Query psy3540
Match_columns 202
No_of_seqs 231 out of 1606
Neff 8.8
Searched_HMMs 13730
Date Fri Aug 16 19:18:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3540.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3540hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lv7a_ c.37.1.20 (A:) AAA dom 100.0 1.2E-35 8.4E-40 237.0 17.4 159 2-181 91-253 (256)
2 d1e32a2 c.37.1.20 (A:201-458) 100.0 1.1E-35 8.3E-40 237.6 12.6 173 2-179 84-258 (258)
3 d1ixza_ c.37.1.20 (A:) AAA dom 100.0 4.4E-35 3.2E-39 232.7 14.9 155 2-177 88-246 (247)
4 d1r7ra3 c.37.1.20 (A:471-735) 100.0 3.1E-32 2.3E-36 218.3 10.3 143 2-148 87-233 (265)
5 d1w44a_ c.37.1.11 (A:) NTPase 99.7 1.5E-20 1.1E-24 152.7 -4.5 102 2-110 171-278 (321)
6 d1d2na_ c.37.1.20 (A:) Hexamer 99.7 7.2E-19 5.2E-23 138.5 4.5 120 2-129 87-207 (246)
7 d1ofha_ c.37.1.20 (A:) HslU {H 99.3 2.3E-12 1.6E-16 103.9 9.0 105 2-106 97-214 (309)
8 d1in4a2 c.37.1.20 (A:17-254) H 99.1 1.9E-09 1.4E-13 82.7 14.2 137 14-180 85-234 (238)
9 d1w5sa2 c.37.1.20 (A:7-293) CD 98.8 1.9E-08 1.4E-12 78.0 11.6 143 13-179 130-286 (287)
10 d1njfa_ c.37.1.20 (A:) delta p 98.8 6E-08 4.4E-12 74.5 12.4 114 4-137 100-218 (239)
11 d1ixsb2 c.37.1.20 (B:4-242) Ho 98.7 7.8E-08 5.7E-12 73.5 10.6 136 15-180 87-235 (239)
12 d1sxje2 c.37.1.20 (E:4-255) Re 98.6 2.6E-07 1.9E-11 70.7 11.4 98 16-136 132-231 (252)
13 d1sxjd2 c.37.1.20 (D:26-262) R 98.6 4.7E-07 3.4E-11 68.6 12.5 105 16-140 109-214 (237)
14 d1iqpa2 c.37.1.20 (A:2-232) Re 98.6 3.1E-07 2.3E-11 69.7 11.1 104 13-136 107-211 (231)
15 d1sxjc2 c.37.1.20 (C:12-238) R 98.4 1.8E-07 1.3E-11 70.8 6.7 93 15-126 99-192 (227)
16 d1fnna2 c.37.1.20 (A:1-276) CD 98.4 1E-06 7.4E-11 67.5 10.4 137 13-180 122-273 (276)
17 d1sxja2 c.37.1.20 (A:295-547) 98.4 2.2E-06 1.6E-10 65.5 11.6 101 15-137 123-225 (253)
18 d1svma_ c.37.1.20 (A:) Papillo 98.4 3.1E-07 2.3E-11 74.8 6.9 140 4-148 190-339 (362)
19 d1r6bx2 c.37.1.20 (X:169-436) 98.3 3.5E-06 2.6E-10 65.6 11.9 153 3-181 98-266 (268)
20 d1a5ta2 c.37.1.20 (A:1-207) de 98.2 4.2E-06 3.1E-10 62.6 8.7 101 3-126 92-196 (207)
21 d1sxjb2 c.37.1.20 (B:7-230) Re 98.1 1.5E-05 1.1E-09 59.7 10.6 93 15-126 101-194 (224)
22 d1l8qa2 c.37.1.20 (A:77-289) C 98.1 1.3E-05 9.7E-10 60.1 10.0 108 15-139 97-210 (213)
23 d1qvra2 c.37.1.20 (A:149-535) 97.8 1.8E-05 1.3E-09 64.6 6.8 127 3-143 102-244 (387)
24 d1jbka_ c.37.1.20 (A:) ClpB, A 97.8 1.1E-05 7.9E-10 59.7 4.4 87 3-102 102-194 (195)
25 d1g8pa_ c.37.1.20 (A:) ATPase 97.6 0.00073 5.3E-08 53.3 13.9 135 17-180 129-305 (333)
26 d1qvra3 c.37.1.20 (A:536-850) 97.5 0.00055 4E-08 54.0 11.4 127 10-148 120-289 (315)
27 d2gnoa2 c.37.1.20 (A:11-208) g 97.2 0.00068 5E-08 49.8 8.3 74 3-95 63-140 (198)
28 d1r6bx3 c.37.1.20 (X:437-751) 96.8 0.0043 3.1E-07 48.6 9.7 127 9-147 115-283 (315)
29 d1um8a_ c.37.1.20 (A:) ClpX {H 95.6 0.039 2.8E-06 43.9 9.9 132 13-144 131-336 (364)
30 d1g41a_ c.37.1.20 (A:) HslU {H 94.0 0.76 5.5E-05 37.0 13.7 165 15-193 249-442 (443)
31 d2fnaa2 c.37.1.20 (A:1-283) Ar 92.2 0.75 5.5E-05 33.3 10.4 109 14-139 135-252 (283)
32 d1ny5a2 c.37.1.20 (A:138-384) 90.3 0.52 3.8E-05 34.8 7.7 114 16-142 95-232 (247)
33 d1ye8a1 c.37.1.11 (A:1-178) Hy 89.2 0.93 6.8E-05 30.7 8.0 24 4-27 88-111 (178)
34 g1f2t.1 c.37.1.12 (A:,B:) Rad5 83.8 0.69 5E-05 33.9 4.9 64 7-91 217-280 (292)
35 g1ii8.1 c.37.1.12 (A:,B:) Rad5 82.7 0.68 4.9E-05 34.5 4.6 61 12-93 299-359 (369)
36 d1mb3a_ c.23.1.1 (A:) Cell div 75.0 7.6 0.00055 24.5 7.5 86 5-108 35-121 (123)
37 d1w1wa_ c.37.1.12 (A:) Smc hea 73.4 1.4 0.0001 34.1 3.9 22 8-29 347-368 (427)
38 d1e69a_ c.37.1.12 (A:) Smc hea 70.5 3.5 0.00026 30.3 5.5 51 11-78 237-287 (308)
39 d1wb9a2 c.37.1.12 (A:567-800) 68.8 5.2 0.00038 28.9 6.0 60 2-77 109-168 (234)
40 d1jj7a_ c.37.1.12 (A:) Peptide 66.5 8.3 0.0006 28.1 6.8 64 7-90 161-224 (251)
41 d1l2ta_ c.37.1.12 (A:) MJ0796 65.2 5.3 0.00038 28.9 5.3 18 7-24 155-172 (230)
42 d1htaa_ a.22.1.2 (A:) Archaeal 62.9 3.6 0.00026 23.5 3.3 43 117-180 26-68 (68)
43 d1cr2a_ c.37.1.11 (A:) Gene 4 61.5 6.7 0.00049 28.3 5.5 25 7-31 139-163 (277)
44 d1ewqa2 c.37.1.12 (A:542-765) 59.9 8.6 0.00063 27.4 5.7 55 2-73 103-157 (224)
45 d1fada_ a.77.1.2 (A:) FADD (Mo 56.7 17 0.0012 21.7 6.4 74 92-183 3-83 (95)
46 d3d31a2 c.37.1.12 (A:1-229) Su 55.3 1.7 0.00013 31.6 1.0 17 7-23 137-153 (229)
47 d1g2912 c.37.1.12 (1:1-240) Ma 51.4 4 0.00029 29.7 2.5 18 7-24 149-166 (240)
48 d1s2ma1 c.37.1.19 (A:46-251) P 49.5 8.6 0.00063 26.6 4.1 46 17-78 145-190 (206)
49 d1g6ha_ c.37.1.12 (A:) MJ1267 49.0 8.2 0.0006 28.1 4.0 17 7-23 160-176 (254)
50 d1v43a3 c.37.1.12 (A:7-245) Hy 48.6 2.9 0.00021 30.6 1.3 18 7-24 146-163 (239)
51 d1peya_ c.23.1.1 (A:) Sporulat 48.3 25 0.0018 21.7 6.0 82 5-106 35-117 (119)
52 d2pmka1 c.37.1.12 (A:467-707) 46.5 29 0.0021 24.7 6.8 20 7-26 149-168 (241)
53 d1jbea_ c.23.1.1 (A:) CheY pro 46.0 30 0.0022 21.6 7.1 86 5-108 39-125 (128)
54 d1veca_ c.37.1.19 (A:) DEAD bo 43.5 9.5 0.00069 26.5 3.5 14 16-29 147-160 (206)
55 d2awna2 c.37.1.12 (A:4-235) Ma 42.8 3.3 0.00024 30.1 0.8 17 8-24 141-157 (232)
56 d1tafb_ a.22.1.3 (B:) TAF(II)6 42.7 9.1 0.00067 22.1 2.6 32 130-178 38-69 (70)
57 d1sgwa_ c.37.1.12 (A:) Putativ 42.0 38 0.0027 23.2 6.6 17 8-24 136-152 (200)
58 d1a1va1 c.37.1.14 (A:190-325) 41.5 10 0.00076 23.9 3.2 13 15-27 94-106 (136)
59 d3b60a1 c.37.1.12 (A:329-581) 40.8 32 0.0023 24.7 6.2 19 8-26 163-181 (253)
60 d1oxxk2 c.37.1.12 (K:1-242) Gl 40.7 2.3 0.00017 31.2 -0.4 18 7-24 150-167 (242)
61 d2j0sa1 c.37.1.19 (A:22-243) P 40.4 13 0.00095 26.2 3.9 13 17-29 161-173 (222)
62 d2hyda1 c.37.1.12 (A:324-578) 40.3 12 0.00089 27.2 3.7 20 7-26 164-183 (255)
63 d2onka1 c.37.1.12 (A:1-240) Mo 39.6 2 0.00015 31.5 -0.9 18 7-24 136-153 (240)
64 d2bykb1 a.22.1.3 (B:11-99) Chr 39.2 34 0.0025 20.2 5.7 15 167-181 53-67 (89)
65 d1hv8a1 c.37.1.19 (A:3-210) Pu 38.4 12 0.00087 25.9 3.3 13 17-29 147-159 (208)
66 d2a5yb3 c.37.1.20 (B:109-385) 38.3 38 0.0028 24.3 6.4 62 65-128 159-222 (277)
67 d1wlza1 a.39.1.7 (A:229-311) D 36.6 20 0.0015 20.5 3.8 26 167-192 36-61 (83)
68 d3dhwc1 c.37.1.12 (C:1-240) Me 36.1 10 0.00074 27.4 2.6 18 7-24 150-167 (240)
69 d2g9na1 c.37.1.19 (A:21-238) I 35.7 11 0.0008 26.5 2.7 15 16-30 156-170 (218)
70 d1gkub1 c.37.1.16 (B:1-250) He 35.6 10 0.00076 26.6 2.6 15 15-29 162-176 (237)
71 d1vh0a_ c.116.1.3 (A:) Hypothe 35.5 43 0.0031 21.9 5.8 43 62-107 102-147 (157)
72 d1to0a_ c.116.1.3 (A:) Hypothe 35.1 54 0.004 21.4 6.4 43 62-107 102-147 (157)
73 d1a04a2 c.23.1.1 (A:5-142) Nit 33.1 53 0.0038 20.6 7.2 84 4-107 37-121 (138)
74 d1o6da_ c.116.1.3 (A:) Hypothe 32.9 34 0.0025 22.2 4.8 43 62-107 94-139 (147)
75 d1sxjc1 a.80.1.1 (C:239-333) R 32.2 34 0.0025 20.2 4.4 44 93-139 1-46 (95)
76 d1xp8a1 c.37.1.11 (A:15-282) R 32.0 36 0.0026 24.6 5.2 57 13-73 133-194 (268)
77 d1f1ea_ a.22.1.2 (A:) Archaeal 31.9 16 0.0011 24.3 2.9 46 117-183 102-147 (151)
78 d1ku5a_ a.22.1.2 (A:) Archaeal 31.8 11 0.00078 21.2 1.7 12 167-178 54-65 (66)
79 d1dpua_ a.4.5.16 (A:) C-termin 31.1 43 0.0031 18.9 4.9 27 112-138 21-47 (69)
80 d1ji0a_ c.37.1.12 (A:) Branche 30.4 22 0.0016 25.4 3.7 17 7-23 149-165 (240)
81 d1vpla_ c.37.1.12 (A:) Putativ 30.1 30 0.0022 24.6 4.4 18 7-24 143-160 (238)
82 d1krwa_ c.23.1.1 (A:) NTRC rec 29.7 57 0.0042 20.0 6.2 18 5-22 37-54 (123)
83 d1q0ua_ c.37.1.19 (A:) Probabl 29.6 34 0.0025 23.1 4.6 13 17-29 149-161 (209)
84 d1le8a_ a.4.1.1 (A:) Mating ty 29.5 38 0.0028 17.8 4.2 40 98-138 8-47 (53)
85 d1gvnb_ c.37.1.21 (B:) Plasmid 28.8 20 0.0015 25.0 3.3 122 63-184 111-249 (273)
86 d1ns5a_ c.116.1.3 (A:) Hypothe 28.4 64 0.0047 20.9 5.7 43 62-107 97-142 (153)
87 d1fw4a_ a.39.1.5 (A:) Calmodul 27.6 40 0.0029 18.1 3.9 26 167-192 19-44 (65)
88 d1tf7a2 c.37.1.11 (A:256-497) 27.2 82 0.006 21.2 6.5 45 4-52 105-149 (242)
89 d1qdea_ c.37.1.19 (A:) Initiat 27.0 21 0.0015 24.7 3.0 15 15-29 151-165 (212)
90 d1l7vc_ c.37.1.12 (C:) ABC tra 26.8 11 0.00079 26.9 1.3 10 15-24 150-159 (231)
91 d1n1ja_ a.22.1.3 (A:) Nuclear 26.7 34 0.0025 20.1 3.6 16 167-182 56-71 (87)
92 d1b0ua_ c.37.1.12 (A:) ATP-bin 26.2 28 0.002 25.1 3.7 17 7-23 159-175 (258)
93 d1jfib_ a.22.1.3 (B:) Negative 26.2 51 0.0037 21.1 4.7 15 167-181 57-71 (135)
94 d1mvoa_ c.23.1.1 (A:) PhoP rec 26.1 66 0.0048 19.5 8.4 84 4-107 35-119 (121)
95 d2pl1a1 c.23.1.1 (A:1-119) Pho 26.0 67 0.0049 19.5 6.5 20 4-23 33-52 (119)
96 d2c7pa1 c.66.1.26 (A:1-327) DN 25.0 71 0.0052 22.9 6.0 28 4-31 101-128 (327)
97 d1unda_ a.14.1.1 (A:) Advillin 24.8 23 0.0017 17.5 2.0 26 168-198 2-27 (36)
98 d1lh0a_ c.61.1.1 (A:) Orotate 24.7 26 0.0019 24.5 3.2 33 167-201 181-213 (213)
99 d2huec1 a.22.1.1 (C:20-101) Hi 24.7 16 0.0012 21.5 1.7 43 117-180 32-74 (82)
100 d1mv5a_ c.37.1.12 (A:) Multidr 24.4 14 0.001 26.6 1.6 22 7-28 149-170 (242)
101 d1e9ra_ c.37.1.11 (A:) Bacteri 24.3 1.3E+02 0.0095 22.3 7.9 75 14-108 275-359 (433)
102 d1f54a_ a.39.1.5 (A:) Calmodul 24.2 57 0.0041 18.1 6.1 27 167-193 26-52 (77)
103 d2amya1 c.108.1.10 (A:4-246) P 24.1 27 0.002 23.5 3.1 47 15-76 2-49 (243)
104 d1tf7a1 c.37.1.11 (A:14-255) C 24.0 86 0.0062 20.7 6.0 45 5-52 115-159 (242)
105 d2pq3a1 a.39.1.5 (A:3-75) Calm 24.0 23 0.0017 19.7 2.3 31 167-197 24-54 (73)
106 d2gf5a1 a.77.1.2 (A:89-191) FA 23.5 71 0.0051 18.9 9.1 86 92-191 3-91 (103)
107 d1t6na_ c.37.1.19 (A:) Spliceo 23.4 91 0.0066 20.9 6.0 13 17-29 147-159 (207)
108 d1p6qa_ c.23.1.1 (A:) CheY pro 23.3 79 0.0058 19.4 8.2 85 4-108 40-127 (129)
109 d2csua1 c.2.1.8 (A:1-129) Acet 23.2 34 0.0025 21.7 3.3 40 51-94 2-45 (129)
110 d1tiza_ a.39.1.5 (A:) Calmodul 23.1 40 0.0029 18.2 3.2 30 167-196 17-46 (67)
111 d1wrba1 c.37.1.19 (A:164-401) 22.7 29 0.0021 24.4 3.1 14 16-29 173-186 (238)
112 d1n1jb_ a.22.1.3 (B:) Nuclear 22.1 25 0.0018 20.2 2.2 43 117-180 24-66 (78)
113 d2fcea1 a.39.1.5 (A:84-144) Ca 22.0 46 0.0033 17.6 3.3 26 167-192 17-42 (61)
114 d1u0sy_ c.23.1.1 (Y:) CheY pro 21.9 81 0.0059 19.0 6.3 19 4-22 35-53 (118)
