++.++.... .. ++..+..|+...- .++
T Consensus 184 ~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn 263 (311)
T 4fcw_A 184 YERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFG 263 (311)
T ss_dssp SSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTB
T ss_pred HHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCC
Confidence 55788999999999999999999999999999886421 11 2334677777665 678
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3540 129 GSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 129 ~~dl~~l~~~A~~~a~~~~~ 148 (202)
+++|+++++++...++.+..
T Consensus 264 ~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 264 ARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp TTTHHHHHHHHTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 99999999999998877654
No 57
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.88 E-value=1.7e-08 Score=82.80 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=79.9
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC---CccHHHHhccc--ceee
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW---DIDEAFRRRFE--KRVY 89 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~---~ld~al~rrf~--~~i~ 89 (202)
.|+||||||+|.+.+++ . ....|+..++.+... ...+|+++++.|. .+++++++||. ..++
T Consensus 98 ~~~vL~iDEi~~l~~~~------~----~~~~l~~~l~~~~~~----~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~ 163 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKE------R----TQIEFFHIFNTLYLL----EKQIILASDRHPQKLDGVSDRLVSRFEGGILVE 163 (324)
T ss_dssp TCSEEEEECGGGGTTCH------H----HHHHHHHHHHHHHHT----TCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEE
T ss_pred CCCEEEEcCcccccCCh------H----HHHHHHHHHHHHHHC----CCeEEEEecCChHHHHHhhhHhhhcccCceEEE
Confidence 48999999999986532 1 122333344333322 3467777877776 68999999996 6789
Q ss_pred ecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 90 IPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 90 i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
+++ +.++|..|++.++....+. ++..+..|+..+ | +.+++..++..+...
T Consensus 164 l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred eCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 998 9999999999998643332 244578899999 4 778888888887655
No 58
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.81 E-value=2.2e-08 Score=86.48 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=84.2
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-----Cc
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-----DI 76 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-----~l 76 (202)
+.++.+|..++...|+||||| + . . ...+.|+..|. . ..+.+|++||.++ .+
T Consensus 254 ~~~~~~~~~~~~~~~~iLfiD------~---~---~----~a~~~L~~~L~----~----g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 254 DRLKKVMDEIRQAGNIILFID------A---A---I----DASNILKPSLA----R----GELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp TTHHHHHHHHHTCCCCEEEEC------C------------------CCCTT----S----SSCEEEEECCTTTTHHHHTT
T ss_pred HHHHHHHHHHHhcCCeEEEEe------C---c---h----hHHHHHHHhhc----C----CCEEEEecCCHHHHHHHhhc
Confidence 357889999998899999999 1 1 0 12233333232 2 4688999999987 79
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHHHHHhcCcc----cC-CcccHHHHHHHccCCC-----HHHHHHHHHHHHHHHH
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV----ID-VNLDFHKISKMLEGYT-----GSDIANLARDAAMMSI 144 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~----~~-~~~~~~~la~~t~g~s-----~~dl~~l~~~A~~~a~ 144 (202)
|++++|||. .+.|+.|+.+++..||+.++.... .. ++..+..++..+.+|. +.....++..|...+.
T Consensus 310 ~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~ 386 (468)
T 3pxg_A 310 DAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVR 386 (468)
T ss_dssp CSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHH
Confidence 999999998 599999999999999999886632 11 3445777887776665 4477788888775443
No 59
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.76 E-value=3.7e-07 Score=75.31 Aligned_cols=137 Identities=14% Similarity=0.120 Sum_probs=96.0
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-------CCCC-----CCceEEEEEecCCCCCccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-------SSLY-----EDKIIMILAATNHPWDIDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-------~~~~-----~~~~v~viatTn~~~~ld~al~r 82 (202)
.+.|+||||++.+.+. +...|+..+.... +... .-..+.++++|+.+..|++.+++
T Consensus 102 ~~~v~~iDE~~~l~~~------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s 169 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKA------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS 169 (334)
T ss_dssp TTCEEEEETGGGCCHH------------HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT
T ss_pred CCCEEEEcchhhcCHH------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH
Confidence 5789999999998531 1223333333221 0000 00246778899999999999999
Q ss_pred cccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhh
Q psy3540 83 RFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQ 161 (202)
Q Consensus 83 rf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~ 161 (202)
||...+.+++|+.++..+|++......... .+..+..||..+.| +++++..+++.+...|..+..
T Consensus 170 R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~~~~------------- 235 (334)
T 1in4_A 170 RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVKA------------- 235 (334)
T ss_dssp TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCC-------------
Confidence 999999999999999999999887643332 23357889999988 568888999888776654321
Q ss_pred ccCCCCCcHHHHHHHHHHhC
Q psy3540 162 EDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 162 ~~~~~~it~~df~~Al~~~~ 181 (202)
..||.+++.+|+....
T Consensus 236 ----~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 236 ----DRINTDIVLKTMEVLN 251 (334)
T ss_dssp ----SSBCHHHHHHHHHHHT
T ss_pred ----CCcCHHHHHHHHHHhC
Confidence 1577777777777764
No 60
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.76 E-value=1.3e-07 Score=78.53 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=90.0
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.++.++..+.. ..+.||+|||+|.+.. ...+.|+..++... ..+++|++|+.+..+.+
T Consensus 103 ~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~Ll~~le~~~------~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 103 DTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------HSFNALLKTLEEPP------EHVKFLLATTDPQKLPV 164 (373)
T ss_dssp CHHHHHHHTTSCCSSSSSEEEEEECGGGSCH------------HHHHHHHHHHHSCC------SSEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHhhccccCCeEEEEEECcchhcH------------HHHHHHHHHHhcCC------CceEEEEEeCChHhCcH
Confidence 35666666653 3478999999999832 23567787777643 34788888899999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~ 141 (202)
++++|+ ..+.++.|+.++...+++.++...+.. ++..+..++..+.| ++.++.++++.+..
T Consensus 165 ~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 165 TILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIA 226 (373)
T ss_dssp HHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHHHHHHH
T ss_pred HHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 999987 789999999999999999988644332 23347789999977 77888888877653
No 61
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.75 E-value=1.5e-08 Score=93.49 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=82.0
Q ss_pred HHHHHHHHhhhC-CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC----Ccc
Q psy3540 3 EVQRTNVPSNSY-RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW----DID 77 (202)
Q Consensus 3 ~i~~~F~~A~~~-~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~----~ld 77 (202)
.++.+|..++.. .|+||||||+|.+.+.+...+. ..+.+.|...+.. ..+.+|++||.++ .+|
T Consensus 250 ~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~----~~~~~~L~~~l~~--------~~i~~I~at~~~~~~~~~~d 317 (854)
T 1qvr_A 250 RLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA----VDAGNMLKPALAR--------GELRLIGATTLDEYREIEKD 317 (854)
T ss_dssp HHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHHT--------TCCCEEEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch----HHHHHHHHHHHhC--------CCeEEEEecCchHHhhhccC
Confidence 578889888875 7999999999999876543221 1233444444432 3467889999875 479
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-----CcccHHHHHHHc-----cCCCHHHHHHHHHHHHHHHH
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-----VNLDFHKISKML-----EGYTGSDIANLARDAAMMSI 144 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t-----~g~s~~dl~~l~~~A~~~a~ 144 (202)
++++|||+. +.++.|+.+++..||+.++...... .+..+..++..+ .+|.+.....++.+|...+.
T Consensus 318 ~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~ 393 (854)
T 1qvr_A 318 PALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLR 393 (854)
T ss_dssp TTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHH
Confidence 999999986 9999999999999999887643111 233455666655 45667788888887765554
No 62
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.74 E-value=6.8e-09 Score=77.54 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=58.9
Q ss_pred HHHHHHHHh-hhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-----Cc
Q psy3540 3 EVQRTNVPS-NSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-----DI 76 (202)
Q Consensus 3 ~i~~~F~~A-~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-----~l 76 (202)
.++.+|..+ +...|+||+|||+|.+...+....... +.+.|...++. .++.+|++||.++ .+
T Consensus 102 ~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~----~~~~l~~~~~~--------~~~~~i~~~~~~~~~~~~~~ 169 (195)
T 1jbk_A 102 RLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD----AGNMLKPALAR--------GELHCVGATTLDEYRQYIEK 169 (195)
T ss_dssp HHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC----CHHHHHHHHHT--------TSCCEEEEECHHHHHHHTTT
T ss_pred HHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH----HHHHHHHhhcc--------CCeEEEEeCCHHHHHHHHhc
Confidence 456666655 345689999999999986553222221 12223333322 3467888998876 78
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHH
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLL 102 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il 102 (202)
++++++||+ .++++.|+.++|.+||
T Consensus 170 ~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 170 DAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred CHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 999999998 6999999999998875
No 63
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.73 E-value=7.8e-10 Score=94.68 Aligned_cols=87 Identities=10% Similarity=0.026 Sum_probs=17.6
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEe-cCCCCCccHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAA-TNHPWDIDEAF 80 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viat-Tn~~~~ld~al 80 (202)
+.++.+|..|....| +||+|.+.... ......+++++||.+||++.+. ..| +++ ||+|+.||+||
T Consensus 98 ~~lr~lf~~a~~~~~----~De~d~~~~~~----~~~~e~rvl~~LL~~~dg~~~~----~~v--~a~~TN~~~~ld~aL 163 (444)
T 1g41_A 98 SIIRDLTDSAMKLVR----QQEIAKNRARA----EDVAEERILDALLPPAKNQWGE----VEN--HDSHSSTRQAFRKKL 163 (444)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHSCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHhcch----hhhhhhhhccc----hhhHHHHHHHHHHHHhhccccc----ccc--ccccccCHHHHHHHH
Confidence 367888998887544 89988875432 3345679999999999999775 333 455 99999999999
Q ss_pred Hh--cccceeeecCCCHH-HHHHHH
Q psy3540 81 RR--RFEKRVYIPLPNEW-ARYQLL 102 (202)
Q Consensus 81 ~r--rf~~~i~i~~P~~~-~R~~il 102 (202)
+| |||+.|++++|+.. .|.+||
T Consensus 164 ~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 164 REGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -------------------------
T ss_pred HcCCCcceEEEEcCCCCccchhhhh
Confidence 99 99999999999988 788876
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.73 E-value=3.8e-08 Score=89.63 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=85.0
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-----Cc
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-----DI 76 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-----~l 76 (202)
++++.+|..+....|+||||| + . ....+.|+..|+ . ..+.+|++||..+ .+
T Consensus 254 ~~l~~~~~~~~~~~~~iLfiD------~---~-------~~~~~~L~~~l~----~----~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 254 DRLKKVMDEIRQAGNIILFID------A---A-------IDASNILKPSLA----R----GELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp TTHHHHHHHHHTCCCCEEEEC------C------------------CCCTT----S----SSCEEEEECCTTTTHHHHTT
T ss_pred HHHHHHHHHHHhcCCEEEEEc------C---c-------hhHHHHHHHHHh----c----CCEEEEeCCChHHHHHHhhc
Confidence 368899999999999999999 1 1 012233333332 2 5688999999988 79
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-----CcccHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHH
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-----VNLDFHKISKML-----EGYTGSDIANLARDAAMMSIRR 146 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t-----~g~s~~dl~~l~~~A~~~a~~~ 146 (202)
|++++||| ..+.|+.|+.+++..||+.++...... .+..+..++..+ +++.+.....++..|+..+..+
T Consensus 310 d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 310 DAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp CSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 99999999 569999999999999999888664322 233355566554 4567788888888887655433
No 65
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.72 E-value=9.6e-09 Score=91.25 Aligned_cols=138 Identities=18% Similarity=0.122 Sum_probs=92.3
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCC-------CCCCCceEEEEEecCCCC-------------C
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNS-------SLYEDKIIMILAATNHPW-------------D 75 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~-------~~~~~~~v~viatTn~~~-------------~ 75 (202)
.+|+||||+|.+.. ...+.|+..|+.-.- ....+.++.||||||.++ .
T Consensus 392 ~gil~IDEid~l~~------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~ 459 (595)
T 3f9v_A 392 GGIAVIDEIDKMRD------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNIN 459 (595)
T ss_dssp SSEECCTTTTCCCS------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTC
T ss_pred CCcEEeehhhhCCH------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccC
Confidence 57999999998732 135667777764321 000124578999999987 8
Q ss_pred ccHHHHhccc-ceeeecCCCHHHHHHHHHHHhcCccc-------C-------------------CcccHHHHHHH-----
Q psy3540 76 IDEAFRRRFE-KRVYIPLPNEWARYQLLTLCLEGVVI-------D-------------------VNLDFHKISKM----- 123 (202)
Q Consensus 76 ld~al~rrf~-~~i~i~~P~~~~R~~il~~~l~~~~~-------~-------------------~~~~~~~la~~----- 123 (202)
+++++++||| ..+..+.|+.+ ...|.++.+..... + ++.....|...
T Consensus 460 l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR 538 (595)
T 3f9v_A 460 LPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMR 538 (595)
T ss_dssp SCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSS
T ss_pred CCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999998 46666778888 88888887753221 0 11112233332
Q ss_pred ---------ccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhCCC
Q psy3540 124 ---------LEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 183 (202)
Q Consensus 124 ---------t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 183 (202)
+-+.|++.+.++++.|...|..+.. ..|+.+|+.+|+.-++.|
T Consensus 539 ~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~-----------------~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 539 KKSSETPDSPILITPRQLEALIRISEAYAKMALK-----------------AEVTREDAERAINIMRLF 590 (595)
T ss_dssp CSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSS-----------------CCSSHHHHHHHHHHHHHH
T ss_pred HhhccCCCccccccHHHHHHHHHHHHHHHHHhCc-----------------CCCCHHHHHHHHHHHHHH
Confidence 3477888888888877666654422 268999999999876543
No 66
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.71 E-value=1.1e-07 Score=81.75 Aligned_cols=145 Identities=14% Similarity=0.103 Sum_probs=100.2
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEe---------cC---CCCCccHHHHhc
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAA---------TN---HPWDIDEAFRRR 83 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viat---------Tn---~~~~ld~al~rr 83 (202)
|.|+||||+|.+- ....+.|+..|..-.. ++++++| |+ .|..+++.+++|
T Consensus 296 ~~VliIDEa~~l~------------~~a~~aLlk~lEe~~~------~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLD------------IECFTYLHRALESSIA------PIVIFASNRGNCVIRGTEDITSPHGIPLDLLDR 357 (456)
T ss_dssp ECEEEEESGGGCB------------HHHHHHHHHHTTSTTC------CEEEEEECCSEEECBTTSSCEEETTCCHHHHTT
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHhhccCC------CEEEEecCCccccccccccccccccCChhHHhh
Confidence 5699999999983 2356788888775432 3655566 43 288999999999
Q ss_pred ccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhh
Q psy3540 84 FEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKML-EGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQ 161 (202)
Q Consensus 84 f~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t-~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~ 161 (202)
|.. +.++.|+.++...+|+..+...... ++..+..++..+ .| +++..-.+++.|...|..+..
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~------------- 422 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGK------------- 422 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTC-------------
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCC-------------
Confidence 987 5999999999999999887532221 233467788877 55 888888888888777765432
Q ss_pred ccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q psy3540 162 EDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEF 199 (202)
Q Consensus 162 ~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~ 199 (202)
..|+.+|+..|+.-+-- ....++.+.+|..+|
T Consensus 423 ----~~v~~~~v~~~~~~~~d--~~~~~~~~~~~~~~~ 454 (456)
T 2c9o_A 423 ----DSIEKEHVEEISELFYD--AKSSAKILADQQDKY 454 (456)
T ss_dssp ----SSBCHHHHHHHHHHSCC--HHHHHHHHHC-----
T ss_pred ----CccCHHHHHHHHHHhcC--hHHHHHHHHHHHHhc
Confidence 16999999999988632 123344444444443
No 67
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=3.2e-07 Score=75.51 Aligned_cols=108 Identities=14% Similarity=0.073 Sum_probs=79.7
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
.+.||+|||+|.+... ..+.|+..|+.... ...+|.+||.++.+++++++|+. .+.++.|+
T Consensus 133 ~~~vliiDE~~~l~~~------------~~~~Ll~~le~~~~------~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~ 193 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD------------AQSALRRTMETYSG------VTRFCLICNYVTRIIDPLASQCS-KFRFKALD 193 (353)
T ss_dssp SCEEEEETTGGGSCHH------------HHHHHHHHHHHTTT------TEEEEEEESCGGGSCHHHHHHSE-EEECCCCC
T ss_pred CceEEEEECCCccCHH------------HHHHHHHHHHhcCC------CceEEEEeCchhhCcchhhccCc-eEEeCCCC
Confidence 4569999999998532 23567777776543 24566788999999999999987 88999999
Q ss_pred HHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 95 EWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 95 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
.++...+++..+....+. ++..+..++..+.|. .+.+.++++.+...
T Consensus 194 ~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 194 ASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITLLQSASKG 241 (353)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHHh
Confidence 999999999988543322 344578899998874 55555666655543
No 68
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=3.4e-07 Score=74.27 Aligned_cols=106 Identities=15% Similarity=0.082 Sum_probs=77.3
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
.+.||+|||+|.+... ..+.|+..++... ..+.+|++||.+..+++++++|+. .+.++.|+
T Consensus 107 ~~~viiiDe~~~l~~~------------~~~~L~~~le~~~------~~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~ 167 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG------------AQQALRRTMELYS------NSTRFAFACNQSNKIIEPLQSQCA-ILRYSKLS 167 (323)
T ss_dssp CCEEEEEESGGGSCHH------------HHHTTHHHHHHTT------TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCC
T ss_pred CceEEEEECcccCCHH------------HHHHHHHHHhccC------CCceEEEEeCChhhchhHHHhhce-EEeecCCC
Confidence 4899999999998431 2455666666543 336777888999999999999886 89999999
Q ss_pred HHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 95 EWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 95 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
.++...+++..+...... ++..+..++..+.| +++.+.++++.+.
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 168 DEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV 213 (323)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999999888543322 23457788888876 4445445555444
No 69
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.7e-07 Score=77.09 Aligned_cols=90 Identities=10% Similarity=0.066 Sum_probs=67.7
Q ss_pred hHHHHHHHHh--hhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc--
Q psy3540 2 REVQRTNVPS--NSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID-- 77 (202)
Q Consensus 2 k~i~~~F~~A--~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld-- 77 (202)
+.++..|... ....|+||+|||+|.+. . +.++..|+.+... . +.+++||+++|.++..+
T Consensus 117 ~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~----------q~~L~~l~~~~~~-~-----~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 117 EALNFYITNVPKAKKRKTLILIQNPENLL-S----------EKILQYFEKWISS-K-----NSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHHHHHHSCGGGSCEEEEEEECCSSSC-C----------THHHHHHHHHHHC-S-----SCCEEEEEECCSSCCCHHH
T ss_pred HHHHHHHHHhhhccCCceEEEEecHHHhh-c----------chHHHHHHhcccc-c-----CCcEEEEEEecCcccchhh
Confidence 3577888875 45678999999999997 1 2355566654432 1 25689999999987544
Q ss_pred --HHHHhccc-ceeeecCCCHHHHHHHHHHHhcC
Q psy3540 78 --EAFRRRFE-KRVYIPLPNEWARYQLLTLCLEG 108 (202)
Q Consensus 78 --~al~rrf~-~~i~i~~P~~~~R~~il~~~l~~ 108 (202)
+++++||. ..|.|++++.++-..|++..+..
T Consensus 180 L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 180 INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 44566997 68999999999999999999865
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.62 E-value=1.3e-07 Score=86.08 Aligned_cols=128 Identities=9% Similarity=0.100 Sum_probs=91.6
Q ss_pred HHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC-----CCCCceEEEEEecCCCCC--------
Q psy3540 9 VPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS-----LYEDKIIMILAATNHPWD-------- 75 (202)
Q Consensus 9 ~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~-----~~~~~~v~viatTn~~~~-------- 75 (202)
...+...++||||||+|.+- ..+.+.|+..|+.-.-. .....++++|+|||.+..