115 d2eiaa2 a.73.1.1 (A:17-147) EI 21.0 68 0.005 20.6 4.4 47 102-148 7-58 (131)
116 d1wrka1 a.39.1.5 (A:4-85) Trop 20.8 72 0.0053 18.1 4.3 27 167-193 32-58 (82)
117 d1avsa_ a.39.1.5 (A:) Troponin 20.6 61 0.0044 18.2 3.9 30 167-196 30-59 (81)
118 d2p6ra3 c.37.1.19 (A:1-202) He 20.4 56 0.0041 21.7 4.2 14 16-29 139-152 (202)
119 d2o3fa1 a.4.1.20 (A:1-83) Puta 20.2 44 0.0032 19.4 3.1 39 100-139 22-60 (83)
No 1
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.2e-35 Score=237.05 Aligned_cols=159 Identities=29% Similarity=0.479 Sum_probs=143.9
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC--cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++|+++|+.|+.++||||||||+|.++++|+... .+....+++++|+++||++... .+|+||||||+|+.||++
T Consensus 91 ~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~----~~v~vIatTn~~~~ld~a 166 (256)
T d1lv7a_ 91 SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN----EGIIVIAATNRPDVLDPA 166 (256)
T ss_dssp HHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS----SCEEEEEEESCTTTSCGG
T ss_pred HHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC----CCEEEEEeCCCcccCCHh
Confidence 5799999999999999999999999999886433 2345678999999999999875 789999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| |||++|+|++|+.++|.+||+.++.+.++..++++..||+.|+||||+||+++|++|.+.|+++..
T Consensus 167 l~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~~~--------- 237 (256)
T d1lv7a_ 167 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK--------- 237 (256)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC---------
Confidence 998 999999999999999999999999999988899999999999999999999999999998886532
Q ss_pred hhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
..|+.+||++|++++.
T Consensus 238 --------~~i~~~d~~~Al~rv~ 253 (256)
T d1lv7a_ 238 --------RVVSMVEFEKAKDKIM 253 (256)
T ss_dssp --------SSBCHHHHHHHHHHHT
T ss_pred --------CccCHHHHHHHHHHHh
Confidence 2699999999999863
No 2
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00 E-value=1.1e-35 Score=237.61 Aligned_cols=173 Identities=29% Similarity=0.469 Sum_probs=145.4
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~ 81 (202)
++++.+|..|+.++||||||||+|.++++|++ +.++...++++.++..+++.... .+|+||||||+|+.+|++++
T Consensus 84 ~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~----~~vlvi~tTn~~~~ld~al~ 158 (258)
T d1e32a2 84 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THGEVERRIVSQLLTLMDGLKQR----AHVIVMAATNRPNSIDPALR 158 (258)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSGGGTCCHHHH-CCCTTHHHHHHHHHHHHHTCCCS----SCEEEEEEESCGGGSCGGGT
T ss_pred HHHHHHHHHHHhcCCeEEEehhhhhhccCCCC-CCCchHHHHHHHhcccccccccc----CCccEEEeCCCccccchhhh
Confidence 57899999999999999999999999998854 34455678999999999998776 78999999999999999999
Q ss_pred h--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhh
Q psy3540 82 R--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEI 159 (202)
Q Consensus 82 r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~ 159 (202)
| |||++|+|++|+.++|..||+.++++.++..++++..||+.|+||||+||+++|++|.+.|+++.............
T Consensus 159 r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~lv~~A~~~a~~~~~~~~~~~~~~~~ 238 (258)
T d1e32a2 159 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 238 (258)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCSSCCB
T ss_pred hcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccccchhhhhhh
Confidence 9 99999999999999999999999999988889999999999999999999999999999999876432110000000
Q ss_pred hhccCCCCCcHHHHHHHHHH
Q psy3540 160 KQEDIDLPVTEKDFREAIAR 179 (202)
Q Consensus 160 ~~~~~~~~it~~df~~Al~~ 179 (202)
.+.....+||++||+.||++
T Consensus 239 ~~~~~~~~it~~Df~~AL~~ 258 (258)
T d1e32a2 239 AEVMNSLAVTMDDFRWALSQ 258 (258)
T ss_dssp HHHHHHCCBCHHHHHHHHTC
T ss_pred hhhhccCccCHHHHHHHhCc
Confidence 00111247999999999863
No 3
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=4.4e-35 Score=232.67 Aligned_cols=155 Identities=30% Similarity=0.484 Sum_probs=136.7
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCC--cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++|+++|+.|+.++||||||||+|.|+++|+... .+....+++++|+++||++... .+|+||||||+|+.||++
T Consensus 88 ~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~----~~vivi~tTn~~~~ld~a 163 (247)
T d1ixza_ 88 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD----TAIVVMAATNRPDILDPA 163 (247)
T ss_dssp HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT----CCEEEEEEESCGGGSCGG
T ss_pred HHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC----CCEEEEEeCCCccccCHh
Confidence 5789999999999999999999999999886432 3345678999999999999775 789999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
++| ||+++|+|++|+.++|.+||+.++.+.++..++++..||+.|+||||+||.++|++|.+.|+++..
T Consensus 164 l~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~lv~~A~l~a~~~~~--------- 234 (247)
T d1ixza_ 164 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR--------- 234 (247)
T ss_dssp GGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC---------
Confidence 998 999999999999999999999999988888899999999999999999999999999999887642
Q ss_pred hhhhccCCCCCcHHHHHHHH
Q psy3540 158 EIKQEDIDLPVTEKDFREAI 177 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al 177 (202)
..|+.+||++|+
T Consensus 235 --------~~i~~~d~~~A~ 246 (247)
T d1ixza_ 235 --------RKITMKDLEEAA 246 (247)
T ss_dssp --------SSBCHHHHHHHT
T ss_pred --------CCcCHHHHHHhh
Confidence 279999999996
No 4
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.97 E-value=3.1e-32 Score=218.29 Aligned_cols=143 Identities=31% Similarity=0.543 Sum_probs=121.5
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCC--CCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~--~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
.+++.+|..|+.++||||||||+|.++.+++. .+......++++.|+++|+++... .+|+||||||+|+.||++
T Consensus 87 ~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~~v~vi~ttn~~~~ld~a 162 (265)
T d1r7ra3 87 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK----KNVFIIGATNRPDIIDPA 162 (265)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC----------CCEEEECCBSCTTTSCG
T ss_pred HHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCC----CCEEEEEeCCCchhCCHH
Confidence 47899999999999999999999999988753 233345677999999999999775 679999999999999999
Q ss_pred HHh--cccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy3540 80 FRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 80 l~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~ 148 (202)
++| ||+++|+|+.|+.++|.+||+.++++.....++++..||..|+|||++||..+|++|...|+++..
T Consensus 163 l~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~lv~~A~~~A~~~~~ 233 (265)
T d1r7ra3 163 ILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 233 (265)
T ss_dssp GGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHC-
T ss_pred HhCCCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 998 999999999999999999999999998888889999999999999999999999999999997754
No 5
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}
Probab=99.73 E-value=1.5e-20 Score=152.67 Aligned_cols=102 Identities=19% Similarity=0.193 Sum_probs=80.0
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCc----c
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI----D 77 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~l----d 77 (202)
++++.+|+.|+. ||||||||||+++++|+++..++...+++++||++||++... .+|+|||||| |+.+ |
T Consensus 171 ~~~~~~f~~a~~--~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~----~~v~viaatN-~~~~~~~i~ 243 (321)
T d1w44a_ 171 VFVDDIARAMLQ--HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAAS----RGCVVIASLN-PTSNDDKIV 243 (321)
T ss_dssp HHHHHHHHHHHH--CSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHH----HTCEEEEECC-CCCCCHHHH
T ss_pred HHHHHHHHHHhh--ccEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccC----CCeEEEEeCC-Ccccccchh
Confidence 579999999985 899999999999999976666666678999999999999886 7899999999 5555 4
Q ss_pred HHHHh--cccceeeecCCCHHHHHHHHHHHhcCcc
Q psy3540 78 EAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVV 110 (202)
Q Consensus 78 ~al~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~ 110 (202)
+++.| ||++.++++.|+.+.|.+||+.+..++.
T Consensus 244 ~~~~r~~Rf~~~v~v~~pd~~~r~~il~~~~~~~~ 278 (321)
T d1w44a_ 244 ELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQ 278 (321)
T ss_dssp HHHHHHHHHSCSEEEEECSSTTEEEEEEECBTTCC
T ss_pred hhhhccCcccceeecCCCChHHHHHHHHHhccCcc
Confidence 55567 9999999999999999999988876654
No 6
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=99.73 E-value=7.2e-19 Score=138.47 Aligned_cols=120 Identities=14% Similarity=0.142 Sum_probs=93.4
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH-H
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA-F 80 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a-l 80 (202)
++|+.+|+.|+..+||||||||+|.+++.+..+. ...++++++|+..+++.... ..+|+||||||+|+.+|++ +
T Consensus 87 ~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~--~~~~~~~~~ll~~l~~~~~~---~~~v~vi~tTn~~~~ld~~~~ 161 (246)
T d1d2na_ 87 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP--RFSNLVLQALLVLLKKAPPQ---GRKLLIIGTTSRKDVLQEMEM 161 (246)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT--BCCHHHHHHHHHHTTCCCST---TCEEEEEEEESCHHHHHHTTC
T ss_pred hhhhhhhhhhhhcccceeehhhhhhHhhhccccc--chhHHHHHHHHHHhcCCCcc---ccceeeeeccCChhhccchhh
Confidence 5689999999999999999999999998774422 23467889999999998764 4689999999999999986 4
Q ss_pred HhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCH
Q psy3540 81 RRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTG 129 (202)
Q Consensus 81 ~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~ 129 (202)
++||+.+|++ |+..+|.+|++.+..... -.+.++..+++.+.|.+.
T Consensus 162 ~~rF~~~i~~--P~~~~r~~il~~l~~~~~-~~~~~~~~i~~~~~g~~~ 207 (246)
T d1d2na_ 162 LNAFSTTIHV--PNIATGEQLLEALELLGN-FKDKERTTIAQQVKGKKV 207 (246)
T ss_dssp TTTSSEEEEC--CCEEEHHHHHHHHHHHTC-SCHHHHHHHHHHHTTSEE
T ss_pred cCccceEEec--CCchhHHHHHHHHHhccC-CChHHHHHHHHHcCCCcc
Confidence 4599999987 555556666665543322 246678889999988653
No 7
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=99.32 E-value=2.3e-12 Score=103.92 Aligned_cols=105 Identities=18% Similarity=0.247 Sum_probs=81.7
Q ss_pred hHHHHHHHHhhh-----CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCC----CCceEEEEEe---
Q psy3540 2 REVQRTNVPSNS-----YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY----EDKIIMILAA--- 69 (202)
Q Consensus 2 k~i~~~F~~A~~-----~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~----~~~~v~viat--- 69 (202)
+.++.+|..|+. .+||||||||+|.+++.+...........+.+.||..+||.....+ ...+|++|++
T Consensus 97 ~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ga~ 176 (309)
T d1ofha_ 97 SIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAF 176 (309)
T ss_dssp HHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECC
T ss_pred ccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEeccch
Confidence 457889999865 3699999999999998775544433445688999999998543210 0123566766
Q ss_pred -cCCCCCccHHHHhcccceeeecCCCHHHHHHHHHHHh
Q psy3540 70 -TNHPWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCL 106 (202)
Q Consensus 70 -Tn~~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l 106 (202)
++.|+.++|+++.||+..+.++.|+..++.+|++.+.
T Consensus 177 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~~~~ 214 (309)
T d1ofha_ 177 QVARPSDLIPELQGRLPIRVELTALSAADFERILTEPH 214 (309)
T ss_dssp SSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSST
T ss_pred hhcCcccchhhhhhhhheeeeccCCCHHHHHHHHHHHH
Confidence 6889999999999999999999999999999987654
No 8
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=99.06 E-value=1.9e-09 Score=82.69 Aligned_cols=137 Identities=14% Similarity=0.108 Sum_probs=98.2
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC------------CCCCceEEEEEecCCCCCccHHHH
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS------------LYEDKIIMILAATNHPWDIDEAFR 81 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~------------~~~~~~v~viatTn~~~~ld~al~ 81 (202)
...+++||||+|.+.... -..++..+...... .....++++|++||++..++++++
T Consensus 85 ~~~~~~~ide~~~~~~~~------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~ 152 (238)
T d1in4a2 85 ERGDVLFIDEIHRLNKAV------------EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLR 152 (238)
T ss_dssp CTTCEEEEETGGGCCHHH------------HHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHH
T ss_pred ccCCchHHHHHHHhhhHH------------HhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCccccccce
Confidence 356899999999985432 12222222221100 001246899999999999999999
Q ss_pred hcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhh
Q psy3540 82 RRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIK 160 (202)
Q Consensus 82 rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~ 160 (202)
+||...+.++.|+..++..+++......... .+..+..++..+.| +++++-++++.+...+......
T Consensus 153 ~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~g-d~R~ai~~l~~~~~~~~~~~~~----------- 220 (238)
T d1in4a2 153 SRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVKAD----------- 220 (238)
T ss_dssp TTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHTCS-----------
T ss_pred eeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcCC-----------
Confidence 9999999999999999999999998766554 33357888888876 7888888888776655443221
Q ss_pred hccCCCCCcHHHHHHHHHHh
Q psy3540 161 QEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 161 ~~~~~~~it~~df~~Al~~~ 180 (202)
.||.++..+|++.+
T Consensus 221 ------~it~~~~~~al~~l 234 (238)
T d1in4a2 221 ------RINTDIVLKTMEVL 234 (238)
T ss_dssp ------SBCHHHHHHHHHHH
T ss_pred ------ccCHHHHHHHHHhh
Confidence 58899999988764
No 9
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=98.82 E-value=1.9e-08 Score=77.96 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=97.2
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc------HHHHhcccc
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID------EAFRRRFEK 86 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld------~al~rrf~~ 86 (202)
...+.++++||+|.+...... .......+..+.+.+...... ..+.+|+.+|.++..+ +.+.+||..
T Consensus 130 ~~~~~~~iide~d~l~~~~~~---~~~~~~~l~~l~~~l~~~~~~----~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~ 202 (287)
T d1w5sa2 130 ENHYLLVILDEFQSMLSSPRI---AAEDLYTLLRVHEEIPSRDGV----NRIGFLLVASDVRALSYMREKIPQVESQIGF 202 (287)
T ss_dssp HTCEEEEEEESTHHHHSCTTS---CHHHHHHHHTHHHHSCCTTSC----CBEEEEEEEEETHHHHHHHHHCHHHHTTCSE
T ss_pred ccCccccceeEEEEecccccc---chhHHHHHHHHHHhcchhhcc----cceeEEeecccHHHHHHHHhhccchhcccce
Confidence 346778899999999765532 222223344445555554443 5566777777665443 566679999
Q ss_pred eeeecCCCHHHHHHHHHHHhcCcccC---CcccHHHHHHHccCC-----CHHHHHHHHHHHHHHHHHHHHhcCChhHHhh
Q psy3540 87 RVYIPLPNEWARYQLLTLCLEGVVID---VNLDFHKISKMLEGY-----TGSDIANLARDAAMMSIRRKIMGQTPAQIKE 158 (202)
Q Consensus 87 ~i~i~~P~~~~R~~il~~~l~~~~~~---~~~~~~~la~~t~g~-----s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~ 158 (202)
.++++.++.++..+|++..++..... .+..+..+|+.+.++ .++..-.+|+.|...|..+..
T Consensus 203 ~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~~~~~~~~gd~R~ai~~l~~a~~~A~~~~~---------- 272 (287)
T d1w5sa2 203 KLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGR---------- 272 (287)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred eeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHcCC----------
Confidence 99999999999999999888543222 233477888877543 456666788888777654422
Q ss_pred hhhccCCCCCcHHHHHHHHHH
Q psy3540 159 IKQEDIDLPVTEKDFREAIAR 179 (202)
Q Consensus 159 ~~~~~~~~~it~~df~~Al~~ 179 (202)
..||.+|+.+|+++
T Consensus 273 -------~~It~~~V~~A~~e 286 (287)
T d1w5sa2 273 -------DSLSEDLVRKAVSE 286 (287)
T ss_dssp -------SSCCHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHhc
Confidence 27999999999875
No 10
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=98.75 E-value=6e-08 Score=74.47 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=81.5
Q ss_pred HHHHHHHhhhC----CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH
Q psy3540 4 VQRTNVPSNSY----RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA 79 (202)
Q Consensus 4 i~~~F~~A~~~----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a 79 (202)
++++.+.+... ..-|++|||+|.+.. ...+.|+..|+... .++.+|++||+++.+.++
T Consensus 100 ir~~~~~~~~~~~~~~~kviiIde~d~l~~------------~~q~~Llk~lE~~~------~~~~~il~tn~~~~i~~~ 161 (239)
T d1njfa_ 100 TRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------HSFNALLKTLEEPP------EHVKFLLATTDPQKLPVT 161 (239)
T ss_dssp HHHHHHSCCCSCSSSSSEEEEEETGGGSCH------------HHHHHHHHHHHSCC------TTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHhccccCCCEEEEEECcccCCH------------HHHHHHHHHHhcCC------CCeEEEEEcCCccccChh
Confidence 55566665321 235999999999832 23467888888654 347888899999999999
Q ss_pred HHhcccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHH
Q psy3540 80 FRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLAR 137 (202)
Q Consensus 80 l~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~ 137 (202)
+++|+ ..+.++.|+.++-..++...+...... ++..+..++..+.| +.+..-++++
T Consensus 162 i~SRc-~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~G-d~R~ain~l~ 218 (239)
T d1njfa_ 162 ILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTD 218 (239)
T ss_dssp HHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTT-CHHHHHHHHH
T ss_pred Hhhhh-cccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 99988 578999999999888888887533322 34467888888876 4444444443
No 11
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=98.67 E-value=7.8e-08 Score=73.46 Aligned_cols=136 Identities=18% Similarity=0.113 Sum_probs=93.1
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCC-----CCC-------CCCCceEEEEEecCCCCCccHHHHh
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGL-----NSS-------LYEDKIIMILAATNHPWDIDEAFRR 82 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~-----~~~-------~~~~~~v~viatTn~~~~ld~al~r 82 (202)
..+|+||||+|.+.... ...++..|+.. ... .....++++|++|+++...+++.++
T Consensus 87 ~~~i~~iDe~~~~~~~~------------~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 154 (239)
T d1ixsb2 87 EGDILFIDEIHRLSRQA------------EEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS 154 (239)
T ss_dssp TTCEEEEETGGGCCHHH------------HHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGG
T ss_pred CCCeeeeecccccchhH------------HHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCcccccchhhc
Confidence 45799999999985321 12233333221 000 0012457888999999999999999
Q ss_pred cccceeeecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhh
Q psy3540 83 RFEKRVYIPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQ 161 (202)
Q Consensus 83 rf~~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~ 161 (202)
|+...+.+..|+.+++..++...+....+. ..-.+..++..+.| +.++..++++.+...+... +
T Consensus 155 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~g-d~R~a~~~l~~~~~~a~~~---~----------- 219 (239)
T d1ixsb2 155 RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVA---G----------- 219 (239)
T ss_dssp GCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTS-SHHHHHHHHHHHHHHHTTS---C-----------
T ss_pred ccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHh---C-----------
Confidence 999999999999999999999888765544 23357889999988 5566656666554332111 1
Q ss_pred ccCCCCCcHHHHHHHHHHh
Q psy3540 162 EDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 162 ~~~~~~it~~df~~Al~~~ 180 (202)
...||.++..+++..+
T Consensus 220 ---~~~It~~~~~~~l~~l 235 (239)
T d1ixsb2 220 ---EEVITRERALEALAAL 235 (239)
T ss_dssp ---CSCBCHHHHHHHHHHH
T ss_pred ---CCCcCHHHHHHHHhhh
Confidence 1268999999998754
No 12
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.58 E-value=2.6e-07 Score=70.67 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=74.1
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCH
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNE 95 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~ 95 (202)
..+++|||+|.+... ..+.|+..++... .++.+|++||.++.+++++++|| ..|+|+.|+.
T Consensus 132 ~~iiiide~d~l~~~------------~~~~l~~~~e~~~------~~~~~Il~tn~~~~i~~~l~sR~-~~i~~~~~~~ 192 (252)
T d1sxje2 132 YKCVIINEANSLTKD------------AQAALRRTMEKYS------KNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSD 192 (252)
T ss_dssp CEEEEEECTTSSCHH------------HHHHHHHHHHHST------TTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCH
T ss_pred ceEEEeccccccccc------------cchhhhccccccc------ccccceeeeccccchhhhhhcch-heeeecccch
Confidence 459999999998332 2455666666544 34778899999999999999998 5899999999
Q ss_pred HHHHHHHHHHhcC--cccCCcccHHHHHHHccCCCHHHHHHHH
Q psy3540 96 WARYQLLTLCLEG--VVIDVNLDFHKISKMLEGYTGSDIANLA 136 (202)
Q Consensus 96 ~~R~~il~~~l~~--~~~~~~~~~~~la~~t~g~s~~dl~~l~ 136 (202)
++...+++..+.. ....++.-+..|+..+.| |++.++
T Consensus 193 ~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~G----d~R~ai 231 (252)
T d1sxje2 193 SEISTILSDVVTNERIQLETKDILKRIAQASNG----NLRVSL 231 (252)
T ss_dssp HHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT----CHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC----cHHHHH
Confidence 9999999988854 334444456788988776 565543
No 13
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.57 E-value=4.7e-07 Score=68.56 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=75.0
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCCH
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPNE 95 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~~ 95 (202)
.-||+|||+|.+... ..+.++..+..... ...+|.+++.++.+.+++++|| ..+.|+.|+.
T Consensus 109 ~~viiiDe~d~l~~~------------~~~~l~~~~~~~~~------~~~~i~~~~~~~~~~~~l~sr~-~~i~f~~~~~ 169 (237)
T d1sxjd2 109 YKIIILDEADSMTAD------------AQSALRRTMETYSG------VTRFCLICNYVTRIIDPLASQC-SKFRFKALDA 169 (237)
T ss_dssp CEEEEETTGGGSCHH------------HHHHHHHHHHHTTT------TEEEEEEESCGGGSCHHHHHHS-EEEECCCCCH
T ss_pred ceEEEEecccccCHH------------HHHHHhhccccccc------cccccccccccccccccccchh-hhhccccccc
Confidence 348999999998532 23445555554433 3567788899999999999998 6789999999
Q ss_pred HHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q psy3540 96 WARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDAA 140 (202)
Q Consensus 96 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A~ 140 (202)
.+-..+|+..+.+..+. ++..+..+|+.+.| +.+..-++++.+.
T Consensus 170 ~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~g-d~R~ai~~L~~~~ 214 (237)
T d1sxjd2 170 SNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQSAS 214 (237)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHHTH
T ss_pred cccchhhhhhhhhhcCcCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999999998755443 34457899999876 4444334444443
No 14
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=98.55 E-value=3.1e-07 Score=69.65 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=78.4
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecC
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPL 92 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~ 92 (202)
...+.|+++||+|.+... ..+.|+..++... .++++|++||.+..+++++++|+ ..+.++.