T Consensus 573 ~~~~~~~~~vl~lDEi~~~~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~ 640 (758)
T 3pxi_A 573 EKVRRKPYSVVLLDAIEKAH------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGE 640 (758)
T ss_dssp HHHHHCSSSEEEEECGGGSC------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHH
T ss_pred HHHHhCCCeEEEEeCccccC------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHH
Confidence 44455667999999998762 24677888888762210 001135789999997665
Q ss_pred ----ccHHHHhcccceeeecCCCHHHHHHHHHHHhcCc---------ccC-CcccHHHHHHH--ccCCCHHHHHHHHHHH
Q psy3540 76 ----IDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGV---------VID-VNLDFHKISKM--LEGYTGSDIANLARDA 139 (202)
Q Consensus 76 ----ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~---------~~~-~~~~~~~la~~--t~g~s~~dl~~l~~~A 139 (202)
+.|++++||+..+.|++|+.+++..|++.++... .+. ++.-+..|+.. ...+..++|+++++++
T Consensus 641 ~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~ 720 (758)
T 3pxi_A 641 LKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKH 720 (758)
T ss_dssp HHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHH
T ss_pred HHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHH
Confidence 7899999999999999999999999999988542 111 23346667664 3467889999999999
Q ss_pred HHHHHHHHH
Q psy3540 140 AMMSIRRKI 148 (202)
Q Consensus 140 ~~~a~~~~~ 148 (202)
...++.+..
T Consensus 721 v~~~l~~~~ 729 (758)
T 3pxi_A 721 VEDRLSEEL 729 (758)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 71
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=8.5e-07 Score=72.00 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=79.8
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCC
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLP 93 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P 93 (202)
..+.||+|||+|.+.. ...+.|+..++... ..+.+|++||.++.+++++.+|+. .+.+++|
T Consensus 109 ~~~~vliiDe~~~l~~------------~~~~~L~~~le~~~------~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l 169 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ------------DAQQALRRTMEMFS------SNVRFILSCNYSSKIIEPIQSRCA-IFRFRPL 169 (327)
T ss_dssp CSCEEEEEETGGGSCH------------HHHHHHHHHHHHTT------TTEEEEEEESCGGGSCHHHHHTEE-EEECCCC
T ss_pred CCCeEEEEeCCCcCCH------------HHHHHHHHHHHhcC------CCCeEEEEeCCccccCHHHHhhCc-EEEecCC
Confidence 3588999999999843 12456777777643 336788889999999999999987 7899999
Q ss_pred CHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 94 NEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 94 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
+.++...+++..+...... ++..+..++..+.| +.+.+.++++.+.
T Consensus 170 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 170 RDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp CHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 9999999999988654432 33457788888866 5566666666554
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.59 E-value=3e-07 Score=83.63 Aligned_cols=129 Identities=11% Similarity=0.101 Sum_probs=93.5
Q ss_pred HHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCC-----CceEEEEEecCCCC--------
Q psy3540 8 NVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYE-----DKIIMILAATNHPW-------- 74 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~-----~~~v~viatTn~~~-------- 74 (202)
....+...++||||||+|.+- ..+.+.|++.|+.-.-.... -.++++|+|||.+.
T Consensus 550 ~~~~~~~~~~vl~lDEi~~~~------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~ 617 (758)
T 1r6b_X 550 TDAVIKHPHAVLLLDEIEKAH------------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSI 617 (758)
T ss_dssp HHHHHHCSSEEEEEETGGGSC------------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-------
T ss_pred HHHHHhCCCcEEEEeCccccC------------HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhccc
Confidence 344455567999999999762 23678888888842110000 13478999999854
Q ss_pred -----------------CccHHHHhcccceeeecCCCHHHHHHHHHHHhcCc---------ccC-CcccHHHHHHHc--c
Q psy3540 75 -----------------DIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGV---------VID-VNLDFHKISKML--E 125 (202)
Q Consensus 75 -----------------~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~---------~~~-~~~~~~~la~~t--~ 125 (202)
.++|++++||+..+.|+.|+.+++..|++.++... .+. ++.-+..|+... .
T Consensus 618 g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 697 (758)
T 1r6b_X 618 GLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDR 697 (758)
T ss_dssp ----------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBT
T ss_pred CccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCc
Confidence 67899999999999999999999999999998632 111 233466677654 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy3540 126 GYTGSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 126 g~s~~dl~~l~~~A~~~a~~~~~ 148 (202)
++.+++|.++++++...++.+..
T Consensus 698 ~~g~R~l~~~i~~~~~~~l~~~~ 720 (758)
T 1r6b_X 698 AMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_dssp TTBTTTHHHHHHHHHTHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHH
Confidence 67799999999999988776543
No 73
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.58 E-value=1.2e-06 Score=70.93 Aligned_cols=107 Identities=20% Similarity=0.095 Sum_probs=77.6
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCC
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLP 93 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P 93 (202)
..+.||+|||+|.+... ..+.|+..++... ..+.+|++||.+..+++++++|+. .+.++.|
T Consensus 101 ~~~~vliiDe~~~l~~~------------~~~~L~~~le~~~------~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~ 161 (319)
T 2chq_A 101 APFKIIFLDEADALTAD------------AQAALRRTMEMYS------KSCRFILSCNYVSRIIEPIQSRCA-VFRFKPV 161 (319)
T ss_dssp CCCEEEEEETGGGSCHH------------HHHTTGGGTSSSS------SSEEEEEEESCGGGSCHHHHTTCE-EEECCCC
T ss_pred CCceEEEEeCCCcCCHH------------HHHHHHHHHHhcC------CCCeEEEEeCChhhcchHHHhhCe-EEEecCC
Confidence 35899999999998431 2345555555432 457888899999999999999986 8999999
Q ss_pred CHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 94 NEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 94 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
+.+++..+++..+...+.. ++..+..|+..+.| +.+.+.++++.+.
T Consensus 162 ~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 162 PKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (319)
T ss_dssp CHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999999998654432 23457778877765 4455555555443
No 74
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.54 E-value=2.8e-07 Score=80.21 Aligned_cols=121 Identities=14% Similarity=0.101 Sum_probs=77.9
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC----CCCCCCceEEEEEecCCCCC---ccHHHHhcccce
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN----SSLYEDKIIMILAATNHPWD---IDEAFRRRFEKR 87 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~----~~~~~~~~v~viatTn~~~~---ld~al~rrf~~~ 87 (202)
.|+|+|||||+.+- ..+.+.|+..|+.-. +........++|+|||.+.. ..+++++||...
T Consensus 109 ~~~IL~IDEI~r~~------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~ 176 (500)
T 3nbx_X 109 EAEIVFLDEIWKAG------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIR 176 (500)
T ss_dssp GCSEEEEESGGGCC------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEE
T ss_pred cceeeeHHhHhhhc------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHH
Confidence 47899999997542 235677888876321 00000122246777776332 446999999999
Q ss_pred eeecCCCH-HHHHHHHHHHhcC-------------------------cccCCcccHHHHHHHc---------cCCCHHHH
Q psy3540 88 VYIPLPNE-WARYQLLTLCLEG-------------------------VVIDVNLDFHKISKML---------EGYTGSDI 132 (202)
Q Consensus 88 i~i~~P~~-~~R~~il~~~l~~-------------------------~~~~~~~~~~~la~~t---------~g~s~~dl 132 (202)
++++.|+. ++|..|++..... ..++ +.-++.++... .|.|++.+
T Consensus 177 i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~v~e~i~~l~~~lr~~r~~~~iS~R~~ 255 (500)
T 3nbx_X 177 LWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DHVFELIFMLRQQLDKLPDAPYVSDRRW 255 (500)
T ss_dssp EECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HHHHHHHHHHHHHHHHCSSSCCCCHHHH
T ss_pred HHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hHHHHHHHHHHHHhhcCCCCCccchhHH
Confidence 99999987 7889998876531 1111 11133344333 58899999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3540 133 ANLARDAAMMSIRRKI 148 (202)
Q Consensus 133 ~~l~~~A~~~a~~~~~ 148 (202)
..+++.|...|..+..
T Consensus 256 ~~llr~A~A~A~l~gr 271 (500)
T 3nbx_X 256 KKAIRLLQASAFFSGR 271 (500)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCC
Confidence 9999988777776544
No 75
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.52 E-value=4.5e-07 Score=74.12 Aligned_cols=106 Identities=14% Similarity=0.072 Sum_probs=73.4
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
.+.||||||+|.+.+. ...+.|+..++... ..+.+|++||.+..+++++++||. .+.|+.|+
T Consensus 105 ~~~vliiDEi~~l~~~-----------~~~~~L~~~le~~~------~~~~iI~~~n~~~~l~~~l~sR~~-~i~~~~~~ 166 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLA-----------ESQRHLRSFMEAYS------SNCSIIITANNIDGIIKPLQSRCR-VITFGQPT 166 (324)
T ss_dssp CEEEEEEESCCCGGGH-----------HHHHHHHHHHHHHG------GGCEEEEEESSGGGSCTTHHHHSE-EEECCCCC
T ss_pred CCeEEEEECCcccCcH-----------HHHHHHHHHHHhCC------CCcEEEEEeCCccccCHHHHhhCc-EEEeCCCC
Confidence 6799999999998521 13456666666543 346788899999999999999995 79999999
Q ss_pred HHHHHHHHHHHhcC---------cccCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 95 EWARYQLLTLCLEG---------VVIDVNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 95 ~~~R~~il~~~l~~---------~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
.++|.+|++.++.. ..++....+..++..+.|-. +++.+.++.+
T Consensus 167 ~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~-R~a~~~L~~~ 219 (324)
T 3u61_B 167 DEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF-RKTIGELDSY 219 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT-THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH-HHHHHHHHHH
Confidence 99988776665532 22222145777888876633 3333444433
No 76
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.51 E-value=1.6e-07 Score=69.91 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhC-CCeEEEEccccccccccC-CCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC-----C
Q psy3540 3 EVQRTNVPSNSY-RVSTIFIDEVDSLCSMRG-SDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW-----D 75 (202)
Q Consensus 3 ~i~~~F~~A~~~-~P~Ii~iDeiD~l~~~r~-~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~-----~ 75 (202)
.++.+|..+... .|+||+|||+|.+.+.+. ...... +.+.|...++. ..+++|++||.+. .
T Consensus 102 ~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~----~~~~l~~~~~~--------~~~~ii~~~~~~~~~~~~~ 169 (187)
T 2p65_A 102 RLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALD----AGNILKPMLAR--------GELRCIGATTVSEYRQFIE 169 (187)
T ss_dssp HHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCC----THHHHHHHHHT--------TCSCEEEEECHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchH----HHHHHHHHHhc--------CCeeEEEecCHHHHHHHHh
Confidence 356677776665 789999999999986653 111111 23344444432 3468889999875 6
Q ss_pred ccHHHHhcccceeeecCCC
Q psy3540 76 IDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 76 ld~al~rrf~~~i~i~~P~ 94 (202)
+|+++++||+. ++++.|+
T Consensus 170 ~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 170 KDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp TCHHHHHHEEE-EECCSCC
T ss_pred ccHHHHHhcCc-ccCCCCC
Confidence 89999999995 9999986
No 77
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.50 E-value=2.9e-06 Score=72.59 Aligned_cols=163 Identities=19% Similarity=0.230 Sum_probs=106.5
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCC----CCCceEEEEEec----CCCCCccHHHHhccccee
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL----YEDKIIMILAAT----NHPWDIDEAFRRRFEKRV 88 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~----~~~~~v~viatT----n~~~~ld~al~rrf~~~i 88 (202)
.|+|+||+|.++.+.++.+..-....+-..||..|++-.... ....+|++|+|. +.|.++-|.++.||+..+
T Consensus 252 ~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i 331 (444)
T 1g41_A 252 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV 331 (444)
T ss_dssp CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEE
T ss_pred CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceee
Confidence 499999999998764321212222346778999999842110 012568888886 356666688999999999
Q ss_pred eecCCCHHHHHHHHH---H-----Hh-----cCcccC-CcccHHHHHH-------HccCCCHHHHHHHHHHHHHHHHHHH
Q psy3540 89 YIPLPNEWARYQLLT---L-----CL-----EGVVID-VNLDFHKISK-------MLEGYTGSDIANLARDAAMMSIRRK 147 (202)
Q Consensus 89 ~i~~P~~~~R~~il~---~-----~l-----~~~~~~-~~~~~~~la~-------~t~g~s~~dl~~l~~~A~~~a~~~~ 147 (202)
.++..+.++-..|++ . +. .+..+. .+--+..|++ .|...-++-|..++.........+.
T Consensus 332 ~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~ 411 (444)
T 1g41_A 332 ELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSA 411 (444)
T ss_dssp ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHG
T ss_pred eCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhc
Confidence 999999999999983 1 11 111111 2333556665 4677888888888888777766554
Q ss_pred HhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHH
Q psy3540 148 IMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYD 193 (202)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~ 193 (202)
.... .....||.+++...+ .|.+..+++.+|.
T Consensus 412 ~~~~-----------~~~~~i~~~~v~~~l---~~~~~~~dl~~~~ 443 (444)
T 1g41_A 412 SDMN-----------GQTVNIDAAYVADAL---GEVVENEDLSRFI 443 (444)
T ss_dssp GGCT-----------TCEEEECHHHHHHHH---TTTTTCHHHHHHH
T ss_pred cccC-----------CCeEEEeHHHHHHhc---CccccCCChhccc
Confidence 3211 112368888887655 4666778888774
No 78
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=1.1e-06 Score=72.51 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=79.9
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
.|.||+|||+|.+-. ...+.|+..++.... +..+|.+|+.++.+.+++++|+ ..+.|++|+
T Consensus 134 ~~~vlilDE~~~L~~------------~~~~~L~~~le~~~~------~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~ 194 (354)
T 1sxj_E 134 RYKCVIINEANSLTK------------DAQAALRRTMEKYSK------NIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPS 194 (354)
T ss_dssp CCEEEEEECTTSSCH------------HHHHHHHHHHHHSTT------TEEEEEEESCSCSSCHHHHTTS-EEEECCCCC
T ss_pred CCeEEEEeCccccCH------------HHHHHHHHHHHhhcC------CCEEEEEeCCHHHHHHHHHhhc-eEEecCCcC
Confidence 677999999999521 124567777776543 3678888899999999999998 789999999
Q ss_pred HHHHHHHHHHHhcCcccC-C-cccHHHHHHHccCCCHHHHHHHHHHHHH
Q psy3540 95 EWARYQLLTLCLEGVVID-V-NLDFHKISKMLEGYTGSDIANLARDAAM 141 (202)
Q Consensus 95 ~~~R~~il~~~l~~~~~~-~-~~~~~~la~~t~g~s~~dl~~l~~~A~~ 141 (202)
.++...+++..+...++. + +..+..++..+.| +.+++.++++.+..
T Consensus 195 ~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 195 DSEISTILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp HHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 999999999988644332 2 4457888888866 56666666665543
No 79
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=1.4e-06 Score=76.07 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=69.3
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecC
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPL 92 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~ 92 (202)
...|+||||||+|.+..... ..++.|+..++... .++++++++..+..+++ + +|+...+.|+.
T Consensus 146 ~~~~~vliIDEid~l~~~~~---------~~l~~L~~~l~~~~------~~iIli~~~~~~~~l~~-l-~~r~~~i~f~~ 208 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMSGGDR---------GGVGQLAQFCRKTS------TPLILICNERNLPKMRP-F-DRVCLDIQFRR 208 (516)
T ss_dssp STTSEEEEECSGGGCCTTST---------THHHHHHHHHHHCS------SCEEEEESCTTSSTTGG-G-TTTSEEEECCC
T ss_pred cCCCeEEEEECCCccchhhH---------HHHHHHHHHHHhcC------CCEEEEEcCCCCccchh-h-HhceEEEEeCC
Confidence 35789999999999976421 12455666665532 34666666655555554 3 45566899999
Q ss_pred CCHHHHHHHHHHHhcC--cccCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy3540 93 PNEWARYQLLTLCLEG--VVIDVNLDFHKISKMLEGYTGSDIANLARD 138 (202)
Q Consensus 93 P~~~~R~~il~~~l~~--~~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 138 (202)
|+.+++..+|...+.. ..+++ ..+..|+..+.| |+..+++.
T Consensus 209 ~~~~~~~~~L~~i~~~~~~~i~~-~~l~~la~~s~G----diR~~i~~ 251 (516)
T 1sxj_A 209 PDANSIKSRLMTIAIREKFKLDP-NVIDRLIQTTRG----DIRQVINL 251 (516)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCT-THHHHHHHHTTT----CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC----cHHHHHHH
Confidence 9999999999887743 44443 348889988765 44444443
No 80
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.37 E-value=2.2e-06 Score=71.59 Aligned_cols=165 Identities=12% Similarity=0.106 Sum_probs=97.1
Q ss_pred HHHHHHHhh----hCCCeEEEEccccccccccCCCCcc--hHHHHHHHHHHHHHhCCC----CCC-----------CCCc
Q psy3540 4 VQRTNVPSN----SYRVSTIFIDEVDSLCSMRGSDSEH--EASRRFKAELLIQMDGLN----SSL-----------YEDK 62 (202)
Q Consensus 4 i~~~F~~A~----~~~P~Ii~iDeiD~l~~~r~~~~~~--~~~~~~~~~ll~~ld~~~----~~~-----------~~~~ 62 (202)
+..+|..+. ...++||||||+|.+...+...... .....+.+.|+..|++.. ... -...
T Consensus 122 ~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~ 201 (376)
T 1um8_A 122 LTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTS 201 (376)
T ss_dssp HHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECT
T ss_pred HHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecC
Confidence 444554432 3368999999999998765321111 111247888999998641 000 0013
Q ss_pred eEEEEEecCC-----------------------------------------CCCccHHHHhcccceeeecCCCHHHHHHH
Q psy3540 63 IIMILAATNH-----------------------------------------PWDIDEAFRRRFEKRVYIPLPNEWARYQL 101 (202)
Q Consensus 63 ~v~viatTn~-----------------------------------------~~~ld~al~rrf~~~i~i~~P~~~~R~~i 101 (202)
++++|++||. ...+.|++++||+..+.++.++.++...|
T Consensus 202 n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i 281 (376)
T 1um8_A 202 DILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDI 281 (376)
T ss_dssp TCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHH
Confidence 4567777762 11356888889989999999999999999
Q ss_pred HHH----Hhc---------CcccC-CcccHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCC
Q psy3540 102 LTL----CLE---------GVVID-VNLDFHKISKMLE--GYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID 165 (202)
Q Consensus 102 l~~----~l~---------~~~~~-~~~~~~~la~~t~--g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~ 165 (202)
+.. ++. +..+. ++.-+..|+.... +..++.|.+++..+...++.+..... ...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~-----------~~~ 350 (376)
T 1um8_A 282 LQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLK-----------GSE 350 (376)
T ss_dssp HHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGT-----------TSE
T ss_pred HhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCC-----------CCE
Confidence 862 221 11111 2334667777643 46889999999999888877643211 111
Q ss_pred CCCcHHHHHHHHHH
Q psy3540 166 LPVTEKDFREAIAR 179 (202)
Q Consensus 166 ~~it~~df~~Al~~ 179 (202)
..||.+++..+.+.
T Consensus 351 ~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 351 VRITKDCVLKQAEP 364 (376)
T ss_dssp EEECHHHHTTSSCC
T ss_pred EEEeHHHhcCCCCc
Confidence 24777777664433
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.36 E-value=4.5e-06 Score=69.91 Aligned_cols=124 Identities=15% Similarity=0.061 Sum_probs=82.4
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC---Ccc---HHHHhcccce
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW---DID---EAFRRRFEKR 87 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~---~ld---~al~rrf~~~ 87 (202)
..|.||+|||+|.+...+.. . ...+..|+..++..... ....++.+|++|+.++ .++ +.+.++|...