T Consensus 107 ~~~~~iilide~d~~~~~------------~~~~ll~~l~~~~------~~~~~i~~~n~~~~i~~~l~sR~-~~i~~~~ 167 (231)
T d1iqpa2 107 GASFKIIFLDEADALTQD------------AQQALRRTMEMFS------SNVRFILSCNYSSKIIEPIQSRC-AIFRFRP 167 (231)
T ss_dssp GCSCEEEEEETGGGSCHH------------HHHHHHHHHHHTT------TTEEEEEEESCGGGSCHHHHHTE-EEEECCC
T ss_pred CCCceEEeehhhhhcchh------------HHHHHhhhcccCC------cceEEEeccCChhhchHhHhCcc-ccccccc
Confidence 346889999999987542 2345666666544 34788999999999999999998 4699999
Q ss_pred CCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHH
Q psy3540 93 PNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLA 136 (202)
Q Consensus 93 P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~ 136 (202)
|+..+...+++..+.+..+. ++-.+..+++.+.| +++++-+++
T Consensus 168 ~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~g-diR~ai~~L 211 (231)
T d1iqpa2 168 LRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINIL 211 (231)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 99999999999999766553 34567889988776 444443333
No 15
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.43 E-value=1.8e-07 Score=70.75 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=72.4
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
...||+|||+|.+... ..+.|+..|+.... ..+++.+||.+..+++++++|+ ..+.|+.|+
T Consensus 99 ~~kiiiiDe~d~~~~~------------~~~~Ll~~le~~~~------~~~~~~~~~~~~~i~~~i~sr~-~~i~~~~~~ 159 (227)
T d1sxjc2 99 GFKLIILDEADAMTNA------------AQNALRRVIERYTK------NTRFCVLANYAHKLTPALLSQC-TRFRFQPLP 159 (227)
T ss_dssp SCEEEEETTGGGSCHH------------HHHHHHHHHHHTTT------TEEEEEEESCGGGSCHHHHTTS-EEEECCCCC
T ss_pred CeEEEEEeccccchhh------------HHHHHHHHhhhccc------ceeeccccCcHHHhHHHHHHHH-hhhcccccc
Confidence 3469999999987432 24567777776543 4788889999999999999987 578899999
Q ss_pred HHHHHHHHHHHhcCcccC-CcccHHHHHHHccC
Q psy3540 95 EWARYQLLTLCLEGVVID-VNLDFHKISKMLEG 126 (202)
Q Consensus 95 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 126 (202)
..+-..++...+....+. ++..++.+++.+.|
T Consensus 160 ~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~G 192 (227)
T d1sxjc2 160 QEAIERRIANVLVHEKLKLSPNAEKALIELSNG 192 (227)
T ss_dssp HHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccCCHHHHHHHHHHcCC
Confidence 999999999888654433 34567889998876
No 16
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=98.39 E-value=1e-06 Score=67.46 Aligned_cols=137 Identities=9% Similarity=0.007 Sum_probs=90.8
Q ss_pred hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC---CCCccHHHHhcc-ccee
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH---PWDIDEAFRRRF-EKRV 88 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~---~~~ld~al~rrf-~~~i 88 (202)
...+.++++|++|.+.... ......++..+..... ..+.+|++++. .+.+++.+.+|+ ...|
T Consensus 122 ~~~~~~~~~~~~d~~~~~~---------~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i 187 (276)
T d1fnna2 122 RDLYMFLVLDDAFNLAPDI---------LSTFIRLGQEADKLGA-----FRIALVIVGHNDAVLNNLDPSTRGIMGKYVI 187 (276)
T ss_dssp TTCCEEEEEETGGGSCHHH---------HHHHHHHTTCHHHHSS-----CCEEEEEEESSTHHHHTSCHHHHHHHTTCEE
T ss_pred cccccccchhHHHHhhhhh---------hhhHHHHHhccccccc-----cceEEeecCCchhhhhhcchhhhhhhcchhc
Confidence 3457788899999874321 1122233322222222 45677888887 456788888855 4678
Q ss_pred eecCCCHHHHHHHHHHHhcCccc---CCcccHHHHHHHccCC--------CHHHHHHHHHHHHHHHHHHHHhcCChhHHh
Q psy3540 89 YIPLPNEWARYQLLTLCLEGVVI---DVNLDFHKISKMLEGY--------TGSDIANLARDAAMMSIRRKIMGQTPAQIK 157 (202)
Q Consensus 89 ~i~~P~~~~R~~il~~~l~~~~~---~~~~~~~~la~~t~g~--------s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~ 157 (202)
.++.|+.+++.+|++..+..... ..+..+..++..+.++ +++.+.++|+.|...|..+..
T Consensus 188 ~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~~~A~~~~~--------- 258 (276)
T d1fnna2 188 RFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGR--------- 258 (276)
T ss_dssp ECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred cccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcCCCHHHHHHHHHHHHHHHHHcCC---------
Confidence 99999999999999988753222 1344466777776322 456677888888777765432
Q ss_pred hhhhccCCCCCcHHHHHHHHHHh
Q psy3540 158 EIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 158 ~~~~~~~~~~it~~df~~Al~~~ 180 (202)
..|+.+|+++|++++
T Consensus 259 --------~~I~~edv~~A~~~~ 273 (276)
T d1fnna2 259 --------KHIAPEDVRKSSKEV 273 (276)
T ss_dssp --------SSCCHHHHHHHHHHH
T ss_pred --------CCcCHHHHHHHHHHH
Confidence 279999999999875
No 17
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.37 E-value=2.2e-06 Score=65.47 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=71.4
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
.+.++++||+|.+..... .....++....... .+++++++++....+++ ++|+...++|+.|+
T Consensus 123 ~~~vi~ide~~~~~~~~~---------~~~~~~~~~~~~~~------~~ii~i~~~~~~~~~~~--l~~~~~~i~f~~~~ 185 (253)
T d1sxja2 123 KHFVIIMDEVDGMSGGDR---------GGVGQLAQFCRKTS------TPLILICNERNLPKMRP--FDRVCLDIQFRRPD 185 (253)
T ss_dssp TSEEEEECSGGGCCTTST---------THHHHHHHHHHHCS------SCEEEEESCTTSSTTGG--GTTTSEEEECCCCC
T ss_pred cceEEEeeeccccccchh---------hhhHHHhhhhcccc------ccccccccccccccccc--ccceeeeeeccccc
Confidence 578999999999865431 12334444444433 34777777777777764 45667899999999
Q ss_pred HHHHHHHHHHHhc--CcccCCcccHHHHHHHccCCCHHHHHHHHH
Q psy3540 95 EWARYQLLTLCLE--GVVIDVNLDFHKISKMLEGYTGSDIANLAR 137 (202)
Q Consensus 95 ~~~R~~il~~~l~--~~~~~~~~~~~~la~~t~g~s~~dl~~l~~ 137 (202)
..++..+++..+. +..++ +..+..|+..+.| ||+.++.
T Consensus 186 ~~~i~~~l~~i~~~e~i~i~-~~~l~~i~~~s~G----DiR~ai~ 225 (253)
T d1sxja2 186 ANSIKSRLMTIAIREKFKLD-PNVIDRLIQTTRG----DIRQVIN 225 (253)
T ss_dssp HHHHHHHHHHHHHHHTCCCC-TTHHHHHHHHTTT----CHHHHHH
T ss_pred hhHHHHHHHHHHHHhCCCCC-HHHHHHHHHhCCC----cHHHHHH
Confidence 9999999999985 44444 3468899998865 7766554
No 18
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}
Probab=98.36 E-value=3.1e-07 Score=74.80 Aligned_cols=140 Identities=9% Similarity=-0.067 Sum_probs=87.3
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCC-C-CCc-e-----EEEEEecCCCCC
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSL-Y-EDK-I-----IMILAATNHPWD 75 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~-~-~~~-~-----v~viatTn~~~~ 75 (202)
.+..|.......+++.+||+++..+..+......-.. .-+..|...+||..... . ... . -.+|+|||.++
T Consensus 190 ~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~-DeiD~l~~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~~~- 267 (362)
T d1svma_ 190 DRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGI-NNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYS- 267 (362)
T ss_dssp TTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHH-HHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCC-
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEE-ehHhhcccccCCcchhhhhhhhhchhhhccCCceeeccccc-
Confidence 3455655666677778888887766554332211111 11234555556542110 0 000 1 12778999532
Q ss_pred ccHHHHh-cccceeeecCCCHHHHH-HHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q psy3540 76 IDEAFRR-RFEKRVYIPLPNEWARY-QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 76 ld~al~r-rf~~~i~i~~P~~~~R~-~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~ 148 (202)
.+.++. ||+..+++..|+...|. .++..++++..+. .+.+.|+..+.|++++|+.++++.+...+.++..
T Consensus 268 -~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~--~~~~~L~~li~~~s~~D~~~~i~~~~~~~~~~l~ 339 (362)
T d1svma_ 268 -VPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQ--SGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLD 339 (362)
T ss_dssp -CCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTT--CHHHHHHHHHHHSCGGGSCGGGHHHHHHHHHHHH
T ss_pred -ccccccccCceEEeecCCCcHHHHHHHHHHHhcccCCC--CCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 333333 99999999999877775 4556666655543 5667799999999999999999999888776654
No 19
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=98.32 E-value=3.5e-06 Score=65.58 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=95.1
Q ss_pred HHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC-----CCCcc
Q psy3540 3 EVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH-----PWDID 77 (202)
Q Consensus 3 ~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~-----~~~ld 77 (202)
.++.++..+....++|+||||++.|++..++.+++ ..+-+.|..+-.. +.+-+||+|.. ...-|
T Consensus 98 r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~-------~d~a~~Lkp~L~r----g~i~vIgatT~eey~~~~e~d 166 (268)
T d1r6bx2 98 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ-------VDAANLIKPLLSS----GKIRVIGSTTYQEFSNIFEKD 166 (268)
T ss_dssp HHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH-------HHHHHHHSSCSSS----CCCEEEEEECHHHHHCCCCCT
T ss_pred HHHHHHHHhhccCCceEEecchHHHhcCCCCCCcc-------ccHHHHhhHHHhC----CCCeEEEeCCHHHHHHHHhhc
Confidence 56788899988888999999999998764333221 1222333334333 56778888764 34668
Q ss_pred HHHHhcccceeeecCCCHHHHHHHHHHHhcCc------ccCCcccHHHHHHHcc-----CCCHHHHHHHHHHHHHHHHHH
Q psy3540 78 EAFRRRFEKRVYIPLPNEWARYQLLTLCLEGV------VIDVNLDFHKISKMLE-----GYTGSDIANLARDAAMMSIRR 146 (202)
Q Consensus 78 ~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~------~~~~~~~~~~la~~t~-----g~s~~dl~~l~~~A~~~a~~~ 146 (202)
+++.|||. +|.+..|+.++-..||+.+...+ .+. +.-+..+...+. .+-|.---.++.+|+..+...
T Consensus 167 ~al~rrF~-~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~-~~al~~~v~ls~ryi~~~~~PdKAIdllDea~a~~~~~ 244 (268)
T d1r6bx2 167 RALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT-AKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM 244 (268)
T ss_dssp TSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhc-ccccCCCCHHHHHHHHHHhhHHHhccCCEEeC-hHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhh
Confidence 99999994 78999999999999998766432 222 223344443332 222333334667765443221
Q ss_pred HHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhC
Q psy3540 147 KIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCR 181 (202)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 181 (202)
... .....++.+|+...+.++.
T Consensus 245 ~~~-------------~~~~~i~~~di~~~i~~~~ 266 (268)
T d1r6bx2 245 PVS-------------KRKKTVNVADIESVVARIA 266 (268)
T ss_dssp SSC-------------CCCCSCCHHHHHHHHHHHS
T ss_pred ccc-------------cCcccCCHHHHHHHHHHHh
Confidence 111 1122578888888877653
No 20
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=98.15 E-value=4.2e-06 Score=62.57 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=74.2
Q ss_pred HHHHHHHHhh----hCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSN----SYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~----~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.||++...+. ....-|++|||+|.+-.. ..+.|+..|+.-. .++++|.+|+++..|.+
T Consensus 92 ~ir~l~~~~~~~~~~~~~kviIide~d~l~~~------------a~n~Llk~lEep~------~~~~fIl~t~~~~~ll~ 153 (207)
T d1a5ta2 92 AVREVTEKLNEHARLGGAKVVWVTDAALLTDA------------AANALLKTLEEPP------AETWFFLATREPERLLA 153 (207)
T ss_dssp HHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH------------HHHHHHHHHTSCC------TTEEEEEEESCGGGSCH
T ss_pred hhhHHhhhhhhccccCccceEEechhhhhhhh------------hhHHHHHHHHhhc------ccceeeeeecChhhhhh
Confidence 3555555543 234669999999998532 3678899888754 44889999999999999
Q ss_pred HHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccC
Q psy3540 79 AFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEG 126 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g 126 (202)
++++|+ ..+.|+.|+.++-..+|+... .+ ++..+..++..+.|
T Consensus 154 tI~SRc-~~i~~~~~~~~~~~~~L~~~~---~~-~~~~~~~i~~~s~G 196 (207)
T d1a5ta2 154 TLRSRC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG 196 (207)
T ss_dssp HHHTTS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT
T ss_pred hhccee-EEEecCCCCHHHHHHHHHHcC---CC-CHHHHHHHHHHcCC
Confidence 999997 799999999988887776433 22 24456677777665
No 21
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.08 E-value=1.5e-05 Score=59.74 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=69.8
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeecCCC
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIPLPN 94 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~~P~ 94 (202)
.+-|++|||+|.+.... .+.|+..+..... ...++.+|+....+.+++++|+ ..+.|+.|+
T Consensus 101 ~~kviiiDe~d~~~~~~------------~~~ll~~~e~~~~------~~~~i~~~~~~~~i~~~l~sr~-~~i~~~~~~ 161 (224)
T d1sxjb2 101 KHKIVILDEADSMTAGA------------QQALRRTMELYSN------STRFAFACNQSNKIIEPLQSQC-AILRYSKLS 161 (224)
T ss_dssp CCEEEEEESGGGSCHHH------------HHTTHHHHHHTTT------TEEEEEEESCGGGSCHHHHTTS-EEEECCCCC
T ss_pred ceEEEEEecccccchhH------------HHHHhhhcccccc------ceeeeeccCchhhhhhHHHHHH-HHhhhcccc
Confidence 35699999999985422 3456666665443 3677888899999999999988 469999999
Q ss_pred HHHHHHHHHHHhcCcccC-CcccHHHHHHHccC
Q psy3540 95 EWARYQLLTLCLEGVVID-VNLDFHKISKMLEG 126 (202)
Q Consensus 95 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 126 (202)
.++...++...+.+..+. ++-.+..++..+.|
T Consensus 162 ~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~G 194 (224)
T d1sxjb2 162 DEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG 194 (224)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCC
Confidence 999999999888644333 23357788888765
No 22
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=98.07 E-value=1.3e-05 Score=60.10 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=73.8
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc---HHHHhccc--ceee
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID---EAFRRRFE--KRVY 89 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld---~al~rrf~--~~i~ 89 (202)
...+|+|||+|.+.++.. .-..|...++.+... ++-+|+++...|..++ +.|++||. ..+.