T Consensus 137 ~~~~llvlDe~~~l~~~~~~--~----~~~l~~l~~~~~~~~~~-~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~ 209 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPRI--A----AEDLYTLLRVHEEIPSR-DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFK 209 (412)
T ss_dssp TCEEEEEEESTHHHHSCTTS--C----HHHHHHHHTHHHHSCCT-TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEE
T ss_pred CCeEEEEEeCHHHHhhccCc--c----hHHHHHHHHHHHhcccC-CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCe
Confidence 56999999999998653211 1 23455555556554311 0014688888888766 344 6666777777
Q ss_pred eeecCCCHHHHHHHHHHHhcCcc---cCCcccHHHHHHHcc------CCCHHHHHHHHHHHHHHHHH
Q psy3540 88 VYIPLPNEWARYQLLTLCLEGVV---IDVNLDFHKISKMLE------GYTGSDIANLARDAAMMSIR 145 (202)
Q Consensus 88 i~i~~P~~~~R~~il~~~l~~~~---~~~~~~~~~la~~t~------g~s~~dl~~l~~~A~~~a~~ 145 (202)
+.+++++.++..++++..+.... ..++..+..++..|. | .+..+..++..|...+..
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEA 275 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764221 112345677888888 7 466777888877665543
No 82
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.36 E-value=2.2e-06 Score=79.10 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=92.8
Q ss_pred HHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCC-----CCceEEEEEecCCC----------
Q psy3540 9 VPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY-----EDKIIMILAATNHP---------- 73 (202)
Q Consensus 9 ~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~-----~~~~v~viatTn~~---------- 73 (202)
...+...++||||||+|.+- ..+.+.|+..|+.-.-... .-.++++|+|||.+
T Consensus 654 ~~~~~~~~~vl~lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~ 721 (854)
T 1qvr_A 654 EAVRRRPYSVILFDEIEKAH------------PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQK 721 (854)
T ss_dssp HHHHHCSSEEEEESSGGGSC------------HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHT
T ss_pred HHHHhCCCeEEEEecccccC------------HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhccc
Confidence 33445557999999998762 2467888888885321000 01357899999972
Q ss_pred ----------------CCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCc---------ccC-CcccHHHHHHHcc--
Q psy3540 74 ----------------WDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGV---------VID-VNLDFHKISKMLE-- 125 (202)
Q Consensus 74 ----------------~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~---------~~~-~~~~~~~la~~t~-- 125 (202)
..+.|+++.||+..+.+++|+.++...|++.++... .+. ++.-+..|+...-
T Consensus 722 ~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~ 801 (854)
T 1qvr_A 722 GWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDP 801 (854)
T ss_dssp TCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBT
T ss_pred ccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCC
Confidence 346788888999999999999999999999988632 111 2334677887765
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy3540 126 GYTGSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 126 g~s~~dl~~l~~~A~~~a~~~~~ 148 (202)
.++.++|+++++++...++.+..
T Consensus 802 ~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 802 VFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp TTBTSTHHHHHHHHTHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999988887654
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.34 E-value=4e-06 Score=69.07 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=80.8
Q ss_pred HHHHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.++++++.+.. ..+.|++|||+|.+.. ...+.|+..++.-. ..+++|.+||+++.+.+
T Consensus 92 ~ir~l~~~~~~~~~~~~~kvviIdead~l~~------------~a~naLLk~lEep~------~~~~~Il~t~~~~~l~~ 153 (334)
T 1a5t_A 92 AVREVTEKLNEHARLGGAKVVWVTDAALLTD------------AAANALLKTLEEPP------AETWFFLATREPERLLA 153 (334)
T ss_dssp HHHHHHHHTTSCCTTSSCEEEEESCGGGBCH------------HHHHHHHHHHTSCC------TTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHhhccccCCcEEEEECchhhcCH------------HHHHHHHHHhcCCC------CCeEEEEEeCChHhCcH
Confidence 46777777653 2468999999999842 13577888887633 44788888999999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHH
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLAR 137 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~ 137 (202)
++++|+. .+.++.|+.++...+++... .+ .+..+..++..+.| +++.+.++++
T Consensus 154 ti~SRc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 154 TLRSRCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp HHHTTSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred HHhhcce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 9999874 79999999999999988775 22 23456678877766 4444444443
No 84
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.06 E-value=1.1e-05 Score=71.71 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=84.8
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC----C-----------CCCCCceEEEEEecCCC--CCcc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN----S-----------SLYEDKIIMILAATNHP--WDID 77 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~----~-----------~~~~~~~v~viatTn~~--~~ld 77 (202)
.+.++||||+|.+-+ .+.+.|+..|+.-. + ...-...+.||+|||.. +.++
T Consensus 201 ~~gvL~LDEi~~l~~------------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~ 268 (604)
T 3k1j_A 201 HKGVLFIDEIATLSL------------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMH 268 (604)
T ss_dssp TTSEEEETTGGGSCH------------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSC
T ss_pred CCCEEEEechhhCCH------------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcC
Confidence 567999999999721 13455555555211 0 00011357899999986 6899
Q ss_pred HHHHhccc---ceeeecC--C-CHHHHHHHHHHHhcCcc------cCCcccHHHHHHHc---cCC------CHHHHHHHH
Q psy3540 78 EAFRRRFE---KRVYIPL--P-NEWARYQLLTLCLEGVV------IDVNLDFHKISKML---EGY------TGSDIANLA 136 (202)
Q Consensus 78 ~al~rrf~---~~i~i~~--P-~~~~R~~il~~~l~~~~------~~~~~~~~~la~~t---~g~------s~~dl~~l~ 136 (202)
+++++||. ..+.++. | ..+....+++.+..... .-.+-.+..|.... .|- +.++|.+++
T Consensus 269 ~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~ll 348 (604)
T 3k1j_A 269 PALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIV 348 (604)
T ss_dssp HHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHH
T ss_pred HHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHH
Confidence 99999996 4555432 2 34556666655543211 11222344555433 553 799999999
Q ss_pred HHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHH
Q psy3540 137 RDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 179 (202)
Q Consensus 137 ~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~ 179 (202)
+.|...|..+.. ..|+.+|+.+|+..
T Consensus 349 r~A~~~A~~~~~-----------------~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 349 RAAGDIAVKKGK-----------------KYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHTTC-----------------SSBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-----------------ccccHHHHHHHHHh
Confidence 998776644321 26999999999965
No 85
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.85 E-value=4.2e-05 Score=62.20 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=68.1
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCC-------CCccHHHHhc
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHP-------WDIDEAFRRR 83 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~-------~~ld~al~rr 83 (202)
+++|||||+|.+.. .+...|+..++... +.......+.||+|||.+ ..+++.+..|
T Consensus 97 ~g~L~LDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~R 164 (304)
T 1ojl_A 97 GGTLFLDEIGDISP------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYR 164 (304)
T ss_dssp TSEEEEESCTTCCH------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHH
T ss_pred CCEEEEeccccCCH------------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhh
Confidence 57999999999843 13455666666532 000012357899999985 2356677778
Q ss_pred ccceeeecCCCHHHH----HHHHHHHhcCc----cc----CCcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 84 FEKRVYIPLPNEWAR----YQLLTLCLEGV----VI----DVNLDFHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 84 f~~~i~i~~P~~~~R----~~il~~~l~~~----~~----~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
|. .+.+.+|...+| ..++++++... .. -++..+..|....-.-+.++|.+++..|...+
T Consensus 165 l~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 165 LN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred cC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 75 555555655444 44666666432 10 12223555666552236678888888876543
No 86
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=6.5e-05 Score=61.21 Aligned_cols=83 Identities=7% Similarity=0.049 Sum_probs=65.8
Q ss_pred HHHHHHHHhhhCC----CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNSYR----VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~~~----P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.+|++++.|.... .-|++|||+|.+.. ...+.|+..|+.-. ..+++|.+|++|+.|.+
T Consensus 66 ~ir~li~~~~~~p~~~~~kvviIdead~lt~------------~a~naLLk~LEep~------~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 66 DIRTIKDFLNYSPELYTRKYVIVHDCERMTQ------------QAANAFLKALEEPP------EYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHTSCCSSSSSEEEEETTGGGBCH------------HHHHHTHHHHHSCC------TTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHhhccccCCceEEEeccHHHhCH------------HHHHHHHHHHhCCC------CCeEEEEEECChHhChH
Confidence 5788888886321 36999999999842 13578999888744 34677777888999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHh
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCL 106 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l 106 (202)
++++| .+.++.|+.++-...++..+
T Consensus 128 tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 99999999999999888876
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.80 E-value=4e-05 Score=77.69 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=61.1
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCC----CCceEEEEEecCCCC-----CccHHHHhccc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY----EDKIIMILAATNHPW-----DIDEAFRRRFE 85 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~----~~~~v~viatTn~~~-----~ld~al~rrf~ 85 (202)
.++||||||+|.-...+- +. .....++.+++. ..++..... .-.++.+|||||.|. .|+++++|||
T Consensus 1336 k~~VlFiDEinmp~~d~y--g~-q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf- 1410 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKY--GS-QNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA- 1410 (2695)
T ss_dssp SCEEEEEETTTCSCCCSS--SC-CHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-
T ss_pred ceEEEEeccccccccccc--Cc-hhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-
Confidence 357999999997544331 11 122334444442 223322100 013589999999995 8999999999
Q ss_pred ceeeecCCCHHHHHHHHHHHhcC
Q psy3540 86 KRVYIPLPNEWARYQLLTLCLEG 108 (202)
Q Consensus 86 ~~i~i~~P~~~~R~~il~~~l~~ 108 (202)
..++++.|+.+++..|+..+++.
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHH
Confidence 88999999999999999998854
No 88
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=0.00011 Score=60.26 Aligned_cols=92 Identities=12% Similarity=0.089 Sum_probs=67.1
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
.+.|++|||+|.+... ..+.|+..++.... ...+|.+||.+..+.+++++|+. .+.++.++
T Consensus 110 ~~~viiiDe~~~l~~~------------~~~~L~~~le~~~~------~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~ 170 (340)
T 1sxj_C 110 GFKLIILDEADAMTNA------------AQNALRRVIERYTK------NTRFCVLANYAHKLTPALLSQCT-RFRFQPLP 170 (340)
T ss_dssp SCEEEEETTGGGSCHH------------HHHHHHHHHHHTTT------TEEEEEEESCGGGSCHHHHTTSE-EEECCCCC
T ss_pred CceEEEEeCCCCCCHH------------HHHHHHHHHhcCCC------CeEEEEEecCccccchhHHhhce-eEeccCCC
Confidence 3789999999988421 24567777776543 25667788999999999999986 78888889
Q ss_pred HHHHHHHHHHHhc--CcccCCcccHHHHHHHccC
Q psy3540 95 EWARYQLLTLCLE--GVVIDVNLDFHKISKMLEG 126 (202)
Q Consensus 95 ~~~R~~il~~~l~--~~~~~~~~~~~~la~~t~g 126 (202)
.++....+...+. +..++ +..+..++..+.|
T Consensus 171 ~~~~~~~l~~~~~~~~~~i~-~~~~~~i~~~s~G 203 (340)
T 1sxj_C 171 QEAIERRIANVLVHEKLKLS-PNAEKALIELSNG 203 (340)
T ss_dssp HHHHHHHHHHHHHTTTCCBC-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCC
Confidence 9999999988884 33333 3345666666544
No 89
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.68 E-value=2.3e-05 Score=76.46 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=54.4
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccC---CCC--cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRG---SDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH 72 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~---~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~ 72 (202)
++|+.+|..|+..+||+||+|++|+|++.+. ..+ +.+...|+++++|..|+++... .+|+|| +||+
T Consensus 1147 ~~l~~~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~----~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1147 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ----SNTLLI-FINQ 1217 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH----TTCEEE-EEEC
T ss_pred HHHHHHHHHHHhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhcc----CCeEEE-Eecc
Confidence 6899999999999999999999999999842 212 2366788999999999998876 667777 6676
No 90
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.61 E-value=0.00025 Score=55.97 Aligned_cols=116 Identities=11% Similarity=0.032 Sum_probs=65.5
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC-----CCCCCCceEEEEEecCCC-------CCccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN-----SSLYEDKIIMILAATNHP-------WDIDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~-----~~~~~~~~v~viatTn~~-------~~ld~al~r 82 (202)
.+.+|||||+|.+.. .+...|+..++.-. +.......+.+|+|||.+ ..+++++.+
T Consensus 100 ~~~~l~lDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~ 167 (265)
T 2bjv_A 100 DGGTLFLDELATAPM------------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167 (265)
T ss_dssp TTSEEEEESGGGSCH------------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH
T ss_pred CCcEEEEechHhcCH------------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH
Confidence 467999999998843 12345666665321 000011346788999984 247789999
Q ss_pred cccceeeecCCCHH----HHHHHHHHHhcC----cccC-----CcccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q psy3540 83 RFEKRVYIPLPNEW----ARYQLLTLCLEG----VVID-----VNLDFHKISKMLEGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 83 rf~~~i~i~~P~~~----~R~~il~~~l~~----~~~~-----~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a 143 (202)
||.. +.+.+|... ....++++++.. .... ++..+..|....-.-+.++|.++++.+...+
T Consensus 168 Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 168 ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 9963 344455444 444455555432 2111 1223444544432335678888888876543
No 91
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.24 E-value=0.00053 Score=52.37 Aligned_cols=73 Identities=21% Similarity=0.179 Sum_probs=50.9
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCC
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLP 93 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P 93 (202)
..++||+|||++.+++.+....+. ..++..+..-.. ..+-+|.+|+.+..|+.++++|++..++++.|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~-------~rll~~l~~~r~-----~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKI-------PENVQWLNTHRH-----QGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCC-------CHHHHGGGGTTT-----TTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccchh-------HHHHHHHHhcCc-----CCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 457899999999998766322111 124444443222 34566778888999999999999999999987
Q ss_pred CHHHH
Q psy3540 94 NEWAR 98 (202)
Q Consensus 94 ~~~~R 98 (202)
....|
T Consensus 154 ~~~~~ 158 (199)
T 2r2a_A 154 KMGMR 158 (199)
T ss_dssp SSCCE
T ss_pred ccCcc
Confidence 55443
No 92
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.01 E-value=0.0082 Score=51.73 Aligned_cols=136 Identities=18% Similarity=0.096 Sum_probs=80.4
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC----CCCCCCceEEEEEecCCCC-----------CccHHHH
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN----SSLYEDKIIMILAATNHPW-----------DIDEAFR 81 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~----~~~~~~~~v~viatTn~~~-----------~ld~al~ 81 (202)
-|+|+||++.+-. .....|+..|..-. +. .-+.++.||||+|..+ .|+++++
T Consensus 302 Gvl~lDEIn~~~~------------~~qsaLlEaMEe~~VtI~G~-~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alL 368 (506)
T 3f8t_A 302 GILAVDHLEGAPE------------PHRWALMEAMDKGTVTVDGI-ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFL 368 (506)
T ss_dssp SEEEEECCTTCCH------------HHHHHHHHHHHHSEEEETTE-EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHH
T ss_pred CeeehHhhhhCCH------------HHHHHHHHHHhCCcEEECCE-EcCCCeEEEEEeCcccccCCCCCccccCCChHHh
Confidence 5999999988622 24566666665311 00 0124578999999865 8899999
Q ss_pred hccccee-eecCCCHHHH---------HHHHHHHh---c----CcccCCcc-c-HHHHHH--------------HccCCC
Q psy3540 82 RRFEKRV-YIPLPNEWAR---------YQLLTLCL---E----GVVIDVNL-D-FHKISK--------------MLEGYT 128 (202)
Q Consensus 82 rrf~~~i-~i~~P~~~~R---------~~il~~~l---~----~~~~~~~~-~-~~~la~--------------~t~g~s 128 (202)
.|||..+ .+..|+.+.- .+.++.|. + ...++.++ + +..+.. ..-|.|
T Consensus 369 DRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giS 448 (506)
T 3f8t_A 369 SHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVT 448 (506)
T ss_dssp TTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred hheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCccccccccccccccc
Confidence 9998744 3455654431 12233333 2 11122111 0 111100 244889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhCC
Q psy3540 129 GSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK 182 (202)
Q Consensus 129 ~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 182 (202)
++.+..+++-|...|..+... .|+.+|...|+.-+.-
T Consensus 449 pR~leaLiRlA~A~A~L~gR~-----------------~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 449 RRQLESVERLAKAHARMRLSD-----------------DVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS-----------------EECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcC-----------------CCCHHHHHHHHHHHHH
Confidence 999999999888888766432 6899999999987754
No 93
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.78 E-value=0.023 Score=46.37 Aligned_cols=118 Identities=10% Similarity=0.041 Sum_probs=74.1
Q ss_pred HHHHHHHhhh----CCCeEEEEccccc-cccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC-----C
Q psy3540 4 VQRTNVPSNS----YRVSTIFIDEVDS-LCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH-----P 73 (202)
Q Consensus 4 i~~~F~~A~~----~~P~Ii~iDeiD~-l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~-----~ 73 (202)
++++++.+.. ...-||+|||+|. +.. ...+.|+..+..... +.++|+.+++- .
T Consensus 61 ~~~l~~~~~~~plf~~~kvvii~~~~~kl~~------------~~~~aLl~~le~p~~-----~~~~il~~~~~~~~~~~ 123 (343)
T 1jr3_D 61 WNAIFSLCQAMSLFASRQTLLLLLPENGPNA------------AINEQLLTLTGLLHD-----DLLLIVRGNKLSKAQEN 123 (343)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECCSSCCCT------------THHHHHHHHHTTCBT-----TEEEEEEESCCCTTTTT
T ss_pred HHHHHHHhcCcCCccCCeEEEEECCCCCCCh------------HHHHHHHHHHhcCCC-----CeEEEEEcCCCChhhHh
Confidence 4556655542 2356999999987 521 135667877776443 44555555442 2
Q ss_pred CCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 74 WDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 74 ~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
..+.+++.+|. ..+.+..|+..+....++..+...++. +...+..|+..+.| +.+++.+.++...
T Consensus 124 ~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~ 189 (343)
T 1jr3_D 124 AAWFTALANRS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLS 189 (343)
T ss_dssp SHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHH
Confidence 45677877765 578888889888888888888655433 23346667776654 5555555555543
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.37 E-value=0.028 Score=45.35 Aligned_cols=117 Identities=16% Similarity=0.119 Sum_probs=66.5
Q ss_pred HHHHHHHhhhC--CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH---
Q psy3540 4 VQRTNVPSNSY--RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE--- 78 (202)
Q Consensus 4 i~~~F~~A~~~--~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~--- 78 (202)
+..++...... .|.+|+|||++.+...... + ....+..+ ++.. .++.+|.|++....+..
T Consensus 124 ~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~----~-~~~~l~~~---~~~~-------~~~~~i~~g~~~~~l~~~l~ 188 (357)
T 2fna_A 124 FANLLESFEQASKDNVIIVLDEAQELVKLRGV----N-LLPALAYA---YDNL-------KRIKFIMSGSEMGLLYDYLR 188 (357)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC----C-CHHHHHHH---HHHC-------TTEEEEEEESSHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCeEEEEECHHHhhccCch----h-HHHHHHHH---HHcC-------CCeEEEEEcCchHHHHHHHh
Confidence 44555554443 4999999999998652111 1 01122222 3322 12455555554321121
Q ss_pred ------HHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHH
Q psy3540 79 ------AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLAR 137 (202)
Q Consensus 79 ------al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~ 137 (202)
.+..|+...+.++..+.++-.+++...+.......+ +...+...|.|+.. -+..++.
T Consensus 189 ~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~ 251 (357)
T 2fna_A 189 VEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGF 251 (357)
T ss_dssp TTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHH
T ss_pred ccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHH
Confidence 122256678999999999999999887753332222 23788899988654 3555444
No 95
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.10 E-value=0.007 Score=43.23 Aligned_cols=67 Identities=7% Similarity=0.018 Sum_probs=39.6
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC-------CCcc
Q psy3540 5 QRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP-------WDID 77 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~-------~~ld 77 (202)
...|..| .+++|||||+|.+... ....|+..|.... ..+.+|+|||.+ ..+.
T Consensus 69 ~~~~~~a---~~g~l~ldei~~l~~~------------~q~~Ll~~l~~~~------~~~~~I~~t~~~~~~~~~~~~~~ 127 (145)
T 3n70_A 69 NDFIALA---QGGTLVLSHPEHLTRE------------QQYHLVQLQSQEH------RPFRLIGIGDTSLVELAASNHII 127 (145)
T ss_dssp HHHHHHH---TTSCEEEECGGGSCHH------------HHHHHHHHHHSSS------CSSCEEEEESSCHHHHHHHSCCC
T ss_pred hcHHHHc---CCcEEEEcChHHCCHH------------HHHHHHHHHhhcC------CCEEEEEECCcCHHHHHHcCCCC
Confidence 4455555 4579999999998431 2345666664433 336788888874 2345
Q ss_pred HHHHhccc-ceeeecC
Q psy3540 78 EAFRRRFE-KRVYIPL 92 (202)
Q Consensus 78 ~al~rrf~-~~i~i~~ 92 (202)
+.+..|+. ..|++|+
T Consensus 128 ~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 128 AELYYCFAMTQIACLP 143 (145)
T ss_dssp HHHHHHHHHHEEECCC
T ss_pred HHHHHHhcCCEEeCCC
Confidence 55555543 2355543
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.07 E-value=0.041 Score=44.30 Aligned_cols=110 Identities=14% Similarity=0.138 Sum_probs=63.3
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH---------HHHhccc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE---------AFRRRFE 85 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~---------al~rrf~ 85 (202)
.|.+|+|||++.+..... ... ..+...|...++... ++.+|.|++....+.. .+..|+.
T Consensus 128 ~~~vlvlDe~~~~~~~~~--~~~---~~~~~~L~~~~~~~~-------~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~ 195 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGS--RGG---KELLALFAYAYDSLP-------NLKIILTGSEVGLLHDFLKITDYESPLYGRIA 195 (350)
T ss_dssp SCEEEEEETGGGGGGBTT--TTT---HHHHHHHHHHHHHCT-------TEEEEEEESSHHHHHHHHCTTCTTSTTTTCCC
T ss_pred CCEEEEEeCHHHHhccCc--cch---hhHHHHHHHHHHhcC-------CeEEEEECCcHHHHHHHHhhcCCCCccccCcc
Confidence 599999999999864210 001 123333333344321 2444445443211121 1223556
Q ss_pred ceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHH
Q psy3540 86 KRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLAR 137 (202)
Q Consensus 86 ~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~ 137 (202)
..+.+++.+.++-.++++..+...... ....+..+...|.|+-. -+..++.
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 789999999999999998877543322 23457788888988654 3555543
No 97
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.82 E-value=0.0034 Score=51.44 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=39.6
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
++.+++...... +|+||+++.+.......+..+...+...+++..|+++... .++.+|++|| |...|+++.
T Consensus 173 l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~----~gvtVIlttn-p~s~deal~ 243 (331)
T 2vhj_A 173 VDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAAS----RGCVVIASLN-PTSNDDKIV 243 (331)
T ss_dssp HHHHHHHHHHCS--EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHH----HTCEEEEECC-CSSCSSSHH
T ss_pred HHHHHHHHhhCC--EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhh----CCCEEEEEeC-CcccchhHH
Confidence 344555565544 9999999999765432111111234455666666655443 4567888888 677777653
No 98
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.11 E-value=0.038 Score=39.23 Aligned_cols=68 Identities=10% Similarity=0.167 Sum_probs=39.3
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC-CC----ccHH
Q psy3540 5 QRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP-WD----IDEA 79 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~-~~----ld~a 79 (202)
...|..|. +.+|||||+|.+... ....|+..++.... .++.+|+|||.+ +. +++.
T Consensus 68 ~~~~~~a~---~~~l~lDei~~l~~~------------~q~~Ll~~l~~~~~-----~~~~iI~~tn~~~~~~~~~~~~~ 127 (143)
T 3co5_A 68 MELLQKAE---GGVLYVGDIAQYSRN------------IQTGITFIIGKAER-----CRVRVIASCSYAAGSDGISCEEK 127 (143)
T ss_dssp HHHHHHTT---TSEEEEEECTTCCHH------------HHHHHHHHHHHHTT-----TTCEEEEEEEECTTTC--CHHHH
T ss_pred hhHHHhCC---CCeEEEeChHHCCHH------------HHHHHHHHHHhCCC-----CCEEEEEecCCCHHHHHhCccHH
Confidence 34555553 579999999998432 22334555554322 346778888864 33 4445
Q ss_pred HHhcc-cceeeecC
Q psy3540 80 FRRRF-EKRVYIPL 92 (202)
Q Consensus 80 l~rrf-~~~i~i~~ 92 (202)
+..|| ...|.+|+
T Consensus 128 L~~rl~~~~i~lPp 141 (143)
T 3co5_A 128 LAGLFSESVVRIPP 141 (143)
T ss_dssp HHHHSSSEEEEECC
T ss_pred HHHHhcCcEEeCCC
Confidence 55564 34566654
No 99
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.13 E-value=0.17 Score=42.17 Aligned_cols=115 Identities=22% Similarity=0.229 Sum_probs=58.6
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhC-----CCCCCCCCceEEEEEecCCC-------CCccHHHHhc
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG-----LNSSLYEDKIIMILAATNHP-------WDIDEAFRRR 83 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~-----~~~~~~~~~~v~viatTn~~-------~~ld~al~rr 83 (202)
..+||||||+.+-. .+...|+..++. +.+.....-.+.+|+|||.. ..+.+.+.-|
T Consensus 232 ~gtlfldei~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~r 299 (387)
T 1ny5_A 232 GGTLFLDEIGELSL------------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYR 299 (387)
T ss_dssp TSEEEEESGGGCCH------------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHH
T ss_pred CcEEEEcChhhCCH------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHh
Confidence 46999999999832 133445555443 11110011346789999962 2233344434
Q ss_pred ccceeeecCCCH----HHHHHHHHHHhcCc----ccC-CcccHHHHHHHc-cCCC--HHHHHHHHHHHHHHH
Q psy3540 84 FEKRVYIPLPNE----WARYQLLTLCLEGV----VID-VNLDFHKISKML-EGYT--GSDIANLARDAAMMS 143 (202)
Q Consensus 84 f~~~i~i~~P~~----~~R~~il~~~l~~~----~~~-~~~~~~~la~~t-~g~s--~~dl~~l~~~A~~~a 143 (202)
+. .+.+.+|.. +....+.++++... ... ..++-..+.... ..|. .++|++++++|+..+
T Consensus 300 l~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 300 LG-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred hc-CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 42 333444544 44455566666432 111 123333333222 2343 458999988887644
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.87 E-value=0.041 Score=39.58 Aligned_cols=63 Identities=16% Similarity=0.289 Sum_probs=33.8
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc--HHHHhcccceeeecC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID--EAFRRRFEKRVYIPL 92 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld--~al~rrf~~~i~i~~ 92 (202)
.|.+|+|||++.+.... ...+-.++ +.+... ...+++|.+...|..+. +.+++|+..-..+.+
T Consensus 83 ~~~lLilDE~~~~~~~~---------~~~l~~li---~~~~~~---g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE---------QALLFSIF---NRFRNS---GKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp GCSEEEEESTTCCCSHH---------HHHHHHHH---HHHHHH---TCCEEEEEESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred CCCEEEEeCccccChHH---------HHHHHHHH---HHHHHc---CCcEEEEECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 58899999998853321 22233333 332221 01234444433565444 888888876655543
No 101
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.72 E-value=0.05 Score=54.32 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=47.0
Q ss_pred hHHHHHHHHhhhCCCeEEEEcccccccccc---CCCCcc--hHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMR---GSDSEH--EASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH 72 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r---~~~~~~--~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~ 72 (202)
+.++.++..++..+|++|+||+++.+++.+ +..+++ ....|+++++|..|.++... .+++|| +||.
T Consensus 1492 ~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~----~~v~VI-~tNq 1562 (2050)
T 3cmu_A 1492 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ----SNTLLI-FINQ 1562 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT----TTCEEE-EEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHh----CCcEEE-EEcc
Confidence 457788889999999999999999999853 211221 12467889999888887765 455555 4443
No 102
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.22 E-value=3.1 Score=43.13 Aligned_cols=129 Identities=10% Similarity=0.090 Sum_probs=72.9
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHH---HHHHhCCC------CC-CCCCceEEEEEecC-
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAEL---LIQMDGLN------SS-LYEDKIIMILAATN- 71 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~l---l~~ld~~~------~~-~~~~~~v~viatTn- 71 (202)
.+.++|.-|... .+.++|||++.+-. +....+..++ +..+..-. +. ..-+....|++|.|
T Consensus 686 ~lg~~~~g~~~~-Gaw~~~DE~nr~~~--------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP 756 (2695)
T 4akg_A 686 VLSRLLVGITQI-GAWGCFDEFNRLDE--------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP 756 (2695)
T ss_dssp HHHHHHHHHHHH-TCEEEEETTTSSCH--------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC
T ss_pred HhhHHHHHHHhc-CCEeeehhhhhcCh--------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC
Confidence 456777777654 58999999988632 2222222222 22221111 00 01124456778888
Q ss_pred ---CCCCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCc-----ccHHH-HHHHcc-----CCCHHHHHHHHH
Q psy3540 72 ---HPWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVN-----LDFHK-ISKMLE-----GYTGSDIANLAR 137 (202)
Q Consensus 72 ---~~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~-----~~~~~-la~~t~-----g~s~~dl~~l~~ 137 (202)
....|++++++|| +.+.+..||.+...+|+-.-.+ ...... +.+-. +.+... .|.-+.|+.+..
T Consensus 757 gy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l~s~G-f~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~ 834 (2695)
T 4akg_A 757 GYNGRSELPENLKKSF-REFSMKSPQSGTIAEMILQIMG-FEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLR 834 (2695)
T ss_dssp CSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHH
T ss_pred CccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHH
Confidence 5668999999999 5799999999888887543322 111100 11111 222222 267888988888
Q ss_pred HHHHH
Q psy3540 138 DAAMM 142 (202)
Q Consensus 138 ~A~~~ 142 (202)
.|...
T Consensus 835 ~ag~l 839 (2695)
T 4akg_A 835 NCSPL 839 (2695)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76543
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.92 E-value=0.35 Score=50.44 Aligned_cols=85 Identities=14% Similarity=0.161 Sum_probs=54.9
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhC--CCCC----CCCCceEEEEEecCCC-----CCccHHHHhcc
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG--LNSS----LYEDKIIMILAATNHP-----WDIDEAFRRRF 84 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~--~~~~----~~~~~~v~viatTn~~-----~~ld~al~rrf 84 (202)
..|+||||++--.... -+. +..+.-|.+.||. +... ...-.++.+|||+|.| ..|+++++|||
T Consensus 1375 ~~VlFiDDiNmp~~D~--yGt----Q~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTDK--YGT----QRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA 1448 (3245)
T ss_dssp EEEEEETTTTCCCCCT--TSC----CHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC
T ss_pred eEEEEecccCCCCccc--ccc----ccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc
Confidence 3699999998632221 111 1123333333332 1111 0112457899999988 46999999999
Q ss_pred cceeeecCCCHHHHHHHHHHHhc
Q psy3540 85 EKRVYIPLPNEWARYQLLTLCLE 107 (202)
Q Consensus 85 ~~~i~i~~P~~~~R~~il~~~l~ 107 (202)
.. ++++.|+.++-..|+..++.
T Consensus 1449 ~v-i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1449 PI-LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CE-EECCCCCHHHHHHHHHHHHH
T ss_pred eE-EEeCCCCHHHHHHHHHHHHH
Confidence 65 99999999999999877664
No 104
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.15 E-value=0.32 Score=40.24 Aligned_cols=113 Identities=25% Similarity=0.323 Sum_probs=56.6
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhC-----CCCCCCCCceEEEEEecCCC-------CCccHHHHhc
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG-----LNSSLYEDKIIMILAATNHP-------WDIDEAFRRR 83 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~-----~~~~~~~~~~v~viatTn~~-------~~ld~al~rr 83 (202)
...||||||+.+-. .+-..|+..++. +.+.....-.+-+|+|||.. ....+.|..|
T Consensus 223 ~gtlfldei~~l~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~r 290 (368)
T 3dzd_A 223 QGTLFLDEVGELDQ------------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYR 290 (368)
T ss_dssp TSEEEEETGGGSCH------------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHH
T ss_pred CCeEEecChhhCCH------------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHH
Confidence 35899999999832 233455555542 11110001246688888852 1222334444
Q ss_pred ccc-eeeecCCCH--HHHHHHHHHHhcCcc----cC-Cccc---HHHHHHHc-cCCCHHHHHHHHHHHHH
Q psy3540 84 FEK-RVYIPLPNE--WARYQLLTLCLEGVV----ID-VNLD---FHKISKML-EGYTGSDIANLARDAAM 141 (202)
Q Consensus 84 f~~-~i~i~~P~~--~~R~~il~~~l~~~~----~~-~~~~---~~~la~~t-~g~s~~dl~~l~~~A~~ 141 (202)
+.. .|++|+..+ +....++.+++.... .. ..++ +..|.... +| +.++|++++++|+.
T Consensus 291 l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpG-NvreL~n~i~~~~~ 359 (368)
T 3dzd_A 291 LSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKG-NVRELKNLIERAVI 359 (368)
T ss_dssp HTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTT-HHHHHHHHHHHHHH
T ss_pred hCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCc-HHHHHHHHHHHHHH
Confidence 432 455555444 455666677764321 11 1232 33344333 22 44677777777654
No 105
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=90.27 E-value=0.84 Score=40.14 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=53.0
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC--CccHHHHhcccceeeecCCC
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW--DIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~--~ld~al~rrf~~~i~i~~P~ 94 (202)
.+|+|||+..++.... ......+..+. .... ..+|.+|.+|.+|. .|+..++.-|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~~-----~~~~~~L~~Ia----r~GR----a~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-----KKVEELIARIA----QKAR----AAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHTC-----HHHHHHHHHHH----HHCT----TTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhhh-----HHHHHHHHHHH----HHHh----hCCeEEEEEecCcccccccHHHHhhhccEEEEEcCC
Confidence 6899999998875321 11112222222 2222 26799999999998 89999998999999999999
Q ss_pred HHHHHHHHH
Q psy3540 95 EWARYQLLT 103 (202)
Q Consensus 95 ~~~R~~il~ 103 (202)
..+...||-
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 988887763
No 106
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.87 E-value=1.9 Score=35.53 Aligned_cols=74 Identities=8% Similarity=0.010 Sum_probs=48.0
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH--------HHHhccc
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE--------AFRRRFE 85 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~--------al~rrf~ 85 (202)
..|.++++||+..++... .......+..++..... .++.++.+|..|..+.. +++.-.+
T Consensus 261 ~~~~~i~iDEa~~~~~~~-----~~~~~~~l~~~~~~~Rk--------~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~ 327 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQ-----TPQAIAFLRDTSKRIRK--------YNGSLIVISQNVIDFLAPEVQRYGQALLDNPT 327 (392)
T ss_dssp CTTCEEEETTGGGGCCTT-----CTHHHHHHHHHHHHGGG--------GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCS
T ss_pred CccEEEEEecHHHHhCcC-----chHHHHHHHHHHHHhhh--------hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhh
Confidence 469999999999998632 11223344555554433 34577888999988864 5666777
Q ss_pred ceeeecCCCHHHHHHH
Q psy3540 86 KRVYIPLPNEWARYQL 101 (202)
Q Consensus 86 ~~i~i~~P~~~~R~~i 101 (202)
.+|.++.+. .++..+
T Consensus 328 ~~i~l~~~~-~~~~~~ 342 (392)
T 4ag6_A 328 YKLLLAQGE-KDLEAI 342 (392)
T ss_dssp EEEECSCCH-HHHHHH
T ss_pred hhheeCCCh-hhHHHH
Confidence 788887664 334333
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=87.60 E-value=0.71 Score=33.47 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=11.6
Q ss_pred CCCeEEEEcccccc
Q psy3540 14 YRVSTIFIDEVDSL 27 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l 27 (202)
..|.+|+|||++..
T Consensus 99 ~~~~llilDE~~~~ 112 (180)
T 3ec2_A 99 LNSPVLVLDDLGSE 112 (180)
T ss_dssp HTCSEEEEETCSSS
T ss_pred cCCCEEEEeCCCCC
Confidence 36899999999864
No 108
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.12 E-value=0.28 Score=40.84 Aligned_cols=71 Identities=11% Similarity=0.004 Sum_probs=45.9
Q ss_pred HhhhCCCeEEEEcccccccc-ccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh--cccc
Q psy3540 10 PSNSYRVSTIFIDEVDSLCS-MRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR--RFEK 86 (202)
Q Consensus 10 ~A~~~~P~Ii~iDeiD~l~~-~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r--rf~~ 86 (202)
.....+.+++++||++.+.. .++........ ....+...+||. +.|+++||+++.+ +++++ +++.
T Consensus 211 lg~~~q~~~~l~dd~~~~~~~~r~l~~~~~~~--~~~~l~~~ldG~---------v~v~~~tn~~~~l-~alf~pg~ld~ 278 (377)
T 1svm_A 211 LGVAIDQFLVVFEDVKGTGGESRDLPSGQGIN--NLDNLRDYLDGS---------VKVNLEKKHLNKR-TQIFPPGIVTM 278 (377)
T ss_dssp HGGGTTCSCEEETTCCCSTTTTTTCCCCSHHH--HHHTTHHHHHCS---------SCEEECCSSSCCE-EECCCCEEEEE
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccCcch--HHHHHHHHhcCC---------CeEeeccCchhhH-HHhhcCcccCh
Confidence 34445678889999999886 33221111111 234556666663 3578889999999 57776 8888
Q ss_pred eeeecC
Q psy3540 87 RVYIPL 92 (202)
Q Consensus 87 ~i~i~~ 92 (202)
.++...
T Consensus 279 ~~~~l~ 284 (377)
T 1svm_A 279 NEYSVP 284 (377)
T ss_dssp CSCCCC
T ss_pred hHHhhc
Confidence 777754
No 109
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=85.73 E-value=1.5 Score=38.04 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=53.2
Q ss_pred CCe-EEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC--CccHHHHhcccceeeec
Q psy3540 15 RVS-TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW--DIDEAFRRRFEKRVYIP 91 (202)
Q Consensus 15 ~P~-Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~--~ld~al~rrf~~~i~i~ 91 (202)
-|- +|+|||+..++... .. -...++..+-..... .++.+|.+|.+|. .++..++.-|...|.+.
T Consensus 296 lP~ivlvIDE~~~ll~~~-----~~----~~~~~l~~Lar~gRa----~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-----GK----KVEELIARLAQKARA----AGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-----HH----HHHHHHHHHHHHCGG----GTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhhh-----hH----HHHHHHHHHHHHhhh----CCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 464 89999998776421 11 122333333222222 4688889999987 68888888999999999
Q ss_pred CCCHHHHHHHHHH
Q psy3540 92 LPNEWARYQLLTL 104 (202)
Q Consensus 92 ~P~~~~R~~il~~ 104 (202)
..+..+...|+..
T Consensus 363 v~s~~dsr~ilg~ 375 (512)
T 2ius_A 363 VSSKIDSRTILDQ 375 (512)
T ss_dssp CSSHHHHHHHHSS
T ss_pred cCCHHHHHHhcCC
Confidence 9999998888753
No 110
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=81.81 E-value=10 Score=27.53 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=34.8
Q ss_pred hhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecC--CCCCccHHHHhccc-cee
Q psy3540 12 NSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATN--HPWDIDEAFRRRFE-KRV 88 (202)
Q Consensus 12 ~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn--~~~~ld~al~rrf~-~~i 88 (202)
-...|.++++||++-...-. ......+...++.. . ..+|.+|. +...+-..+..|-+ +.+
T Consensus 96 l~~~p~llilDEigp~~~ld---------~~~~~~l~~~l~~~-------~-~~~i~~~H~~h~~~~~~~i~~r~~~~i~ 158 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFS---------KKFRDLVRQIMHDP-------N-VNVVATIPIRDVHPLVKEIRRLPGAVLI 158 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGC---------HHHHHHHHHHHTCT-------T-SEEEEECCSSCCSHHHHHHHTCTTCEEE
T ss_pred cccCCCEEEEeCCCCcccCC---------HHHHHHHHHHHhcC-------C-CeEEEEEccCCCchHHHHHHhcCCcEEE
Confidence 46789999999976432211 22344555555551 1 22444553 33333345555543 556
Q ss_pred eecCCC
Q psy3540 89 YIPLPN 94 (202)
Q Consensus 89 ~i~~P~ 94 (202)
++...+
T Consensus 159 ~~~~~~ 164 (178)
T 1ye8_A 159 ELTPEN 164 (178)
T ss_dssp ECCTTT
T ss_pred EecCcC
Confidence 666555
No 111
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.56 E-value=2.2 Score=42.94 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=42.4
Q ss_pred HHHHHHHHhhh----CCCeEEEEcccccccc-cc--C--CCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecC
Q psy3540 3 EVQRTNVPSNS----YRVSTIFIDEVDSLCS-MR--G--SDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATN 71 (202)
Q Consensus 3 ~i~~~F~~A~~----~~P~Ii~iDeiD~l~~-~r--~--~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn 71 (202)
++.+++..++. ..|++|+||.+..+.. .. + .+...+...|.+++++..|..+... .++.||++..