T Consensus 97 ~~dll~iDDi~~i~~~~~----------~~~~lf~lin~~~~~----~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~ 162 (213)
T d1l8qa2 97 SVDLLLLDDVQFLSGKER----------TQIEFFHIFNTLYLL----EKQIILASDRHPQKLDGVSDRLVSRFEGGILVE 162 (213)
T ss_dssp TCSEEEEECGGGGTTCHH----------HHHHHHHHHHHHHHT----TCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEE
T ss_pred hccchhhhhhhhhcCchH----------HHHHHHHHHHHHhhc----cceEEEecCCcchhccccchHHHHHhhCceEEE
Confidence 457999999999975431 122344444444433 4457778888887665 78888775 4566
Q ss_pred ecCCCHHHHHHHHHHHhcCcccC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 90 IPLPNEWARYQLLTLCLEGVVID-VNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 90 i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
++ |+.++|..+++.++....+. ++..++.|++++. +.+||..+++.-
T Consensus 163 i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~~--~~R~L~~~l~~l 210 (213)
T d1l8qa2 163 IE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK--NVREIEGKIKLI 210 (213)
T ss_dssp CC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCS--SHHHHHHHHHHH
T ss_pred EC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC--cHHHHHHHHHHh
Confidence 65 67789999999999654443 3456788999874 688888877653
No 23
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=97.80 E-value=1.8e-05 Score=64.64 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=71.3
Q ss_pred HHHHHHHHhhhCC-CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC-----CCCc
Q psy3540 3 EVQRTNVPSNSYR-VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH-----PWDI 76 (202)
Q Consensus 3 ~i~~~F~~A~~~~-P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~-----~~~l 76 (202)
.+..+...+.... +.||||||++.|++..++.+.. .+.+.|.-.|.. +.+-+||+|.. .+.
T Consensus 102 r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~----d~a~~Lkp~L~r--------g~~~~I~~tT~~ey~~~e~- 168 (387)
T d1qvra2 102 RLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAV----DAGNMLKPALAR--------GELRLIGATTLDEYREIEK- 168 (387)
T ss_dssp HHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHHT--------TCCCEEEEECHHHHHHHTT-
T ss_pred HHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcc----cHHHHHHHHHhC--------CCcceeeecCHHHHHHhcc-
Confidence 4566777776664 7899999999998765332221 223333333322 34567777763 333
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccC-----CcccHHHHHHHc-----cCCCHHHHHHHHHHHHHHH
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVID-----VNLDFHKISKML-----EGYTGSDIANLARDAAMMS 143 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t-----~g~s~~dl~~l~~~A~~~a 143 (202)
|+||.|||. .|.++.|+.++-..||+.....+... .+--+...+..+ ..+-|.---.++.+|+...
T Consensus 169 d~al~rrF~-~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a~a~~ 244 (387)
T d1qvra2 169 DPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARL 244 (387)
T ss_dssp CTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHH
T ss_pred cHHHHHhcc-cccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhcccccccccChhhHHHHHHHHHHHH
Confidence 788889995 78999999999999999887543211 222344555543 4455666666777765443
No 24
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=97.76 E-value=1.1e-05 Score=59.74 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhCC-CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCC-----CCCc
Q psy3540 3 EVQRTNVPSNSYR-VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH-----PWDI 76 (202)
Q Consensus 3 ~i~~~F~~A~~~~-P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~-----~~~l 76 (202)
.+..+++.+..+. +.|+||||+..|++...+.+... +.+.|.-.|.. ..+-+||+|.. .-.-
T Consensus 102 rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d----~~~~Lkp~L~r--------g~l~~IgatT~eey~~~~e~ 169 (195)
T d1jbka_ 102 RLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD----AGNMLKPALAR--------GELHCVGATTLDEYRQYIEK 169 (195)
T ss_dssp HHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC----CHHHHHHHHHT--------TSCCEEEEECHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCccc----HHHHHHHHHhC--------CCceEEecCCHHHHHHHHHc
Confidence 4677887776655 68999999999987543322212 22333333432 33567777663 2245
Q ss_pred cHHHHhcccceeeecCCCHHHHHHHH
Q psy3540 77 DEAFRRRFEKRVYIPLPNEWARYQLL 102 (202)
Q Consensus 77 d~al~rrf~~~i~i~~P~~~~R~~il 102 (202)
|++|.|||. .|.+..|+.++-..||
T Consensus 170 d~aL~rrF~-~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 170 DAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred CHHHHhcCC-EeecCCCCHHHHHHHh
Confidence 899999995 7888999998877665
No 25
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}
Probab=97.62 E-value=0.00073 Score=53.30 Aligned_cols=135 Identities=15% Similarity=0.115 Sum_probs=84.0
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC-------CCCCceEEEEEecCC-CCCccHHHHhccccee
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS-------LYEDKIIMILAATNH-PWDIDEAFRRRFEKRV 88 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~-------~~~~~~v~viatTn~-~~~ld~al~rrf~~~i 88 (202)
.|+|+||++.+- .++.+.|++-|+.-.-. ..-..+.++++|+|- +..++++++.||+..+
T Consensus 129 gvl~iDEi~~~~------------~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i 196 (333)
T d1g8pa_ 129 GYLYIDECNLLE------------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSV 196 (333)
T ss_dssp EEEEETTGGGSC------------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEE
T ss_pred cEeecccHHHHH------------HHHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhhhhccee
Confidence 699999998763 24678888888732100 001134678888886 5678999999999999
Q ss_pred eecCC-CHHHHHHHHHHHhc-------------------------------CcccCCc--ccHHHHHHHccCCCHHHHHH
Q psy3540 89 YIPLP-NEWARYQLLTLCLE-------------------------------GVVIDVN--LDFHKISKMLEGYTGSDIAN 134 (202)
Q Consensus 89 ~i~~P-~~~~R~~il~~~l~-------------------------------~~~~~~~--~~~~~la~~t~g~s~~dl~~ 134 (202)
.++.| +...|.++...... +.....+ ..+..++......|.+-...
T Consensus 197 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~S~R~~~~ 276 (333)
T d1g8pa_ 197 EVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELT 276 (333)
T ss_dssp ECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHH
T ss_pred eccCcchhhHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHHHhhcccceecCHHHHHHHHHHHHHcCCCChHHHHH
Confidence 99887 55666655543221 1111100 11223344445557777777
Q ss_pred HHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHh
Q psy3540 135 LARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 135 l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 180 (202)
+++-|...|..+.. ..|+.+|+.+|+.-+
T Consensus 277 llrvArtiA~L~gr-----------------~~V~~~di~~a~~lv 305 (333)
T d1g8pa_ 277 LLRSARALAALEGA-----------------TAVGRDHLKRVATMA 305 (333)
T ss_dssp HHHHHHHHHHHTTC-----------------SBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-----------------CCCCHHHHHHHHHHH
Confidence 77777666654422 269999999976643
No 26
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=97.49 E-value=0.00055 Score=53.98 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=89.9
Q ss_pred HhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCC-----CCCCceEEEEEecCC------------
Q psy3540 10 PSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS-----LYEDKIIMILAATNH------------ 72 (202)
Q Consensus 10 ~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~-----~~~~~~v~viatTn~------------ 72 (202)
..+.+.-|||+|||+|..-+ .+.+.|+..++.-.-. .-.-.+.++|+|||-
T Consensus 120 ~~~~~p~~Vvl~DEieK~~~------------~v~~~ll~~l~~g~~~~~~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~ 187 (315)
T d1qvra3 120 AVRRRPYSVILFDEIEKAHP------------DVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKG 187 (315)
T ss_dssp HHHHCSSEEEEESSGGGSCH------------HHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTT
T ss_pred HHHhCCCcEEEEehHhhcCH------------HHHHHHHHHhccCceeCCCCcEecCcceEEEEecccChHHHhhhcccc
Confidence 33445559999999999632 3677777777652111 001256889999995
Q ss_pred --------------CCCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcc-------cC---CcccHHHHHHH--ccC
Q psy3540 73 --------------PWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV-------ID---VNLDFHKISKM--LEG 126 (202)
Q Consensus 73 --------------~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~-------~~---~~~~~~~la~~--t~g 126 (202)
...+.|.++.|||..+.|...+.++-..|+...+..+. .. .+..++.|++. ...
T Consensus 188 ~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~~~i~l~i~~~~~~~L~~~~y~~~ 267 (315)
T d1qvra3 188 WPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPV 267 (315)
T ss_dssp CCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTT
T ss_pred cchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHhCCCCC
Confidence 35588999999999999999999999999877664321 11 23346678775 567
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q psy3540 127 YTGSDIANLARDAAMMSIRRKI 148 (202)
Q Consensus 127 ~s~~dl~~l~~~A~~~a~~~~~ 148 (202)
|-++.|+..+++.....+....
T Consensus 268 ~GAR~L~r~Ie~~i~~~La~~i 289 (315)
T d1qvra3 268 FGARPLRRVIQRELETPLAQKI 289 (315)
T ss_dssp TBTSTHHHHHHHHTHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHH
Confidence 7779999999998888776543
No 27
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=97.22 E-value=0.00068 Score=49.81 Aligned_cols=74 Identities=12% Similarity=0.181 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhC----CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 3 EVQRTNVPSNSY----RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 3 ~i~~~F~~A~~~----~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.||++...+... ..-|++|||+|.+-. ...+.||..|+.-.. ++++|.+|++++.|.|
T Consensus 63 ~IR~i~~~~~~~~~~~~~KviIId~ad~l~~------------~aqNaLLK~LEEPp~------~t~fiLit~~~~~ll~ 124 (198)
T d2gnoa2 63 DIRTIKDFLNYSPELYTRKYVIVHDCERMTQ------------QAANAFLKALEEPPE------YAVIVLNTRRWHYLLP 124 (198)
T ss_dssp HHHHHHHHHTSCCSSSSSEEEEETTGGGBCH------------HHHHHTHHHHHSCCT------TEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHhhCcccCCCEEEEEeCccccch------------hhhhHHHHHHhCCCC------CceeeeccCChhhCHH
Confidence 467777666532 234999999999843 236889999987554 4788889999999999
Q ss_pred HHHhcccceeeecCCCH
Q psy3540 79 AFRRRFEKRVYIPLPNE 95 (202)
Q Consensus 79 al~rrf~~~i~i~~P~~ 95 (202)
++++|. ..+.++.|..
T Consensus 125 TI~SRC-~~i~~~~p~~ 140 (198)
T d2gnoa2 125 TIKSRV-FRVVVNVPKE 140 (198)
T ss_dssp HHHTTS-EEEECCCCHH
T ss_pred HHhcce-EEEeCCCchH
Confidence 999986 5777877754
No 28
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=96.76 E-value=0.0043 Score=48.62 Aligned_cols=127 Identities=11% Similarity=0.099 Sum_probs=85.6
Q ss_pred HHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCC--CCC---CCCceEEEEEecCCCC---------
Q psy3540 9 VPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLN--SSL---YEDKIIMILAATNHPW--------- 74 (202)
Q Consensus 9 ~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~--~~~---~~~~~v~viatTn~~~--------- 74 (202)
...+....+|++|||+|..- ..+.+.||+.+|.-. ... -.-.+.++|+|||--.
T Consensus 115 ~~~~~~~~~vvl~DeieKa~------------~~V~~~lLqild~G~ltd~~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~ 182 (315)
T d1r6bx3 115 DAVIKHPHAVLLLDEIEKAH------------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIG 182 (315)
T ss_dssp HHHHHCSSEEEEEETGGGSC------------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC--------
T ss_pred HHHHhCccchhhhccccccc------------chHhhhhHHhhccceecCCCCCccCccceEEEeccchhhHHHHhhhcc
Confidence 33455667999999999853 236778888776311 000 0124578888999421
Q ss_pred ----------------CccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcc-------cC---CcccHHHHHHH--ccC
Q psy3540 75 ----------------DIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV-------ID---VNLDFHKISKM--LEG 126 (202)
Q Consensus 75 ----------------~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~-------~~---~~~~~~~la~~--t~g 126 (202)
.+.|.++.|||..+.+...+.++-..|+..++.... .. .+-.+..|+.. ...
T Consensus 183 ~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~~i~l~~~~~a~~~l~~~~yd~~ 262 (315)
T d1r6bx3 183 LIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRA 262 (315)
T ss_dssp ---------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTT
T ss_pred chhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHhCCCCC
Confidence 366778889999999999999999998887775321 11 22335666654 466
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q psy3540 127 YTGSDIANLARDAAMMSIRRK 147 (202)
Q Consensus 127 ~s~~dl~~l~~~A~~~a~~~~ 147 (202)
|-++.|+.++++-....+.+.
T Consensus 263 ~GaR~L~r~Ie~~i~~~la~~ 283 (315)
T d1r6bx3 263 MGARPMARVIQDNLKKPLANE 283 (315)
T ss_dssp TBTTTHHHHHHHHHTHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHH
Confidence 777899998888777776554
No 29
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=95.64 E-value=0.039 Score=43.88 Aligned_cols=132 Identities=11% Similarity=0.152 Sum_probs=76.5
Q ss_pred hCCCeEEEEccccccccccCCCC--cchHHHHHHHHHHHHHhCCCCCC-------CCCceEEEEEecCC-----------
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSL-------YEDKIIMILAATNH----------- 72 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~--~~~~~~~~~~~ll~~ld~~~~~~-------~~~~~v~viatTn~----------- 72 (202)
....+|+++||+|.+.+...... .......+.+.||+.+++-.... ....+.+++.|+|-
T Consensus 131 ~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~ 210 (364)
T d1um8a_ 131 KAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGL 210 (364)
T ss_dssp HHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTH
T ss_pred HhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhh
Confidence 34568999999999886542111 11123457889999999522110 01134566666664
Q ss_pred --------------------------------------CCCccHHHHhcccceeeecCCCHHHHHHHHHHH----hc---
Q psy3540 73 --------------------------------------PWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLC----LE--- 107 (202)
Q Consensus 73 --------------------------------------~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~----l~--- 107 (202)
+..+-|.++.||+..+.|...+.+.-..|+... ++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~ 290 (364)
T d1um8a_ 211 AEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQ 290 (364)
T ss_dssp HHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHH
T ss_pred hhhhhhhcccccccccccccchhhhhhhhccccHHHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 123667788899999999999999999998642 11
Q ss_pred ------CcccC-CcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHH
Q psy3540 108 ------GVVID-VNLDFHKISKML--EGYTGSDIANLARDAAMMSI 144 (202)
Q Consensus 108 ------~~~~~-~~~~~~~la~~t--~g~s~~dl~~l~~~A~~~a~ 144 (202)
++.+. .+--++.||... .+|=++-|+.++++......