T Consensus 794 ~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke----~~v~VI~l~Q 867 (2050)
T 3cmu_A 794 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ----SNTLLIFINQ 867 (2050)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT----TTCEEEEEEC
T ss_pred CHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHH----hCCEEEEecc
Confidence 35666666655 7899999999999986 22 1 1111133456678888888887765 4555555543
No 112
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=75.43 E-value=12 Score=32.26 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=48.9
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeec---
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIP--- 91 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~--- 91 (202)
.|.+|+|||++... .++.+. .+..||.||+.+..... + -+..+.++
T Consensus 236 ~~~LLVLDdv~~~~---------------------~l~~l~------~~~~ilvTsR~~~~~~~-~---~~~~~~v~~l~ 284 (591)
T 1z6t_A 236 PRSLLILDDVWDSW---------------------VLKAFD------SQCQILLTTRDKSVTDS-V---MGPKYVVPVES 284 (591)
T ss_dssp TTCEEEEEEECCHH---------------------HHHTTC------SSCEEEEEESCGGGGTT-C---CSCEEEEECCS
T ss_pred CCeEEEEeCCCCHH---------------------HHHHhc------CCCeEEEECCCcHHHHh-c---CCCceEeecCC
Confidence 79999999997410 122232 22456667776442211 0 13344554
Q ss_pred CCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCC
Q psy3540 92 LPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYT 128 (202)
Q Consensus 92 ~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s 128 (202)
..+.++-.++|.................|++.|.|+-
T Consensus 285 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 285 SLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp SCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 4688888888888875422122335678999998875
No 113
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=70.66 E-value=16 Score=30.29 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=51.7
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc--------HHHHhccc
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID--------EAFRRRFE 85 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld--------~al~rrf~ 85 (202)
..|.++++||+-.++.-. .+..++... .+ .++.++.+|..+..+. .+++.-+.
T Consensus 278 ~~~~~~~lDE~~~l~~~~-----------~l~~~~~~~---R~-----~g~~~~~~~Qs~~ql~~~yG~~~a~~i~~n~~ 338 (437)
T 1e9r_A 278 KRRLWLFIDELASLEKLA-----------SLADALTKG---RK-----AGLRVVAGLQSTSQLDDVYGVKEAQTLRASFR 338 (437)
T ss_dssp TCCEEEEESCGGGSCBCS-----------SHHHHHHHC---TT-----TTEEEEEEESCHHHHHHHHCHHHHHHHHTTCC
T ss_pred CccEEEEEEcccccccch-----------hHHHHHHHH---hc-----cCCEEEEEecCHHHHHHHHCHHHHHHHHhccC
Confidence 468999999999986521 133344433 22 5688889999988887 35666788
Q ss_pred ceeeecCC--CHHHHHHHHHHHhcC
Q psy3540 86 KRVYIPLP--NEWARYQLLTLCLEG 108 (202)
Q Consensus 86 ~~i~i~~P--~~~~R~~il~~~l~~ 108 (202)
.+|.++.+ +.+....+ ...++.
T Consensus 339 ~~i~~~~~~~d~~ta~~~-s~~lG~ 362 (437)
T 1e9r_A 339 SLVVLGGSRTDPKTNEDM-SLSLGE 362 (437)
T ss_dssp EEEEEECCTTCHHHHHHH-HHHHCE
T ss_pred cEEEEeCCCCCHHHHHHH-HHHcCc
Confidence 89999988 77776655 445544
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=67.95 E-value=5.2 Score=29.94 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=19.2
Q ss_pred HHHHHHhhhCCCeEEEEccccccccc
Q psy3540 5 QRTNVPSNSYRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iDeiD~l~~~ 30 (202)
..+.+.+....|.+|+||++-.+...
T Consensus 109 ~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 109 YQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHhcCCceEEEEeCchHHHHH
Confidence 33455556678999999999988754
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=67.09 E-value=5 Score=29.51 Aligned_cols=16 Identities=6% Similarity=0.258 Sum_probs=13.6
Q ss_pred CCeEEEEccccccccc
Q psy3540 15 RVSTIFIDEVDSLCSM 30 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~ 30 (202)
.|.+|+|||+-.+...
T Consensus 105 ~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 105 NFALVVVDSITAHYRA 120 (220)
T ss_dssp TEEEEEEECCCCCTTG
T ss_pred CCCEEEEcCcHHHhhh
Confidence 5999999999988643
No 116
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=63.26 E-value=11 Score=28.25 Aligned_cols=74 Identities=11% Similarity=0.044 Sum_probs=40.2
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc-----HHHH
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID-----EAFR 81 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld-----~al~ 81 (202)
+........|.+|++||.-++..... +.......+..++..+.. .+..||.+|...+... +.+.
T Consensus 127 ~~~~l~~~~p~~lilDep~~~ld~~~---d~~~~~~~l~~l~~~l~~--------~g~tii~vtH~~~~~~~~~~~~~i~ 195 (251)
T 2ehv_A 127 IYRVVKAINAKRLVIDSIPSIALRLE---EERKIREVLLKLNTILLE--------MGVTTILTTEAPDPQHGKLSRYGIE 195 (251)
T ss_dssp HHHHHHHTTCSEEEEECHHHHHHHSS---SGGGHHHHHHHHHHHHHH--------HCCEEEEEECCC----CCSSSSSCG
T ss_pred HHHHHHhhCCCEEEEccHHHHHhhcC---CHHHHHHHHHHHHHHHHH--------CCCeEEEEECCCCCCcccccccChh
Confidence 33444568999999999988765321 122233445556655533 2245666777665542 2223
Q ss_pred hcc-cceeeec
Q psy3540 82 RRF-EKRVYIP 91 (202)
Q Consensus 82 rrf-~~~i~i~ 91 (202)
..+ |.++.+.
T Consensus 196 ~~~aD~vi~l~ 206 (251)
T 2ehv_A 196 EFIARGVIVLD 206 (251)
T ss_dssp GGGCSEEEEEE
T ss_pred hEeeeEEEEEe
Confidence 345 7777664
No 117
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=63.15 E-value=35 Score=31.93 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=52.1
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecC-C
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPL-P 93 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~-P 93 (202)
.+.+|+||+++... .+..+.. +.-||.||+.+.-.... ..-...+.++. .
T Consensus 236 ~~~LlvlDd~~~~~---------------------~~~~~~~------~~~ilvTtR~~~~~~~~--~~~~~~~~~~~~l 286 (1249)
T 3sfz_A 236 PRSLLILDDVWDPW---------------------VLKAFDN------QCQILLTTRDKSVTDSV--MGPKHVVPVESGL 286 (1249)
T ss_dssp CSCEEEEESCCCHH---------------------HHTTTCS------SCEEEEEESSTTTTTTC--CSCBCCEECCSSC
T ss_pred CCEEEEEecCCCHH---------------------HHHhhcC------CCEEEEEcCCHHHHHhh--cCCceEEEecCCC
Confidence 48999999997431 1233322 23577788876433110 12345677775 7
Q ss_pred CHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCC
Q psy3540 94 NEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYT 128 (202)
Q Consensus 94 ~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s 128 (202)
+.++-.++|..+.............+|++++.|+-
T Consensus 287 ~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 287 GREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp CHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred CHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 88888888887774433222234678999998874
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=61.92 E-value=6.1 Score=29.16 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=17.2
Q ss_pred HHHHhhhCCCe--EEEEcccccccc
Q psy3540 7 TNVPSNSYRVS--TIFIDEVDSLCS 29 (202)
Q Consensus 7 ~F~~A~~~~P~--Ii~iDeiD~l~~ 29 (202)
+.+.+....|. +|+|||...+..
T Consensus 113 ~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 113 VIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp HHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred HHHHHHhhCCCceEEEEECchHhhc
Confidence 34445556898 999999998864
No 119
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=61.58 E-value=14 Score=30.33 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=26.2
Q ss_pred hhhCCCeEEEEccccccccccCCCC---cc--hHHHHHHHHHHHHHhCCCC
Q psy3540 11 SNSYRVSTIFIDEVDSLCSMRGSDS---EH--EASRRFKAELLIQMDGLNS 56 (202)
Q Consensus 11 A~~~~P~Ii~iDeiD~l~~~r~~~~---~~--~~~~~~~~~ll~~ld~~~~ 56 (202)
.+...|.+|+||.+..+.+.....+ +. +...+...+++..|..+..
T Consensus 148 ~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~ 198 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILS 198 (366)
T ss_dssp HTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999986332111 10 1222455666666655444
No 120
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=56.68 E-value=8.1 Score=28.52 Aligned_cols=76 Identities=13% Similarity=0.085 Sum_probs=34.9
Q ss_pred hCCCeEEEEccccccccccCCCC-cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHh-cccceeee
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDS-EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR-RFEKRVYI 90 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~r-rf~~~i~i 90 (202)
...|.+|++||.-..+...-+++ ......+....++..+..+... .++.||.+|..... +..+.. ..|..+.+
T Consensus 123 ~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~----~g~tvi~vtH~~~~-~g~~~~~~~d~~l~l 197 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL----YDIAVFVTNQVQAN-GGHILAHSATLRVYL 197 (231)
T ss_dssp SSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHH----HTCEEEEEEECC----------CCSEEEEE
T ss_pred CCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHH----CCCeEEEEeecccC-cchhhHhhceEEEEE
Confidence 67899999999988764432221 1111111223333333333221 23456666665444 333333 45666666
Q ss_pred cCC
Q psy3540 91 PLP 93 (202)
Q Consensus 91 ~~P 93 (202)
...
T Consensus 198 ~~~ 200 (231)
T 4a74_A 198 RKG 200 (231)
T ss_dssp EEC
T ss_pred Eec
Confidence 543
No 121
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=55.75 E-value=11 Score=31.47 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=34.3
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccCCC-CcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC
Q psy3540 5 QRTNVPSNSYRVSTIFIDEVDSLCSMRGSD-SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH 72 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~-~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~ 72 (202)
.++........|.+|+||++-.++...-++ ++.....+.+..++..|..+... .++.||.++..
T Consensus 263 ~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake----~gitVIlv~Hv 327 (400)
T 3lda_A 263 DAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQ----FGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHH----HCCEEEEEEEC
T ss_pred HHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHH----cCCEEEEEEee
Confidence 344445556789999999998887643221 11122234445666665555432 33455555544
No 122
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=53.71 E-value=19 Score=27.94 Aligned_cols=54 Identities=11% Similarity=-0.004 Sum_probs=29.7
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~l 76 (202)
.+..|-...|.||++||--+=+ + ......++..+..+... +..||.+|..++.+
T Consensus 174 ~iAraL~~~p~lLlLDEPts~L-------D----~~~~~~l~~~l~~l~~~-----g~tviivtHd~~~~ 227 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGL-------D----IDALKVVADGVNSLRDG-----KRSFIIVTHYQRIL 227 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTC-------C----HHHHHHHHHHHHTTCCS-----SCEEEEECSSGGGG
T ss_pred HHHHHHHhCCCEEEEeCCCCCC-------C----HHHHHHHHHHHHHHHhc-----CCEEEEEeeCHHHH
Confidence 3445556789999999953321 1 12234455555555432 23456677765543
No 123
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=53.65 E-value=6.9 Score=31.89 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=17.0
Q ss_pred HHhhhCCCeEEEEcccccccc
Q psy3540 9 VPSNSYRVSTIFIDEVDSLCS 29 (202)
Q Consensus 9 ~~A~~~~P~Ii~iDeiD~l~~ 29 (202)
..++...|.+|+||++..+.+
T Consensus 133 ~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHHTTTCCSEEEEECGGGCCC
T ss_pred HHHhcCCCCEEEEcChHhhcc
Confidence 344467799999999999985
No 124
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=53.56 E-value=26 Score=27.19 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=14.1
Q ss_pred HHhhhCCCeEEEEcccccccc
Q psy3540 9 VPSNSYRVSTIFIDEVDSLCS 29 (202)
Q Consensus 9 ~~A~~~~P~Ii~iDeiD~l~~ 29 (202)
..|..+.|.+|+|||.-.+..
T Consensus 141 a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 141 YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHTTCCSEEEEEEEC----
T ss_pred HHHHhcCCCEEEEcCccccCC
Confidence 344677899999999998763
No 125
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=52.28 E-value=38 Score=21.92 Aligned_cols=20 Identities=5% Similarity=-0.102 Sum_probs=14.4
Q ss_pred HHHHHHHhhhCCCeEEEEcc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDE 23 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDe 23 (202)
..+++.......|.+|++|-
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~ 59 (130)
T 3eod_A 40 GVDALELLGGFTPDLMICDI 59 (130)
T ss_dssp HHHHHHHHTTCCCSEEEECC
T ss_pred HHHHHHHHhcCCCCEEEEec
Confidence 34566666777899999874
No 126
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=50.75 E-value=8.5 Score=30.76 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=19.8
Q ss_pred HHHHHHhhh-CCCeEEEEccccccccc
Q psy3540 5 QRTNVPSNS-YRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 5 ~~~F~~A~~-~~P~Ii~iDeiD~l~~~ 30 (202)
..+....+. ..|.+|+||.+..+...
T Consensus 192 ~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 192 DDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 345555566 78999999999999753
No 127
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=49.98 E-value=18 Score=27.73 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.||++||--+
T Consensus 153 ~iAraL~~~p~lllLDEPts 172 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDS 172 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGG
T ss_pred HHHHHHHcCCCEEEEeCCCc
Confidence 34455567899999999543
No 128
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=49.51 E-value=36 Score=25.77 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=32.6
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCC---CCC----ceEEEEEecCCC---CCccHHHHhccc
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL---YED----KIIMILAATNHP---WDIDEAFRRRFE 85 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~---~~~----~~v~viatTn~~---~~ld~al~rrf~ 85 (202)
..||+|||+|.-+ .+.+-..+-+.+||..-.. .++ ..--+|.|||.+ +..-+.|.+|+.
T Consensus 104 ~kIiiLDEad~~~-----------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~ 172 (212)
T 1tue_A 104 TKVAMLDDATTTC-----------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRIT 172 (212)
T ss_dssp CSSEEEEEECHHH-----------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCE
T ss_pred CCEEEEECCCchh-----------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEE
Confidence 3489999998311 1222345566677752100 000 123466788873 333355666663
Q ss_pred ceeeec
Q psy3540 86 KRVYIP 91 (202)
Q Consensus 86 ~~i~i~ 91 (202)
++.++
T Consensus 173 -~f~F~ 177 (212)
T 1tue_A 173 -VFEFP 177 (212)
T ss_dssp -EEECC
T ss_pred -EEEcC
Confidence 45554
No 129
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=48.99 E-value=24 Score=25.86 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=12.1
Q ss_pred CCeEEEEcccccccc
Q psy3540 15 RVSTIFIDEVDSLCS 29 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~ 29 (202)
.-.+|++||+|.+..
T Consensus 150 ~~~~lViDEah~~~~ 164 (219)
T 1q0u_A 150 TAHILVVDEADLMLD 164 (219)
T ss_dssp GCCEEEECSHHHHHH
T ss_pred cceEEEEcCchHHhh
Confidence 357899999999864
No 130
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=48.48 E-value=19 Score=27.57 Aligned_cols=32 Identities=13% Similarity=0.272 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Q psy3540 167 PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 201 (202)
Q Consensus 167 ~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~ 201 (202)
.++.+|+...+.+- .+.+++...++|.++||+
T Consensus 201 L~~~~~l~~~~~~~---~~~~~~~~~~~~~~~yg~ 232 (232)
T 3mjd_A 201 VTNFESIFEYVKEN---LDETMIDKFKQYRQKYGS 232 (232)
T ss_dssp EEEHHHHHHHHHHH---SCHHHHHHHHHHHHHHBC
T ss_pred EEeHHHHHHHHHhh---CCHHHHHHHHHHHHHhCc
Confidence 46788998888777 689999999999999996
No 131
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=47.86 E-value=12 Score=29.27 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=13.9
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.||++||-
T Consensus 153 ~iAraL~~~P~lLlLDEP 170 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEP 170 (275)
T ss_dssp HHHHHHTTCCSEEEEECT
T ss_pred HHHHHHHcCCCEEEEECc
Confidence 445566678999999994
No 132
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=46.90 E-value=16 Score=28.45 Aligned_cols=19 Identities=5% Similarity=0.055 Sum_probs=14.2
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.||++||--
T Consensus 166 ~lAraL~~~p~lllLDEPt 184 (271)
T 2ixe_A 166 ALARALIRKPRLLILDNAT 184 (271)
T ss_dssp HHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHhcCCCEEEEECCc
Confidence 3455556789999999953
No 133
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=46.67 E-value=28 Score=28.29 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=13.9
Q ss_pred HhhhCC-CeEEEEccccccc
Q psy3540 10 PSNSYR-VSTIFIDEVDSLC 28 (202)
Q Consensus 10 ~A~~~~-P~Ii~iDeiD~l~ 28 (202)
.|-... |.++++||.++=+
T Consensus 299 ~~l~~~~~~~lllDEp~~~L 318 (371)
T 3auy_A 299 NALIGNRVECIILDEPTVYL 318 (371)
T ss_dssp HHHHSSCCSEEEEESTTTTC
T ss_pred HHHhcCCCCeEEEeCCCCcC
Confidence 333567 8999999987644
No 134
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=45.07 E-value=13 Score=26.89 Aligned_cols=14 Identities=14% Similarity=0.520 Sum_probs=10.5
Q ss_pred CCeEEEEccccccc
Q psy3540 15 RVSTIFIDEVDSLC 28 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~ 28 (202)
.+.+|+|||++...
T Consensus 115 ~~~~lilDei~~~~ 128 (202)
T 2w58_A 115 KVPVLMLDDLGAEA 128 (202)
T ss_dssp HSSEEEEEEECCC-
T ss_pred CCCEEEEcCCCCCc
Confidence 35699999997764
No 135
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=43.85 E-value=38 Score=27.63 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=28.3
Q ss_pred hhhCCCeEEEEccccccccccC---CCCcc--hHHHHHHHHHHHHHhCCCCC
Q psy3540 11 SNSYRVSTIFIDEVDSLCSMRG---SDSEH--EASRRFKAELLIQMDGLNSS 57 (202)
Q Consensus 11 A~~~~P~Ii~iDeiD~l~~~r~---~~~~~--~~~~~~~~~ll~~ld~~~~~ 57 (202)
.+...|.+++||.+-.+++... ..++. ....+.+++++..|..+...
T Consensus 135 ~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~ 186 (356)
T 3hr8_A 135 VRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNK 186 (356)
T ss_dssp HHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999999999886211 11111 12345666777666665443
No 136
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=43.33 E-value=9.3 Score=29.13 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 155 ~iAral~~~p~llllDEP 172 (235)
T 3tif_A 155 AIARALANNPPIILADQP 172 (235)
T ss_dssp HHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHcCCCEEEEeCC
Confidence 455566678999999994
No 137
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=42.74 E-value=28 Score=25.83 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=11.6
Q ss_pred CeEEEEcccccccc
Q psy3540 16 VSTIFIDEVDSLCS 29 (202)
Q Consensus 16 P~Ii~iDeiD~l~~ 29 (202)
-.+|++||+|.+..