T Consensus 291 ~~l~~~gi~L~~td~a~~~la~~g~d~~~GAR~L~riie~~l~~~~ 336 (364)
T d1um8a_ 291 QLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIM 336 (364)
T ss_dssp HHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCcEEEECHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHh
Confidence 12221 233356666643 56777778887776654443
No 30
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=93.96 E-value=0.76 Score=37.04 Aligned_cols=165 Identities=19% Similarity=0.224 Sum_probs=96.3
Q ss_pred CCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCC----CCceEEEEEecCC----CCCccHHHHhcccc
Q psy3540 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLY----EDKIIMILAATNH----PWDIDEAFRRRFEK 86 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~----~~~~v~viatTn~----~~~ld~al~rrf~~ 86 (202)
++.++|+||+|.+.......+.......+...++..+.+..-... +...+++|++... |..+=|.+.-||..
T Consensus 249 ~~~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliGRlPi 328 (443)
T d1g41a_ 249 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI 328 (443)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCE
T ss_pred ccCccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhccceEE
Confidence 356999999999998776544444444556677777666432210 1134556666533 44566889999999
Q ss_pred eeeecCCCHHHHHHHHHH----Hhc---------CcccC-CcccHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHH
Q psy3540 87 RVYIPLPNEWARYQLLTL----CLE---------GVVID-VNLDFHKISKML-------EGYTGSDIANLARDAAMMSIR 145 (202)
Q Consensus 87 ~i~i~~P~~~~R~~il~~----~l~---------~~~~~-~~~~~~~la~~t-------~g~s~~dl~~l~~~A~~~a~~ 145 (202)
.+.+...+.+.-..||.. +++ +..+. .+-.+..+|+.. +|.-++=|+.++.+....+..
T Consensus 329 ~v~L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~l~~~~f 408 (443)
T d1g41a_ 329 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISF 408 (443)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHH
T ss_pred EEEccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHHHHHHhc
Confidence 999999999988887742 111 11111 122344444443 344445555555555555544
Q ss_pred HHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhCCCCCHHHHHHHH
Q psy3540 146 RKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYD 193 (202)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~s~~~~~~~~ 193 (202)
+.-.. ......|+.+.+...+. |-+..+++.+|.
T Consensus 409 ~~p~~-----------~~~~v~Id~~~v~~~l~---~~~~~~dl~k~i 442 (443)
T d1g41a_ 409 SASDM-----------NGQTVNIDAAYVADALG---EVVENEDLSRFI 442 (443)
T ss_dssp HGGGC-----------TTCEEEECHHHHHHHHT---TTTTCHHHHHHH
T ss_pred cCCCC-----------CCCEEEECHHHHHhhhh---chhhcCCccccc
Confidence 32211 11234577777766664 445667777763
No 31
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=92.16 E-value=0.75 Score=33.26 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=64.6
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH---------HHHhcc
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE---------AFRRRF 84 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~---------al~rrf 84 (202)
..+.++++||++.+...... . +...+...++... ++..+.+......+.. .+..|+
T Consensus 135 ~~~~~i~id~~~~~~~~~~~----~----~~~~l~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (283)
T d2fnaa2 135 KDNVIIVLDEAQELVKLRGV----N----LLPALAYAYDNLK-------RIKFIMSGSEMGLLYDYLRVEDPESPLFGRA 199 (283)
T ss_dssp SSCEEEEEETGGGGGGCTTC----C----CHHHHHHHHHHCT-------TEEEEEEESSHHHHHHHTTTTCTTSTTTTCC
T ss_pred ccccccccchhhhhcccchH----H----HHHHHHHHHHhhh-------hhhhhhccccchHHHHHHHhhhhcchhcccc
Confidence 56889999999998653311 1 2233333333221 2333333322111111 111245
Q ss_pred cceeeecCCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 85 EKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 85 ~~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
...+.++..+.++..++++..+....+.. -++..+.+.|.|. |.-|..++..+
T Consensus 200 ~~~i~L~~l~~~e~~~~l~~~~~~~~~~~-~~~~~i~~~~~G~-P~~L~~~~~~~ 252 (283)
T d2fnaa2 200 FSTVELKPFSREEAIEFLRRGFQEADIDF-KDYEVVYEKIGGI-PGWLTYFGFIY 252 (283)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHTCCC-CCHHHHHHHHCSC-HHHHHHHHHHH
T ss_pred eeEEeeCCCCHHHHHHHHHhhhhhcCCCH-HHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 57788999999999999988886655543 3577899999997 66777665543
No 32
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=90.32 E-value=0.52 Score=34.78 Aligned_cols=114 Identities=21% Similarity=0.241 Sum_probs=53.9
Q ss_pred CeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhC-----CCCCCCCCceEEEEEecCCCC-------CccHHHHhc
Q psy3540 16 VSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDG-----LNSSLYEDKIIMILAATNHPW-------DIDEAFRRR 83 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~-----~~~~~~~~~~v~viatTn~~~-------~ld~al~rr 83 (202)
...|||||+|.+-.. .-..|+..++. +.+.......+-+|++|+.+- .+++.|..|
T Consensus 95 gGtL~l~~i~~L~~~------------~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~~~L~~~ 162 (247)
T d1ny5a2 95 GGTLFLDEIGELSLE------------AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYR 162 (247)
T ss_dssp TSEEEEESGGGCCHH------------HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHH
T ss_pred CCEEEEeChHhCCHH------------HHHHHHHHHHhCCEEECCCCCceecCeEEEEecCCCHHHHHHcCCCcHHHHhh
Confidence 358999999998321 12334444431 111100112456778777631 234444444
Q ss_pred ccceeeecCCCHHH----HHHHHHHHhcCcc----cC-CcccHHHHHHH-ccCCCH--HHHHHHHHHHHHH
Q psy3540 84 FEKRVYIPLPNEWA----RYQLLTLCLEGVV----ID-VNLDFHKISKM-LEGYTG--SDIANLARDAAMM 142 (202)
Q Consensus 84 f~~~i~i~~P~~~~----R~~il~~~l~~~~----~~-~~~~~~~la~~-t~g~s~--~dl~~l~~~A~~~ 142 (202)
+. .+.+.+|.-.+ -..|++.++.... .. ..++-..+... ...|.| .+|++++++|+..
T Consensus 163 l~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~WPGNl~EL~~~l~~a~~~ 232 (247)
T d1ny5a2 163 LG-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLF 232 (247)
T ss_dssp HT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred cC-eeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 32 23344555444 4455566664321 11 12232222222 223444 6888888877643
No 33
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Probab=89.24 E-value=0.93 Score=30.67 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=18.8
Q ss_pred HHHHHHHhhhCCCeEEEEcccccc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSL 27 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l 27 (202)
.+..+..+....|.++++||+...
T Consensus 88 ~~~~l~~~~~~~~~vlllDE~~~~ 111 (178)
T d1ye8a1 88 LERAYREAKKDRRKVIIIDEIGKM 111 (178)
T ss_dssp HHHHHHHHHHCTTCEEEECCCSTT
T ss_pred HHHHHHHHHhcCCCceeecCCCcc
Confidence 455677778899999999997543
No 34
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=83.77 E-value=0.69 Score=33.88 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=37.2
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEK 86 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~ 86 (202)
.+..+....|.|++|||.+.-+-. .....|+..+..+... .. =||.+|.+|+-++ -+|+
T Consensus 217 a~~~~l~~~~~llllDEp~~~Ld~-----------~~~~~l~~~l~~~~~~----~~-qviv~TH~~~~~~-----~~D~ 275 (292)
T g1f2t.1 217 AMSLYLAGEISLLILDEPTPYLDE-----------ERRRKLITIMERYLKK----IP-QVILVSHDEELKD-----AADH 275 (292)
T ss_dssp HHHHHHHSSCSEEEEESCSCTTCH-----------HHHHHHHHHHHHTGGG----SS-EEEEEESCGGGGG-----GCSE
T ss_pred HHhhhhcCCCCEEEEeCCcccCCH-----------HHHHHHHHHHHHHHhC----CC-EEEEEeecHHHHH-----hCCE
Confidence 345556678999999998865421 1233444444444432 11 3556688766554 3577
Q ss_pred eeeec
Q psy3540 87 RVYIP 91 (202)
Q Consensus 87 ~i~i~ 91 (202)
.+.+.
T Consensus 276 ii~l~ 280 (292)
T g1f2t.1 276 VIRIS 280 (292)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76664
No 35
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=82.67 E-value=0.68 Score=34.48 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=34.9
Q ss_pred hhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccceeeec
Q psy3540 12 NSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEKRVYIP 91 (202)
Q Consensus 12 ~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~~i~i~ 91 (202)
....|+|++|||.|.-+-. . ....++..|..+... .+ =||.||..|.-++ .+|..+.+.
T Consensus 299 ~~~~~~illiDEpe~~Lh~-------~----~~~~l~~~l~~~~~~----~~-QviitTHs~~~~~-----~~d~~~~v~ 357 (369)
T g1ii8.1 299 LAGEISLLILDEPTPYLDE-------E----RRRKLITIMERYLKK----IP-QVILVSHDEELKD-----AADHVIRIS 357 (369)
T ss_dssp HHSSCSEEEEECCSSSSCS-------H----HHHHHHHHHHHTGGG----SS-EEEEEESCGGGGG-----TSSEEEEEE
T ss_pred cCCCCCEEEEECCCCCCCH-------H----HHHHHHHHHHHHHhc----CC-EEEEEechHHHHH-----hCCEEEEEE
Confidence 3457889999999875431 1 233444444444332 11 2455788776544 457777665
Q ss_pred CC
Q psy3540 92 LP 93 (202)
Q Consensus 92 ~P 93 (202)
.-
T Consensus 358 ~~ 359 (369)
T g1ii8.1 358 LE 359 (369)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 36
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=75.00 E-value=7.6 Score=24.49 Aligned_cols=86 Identities=12% Similarity=-0.008 Sum_probs=41.6
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcc
Q psy3540 5 QRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRF 84 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf 84 (202)
.+.++.++...|.+|++|- -.+. .++ -+++..+...... ..-+|+++.+....+....++. .
T Consensus 35 ~~al~~~~~~~~dlil~D~---~mp~-----~dG------~el~~~ir~~~~~--~~iPii~lt~~~~~~~~~~~~~--~ 96 (123)
T d1mb3a_ 35 LSALSIARENKPDLILMDI---QLPE-----ISG------LEVTKWLKEDDDL--AHIPVVAVTAFAMKGDEERIRE--G 96 (123)
T ss_dssp HHHHHHHHHHCCSEEEEES---BCSS-----SBH------HHHHHHHHHSTTT--TTSCEEEEC------CHHHHHH--H
T ss_pred HHHHHHHHhCCCCEEEEEe---ccCC-----CcH------HHHHHHHHhCCCc--CCCCeEEEEEecCHHHHHHHHH--c
Confidence 4667777888999999883 1231 122 2344455443322 1123444433333333323322 2
Q ss_pred cceeeecCC-CHHHHHHHHHHHhcC
Q psy3540 85 EKRVYIPLP-NEWARYQLLTLCLEG 108 (202)
Q Consensus 85 ~~~i~i~~P-~~~~R~~il~~~l~~ 108 (202)
+..-++..| +..+-...++.++++
T Consensus 97 G~~~~l~KP~~~~~L~~~i~~~l~r 121 (123)
T d1mb3a_ 97 GCEAYISKPISVVHFLETIKRLLER 121 (123)
T ss_dssp TCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred CCCEEEECCCCHHHHHHHHHHHHhC
Confidence 333355666 667767777777654
No 37
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=73.43 E-value=1.4 Score=34.10 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=14.1
Q ss_pred HHHhhhCCCeEEEEcccccccc
Q psy3540 8 NVPSNSYRVSTIFIDEVDSLCS 29 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~l~~ 29 (202)
+.......+.|++|||+|+-+.
T Consensus 347 lal~~~~~~pililDE~d~~Ld 368 (427)
T d1w1wa_ 347 FAINSYQPSPFFVLDEVDAALD 368 (427)
T ss_dssp HHHHTSSCCSEEEESSTTTTCC
T ss_pred HHHhcCCCCCEEEEeCCCCCCC
Confidence 3333334445999999998653
No 38
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}
Probab=70.53 E-value=3.5 Score=30.31 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=29.4
Q ss_pred hhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 11 SNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 11 A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
.....|.+++|||+|.-+- ....+.+..++..+ ... . =||.||.+|..++.
T Consensus 237 ~~~~~~~~~~iDEpe~~Lh--------p~~~~~l~~~l~~~---~~~----~--QviitTHsp~~~~~ 287 (308)
T d1e69a_ 237 MEIKPSPFYVLDEVDSPLD--------DYNAERFKRLLKEN---SKH----T--QFIVITHNKIVMEA 287 (308)
T ss_dssp TTTSCCSEEEEESCCSSCC--------HHHHHHHHHHHHHH---TTT----S--EEEEECCCTTGGGG
T ss_pred hhhccCchhhhhhccccCC--------HHHHHHHHHHHHHh---ccC----C--EEEEEECCHHHHHh
Confidence 3456789999999987442 11222233333333 222 1 35568999988763
No 39
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=68.76 E-value=5.2 Score=28.86 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=34.3
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCcc
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld 77 (202)
+.+..+++.|. ..++++|||+=. +. +......+...++..+.... +..+|.||...+...
T Consensus 109 ~~~~~il~~~~--~~sLvliDE~~~-----gT--~~~eg~~l~~a~l~~l~~~~-------~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 109 TETANILHNAT--EYSLVLMDEIGR-----GT--STYDGLSLAWACAENLANKI-------KALTLFATHYFELTQ 168 (234)
T ss_dssp HHHHHHHHHCC--TTEEEEEESCCC-----CS--SSSHHHHHHHHHHHHHHHTT-------CCEEEEECSCGGGGG
T ss_pred HHHHHHHHhcc--cccEEeeccccc-----CC--ChhhhhHHHHHhhhhhhccc-------cceEEEecchHHHhh
Confidence 56777888776 468999999722 11 12222344555555543322 236777887765444
No 40
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.52 E-value=8.3 Score=28.05 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=35.6
Q ss_pred HHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEK 86 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf~~ 86 (202)
.++.|-...|.|+++||.=+-+ +. .....+.+.+..+... .+..+|..|.+++ +.+.+|+
T Consensus 161 aiARal~~~p~ililDEpTs~L-------D~----~~~~~i~~~l~~l~~~----~~~Tvi~itH~l~-----~~~~aDr 220 (251)
T d1jj7a_ 161 ALARALIRKPCVLILDDATSAL-------DA----NSQLQVEQLLYESPER----YSRSVLLITQHLS-----LVEQADH 220 (251)
T ss_dssp HHHHHHTTCCSEEEEESTTTTC-------CH----HHHHHHHHHHHTCGGG----GGCEEEEECSCHH-----HHHTCSE
T ss_pred EEeeccccCCcEEEecCcCccc-------Ch----hhHHHHHHHHHHHhhh----cCCEEEEEeCCHH-----HHHhCCE
Confidence 4555666789999999953221 11 1233445555555432 2345666776532 3345677
Q ss_pred eeee
Q psy3540 87 RVYI 90 (202)
Q Consensus 87 ~i~i 90 (202)
++.+
T Consensus 221 I~vl 224 (251)
T d1jj7a_ 221 ILFL 224 (251)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 41
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=65.23 E-value=5.3 Score=28.87 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=13.8
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
..+.|-...|.||++||-
T Consensus 155 aIAraL~~~P~lLllDEP 172 (230)
T d1l2ta_ 155 AIARALANNPPIILADQP 172 (230)
T ss_dssp HHHHHHTTCCSEEEEEST
T ss_pred HHHhhhhcCCCEEEecCC
Confidence 345556688999999994
No 42
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=62.91 E-value=3.6 Score=23.51 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=26.4
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHh
Q psy3540 117 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 117 ~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 180 (202)
+..+++.++- -|..++..|...+..... ..|+.+|+..|++++
T Consensus 26 ~~~l~~~~e~----fi~~l~~~a~~~a~~~kR-----------------kTi~~~DV~~Alk~~ 68 (68)
T d1htaa_ 26 RIALAKVLEE----MGEEIASEAVKLAKHAGR-----------------KTIKAEDIELARKMF 68 (68)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHTTC-----------------SSCCHHHHHHHHHTC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHhCC-----------------CcCCHHHHHHHHHhC
Confidence 4445554442 245666666655554322 379999999999863
No 43
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
Probab=61.46 E-value=6.7 Score=28.30 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=15.5
Q ss_pred HHHHhhhCCCeEEEEcccccccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLCSMR 31 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~~~r 31 (202)
+-...+.+.|.+|+||-+..+.+..
T Consensus 139 ~~~~~~~~~~~~vvID~l~~l~~~~ 163 (277)
T d1cr2a_ 139 LAYMRSGLGCDVIILDHISIVVSAS 163 (277)
T ss_dssp HHHHHHTTCCSEEEEEEEEC-----
T ss_pred hhhhhhccCcceEEEcccccccccc
Confidence 3344566789999999998876544
No 44
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=59.94 E-value=8.6 Score=27.43 Aligned_cols=55 Identities=16% Similarity=0.095 Sum_probs=31.9
Q ss_pred hHHHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC
Q psy3540 2 REVQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP 73 (202)
Q Consensus 2 k~i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~ 73 (202)
+.++.++..+. ..++++|||+=. +.+......+...++..+.... ..++.||...
T Consensus 103 ~~~~~il~~~~--~~sLvliDE~~~-------gT~~~eg~ala~aile~L~~~~--------~~~i~tTH~~ 157 (224)
T d1ewqa2 103 EEVALILKEAT--ENSLVLLDEVGR-------GTSSLDGVAIATAVAEALHERR--------AYTLFATHYF 157 (224)
T ss_dssp HHHHHHHHHCC--TTEEEEEESTTT-------TSCHHHHHHHHHHHHHHHHHHT--------CEEEEECCCH
T ss_pred HHHHHHhccCC--CCcEEeeccccc-------CcchhhhcchHHHHHHHHhhcC--------cceEEeeech
Confidence 56777777664 468999999722 1222333445556666654422 2456677764
No 45
>d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=56.75 E-value=17 Score=21.74 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHH-------HHHHHHHHHHhcCChhHHhhhhhccC
Q psy3540 92 LPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARD-------AAMMSIRRKIMGQTPAQIKEIKQEDI 164 (202)
Q Consensus 92 ~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~-------A~~~a~~~~~~~~~~~~~~~~~~~~~ 164 (202)
+|........|....++++ .+|..||... ||+..+|..+-.+ .++..+..=... .
T Consensus 3 ~p~~~~l~~~f~~ia~~lg----~~Wk~Lar~L-gls~~~I~~I~~~~~~~~~e~~~~mL~~W~~~---------~---- 64 (95)
T d1fada_ 3 PPGEAYLQVAFDIVCDNVG----RDWKRLAREL-KVSEAKMDGIEEKYPRSLSERVRESLKVWKNA---------E---- 64 (95)
T ss_dssp CTTHHHHHHHHHHHHHHHH----HHHHHHHHHT-TCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHH---------H----
T ss_pred CccHhhHHHHHHHHHHHHH----HhHHHHHHHc-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---------h----
Confidence 4677777777777666553 4899999766 8999999987543 112222111100 0
Q ss_pred CCCCcHHHHHHHHHHhCCC
Q psy3540 165 DLPVTEKDFREAIARCRKS 183 (202)
Q Consensus 165 ~~~it~~df~~Al~~~~Ps 183 (202)
...-|.+.+..||..+.-.
T Consensus 65 g~~at~~~L~~aL~~~~~~ 83 (95)
T d1fada_ 65 KKNASVAGLVKALRTCRLN 83 (95)
T ss_dssp GGGGSHHHHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHHHHcCcH
Confidence 0134788999999988654
No 46
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=55.34 E-value=1.7 Score=31.60 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=13.4
Q ss_pred HHHHhhhCCCeEEEEcc
Q psy3540 7 TNVPSNSYRVSTIFIDE 23 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDe 23 (202)
.+..|-...|.||++||
T Consensus 137 aiAraL~~~P~iLllDE 153 (229)
T d3d31a2 137 ALARALVTNPKILLLDE 153 (229)
T ss_dssp HHHHHTTSCCSEEEEES
T ss_pred hhhhhhhccCCceeecC
Confidence 44556667899999999
No 47
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=51.36 E-value=4 Score=29.74 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=14.5
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
..+.|-...|.||++||-
T Consensus 149 ~IAraL~~~P~iLllDEP 166 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEP 166 (240)
T ss_dssp HHHHHHHTCCSEEEEECT
T ss_pred HHHHHHhcCCCEEEecCC
Confidence 456666789999999994
No 48
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=49.53 E-value=8.6 Score=26.61 Aligned_cols=46 Identities=26% Similarity=0.378 Sum_probs=25.4
Q ss_pred eEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccH
Q psy3540 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78 (202)
Q Consensus 17 ~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~ 78 (202)
..+++||+|.++... ....+-..++.+... ..++++.|| -|..+..
T Consensus 145 ~~lV~DEaD~l~~~~-----------f~~~v~~I~~~l~~~----~Q~il~SAT-l~~~v~~ 190 (206)
T d1s2ma1 145 SLFIMDEADKMLSRD-----------FKTIIEQILSFLPPT----HQSLLFSAT-FPLTVKE 190 (206)
T ss_dssp CEEEEESHHHHSSHH-----------HHHHHHHHHTTSCSS----CEEEEEESC-CCHHHHH
T ss_pred eEEEeechhhhhhhh-----------hHHHHHHHHHhCCCC----CEEEEEEEe-CCHHHHH
Confidence 468899999997421 233444445555442 344444444 4555554
No 49
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=49.03 E-value=8.2 Score=28.09 Aligned_cols=17 Identities=18% Similarity=0.014 Sum_probs=13.4
Q ss_pred HHHHhhhCCCeEEEEcc
Q psy3540 7 TNVPSNSYRVSTIFIDE 23 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDe 23 (202)
.+..|-...|.||++||
T Consensus 160 ~iAraL~~~P~llilDE 176 (254)
T d1g6ha_ 160 EIGRALMTNPKMIVMDE 176 (254)
T ss_dssp HHHHHHHTCCSEEEEES
T ss_pred HHHHHHHhCcCchhhcC
Confidence 34556667999999999
No 50
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=48.62 E-value=2.9 Score=30.55 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=14.1
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
....|-...|.||++||-
T Consensus 146 aiAraL~~~P~iLllDEP 163 (239)
T d1v43a3 146 AVARAIVVEPDVLLMDEP 163 (239)
T ss_dssp HHHHHHTTCCSEEEEEST
T ss_pred HHHhhhccCCCceeecCC
Confidence 455666789999999993
No 51
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=48.27 E-value=25 Score=21.72 Aligned_cols=82 Identities=13% Similarity=0.054 Sum_probs=40.9
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcc
Q psy3540 5 QRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRF 84 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf 84 (202)
.+.++.++...|.++++| .-.+.. ++ -+++..+...... -+|+++.+...++....++ ..
T Consensus 35 ~eal~~~~~~~~dlillD---~~mP~~-----~G------~el~~~lr~~~~~----~pvi~lt~~~~~~~~~~a~--~~ 94 (119)
T d1peya_ 35 LQALDIVTKERPDLVLLD---MKIPGM-----DG------IEILKRMKVIDEN----IRVIIMTAYGELDMIQESK--EL 94 (119)
T ss_dssp HHHHHHHHHHCCSEEEEE---SCCTTC-----CH------HHHHHHHHHHCTT----CEEEEEESSCCHHHHHHHH--HT
T ss_pred HHHHHHHHhCCCCEEEEe---ccCCCC-----CH------HHHHHHHHHhCCC----CcEEEEecCCCHHHHHHHH--HC
Confidence 456677778899999987 223321 22 1344444333322 4455544444433333333 33
Q ss_pred cceeeecCC-CHHHHHHHHHHHh
Q psy3540 85 EKRVYIPLP-NEWARYQLLTLCL 106 (202)
Q Consensus 85 ~~~i~i~~P-~~~~R~~il~~~l 106 (202)
+-.=++..| +.++-...++.++
T Consensus 95 Ga~~yl~KP~~~~~L~~~v~~~L 117 (119)
T d1peya_ 95 GALTHFAKPFDIDEIRDAVKKYL 117 (119)
T ss_dssp TCCEEEESSCCHHHHHHHHHHHS
T ss_pred CCCEEEECCCCHHHHHHHHHHHC
Confidence 333355555 5555555555544
No 52
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}
Probab=46.54 E-value=29 Score=24.75 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=14.7
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
....|-...|.|+++||.=+
T Consensus 149 alARal~~~p~ililDEpts 168 (241)
T d2pmka1 149 AIARALVNNPKILIFDEATS 168 (241)
T ss_dssp HHHHHHTTCCSEEEECCCCS
T ss_pred hhhhhhhcccchhhhhCCcc
Confidence 44555667899999999633
No 53
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=46.02 E-value=30 Score=21.57 Aligned_cols=86 Identities=13% Similarity=0.003 Sum_probs=42.9
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhcc
Q psy3540 5 QRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRF 84 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rrf 84 (202)
.+.++.++...|.+|++|= -.+.- ++ -+++..+...... +.-+|+++.+-+..+....++ ..
T Consensus 39 ~~a~~~~~~~~~dlii~D~---~mP~~-----dG------~el~~~ir~~~~~--~~~piI~lt~~~~~~~~~~a~--~~ 100 (128)
T d1jbea_ 39 VDALNKLQAGGYGFVISDW---NMPNM-----DG------LELLKTIRADGAM--SALPVLMVTAEAKKENIIAAA--QA 100 (128)
T ss_dssp HHHHHHHTTCCCCEEEEES---CCSSS-----CH------HHHHHHHHC--CC--TTCCEEEEESSCCHHHHHHHH--HT
T ss_pred hHHHHHHhcCCCCEEEEec---ccccC-----CH------HHHHHHHHhCccC--CCCcEEEEECcCCHHHHHHHH--HC
Confidence 4566777888999999863 22321 11 2455555443332 123344443333333333333 33
Q ss_pred cceeeecCC-CHHHHHHHHHHHhcC
Q psy3540 85 EKRVYIPLP-NEWARYQLLTLCLEG 108 (202)
Q Consensus 85 ~~~i~i~~P-~~~~R~~il~~~l~~ 108 (202)
+-.-++..| +..+-..-++..+++
T Consensus 101 G~~~~l~KP~~~~~L~~~l~~~l~r 125 (128)
T d1jbea_ 101 GASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp TCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHH
Confidence 444455556 666666666665543
No 54
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.47 E-value=9.5 Score=26.49 Aligned_cols=14 Identities=50% Similarity=0.662 Sum_probs=11.7
Q ss_pred CeEEEEcccccccc
Q psy3540 16 VSTIFIDEVDSLCS 29 (202)
Q Consensus 16 P~Ii~iDeiD~l~~ 29 (202)
-..+++||+|.++.