T Consensus 167 ~~~lViDEah~~~~ 180 (230)
T 2oxc_A 167 IRLFILDEADKLLE 180 (230)
T ss_dssp CCEEEESSHHHHHS
T ss_pred CCEEEeCCchHhhc
Confidence 35899999999864
No 138
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=42.40 E-value=45 Score=24.04 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=11.4
Q ss_pred CCCeEEEEccccccc
Q psy3540 14 YRVSTIFIDEVDSLC 28 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~ 28 (202)
..|.++++||.++-+
T Consensus 85 ~~~~~llLDEp~a~L 99 (173)
T 3kta_B 85 KPAPFYLFDEIDAHL 99 (173)
T ss_dssp SCCSEEEEESTTTTC
T ss_pred CCCCEEEECCCccCC
Confidence 345699999988754
No 139
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=42.08 E-value=14 Score=24.29 Aligned_cols=20 Identities=10% Similarity=0.336 Sum_probs=16.2
Q ss_pred HHhhhCCCeEEEEccccccc
Q psy3540 9 VPSNSYRVSTIFIDEVDSLC 28 (202)
Q Consensus 9 ~~A~~~~P~Ii~iDeiD~l~ 28 (202)
+.|+.++|.|+|+|+-..+.
T Consensus 72 ~e~~~~~P~vV~vd~~N~i~ 91 (96)
T 1vc3_B 72 EEARNLKPTVVLVDERNRIL 91 (96)
T ss_dssp HHHTTCCCEEEEECTTCCEE
T ss_pred HHHhcCCCEEEEECCCCCEE
Confidence 56788999999999866554
No 140
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=41.94 E-value=16 Score=24.10 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.3
Q ss_pred HHhhhCCCeEEEEcccccccc
Q psy3540 9 VPSNSYRVSTIFIDEVDSLCS 29 (202)
Q Consensus 9 ~~A~~~~P~Ii~iDeiD~l~~ 29 (202)
+.|+.++|.|+|+|+-..+..
T Consensus 70 ~e~~~~~P~vV~vd~~N~i~~ 90 (97)
T 1uhe_A 70 DEINAHKPSIVLVDEKNEILE 90 (97)
T ss_dssp HHHHHCCCEEEEECTTSCEEE
T ss_pred HHHhcCCCEEEEECCCCCEEE
Confidence 567889999999999777654
No 141
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=40.69 E-value=13 Score=28.64 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 138 ~lAraL~~~p~lllLDEP 155 (253)
T 2nq2_C 138 LIARAIASECKLILLDEP 155 (253)
T ss_dssp HHHHHHHTTCSEEEESSS
T ss_pred HHHHHHHcCCCEEEEeCC
Confidence 445566679999999995
No 142
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=40.54 E-value=22 Score=21.92 Aligned_cols=12 Identities=8% Similarity=0.290 Sum_probs=10.4
Q ss_pred CCcHHHHHHHHH
Q psy3540 167 PVTEKDFREAIA 178 (202)
Q Consensus 167 ~it~~df~~Al~ 178 (202)
.++.+|+..|++
T Consensus 58 ~Lt~~DI~~Alk 69 (70)
T 1taf_B 58 KLSVRDIDMSLK 69 (70)
T ss_dssp SBCHHHHHHHHC
T ss_pred eecHHHHHHHHc
Confidence 799999999874
No 143
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=40.47 E-value=12 Score=29.61 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=18.4
Q ss_pred HHHHHhhh-CCCeEEEEccccccccc
Q psy3540 6 RTNVPSNS-YRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 6 ~~F~~A~~-~~P~Ii~iDeiD~l~~~ 30 (202)
.+....+. ..|.+|+||.+..++..
T Consensus 194 ~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 194 KIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp THHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred HHHHHHhhccCccEEEEECcHHHHHH
Confidence 34444555 67899999999998753
No 144
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=40.35 E-value=24 Score=26.42 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=12.2
Q ss_pred CCeEEEEcccccccc
Q psy3540 15 RVSTIFIDEVDSLCS 29 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~ 29 (202)
.-..|+|||+|.+..
T Consensus 176 ~~~~lViDEah~l~~ 190 (242)
T 3fe2_A 176 RTTYLVLDEADRMLD 190 (242)
T ss_dssp TCCEEEETTHHHHHH
T ss_pred cccEEEEeCHHHHhh
Confidence 346899999998864
No 145
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=39.66 E-value=11 Score=29.45 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=9.1
Q ss_pred CCeEEEEccc
Q psy3540 15 RVSTIFIDEV 24 (202)
Q Consensus 15 ~P~Ii~iDei 24 (202)
.|.||++||-
T Consensus 165 ~p~lLllDEP 174 (266)
T 4g1u_C 165 TPRWLFLDEP 174 (266)
T ss_dssp CCEEEEECCC
T ss_pred CCCEEEEeCc
Confidence 8999999994
No 146
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=39.38 E-value=18 Score=24.02 Aligned_cols=22 Identities=14% Similarity=0.471 Sum_probs=17.2
Q ss_pred HHhhhCCCeEEEEccccccccc
Q psy3540 9 VPSNSYRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 9 ~~A~~~~P~Ii~iDeiD~l~~~ 30 (202)
+.|+.++|.|+|+|+=..+...
T Consensus 71 ~e~~~~~P~vv~vd~~N~i~~~ 92 (102)
T 3plx_B 71 EEAKTFKPKVVFVDENNTATKI 92 (102)
T ss_dssp HHHHHCCCEEEEECTTSCEEEE
T ss_pred HHHhcCCCEEEEECCCCcEEEE
Confidence 5678899999999996665543
No 147
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=39.04 E-value=30 Score=24.90 Aligned_cols=15 Identities=47% Similarity=0.631 Sum_probs=12.2
Q ss_pred CCeEEEEcccccccc
Q psy3540 15 RVSTIFIDEVDSLCS 29 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~ 29 (202)
.-.+|++||+|.+..
T Consensus 146 ~~~~lViDEah~~~~ 160 (206)
T 1vec_A 146 HVQMIVLDEADKLLS 160 (206)
T ss_dssp TCCEEEEETHHHHTS
T ss_pred cCCEEEEEChHHhHh
Confidence 457899999999864
No 148
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=38.99 E-value=1.1e+02 Score=23.41 Aligned_cols=19 Identities=11% Similarity=-0.017 Sum_probs=14.5
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 148 ~lAraL~~~p~lllLDEPt 166 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPL 166 (266)
T ss_dssp HHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHHcCCCEEEEcCcc
Confidence 4555667789999999953
No 149
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=38.56 E-value=31 Score=25.74 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=11.7
Q ss_pred CeEEEEcccccccc
Q psy3540 16 VSTIFIDEVDSLCS 29 (202)
Q Consensus 16 P~Ii~iDeiD~l~~ 29 (202)
-..|+|||+|.+..
T Consensus 176 ~~~lViDEah~~~~ 189 (245)
T 3dkp_A 176 VEWLVVDESDKLFE 189 (245)
T ss_dssp CCEEEESSHHHHHH
T ss_pred CcEEEEeChHHhcc
Confidence 46799999999865
No 150
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=37.93 E-value=88 Score=20.81 Aligned_cols=20 Identities=5% Similarity=-0.054 Sum_probs=15.0
Q ss_pred HHHHHHHhhhCCCeEEEEcc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDE 23 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDe 23 (202)
..+++.......|.+|++|-
T Consensus 40 ~~~a~~~l~~~~~dlii~D~ 59 (153)
T 3cz5_A 40 AGEAYRLYRETTPDIVVMDL 59 (153)
T ss_dssp HHHHHHHHHTTCCSEEEECS
T ss_pred HHHHHHHHhcCCCCEEEEec
Confidence 35566777778899999974
No 151
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=37.82 E-value=23 Score=25.96 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=11.8
Q ss_pred CeEEEEcccccccc
Q psy3540 16 VSTIFIDEVDSLCS 29 (202)
Q Consensus 16 P~Ii~iDeiD~l~~ 29 (202)
-++|++||+|.+..
T Consensus 156 ~~~iViDEah~~~~ 169 (224)
T 1qde_A 156 IKMFILDEADEMLS 169 (224)
T ss_dssp CCEEEEETHHHHHH
T ss_pred CcEEEEcChhHHhh
Confidence 57899999998864
No 152
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=37.70 E-value=18 Score=29.14 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=18.5
Q ss_pred HHHHhhh--CCCeEEEEccccccccc
Q psy3540 7 TNVPSNS--YRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 7 ~F~~A~~--~~P~Ii~iDeiD~l~~~ 30 (202)
+....+. ..|.+|+||.+-.++..
T Consensus 209 l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 209 VAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp HHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHhcCCCccEEEEechHHHHHH
Confidence 3455555 78999999999999854
No 153
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=37.62 E-value=81 Score=20.96 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=42.3
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRR 83 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rr 83 (202)
..+++..+....|.+|++|-- .+. ..+ -.++..+...... -+|+++.....++.+..++.
T Consensus 55 ~~~al~~l~~~~~dlii~D~~---l~~-----~~g------~~~~~~l~~~~~~----~~ii~ls~~~~~~~~~~~~~-- 114 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVE---MPV-----KTG------LEVLEWIRSEKLE----TKVVVVTTFKRAGYFERAVK-- 114 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSS---CSS-----SCH------HHHHHHHHHTTCS----CEEEEEESCCCHHHHHHHHH--
T ss_pred HHHHHHHhhccCCCEEEEeCC---CCC-----CcH------HHHHHHHHHhCCC----CeEEEEeCCCCHHHHHHHHH--
Confidence 456677777888999998831 111 111 1233333332221 34444443333223333333
Q ss_pred ccceeeecCC-CHHHHHHHHHHHhcC
Q psy3540 84 FEKRVYIPLP-NEWARYQLLTLCLEG 108 (202)
Q Consensus 84 f~~~i~i~~P-~~~~R~~il~~~l~~ 108 (202)
.+-.-++..| +.++-...++..+.+
T Consensus 115 ~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 115 AGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp TTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred CCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 3333445556 666666777777654
No 154
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=37.62 E-value=1.2e+02 Score=22.97 Aligned_cols=18 Identities=17% Similarity=-0.020 Sum_probs=13.8
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 163 ~iAraL~~~p~lllLDEP 180 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEP 180 (257)
T ss_dssp HHHHHHHTCCSEEEEEST
T ss_pred HHHHHHHcCCCEEEEeCC
Confidence 345556678999999994
No 155
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=36.02 E-value=97 Score=26.45 Aligned_cols=62 Identities=10% Similarity=-0.051 Sum_probs=35.9
Q ss_pred EEEEecCCCCCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcc--cHHHHHHHccCCC
Q psy3540 65 MILAATNHPWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNL--DFHKISKMLEGYT 128 (202)
Q Consensus 65 ~viatTn~~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~--~~~~la~~t~g~s 128 (202)
.||.||+....... + ...+..+.++..+.++-.++|..+....+..++. ...++++++.|.-
T Consensus 267 ~ilvTTR~~~v~~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 267 RCLVTTRDVEISNA-A-SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp EEEEEESBGGGGGG-C-CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred EEEEEcCCHHHHHH-c-CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 46678876332110 0 0133568888889999889988875332211111 2466777777654
No 156
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=36.01 E-value=1.2e+02 Score=21.92 Aligned_cols=43 Identities=12% Similarity=0.352 Sum_probs=33.2
Q ss_pred ceEEEEEecCCCCCccHHHHhcccceeeecC---CCHHHHHHHHHHHhc
Q psy3540 62 KIIMILAATNHPWDIDEAFRRRFEKRVYIPL---PNEWARYQLLTLCLE 107 (202)
Q Consensus 62 ~~v~viatTn~~~~ld~al~rrf~~~i~i~~---P~~~~R~~il~~~l~ 107 (202)
+-++|||- ++-++++++.|.+..+.+.. |-+-.|.-+++..-+
T Consensus 102 ~i~FvIGG---a~Gl~~~v~~rA~~~lSlS~mTfpHqL~RliL~EQiYR 147 (167)
T 1to0_A 102 KVTFVIGG---SLGLSDTVMKRADEKLSFSKMTFPHQLMRLILVEQIYR 147 (167)
T ss_dssp EEEEEECC---SSCCCHHHHHHCSEEEESCSSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEC---CCCCCHHHHHhhCcEEEccCCCCcHHHHHHHHHHHHHH
Confidence 45788887 77899999999999998865 666677777666554
No 157
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=35.63 E-value=23 Score=21.21 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 132 IANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 132 l~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
|..+..+|...|..... ..|+.+|+..|++.++
T Consensus 36 i~~l~~~A~~~a~~~kR-----------------kTI~~~Di~~A~~~l~ 68 (68)
T 1b67_A 36 GEEIASEAVKLAKHAGR-----------------KTIKAEDIELARKMFK 68 (68)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHcCC-----------------CccCHHHHHHHHHhcC
Confidence 45566666666654432 2799999999987653
No 158
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=35.23 E-value=30 Score=25.49 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.8
Q ss_pred CeEEEEcccccccc
Q psy3540 16 VSTIFIDEVDSLCS 29 (202)
Q Consensus 16 P~Ii~iDeiD~l~~ 29 (202)
-.+|++||+|.+..
T Consensus 168 ~~~lViDEah~~~~ 181 (228)
T 3iuy_A 168 ITYLVIDEADKMLD 181 (228)
T ss_dssp CCEEEECCHHHHHH
T ss_pred ceEEEEECHHHHhc
Confidence 47899999998864
No 159
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=35.17 E-value=59 Score=25.63 Aligned_cols=15 Identities=33% Similarity=0.251 Sum_probs=11.5
Q ss_pred CCCeEEEEccccccc
Q psy3540 14 YRVSTIFIDEVDSLC 28 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~ 28 (202)
..|.|+++||..+-+
T Consensus 240 ~~~~~lllDEp~~~L 254 (322)
T 1e69_A 240 KPSPFYVLDEVDSPL 254 (322)
T ss_dssp SCCSEEEEESCCSSC
T ss_pred CCCCEEEEeCCCCCC
Confidence 457899999976644
No 160
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=34.60 E-value=97 Score=22.35 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=12.0
Q ss_pred CCeEEEEcccccccc
Q psy3540 15 RVSTIFIDEVDSLCS 29 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~ 29 (202)
.-.+|++||+|.+..
T Consensus 158 ~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 158 HIKHFILDECDKMLE 172 (220)
T ss_dssp TCCEEEEESHHHHHS
T ss_pred cCCEEEEcCHHHHhc
Confidence 347899999999864
No 161
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=34.46 E-value=32 Score=27.94 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=16.4
Q ss_pred hhCCCeEEEEccccccccc
Q psy3540 12 NSYRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 12 ~~~~P~Ii~iDeiD~l~~~ 30 (202)
+..+|.+|+||-+-++.+.
T Consensus 108 ~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp CTTCCEEEEEECSTTCBCC
T ss_pred hccCceEEEEecccccccc
Confidence 5568999999999999864
No 162
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=34.32 E-value=57 Score=26.92 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=12.1
Q ss_pred CCCeEEEEccccccc
Q psy3540 14 YRVSTIFIDEVDSLC 28 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~ 28 (202)
..|.++++||.++-+
T Consensus 354 ~~~~~lllDEp~~~L 368 (430)
T 1w1w_A 354 QPSPFFVLDEVDAAL 368 (430)
T ss_dssp SCCSEEEESSTTTTC
T ss_pred CCCCEEEeCCCcccC
Confidence 468899999997754
No 163
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=33.75 E-value=1e+02 Score=25.93 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.4
Q ss_pred hhCCCeEEEEccccccccc
Q psy3540 12 NSYRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 12 ~~~~P~Ii~iDeiD~l~~~ 30 (202)
+.+.|.+|+||-+..+...
T Consensus 351 ~~~~~~lvVID~l~~l~~~ 369 (503)
T 1q57_A 351 SGLGCDVIILDHISIVVSA 369 (503)
T ss_dssp HTTCCSEEEEECTTCCCSC
T ss_pred HhcCCCEEEEccchhcCCC
Confidence 4568999999999988643
No 164
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=33.74 E-value=1.3e+02 Score=22.79 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=14.1
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.||++||--
T Consensus 155 ~iAraL~~~p~lllLDEPt 173 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEAT 173 (247)
T ss_dssp HHHHHHTTCCSEEEECCCC
T ss_pred HHHHHHhcCCCEEEEeCCc
Confidence 3455556789999999953
No 165
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=32.32 E-value=1.2e+02 Score=23.75 Aligned_cols=28 Identities=7% Similarity=0.002 Sum_probs=22.6
Q ss_pred HHHHHHHhhhCCCeEEEEcccccccccc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMR 31 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r 31 (202)
+...++.++..+|.+++++|+-.+...+
T Consensus 91 ~~~~~r~i~~~~Pk~~~~ENV~gl~~~~ 118 (331)
T 3ubt_Y 91 FYEYIRILKQKKPIFFLAENVKGMMAQR 118 (331)
T ss_dssp HHHHHHHHHHHCCSEEEEEECCGGGGCT
T ss_pred HHHHHHHHhccCCeEEEeeeeccccccc
Confidence 3456677788899999999999987654
No 166
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=32.28 E-value=2e+02 Score=23.20 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=12.2
Q ss_pred hCCC--eEEEEccccccc
Q psy3540 13 SYRV--STIFIDEVDSLC 28 (202)
Q Consensus 13 ~~~P--~Ii~iDeiD~l~ 28 (202)
...| .||+|||.++=+
T Consensus 311 ~~~~~~~~LlLDEpt~~L 328 (415)
T 4aby_A 311 VLGADTPSVVFDEVDAGI 328 (415)
T ss_dssp HHCCSSSEEEESSTTTTC
T ss_pred HhCCCCCEEEEECCCCCC
Confidence 3467 899999987644
No 167
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=32.02 E-value=44 Score=25.67 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 156 ~lAraL~~~p~lllLDEP 173 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEP 173 (256)
T ss_dssp HHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHcCCCEEEEeCC
Confidence 445566678999999994
No 168
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=31.74 E-value=35 Score=27.54 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=14.5
Q ss_pred CCCeEEEEccccccccc
Q psy3540 14 YRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~ 30 (202)
..|.+|+||++-+++..
T Consensus 230 ~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp SCEEEEEEETSSTTHHH
T ss_pred CCCCEEEEeCchHhhhh
Confidence 68999999999988743
No 169
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=31.65 E-value=1e+02 Score=21.43 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=11.4
Q ss_pred HhhhCCCeEEEEccc
Q psy3540 10 PSNSYRVSTIFIDEV 24 (202)
Q Consensus 10 ~A~~~~P~Ii~iDei 24 (202)
.|-...|.++++||-
T Consensus 76 ral~~~p~lllLDEP 90 (148)
T 1f2t_B 76 LYLAGEISLLILDEP 90 (148)
T ss_dssp HHHHSSCSEEEEESC
T ss_pred HHHcCCCCEEEEECC
Confidence 344468999999995
No 170
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=31.36 E-value=39 Score=22.30 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=28.8
Q ss_pred cHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHh
Q psy3540 116 DFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 116 ~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 180 (202)
-+++|+...+ .-|+.++++|...+-.... ..|+.+|+..||+..
T Consensus 50 a~~~l~~~le----~fi~~I~~dA~~~a~HakR-----------------KTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 50 IYEEVRAVLK----SFLESVIRDSVTYTEHAKR-----------------KTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHHHHT
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHcCC-----------------CcCcHHHHHHHHHHc
Confidence 3455555544 3356677777766654432 279999999999975
No 171
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=30.98 E-value=1.2e+02 Score=23.20 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=13.8
Q ss_pred HHHHhhhCCCeEEEEcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD 25 (202)
.+..|-...|.|+++||--
T Consensus 165 ~lAraL~~~p~lllLDEPt 183 (260)
T 2ghi_A 165 AIARCLLKDPKIVIFDEAT 183 (260)
T ss_dssp HHHHHHHHCCSEEEEECCC
T ss_pred HHHHHHHcCCCEEEEECcc
Confidence 3445556789999999953
No 172
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=30.81 E-value=91 Score=23.44 Aligned_cols=18 Identities=6% Similarity=0.021 Sum_probs=13.5
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 137 ~lAraL~~~p~lllLDEP 154 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDP 154 (237)
T ss_dssp HHHHHHHHCCSEEEEEST
T ss_pred HHHHHHhcCCCEEEEeCc
Confidence 345555678999999995
No 173
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=30.52 E-value=41 Score=24.08 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=12.0
Q ss_pred CCeEEEEcccccccc
Q psy3540 15 RVSTIFIDEVDSLCS 29 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~ 29 (202)
.-.+|++||+|.+..
T Consensus 144 ~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 144 RVEVAVLDEADEMLS 158 (207)
T ss_dssp TCSEEEEESHHHHHH
T ss_pred hceEEEEEChhHhhc
Confidence 357899999998864
No 174
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=30.31 E-value=58 Score=23.96 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=11.9
Q ss_pred CCeEEEEcccccccc
Q psy3540 15 RVSTIFIDEVDSLCS 29 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~ 29 (202)
.-.+|++||+|.+..
T Consensus 171 ~~~~lViDEah~~~~ 185 (236)
T 2pl3_A 171 DLQMLVLDEADRILD 185 (236)
T ss_dssp TCCEEEETTHHHHHH
T ss_pred cccEEEEeChHHHhc
Confidence 346899999998864
No 175
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=30.20 E-value=37 Score=25.39 Aligned_cols=20 Identities=5% Similarity=-0.052 Sum_probs=14.5
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+..|-...|.|+++||--+
T Consensus 143 ~laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 143 QLASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp HHHHHTTSCCSEEEEESTTT
T ss_pred HHHHHHHhCCCEEEEECCCc
Confidence 34455567899999999644
No 176
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=30.01 E-value=1.5e+02 Score=21.60 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=24.9
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHh
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD 52 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld 52 (202)
+-+..+...|.+|+||++..+... +.....+.+..|...+.
T Consensus 120 i~~~~~~~~~~~vviD~~~~l~~~-----~~~~~~~~l~~l~~~~~ 160 (247)
T 2dr3_A 120 LRQAIRDINAKRVVVDSVTTLYIN-----KPAMARSIILQLKRVLA 160 (247)
T ss_dssp HHHHHHHHTCCEEEEETSGGGTTT-----CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEECCchHhhcC-----CHHHHHHHHHHHHHHHH
Confidence 333445578999999999998631 11223445555655553
No 177
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=29.93 E-value=1.5e+02 Score=21.32 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=32.5
Q ss_pred ceEEEEEecCCCCCccHHHHhcccceeeecC---CCHHHHHHHHHHHh
Q psy3540 62 KIIMILAATNHPWDIDEAFRRRFEKRVYIPL---PNEWARYQLLTLCL 106 (202)
Q Consensus 62 ~~v~viatTn~~~~ld~al~rrf~~~i~i~~---P~~~~R~~il~~~l 106 (202)
+-++|||- |+-++++++.|.+..+.+.. |-+-.|.-+++..-
T Consensus 106 ~i~FvIGG---~~Gl~~~v~~rA~~~lSlS~mTfpHqL~RliL~EQlY 150 (163)
T 4fak_A 106 DFVFVIGG---SNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVY 150 (163)
T ss_dssp EEEEEECB---TTBCCHHHHHHCSEEEESCSSCCCHHHHHHHHHHHHH
T ss_pred ceEEEEEC---CCccCHHHHHhcCceEEEecCCCCHHHHHHHHHHHHH
Confidence 56788887 68899999999999998865 56667776666554
No 178
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=29.86 E-value=32 Score=28.24 Aligned_cols=18 Identities=6% Similarity=0.060 Sum_probs=13.7
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.||++||-
T Consensus 173 aIArAL~~~P~lLLlDEP 190 (366)
T 3tui_C 173 AIARALASNPKVLLCDQA 190 (366)
T ss_dssp HHHHHTTTCCSEEEEEST
T ss_pred HHHHHHhcCCCEEEEECC
Confidence 345555678999999994
No 179
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=29.83 E-value=84 Score=24.20 Aligned_cols=18 Identities=11% Similarity=0.017 Sum_probs=14.1
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 138 ~lAraL~~~p~lllLDEP 155 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEP 155 (263)
T ss_dssp HHHHHHHTCCSEEEEECT
T ss_pred HHHHHHHhCCCEEEEECC
Confidence 455566789999999994
No 180
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=28.82 E-value=38 Score=25.20 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=11.7
Q ss_pred CeEEEEcccccccc
Q psy3540 16 VSTIFIDEVDSLCS 29 (202)
Q Consensus 16 P~Ii~iDeiD~l~~ 29 (202)
-.+|++||+|.+..
T Consensus 174 ~~~lViDEah~~~~ 187 (237)
T 3bor_A 174 IKMFVLDEADEMLS 187 (237)
T ss_dssp CCEEEEESHHHHHH
T ss_pred CcEEEECCchHhhc
Confidence 57899999998864
No 181
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=28.43 E-value=47 Score=26.22 Aligned_cols=14 Identities=14% Similarity=0.411 Sum_probs=9.8
Q ss_pred CCeEEEEccccccc
Q psy3540 15 RVSTIFIDEVDSLC 28 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~ 28 (202)
.+.+|+|||++...
T Consensus 214 ~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 214 NVPVLILDDIGAEQ 227 (308)
T ss_dssp TSSEEEEETCCC--
T ss_pred CCCEEEEcCCCCCC
Confidence 45699999997653
No 182
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=28.21 E-value=33 Score=25.49 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=12.2
Q ss_pred HhhhCCCeEEEEcccc
Q psy3540 10 PSNSYRVSTIFIDEVD 25 (202)
Q Consensus 10 ~A~~~~P~Ii~iDeiD 25 (202)
.|-...|.||++||--
T Consensus 117 raL~~~p~lllLDEPt 132 (208)
T 3b85_A 117 RGRTLNDAFVILDEAQ 132 (208)
T ss_dssp TTCCBCSEEEEECSGG
T ss_pred HHHhcCCCEEEEeCCc
Confidence 4445689999999953
No 183
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=27.89 E-value=69 Score=26.40 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.||++||-
T Consensus 165 alARAL~~~P~lLLLDEP 182 (390)
T 3gd7_A 165 CLARSVLSKAKILLLDEP 182 (390)
T ss_dssp HHHHHHHTTCCEEEEESH
T ss_pred HHHHHHhcCCCEEEEeCC
Confidence 455566679999999984
No 184
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=27.84 E-value=82 Score=19.27 Aligned_cols=14 Identities=7% Similarity=-0.111 Sum_probs=12.1
Q ss_pred CCcHHHHHHHHHHh
Q psy3540 167 PVTEKDFREAIARC 180 (202)
Q Consensus 167 ~it~~df~~Al~~~ 180 (202)
.|+.+|+..|++.+
T Consensus 57 TI~~~dI~~A~~~l 70 (76)
T 3b0c_W 57 IIKPEHTIAAAKVI 70 (76)
T ss_dssp SBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999998865
No 185
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.76 E-value=2.2e+02 Score=30.56 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=33.2
Q ss_pred ceEEEEEecC----CCCCccHHHHhcccceeeecCCCHHHHHHHHHH
Q psy3540 62 KIIMILAATN----HPWDIDEAFRRRFEKRVYIPLPNEWARYQLLTL 104 (202)
Q Consensus 62 ~~v~viatTn----~~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~ 104 (202)
....|++|.| ....|+++++.||- .+.++.||.+.-.+|+-.
T Consensus 706 ~~~~vfiTmNpgY~gr~eLP~nLk~lFr-~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 706 QDMGIFVTMNPGYAGRSNLPDNLKKLFR-SMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp TTCEEEECBCCCGGGCCCSCHHHHTTEE-EEECCSCCHHHHHHHHHH
T ss_pred CCeEEEEEeCCCccCcccChHHHHhhcE-EEEEeCCCHHHHHHHHHH
Confidence 3466788888 35689999999994 599999999888887543
No 186
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=27.42 E-value=61 Score=24.36 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=11.5
Q ss_pred CeEEEEcccccccc
Q psy3540 16 VSTIFIDEVDSLCS 29 (202)
Q Consensus 16 P~Ii~iDeiD~l~~ 29 (202)
-.+|++||+|.+..
T Consensus 187 ~~~lViDEah~l~~ 200 (249)
T 3ber_A 187 LKYLVMDEADRILN 200 (249)
T ss_dssp CCEEEECSHHHHHH
T ss_pred cCEEEEcChhhhhc
Confidence 46899999998764
No 187
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=27.25 E-value=1.6e+02 Score=24.57 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=30.3
Q ss_pred ccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCC--CCcHHHHHHHHHHhC
Q psy3540 115 LDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL--PVTEKDFREAIARCR 181 (202)
Q Consensus 115 ~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~--~it~~df~~Al~~~~ 181 (202)
++.+.++...-|+ +|+..|+..|....-... .....+....- ..|.+||.+.+++++
T Consensus 283 f~p~~~~~~llg~--gd~~~l~e~~~~~~~~~~--------~~~~~~k~~~g~~~f~~~d~~~q~~~~~ 341 (433)
T 3kl4_A 283 FNAKRFVSRILGM--GDIESILEKVKGLEEYDK--------IQKKMEDVMEGKGKLTLRDVYAQIIALR 341 (433)
T ss_dssp CCHHHHHHHHHCS--SHHHHHHHHHHHC---------------------------CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCC--chHHHHHHHHHHhhhHHH--------HHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4567787776554 689898887753221110 00011111111 488999999988865
No 188
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=27.21 E-value=80 Score=23.79 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 149 ~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp HHHHHHTTCCSEEEEECT
T ss_pred HHHHHHHcCCCEEEEcCC
Confidence 445566678999999995
No 189
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=26.92 E-value=51 Score=21.65 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=27.1
Q ss_pred cHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHh
Q psy3540 116 DFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 116 ~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 180 (202)
-+..|+...+ .-+..+++.|...+-.... ..|+.+|+..||+..
T Consensus 51 a~~~l~~vle----~~~~~V~~dA~~~a~hakR-----------------ktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 51 IYEETRGVLK----VFLENVIRDAVTYTEHAKR-----------------KTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHHHHT
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHcCC-----------------CcCCHHHHHHHHHHc
Confidence 3455555443 2345566666655544322 269999999999976
No 190
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=26.71 E-value=1.2e+02 Score=22.99 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=14.0
Q ss_pred CCCeEEEEccccccccc
Q psy3540 14 YRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~ 30 (202)
..|.+|+|||+-++.+.
T Consensus 132 ~~~~livlDe~~~~~~~ 148 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHIE 148 (279)
T ss_dssp TTCSEEEEECGGGGCCS
T ss_pred CCCCEEEECCHHHhcCC
Confidence 36999999999997653
No 191
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=26.53 E-value=1.9e+02 Score=21.25 Aligned_cols=69 Identities=4% Similarity=-0.012 Sum_probs=41.0
Q ss_pred HHHHHHhhh----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHH
Q psy3540 5 QRTNVPSNS----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAF 80 (202)
Q Consensus 5 ~~~F~~A~~----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al 80 (202)
+..+..|+. -...+|++||+=....-.- -. ...++..+..-.. ..-||.|+|.+ ++.|
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~----l~-----~~ev~~~l~~Rp~------~~~vIlTGr~a---p~~l 167 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDY----LP-----LEEVISALNARPG------HQTVIITGRGC---HRDI 167 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTS----SC-----HHHHHHHHHTSCT------TCEEEEECSSC---CHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCC----CC-----HHHHHHHHHhCcC------CCEEEEECCCC---cHHH
Confidence 344444443 4578999999954322110 00 2346666654333 35677888874 7888
Q ss_pred Hhcccceeeec
Q psy3540 81 RRRFEKRVYIP 91 (202)
Q Consensus 81 ~rrf~~~i~i~ 91 (202)
+..-|.+-++.
T Consensus 168 ~e~AD~VTem~ 178 (196)
T 1g5t_A 168 LDLADTVSELR 178 (196)
T ss_dssp HHHCSEEEECC
T ss_pred HHhCcceeeec
Confidence 87777766654
No 192
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=26.44 E-value=53 Score=21.59 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=27.8
Q ss_pred cHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 116 DFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 116 ~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
-+.+|+...+-| +..+++.|...+-.... -.|+.+|+..||+...
T Consensus 51 a~~~l~~vle~~----~~~V~~dA~~~a~hakR-----------------ktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 51 IYEEVRNVLKTF----LESVIRDAVTYTEHAKR-----------------KTVTSLDVVYALKRQG 95 (103)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHcCC-----------------CcCcHHHHHHHHHHcC
Confidence 355555554422 45556666655544322 2699999999999863
No 193
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=26.43 E-value=1.8e+02 Score=20.89 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=12.4
Q ss_pred hhCCCeEEEEcccccc
Q psy3540 12 NSYRVSTIFIDEVDSL 27 (202)
Q Consensus 12 ~~~~P~Ii~iDeiD~l 27 (202)
....|.|+++||++.+
T Consensus 102 ~~~~~dvlilDE~g~~ 117 (189)
T 2i3b_A 102 SGPGQRVCVIDEIGKM 117 (189)
T ss_dssp CSSCCCCEEECCCSTT
T ss_pred hccCCCEEEEeCCCcc
Confidence 3567999999997544
No 194
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=26.05 E-value=39 Score=27.50 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=16.0
Q ss_pred hhCCCeEEEEccccccccc
Q psy3540 12 NSYRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 12 ~~~~P~Ii~iDeiD~l~~~ 30 (202)
+...|.+|+||.+-.+.+.
T Consensus 138 ~~~~~~lVVIDsl~~l~~~ 156 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTPK 156 (356)
T ss_dssp HHTCCSEEEEECGGGCCCH
T ss_pred hccCCCEEEEcCHHHhcch
Confidence 4578999999999999853
No 195
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=25.81 E-value=1.1e+02 Score=21.57 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=28.9
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHH
Q psy3540 124 LEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 179 (202)
Q Consensus 124 t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~ 179 (202)
-.++|..|+..+++.|..+-+-+...................-.||..||..+|.+
T Consensus 17 ~~~~s~~e~~~vI~AaYRQVf~~~~~~~~~~r~~~lESql~nG~ItVReFIR~Lak 72 (147)
T 3osj_A 17 KPGLSALEKNAVIKAAYRQIFERDITKAYSQSISYLESQVRNGDISMKEFVRRLAK 72 (147)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHSSCCCGGGCHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCcchhhhhcccccHHHHHHcCCccHHHHHHHHHc
Confidence 35788888888877666555432110000000111111111225888888888876
No 196
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=25.78 E-value=1.6e+02 Score=23.09 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=14.1
Q ss_pred hhCCCe--EEEEcccccccc
Q psy3540 12 NSYRVS--TIFIDEVDSLCS 29 (202)
Q Consensus 12 ~~~~P~--Ii~iDeiD~l~~ 29 (202)
+.+.|. +|+||-+..+..
T Consensus 176 ~~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 176 RKNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp HTSSSCCEEEEEECGGGSBC
T ss_pred HhcCCCCeEEEEeCchhcCC
Confidence 344666 999999999865
No 197
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=25.57 E-value=3e+02 Score=23.07 Aligned_cols=153 Identities=16% Similarity=0.144 Sum_probs=75.0
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRR 83 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rr 83 (202)
+++.+..|+...+.+|+||.. .+.. .. ..+..++.....-... ...++|+-++...+.++.+ +.
T Consensus 171 ~~~al~~a~~~~~DvVIIDTa-----Grl~-~d----~~lm~el~~i~~~~~p----d~vlLVvDA~~gq~a~~~a--~~ 234 (443)
T 3dm5_A 171 AKEGVDYFKSKGVDIIIVDTA-----GRHK-ED----KALIEEMKQISNVIHP----HEVILVIDGTIGQQAYNQA--LA 234 (443)
T ss_dssp HHHHHHHHHHTTCSEEEEECC-----CCSS-CC----HHHHHHHHHHHHHHCC----SEEEEEEEGGGGGGHHHHH--HH
T ss_pred HHHHHHHHHhCCCCEEEEECC-----Cccc-ch----HHHHHHHHHHHHhhcC----ceEEEEEeCCCchhHHHHH--HH
Confidence 356677777777889999965 1211 11 1223333222222222 2456666666544433322 33
Q ss_pred cc----ce-eeecCCCHHHHHHHHHHHh--cCcccC-----------CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q psy3540 84 FE----KR-VYIPLPNEWARYQLLTLCL--EGVVID-----------VNLDFHKISKMLEGYTGSDIANLARDAAMMSIR 145 (202)
Q Consensus 84 f~----~~-i~i~~P~~~~R~~il~~~l--~~~~~~-----------~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~ 145 (202)
|. .. +-+..-|...+........ .+.++. ..++.+.++...-| .+|+..|+..|...--.
T Consensus 235 f~~~~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg--~gd~~~l~e~~~~~~~~ 312 (443)
T 3dm5_A 235 FKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG--LGDIQGLLEKFKELEKE 312 (443)
T ss_dssp HHHSCTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT--TTCHHHHHHHHHHHHTT
T ss_pred HHhhCCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC--CCcHHHHHHHHHHhhhh
Confidence 33 21 3445454444433222222 122221 23467888888755 57999999887543211
Q ss_pred HHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 146 RKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
+... ......+.. -..|.+||.+-++.++
T Consensus 313 ~~~~---~~~~~k~~~----~~f~l~d~~~q~~~~~ 341 (443)
T 3dm5_A 313 VEIK---EEDIERFLR----GKFTLKDMYAQLEAMR 341 (443)
T ss_dssp HHHH---HHHHHHHHT----TCCCHHHHHHHHHHHH
T ss_pred hHHH---HHHHHHHhh----CCcCHHHHHHHHHHHH
Confidence 1000 000111111 1488999998888865
No 198
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=25.57 E-value=87 Score=23.54 Aligned_cols=23 Identities=26% Similarity=0.029 Sum_probs=16.3
Q ss_pred HHHHHHhhh----CCCeEEEEcccccc
Q psy3540 5 QRTNVPSNS----YRVSTIFIDEVDSL 27 (202)
Q Consensus 5 ~~~F~~A~~----~~P~Ii~iDeiD~l 27 (202)
.++++.++. ..|.+|+|||+-.+
T Consensus 75 ~~i~~~i~~~~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 75 PEILNYIMSNSFNDETKVIGIDEVQFF 101 (223)
T ss_dssp HHHHHHHHSTTSCTTCCEEEECSGGGS
T ss_pred HHHHHHHHHHhhCCCCCEEEEecCccC
Confidence 455666654 35889999999764
No 199
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=25.31 E-value=63 Score=32.26 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=40.9
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC-----cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEec
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS-----EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAAT 70 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~-----~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatT 70 (202)
.++..+...++..+|++|++|-+.++.++..-.+ .-+..-|+.++-|.-|.+.-+. .++.+|.+.
T Consensus 1496 ~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~----~~~~~i~~~ 1565 (1706)
T 3cmw_A 1496 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ----SNTLLIFIN 1565 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHH----HTCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHh----CCcEEEEee
Confidence 3577788889999999999999999998764321 1123345555555555544443 334444443
No 200
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=24.96 E-value=20 Score=29.27 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=13.8
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 155 alArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEP 172 (355)
T ss_dssp HHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHcCCCEEEEeCC
Confidence 445556678999999994
No 201
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.88 E-value=1.4e+02 Score=19.14 Aligned_cols=20 Identities=5% Similarity=-0.009 Sum_probs=14.7
Q ss_pred HHHHHHHhhhCCCeEEEEcc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDE 23 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDe 23 (202)
..++........|.+|++|-
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~ 55 (140)
T 2qr3_A 36 PVSLSTVLREENPEVVLLDM 55 (140)
T ss_dssp HHHHHHHHHHSCEEEEEEET
T ss_pred HHHHHHHHHcCCCCEEEEeC
Confidence 34566667778899999984
No 202
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=24.78 E-value=33 Score=24.00 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=15.6
Q ss_pred HHhhhCCCeEEEEcccccccc
Q psy3540 9 VPSNSYRVSTIFIDEVDSLCS 29 (202)
Q Consensus 9 ~~A~~~~P~Ii~iDeiD~l~~ 29 (202)
+.|+.+.|.|+|+|+-..+..
T Consensus 96 ~E~~~~~P~vV~vd~~N~i~~ 116 (139)
T 2c45_A 96 ARARTYQPRIVFVDAYNKPID 116 (139)
T ss_dssp HHHHSCCCEEEECCTTCC---
T ss_pred HHhccCCCeEEEECCCCCEEE
Confidence 567889999999999777654
No 203
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=24.46 E-value=1.2e+02 Score=23.32 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.||++||-
T Consensus 169 ~lAraL~~~p~lllLDEP 186 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEP 186 (263)
T ss_dssp HHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHCCCCEEEEeCC
Confidence 455566678999999994
No 204
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=24.20 E-value=1.6e+02 Score=20.89 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=32.9
Q ss_pred ceEEEEEecCCCCCccHHHHhcccceeeecC---CCHHHHHHHHHHHhc
Q psy3540 62 KIIMILAATNHPWDIDEAFRRRFEKRVYIPL---PNEWARYQLLTLCLE 107 (202)
Q Consensus 62 ~~v~viatTn~~~~ld~al~rrf~~~i~i~~---P~~~~R~~il~~~l~ 107 (202)
+-++|||- ++-++++++.|.+..+.+.. |-+-.|.-+++..-+
T Consensus 97 ~i~FvIGG---~~Gl~~~v~~rA~~~lSlS~mT~pHql~RliL~EQiYR 142 (155)
T 1ns5_A 97 DVSLLIGG---PEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYR 142 (155)
T ss_dssp CEEEEECB---TTBCCHHHHHHCSEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEC---CCCCCHHHHHhhCceEEccCCCCcHHHHHHHHHHHHHH
Confidence 45788887 78899999999999988754 666677777666553
No 205
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=24.07 E-value=1.1e+02 Score=23.50 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 163 ~lAraL~~~p~lllLDEP 180 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEP 180 (262)
T ss_dssp HHHHHHHTCCSEEEEEST
T ss_pred HHHHHHhcCCCEEEEeCC
Confidence 455666789999999994
No 206
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=23.63 E-value=1.3e+02 Score=23.89 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=12.8
Q ss_pred HHHhhhCCCeEEEEcccc
Q psy3540 8 NVPSNSYRVSTIFIDEVD 25 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD 25 (202)
+..|-...|.++++||--
T Consensus 265 ~a~~l~~~p~~lllDEp~ 282 (339)
T 3qkt_A 265 MSLYLAGEISLLILDEPT 282 (339)
T ss_dssp HHHHTTTTTCEEEEECCC
T ss_pred HHHHhcCCCCEEEEECCC
Confidence 334445679999999953
No 207
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=23.57 E-value=2e+02 Score=23.83 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=15.7
Q ss_pred hhCCCeEEEEccccccccc
Q psy3540 12 NSYRVSTIFIDEVDSLCSM 30 (202)
Q Consensus 12 ~~~~P~Ii~iDeiD~l~~~ 30 (202)
+.+.|.+|+||++-.+...
T Consensus 310 ~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 310 QESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp TTTCCCEEEEECGGGSCCS
T ss_pred HHcCCCEEEEccHHHhccC
Confidence 3468999999999998753
No 208
>4g9q_A 4-carboxymuconolactone decarboxylase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.77A {Sinorhizobium meliloti}
Probab=23.42 E-value=1.8e+02 Score=22.66 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=47.9
Q ss_pred CccHHHHh-----cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q psy3540 75 DIDEAFRR-----RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMM 142 (202)
Q Consensus 75 ~ld~al~r-----rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~ 142 (202)
.+.|++-+ .|+.++.=|-.+..+|.-|--..+--......+...-=+..-.|.|..+|+.++-.+...
T Consensus 48 ~~aP~l~~~~~e~~fG~vw~r~~Ld~k~R~Litla~l~A~g~~~~l~~H~~~Al~~G~T~~EI~Evl~q~~~Y 120 (269)
T 4g9q_A 48 SVAPALEQYTQQRLYGDVWQRPGLNRRDRSLVTIAALIARGEAPALTYYADQALENGVKPSEISETITHLAYY 120 (269)
T ss_dssp TTCHHHHHHHHHTTTTTGGGCTTSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hhCcHHHHHHHHhhhhcccCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 45566655 678888888889999988866666443333445555555667899999999987765543
No 209
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=23.21 E-value=1.5e+02 Score=18.82 Aligned_cols=20 Identities=5% Similarity=-0.162 Sum_probs=15.4
Q ss_pred HHHHHHHhhhCCCeEEEEcc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDE 23 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDe 23 (202)
..+++..+....|.+|++|-
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~ 55 (133)
T 3nhm_A 36 GASGLQQALAHPPDVLISDV 55 (133)
T ss_dssp HHHHHHHHHHSCCSEEEECS
T ss_pred HHHHHHHHhcCCCCEEEEeC
Confidence 45667777788999999983
No 210
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=23.18 E-value=38 Score=21.35 Aligned_cols=43 Identities=26% Similarity=0.266 Sum_probs=27.2
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHh
Q psy3540 117 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 117 ~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 180 (202)
...++...+ .-++.++++|...+-.... ..|+.+|+..||+..
T Consensus 33 ~~~l~~~l~----~~~~~I~~dA~~~a~ha~R-----------------KTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 33 YEETRGVLK----VFLENVIRDAVTYTEHAKR-----------------KTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHTTTT
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHcCC-----------------CcCcHHHHHHHHHHc
Confidence 444444433 3456667777666654432 269999999999864
No 211
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=22.55 E-value=80 Score=24.60 Aligned_cols=15 Identities=20% Similarity=0.550 Sum_probs=12.1
Q ss_pred CCeEEEEcccccccc
Q psy3540 15 RVSTIFIDEVDSLCS 29 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~ 29 (202)
.-.+|+|||+|.++.
T Consensus 235 ~l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 235 KIKVFVLDEADVMIA 249 (300)
T ss_dssp GCSEEEETTHHHHHH
T ss_pred hceEEEEeCHHHHhh
Confidence 346899999999874
No 212
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=22.49 E-value=1.5e+02 Score=27.54 Aligned_cols=50 Identities=16% Similarity=0.018 Sum_probs=27.2
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCc
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~l 76 (202)
...|++|++||.=+ + -+......+...++..+..-. +..+|.+|...+..
T Consensus 739 a~~~sLlLLDEp~~-----G--lD~~~~~~i~~~il~~l~~~~-------g~~vl~aTH~~el~ 788 (934)
T 3thx_A 739 ATKDSLIIIDELGR-----G--TSTYDGFGLAWAISEYIATKI-------GAFCMFATHFHELT 788 (934)
T ss_dssp CCTTCEEEEESCSC-----S--SCHHHHHHHHHHHHHHHHHTT-------CCEEEEEESCGGGG
T ss_pred ccCCcEEEEeCCCC-----C--CCHHHHHHHHHHHHHHHHhcC-------CCEEEEEcCcHHHH
Confidence 36899999999522 1 122222334455555554311 23566788875543
No 213
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=22.28 E-value=97 Score=19.71 Aligned_cols=15 Identities=13% Similarity=0.158 Sum_probs=13.1
Q ss_pred CCcHHHHHHHHHHhC
Q psy3540 167 PVTEKDFREAIARCR 181 (202)
Q Consensus 167 ~it~~df~~Al~~~~ 181 (202)
.|+.+|+..|++.+.
T Consensus 62 TI~~~Dv~~Al~~l~ 76 (93)
T 1n1j_A 62 TINGEDILFAMSTLG 76 (93)
T ss_dssp SBCHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHcC
Confidence 799999999998654
No 214
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=22.25 E-value=48 Score=27.09 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||=
T Consensus 143 alArAL~~~P~lLLLDEP 160 (362)
T 2it1_A 143 AIARALVKEPEVLLLDEP 160 (362)
T ss_dssp HHHHHHTTCCSEEEEESG
T ss_pred HHHHHHHcCCCEEEEECc
Confidence 455566678999999994
No 215
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=22.10 E-value=53 Score=26.65 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=13.7
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 137 alAraL~~~P~lLLLDEP 154 (348)
T 3d31_A 137 ALARALVTNPKILLLDEP 154 (348)
T ss_dssp HHHHHTTSCCSEEEEESS
T ss_pred HHHHHHHcCCCEEEEECc
Confidence 445555678999999994
No 216
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=22.07 E-value=1.5e+02 Score=21.33 Aligned_cols=43 Identities=9% Similarity=0.257 Sum_probs=33.1
Q ss_pred ceEEEEEecCCCCCccHHHHhcccceeeecC---CCHHHHHHHHHHHhc
Q psy3540 62 KIIMILAATNHPWDIDEAFRRRFEKRVYIPL---PNEWARYQLLTLCLE 107 (202)
Q Consensus 62 ~~v~viatTn~~~~ld~al~rrf~~~i~i~~---P~~~~R~~il~~~l~ 107 (202)
+-++|||- |+-++++++.|.+..+.+.. |-+-.|.-+++...+
T Consensus 96 ~i~FvIGG---a~Gl~~~v~~rAd~~lSlS~mTfpHqL~RliL~EQiYR 141 (163)
T 1o6d_A 96 DITILIGG---PYGLNEEIFAKAHRVFSLSKMTFTHGMTVLIVLEQIFR 141 (163)
T ss_dssp CEEEEECC---TTCCCGGGGGGCSEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEC---CCCCCHHHHHhhCceEEccCCCCcHHHHHHHHHHHHHH
Confidence 45788887 77899999999999998865 666677777666554
No 217
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=22.03 E-value=1.6e+02 Score=18.83 Aligned_cols=20 Identities=5% Similarity=0.026 Sum_probs=14.7
Q ss_pred HHHHHHHhhhCCCeEEEEcc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDE 23 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDe 23 (202)
..++....+...|.+|++|-
T Consensus 43 ~~~a~~~l~~~~~dlii~d~ 62 (143)
T 3cnb_A 43 PFDAGDLLHTVKPDVVMLDL 62 (143)
T ss_dssp HHHHHHHHHHTCCSEEEEET
T ss_pred HHHHHHHHHhcCCCEEEEec
Confidence 34566666778899999984
No 218
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=21.97 E-value=1.6e+02 Score=18.66 Aligned_cols=20 Identities=5% Similarity=0.115 Sum_probs=15.2
Q ss_pred HHHHHHHhhhCCCeEEEEcc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDE 23 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDe 23 (202)
..+++..+....|.+|++|-
T Consensus 39 ~~~a~~~l~~~~~dlii~d~ 58 (132)
T 3lte_A 39 GFDAGIKLSTFEPAIMTLDL 58 (132)
T ss_dssp HHHHHHHHHHTCCSEEEEES
T ss_pred HHHHHHHHHhcCCCEEEEec
Confidence 35566777788999999874
No 219
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=21.70 E-value=50 Score=25.07 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=11.7
Q ss_pred CeEEEEcccccccc
Q psy3540 16 VSTIFIDEVDSLCS 29 (202)
Q Consensus 16 P~Ii~iDeiD~l~~ 29 (202)
-.+|+|||+|.+..
T Consensus 202 l~~lViDEah~l~~ 215 (262)
T 3ly5_A 202 LQCLVIDEADRILD 215 (262)
T ss_dssp CCEEEECSHHHHHH
T ss_pred CCEEEEcChHHHhh
Confidence 46899999998865
No 220
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.69 E-value=59 Score=17.47 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=12.9
Q ss_pred HHHccCCCHHHHHHHHH
Q psy3540 121 SKMLEGYTGSDIANLAR 137 (202)
Q Consensus 121 a~~t~g~s~~dl~~l~~ 137 (202)
|-+.+|||+.++..+-.
T Consensus 11 alkkegfspeelaales 27 (48)
T 1g6u_A 11 ALKKEGFSPEELAALES 27 (48)
T ss_dssp HHHHTTCSHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 45668999999987643
No 221
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.64 E-value=1.3e+02 Score=18.45 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=23.0
Q ss_pred HHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHH
Q psy3540 100 QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIAN 134 (202)
Q Consensus 100 ~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~ 134 (202)
++|+.|........+-|+..|+.+|. ++.-+++.
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~ksk-ms~qqvkd 52 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASR-LSTQQVLD 52 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTT-CCHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhC-CCHHHHHH
Confidence 34555554444455778999999984 78777765
No 222
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=21.54 E-value=61 Score=26.44 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=13.9
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.||++||=
T Consensus 148 alArAL~~~P~lLLLDEP 165 (359)
T 3fvq_A 148 ALARALAPDPELILLDEP 165 (359)
T ss_dssp HHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHcCCCEEEEeCC
Confidence 445566678999999994
No 223
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=21.44 E-value=1.6e+02 Score=18.56 Aligned_cols=19 Identities=11% Similarity=0.016 Sum_probs=14.3
Q ss_pred HHHHHHHhhhCCCeEEEEc
Q psy3540 4 VQRTNVPSNSYRVSTIFID 22 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iD 22 (202)
..++++..+...|.++++|
T Consensus 35 ~~~al~~l~~~~~dlvllD 53 (122)
T 3gl9_A 35 GQIALEKLSEFTPDLIVLX 53 (122)
T ss_dssp HHHHHHHHTTBCCSEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEe
Confidence 3456666777889999987
No 224
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=21.38 E-value=51 Score=26.99 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=14.2
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||=
T Consensus 149 alArAL~~~P~lLLLDEP 166 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEP 166 (372)
T ss_dssp HHHHHHHTCCSEEEEECT
T ss_pred HHHHHHhcCCCEEEECCC
Confidence 455666789999999994
No 225
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=21.38 E-value=2e+02 Score=26.72 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=28.7
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
...|++|++||.-+ +-+......+...++..+..- .+..+|.+|...+...
T Consensus 750 a~~p~LlLLDEP~~-------GlD~~~~~~i~~~il~~L~~~-------~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 750 ATSQSLVILDELGR-------GTSTHDGIAIAYATLEYFIRD-------VKSLTLFVTHYPPVCE 800 (918)
T ss_dssp CCTTCEEEEESTTT-------TSCHHHHHHHHHHHHHHHHHT-------TCCEEEEECSCGGGGG
T ss_pred ccCCCEEEEeCCCC-------CCCHHHHHHHHHHHHHHHHHh-------cCCeEEEEeCcHHHHH
Confidence 46899999999622 112222233444566555321 1236777888876554
No 226
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=21.17 E-value=54 Score=26.75 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 143 alArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 143 ALARALVKQPKVLLFDEP 160 (359)
T ss_dssp HHHHHHTTCCSEEEEEST
T ss_pred HHHHHHHcCCCEEEEECC
Confidence 455566678999999994
No 227
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=21.12 E-value=20 Score=25.40 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=31.3
Q ss_pred HHHhhhCCCeEEEEcccccccccc----CC-CCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCC
Q psy3540 8 NVPSNSYRVSTIFIDEVDSLCSMR----GS-DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWD 75 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~l~~~r----~~-~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ 75 (202)
+..|-...|.++++||=-+-+..+ .. .-......+....+...+..+.. .+..+|.+|..++.
T Consensus 94 iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~-----~g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 94 MAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR-----EGFRYVYILNSPEE 161 (171)
T ss_dssp HHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH-----HTCSEEEEECSHHH
T ss_pred HHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh-----cCCcEEEEeCCHHH
Confidence 334445679999999965444322 10 11112222344555555555433 12345566665443
No 228
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=21.11 E-value=64 Score=21.08 Aligned_cols=39 Identities=10% Similarity=0.015 Sum_probs=23.1
Q ss_pred ceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHc
Q psy3540 86 KRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKML 124 (202)
Q Consensus 86 ~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t 124 (202)
..+..|.|+.++-++-|..+..+-+..+...++-+|+..
T Consensus 34 W~l~AP~PT~~eL~~wwee~q~np~yepP~q~~~laqel 72 (110)
T 2hg7_A 34 WNLRAPLPTQAELETWWEELQKNPPYEPPDQVELLAQEL 72 (110)
T ss_dssp ECSSSCCCCHHHHHHHHHHHHHSCCCC------------
T ss_pred hccCCCCCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 345679999999999999999887777666666666553
No 229
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=21.07 E-value=51 Score=27.02 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.|+++||-
T Consensus 151 alArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 151 AVARAIVVEPDVLLMDEP 168 (372)
T ss_dssp HHHHHHTTCCSEEEEEST
T ss_pred HHHHHHhcCCCEEEEcCC
Confidence 455566678999999994
No 230
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=20.75 E-value=1.2e+02 Score=23.81 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=21.4
Q ss_pred hHHHHHHHHhhh--CCCeEEEEcccccccccc
Q psy3540 2 REVQRTNVPSNS--YRVSTIFIDEVDSLCSMR 31 (202)
Q Consensus 2 k~i~~~F~~A~~--~~P~Ii~iDeiD~l~~~r 31 (202)
+.+.+.|..+-. ..+++|+||..|.|+..-
T Consensus 134 ~~v~~~f~~~i~~~~~~~vlIldqpdlLLa~t 165 (280)
T 4a8j_C 134 SDVLAKFSAAIQNNPTDTIVIIEQPELLLSLV 165 (280)
T ss_dssp HHHHHHHHHHHHTSTTSEEEEEECGGGHHHHS
T ss_pred HHHHHHHhhhhhccCCCeEEEEcChHHHHHhc
Confidence 345666765422 367899999999998754
No 231
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=20.74 E-value=1.8e+02 Score=18.74 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=12.4
Q ss_pred HHHHHHhhh------CCCeEEEEcc
Q psy3540 5 QRTNVPSNS------YRVSTIFIDE 23 (202)
Q Consensus 5 ~~~F~~A~~------~~P~Ii~iDe 23 (202)
.+++...+. ..|.+|++|-
T Consensus 43 ~~a~~~l~~~~~~~~~~~dlii~D~ 67 (143)
T 2qvg_A 43 NQALDMLYGRNKENKIHPKLILLDI 67 (143)
T ss_dssp HHHHHHHHTCTTCCCCCCSEEEEET
T ss_pred HHHHHHHHhcccccCCCCCEEEEec
Confidence 344555554 6789999884
No 232
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=20.65 E-value=48 Score=27.34 Aligned_cols=18 Identities=17% Similarity=0.039 Sum_probs=13.3
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.||++||=
T Consensus 143 aiArAL~~~P~lLLLDEP 160 (381)
T 3rlf_A 143 AIGRTLVAEPSVFLLDEP 160 (381)
T ss_dssp HHHHHHHHCCSEEEEEST
T ss_pred HHHHHHHcCCCEEEEECC
Confidence 344555678999999994
No 233
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=20.30 E-value=72 Score=23.78 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=11.5
Q ss_pred CeEEEEcccccccc
Q psy3540 16 VSTIFIDEVDSLCS 29 (202)
Q Consensus 16 P~Ii~iDeiD~l~~ 29 (202)
-.+|++||+|.+..
T Consensus 175 ~~~lViDEah~~~~ 188 (253)
T 1wrb_A 175 CKYIVLDEADRMLD 188 (253)
T ss_dssp CCEEEEETHHHHHH
T ss_pred CCEEEEeCHHHHHh
Confidence 36899999999864
No 234
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.25 E-value=2e+02 Score=19.21 Aligned_cols=34 Identities=9% Similarity=0.130 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhC
Q psy3540 167 PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFG 200 (202)
Q Consensus 167 ~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~ 200 (202)
++|.+++.+.+++-.|.++...+=+..++..+-|
T Consensus 26 ~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 26 FRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 7999999999999999999887766666655544
No 235
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=20.19 E-value=1.9e+02 Score=18.76 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHH-hCCCCCHHHHHHH
Q psy3540 167 PVTEKDFREAIAR-CRKSVTAHDLSKY 192 (202)
Q Consensus 167 ~it~~df~~Al~~-~~Ps~s~~~~~~~ 192 (202)
.|+.++|..++.. ..+..+.+++..+
T Consensus 104 ~i~~~el~~~l~~~~~~~~~~~~~~~~ 130 (153)
T 3ox6_A 104 EISTSELREAMRALLGHQVGHRDIEEI 130 (153)
T ss_dssp SBCHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6999999999998 7777787776653
Done!