T Consensus 147 l~~lVlDEaD~ll~ 160 (206)
T d1veca_ 147 VQMIVLDEADKLLS 160 (206)
T ss_dssp CCEEEEETHHHHTS
T ss_pred cceEEEeccccccc
Confidence 34799999999985
No 55
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=42.83 E-value=3.3 Score=30.09 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=13.5
Q ss_pred HHHhhhCCCeEEEEccc
Q psy3540 8 NVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDei 24 (202)
...|-...|.||++||-
T Consensus 141 iAraL~~~P~illlDEP 157 (232)
T d2awna2 141 IGRTLVAEPSVFLLDEP 157 (232)
T ss_dssp HHHHHHTCCSEEEEEST
T ss_pred HHHHHhcCCCEEEEcCC
Confidence 45566789999999993
No 56
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=42.69 E-value=9.1 Score=22.15 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHH
Q psy3540 130 SDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA 178 (202)
Q Consensus 130 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~ 178 (202)
--|+.++++|......... ..+|.+|+..||+
T Consensus 38 YRl~eiiQeA~KFMrhskR-----------------~~Ltt~Did~ALk 69 (70)
T d1tafb_ 38 IKLKRIVQDAAKFMNHAKR-----------------QKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTC-----------------SSBCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcc-----------------CcCcHHHHHHHHc
Confidence 3466777777655543322 2799999999985
No 57
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}
Probab=41.99 E-value=38 Score=23.19 Aligned_cols=17 Identities=6% Similarity=0.014 Sum_probs=12.9
Q ss_pred HHHhhhCCCeEEEEccc
Q psy3540 8 NVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDei 24 (202)
+..|-...|.|+++||-
T Consensus 136 ia~al~~~~~llllDEP 152 (200)
T d1sgwa_ 136 LASTLLVNAEIYVLDDP 152 (200)
T ss_dssp HHHHTTSCCSEEEEEST
T ss_pred HHHHHhcCCCEEEEcCc
Confidence 44555678999999994
No 58
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=41.49 E-value=10 Score=23.94 Aligned_cols=13 Identities=31% Similarity=0.302 Sum_probs=10.6
Q ss_pred CCeEEEEcccccc
Q psy3540 15 RVSTIFIDEVDSL 27 (202)
Q Consensus 15 ~P~Ii~iDeiD~l 27 (202)
.-.+|++||++.+
T Consensus 94 ~~~~vIiDE~H~~ 106 (136)
T d1a1va1 94 AYDIIICDECHST 106 (136)
T ss_dssp CCSEEEEETTTCC
T ss_pred cCCEEEEeccccc
Confidence 4578999999875
No 59
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=40.80 E-value=32 Score=24.66 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=13.6
Q ss_pred HHHhhhCCCeEEEEccccc
Q psy3540 8 NVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 8 F~~A~~~~P~Ii~iDeiD~ 26 (202)
.+.|-...|.|+++||.-+
T Consensus 163 iARal~~~p~ililDEpts 181 (253)
T d3b60a1 163 IARALLRDSPILILDEATS 181 (253)
T ss_dssp HHHHHHHCCSEEEEETTTS
T ss_pred HHHHHhcCCCEEEeccccc
Confidence 4445556899999999633
No 60
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=40.67 E-value=2.3 Score=31.16 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=13.9
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
....|-...|.||++||-
T Consensus 150 aiARaL~~~P~llllDEP 167 (242)
T d1oxxk2 150 ALARALVKDPSLLLLDEP 167 (242)
T ss_dssp HHHHHHTTCCSEEEEEST
T ss_pred HHHhHHhhcccceeecCC
Confidence 445556679999999994
No 61
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.45 E-value=13 Score=26.22 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=11.3
Q ss_pred eEEEEcccccccc
Q psy3540 17 STIFIDEVDSLCS 29 (202)
Q Consensus 17 ~Ii~iDeiD~l~~ 29 (202)
..+++||+|.++.
T Consensus 161 ~~lVlDEaD~ll~ 173 (222)
T d2j0sa1 161 KMLVLDEADEMLN 173 (222)
T ss_dssp CEEEEETHHHHTS
T ss_pred eeeeecchhHhhh
Confidence 4789999999985
No 62
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=40.26 E-value=12 Score=27.18 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=14.5
Q ss_pred HHHHhhhCCCeEEEEccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDS 26 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~ 26 (202)
.++.|-...|.|+++||.-+
T Consensus 164 ~iARal~~~p~ililDEpts 183 (255)
T d2hyda1 164 SIARIFLNNPPILILDEATS 183 (255)
T ss_dssp HHHHHHHHCCSEEEEESTTT
T ss_pred HHHHHHhcCCCEEEEeCccc
Confidence 44455556899999999644
No 63
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=39.58 E-value=2 Score=31.52 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=14.3
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|.||++||-
T Consensus 136 aiAral~~~P~illlDEP 153 (240)
T d2onka1 136 ALARALVIQPRLLLLDEP 153 (240)
T ss_dssp HHHHHHTTCCSSBEEEST
T ss_pred HHHHHHhccCCceEecCc
Confidence 455666789999999993
No 64
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=39.20 E-value=34 Score=20.20 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=13.8
Q ss_pred CCcHHHHHHHHHHhC
Q psy3540 167 PVTEKDFREAIARCR 181 (202)
Q Consensus 167 ~it~~df~~Al~~~~ 181 (202)
.|+.+|+..|++...
T Consensus 53 tI~~~dv~~Al~~~~ 67 (89)
T d2bykb1 53 TITAKDILQTLTELD 67 (89)
T ss_dssp SCCHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHCC
Confidence 799999999999876
No 65
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=38.45 E-value=12 Score=25.91 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=11.1
Q ss_pred eEEEEcccccccc
Q psy3540 17 STIFIDEVDSLCS 29 (202)
Q Consensus 17 ~Ii~iDeiD~l~~ 29 (202)
+.+++||+|.++.
T Consensus 147 ~~lViDEad~l~~ 159 (208)
T d1hv8a1 147 KYFILDEADEMLN 159 (208)
T ss_dssp CEEEEETHHHHHT
T ss_pred cEEEEEChHHhhc
Confidence 4899999999875
No 66
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}
Probab=38.32 E-value=38 Score=24.28 Aligned_cols=62 Identities=11% Similarity=-0.000 Sum_probs=35.1
Q ss_pred EEEEecCCCCCccHHHHhcccceeeecCCCHHHHHHHHHHHhcCcccCCc-cc-HHHHHHHccCCC
Q psy3540 65 MILAATNHPWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVN-LD-FHKISKMLEGYT 128 (202)
Q Consensus 65 ~viatTn~~~~ld~al~rrf~~~i~i~~P~~~~R~~il~~~l~~~~~~~~-~~-~~~la~~t~g~s 128 (202)
-||.||+...-... +... ...+.++..+.++-.++|..+....+..+. .+ ...+++.|.|.-
T Consensus 159 rilvTTR~~~v~~~-~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlP 222 (277)
T d2a5yb3 159 RCLVTTRDVEISNA-ASQT-CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 222 (277)
T ss_dssp EEEEEESBGGGGGG-CCSC-EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred eEEEEeehHHHHHh-cCCC-CceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCH
Confidence 35667775432221 1111 135778888999999999776544332221 12 367888888764
No 67
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.64 E-value=20 Score=20.51 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=23.3
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHH
Q psy3540 167 PVTEKDFREAIARCRKSVTAHDLSKY 192 (202)
Q Consensus 167 ~it~~df~~Al~~~~Ps~s~~~~~~~ 192 (202)
.|+.++|..+|..+.+..+.+++..+
T Consensus 36 ~i~~~ef~~~l~~~~~~l~~~e~~~l 61 (83)
T d1wlza1 36 TISREEFRAICNRRVQILTDEQFDRL 61 (83)
T ss_dssp CBCHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred eEChhHHHHHHHHhCCCCChhHHHHH
Confidence 79999999999999999999888755
No 68
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=36.07 E-value=10 Score=27.45 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=14.2
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
....|-...|.||++||-
T Consensus 150 aiAraL~~~P~lLllDEP 167 (240)
T d3dhwc1 150 AIARALASNPKVLLCDEA 167 (240)
T ss_dssp HHHHHHHTCCSEEEEESG
T ss_pred HHhhhhccCCCeEEeccc
Confidence 455666789999999993
No 69
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.74 E-value=11 Score=26.50 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=12.3
Q ss_pred CeEEEEccccccccc
Q psy3540 16 VSTIFIDEVDSLCSM 30 (202)
Q Consensus 16 P~Ii~iDeiD~l~~~ 30 (202)
-..+++||+|.++..
T Consensus 156 l~~lVlDEaD~ll~~ 170 (218)
T d2g9na1 156 IKMFVLDEADEMLSR 170 (218)
T ss_dssp CCEEEEESHHHHHHT
T ss_pred ceEEEeeecchhhcC
Confidence 458999999999853
No 70
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=35.59 E-value=10 Score=26.61 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=12.2
Q ss_pred CCeEEEEcccccccc
Q psy3540 15 RVSTIFIDEVDSLCS 29 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~ 29 (202)
.-..|++||+|.++.
T Consensus 162 ~~~~vVvDE~d~~l~ 176 (237)
T d1gkub1 162 HFDFIFVDDVDAILK 176 (237)
T ss_dssp CCSEEEESCHHHHHT
T ss_pred CCCEEEEEChhhhhh
Confidence 346899999999874
No 71
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}
Probab=35.50 E-value=43 Score=21.92 Aligned_cols=43 Identities=9% Similarity=0.228 Sum_probs=32.6
Q ss_pred ceEEEEEecCCCCCccHHHHhcccceeeecC---CCHHHHHHHHHHHhc
Q psy3540 62 KIIMILAATNHPWDIDEAFRRRFEKRVYIPL---PNEWARYQLLTLCLE 107 (202)
Q Consensus 62 ~~v~viatTn~~~~ld~al~rrf~~~i~i~~---P~~~~R~~il~~~l~ 107 (202)
.-++|||- |+-+++.++.|.+..+.+.. |-.-.|.-+++..-+
T Consensus 102 ~i~FiIGG---a~G~~~~~~~~a~~~lSls~mT~pH~larv~l~EQlYR 147 (157)
T d1vh0a_ 102 DFVFVIGG---SNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYR 147 (157)
T ss_dssp EEEEEECB---TTBCCHHHHHHCSEEECSCSSCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEcC---CCccCHHHHhhcCCEEECccCCchhHHHHHHHHHHHHH
Confidence 45788887 57789999999999998865 556677777666543
No 72
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=35.11 E-value=54 Score=21.36 Aligned_cols=43 Identities=12% Similarity=0.352 Sum_probs=32.4
Q ss_pred ceEEEEEecCCCCCccHHHHhcccceeeecC---CCHHHHHHHHHHHhc
Q psy3540 62 KIIMILAATNHPWDIDEAFRRRFEKRVYIPL---PNEWARYQLLTLCLE 107 (202)
Q Consensus 62 ~~v~viatTn~~~~ld~al~rrf~~~i~i~~---P~~~~R~~il~~~l~ 107 (202)
.-+++||- |+-+++.++.|.+..+.+.. |-.-.|.-+++..-+
T Consensus 102 ~i~FiIGG---a~G~~~~~~~~a~~~~Sls~mT~pH~l~r~~l~EQiYR 147 (157)
T d1to0a_ 102 KVTFVIGG---SLGLSDTVMKRADEKLSFSKMTFPHQLMRLILVEQIYR 147 (157)
T ss_dssp EEEEEECC---SSCCCHHHHHHCSEEEESCSSCCCHHHHHHHHHHHHHH
T ss_pred ceEEEECC---CCCCCHHHHhhcCcEEecccCCchHHHHHHHHHHHHHH
Confidence 45688887 66788999999999998865 556677777666554
No 73
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=33.10 E-value=53 Score=20.59 Aligned_cols=84 Identities=14% Similarity=0.068 Sum_probs=47.1
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRR 83 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rr 83 (202)
-.+.++.++...|.++++|= -.+. .++ -+++..+..... ..+++++.++..++.+..++.
T Consensus 37 ~~~al~~~~~~~~DlvllD~---~mP~-----~~G------~el~~~ir~~~~----~~~vivlt~~~~~~~~~~a~~-- 96 (138)
T d1a04a2 37 GEQGIELAESLDPDLILLDL---NMPG-----MNG------LETLDKLREKSL----SGRIVVFSVSNHEEDVVTALK-- 96 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEET---TSTT-----SCH------HHHHHHHHHSCC----CSEEEEEECCCCHHHHHHHHH--
T ss_pred HHHHHHHHHhcCCCEEEEec---CCCC-----CCH------HHHHHHHHhhCC----CCCEEEEEEECCHHHHHHHHH--
Confidence 35667778888999999873 1221 122 234444443332 256777766665555544443
Q ss_pred ccceeeecCC-CHHHHHHHHHHHhc
Q psy3540 84 FEKRVYIPLP-NEWARYQLLTLCLE 107 (202)
Q Consensus 84 f~~~i~i~~P-~~~~R~~il~~~l~ 107 (202)
.+-.=++..| +.++-..-++..+.
T Consensus 97 ~Ga~~yl~Kp~~~~~L~~~i~~v~~ 121 (138)
T d1a04a2 97 RGADGYLLKDMEPEDLLKALHQAAA 121 (138)
T ss_dssp TTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCHHHHHHHHHHHHC
Confidence 3444456666 55565566666554
No 74
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=32.92 E-value=34 Score=22.25 Aligned_cols=43 Identities=9% Similarity=0.257 Sum_probs=32.8
Q ss_pred ceEEEEEecCCCCCccHHHHhcccceeeecC---CCHHHHHHHHHHHhc
Q psy3540 62 KIIMILAATNHPWDIDEAFRRRFEKRVYIPL---PNEWARYQLLTLCLE 107 (202)
Q Consensus 62 ~~v~viatTn~~~~ld~al~rrf~~~i~i~~---P~~~~R~~il~~~l~ 107 (202)
+-++|||- |+-+++.++.|.+..+.+.. |-.-.|.-+++..-+
T Consensus 94 ~i~FiIGG---a~Gl~~~~~~~a~~~lSls~mT~pH~l~rv~l~EQlYR 139 (147)
T d1o6da_ 94 DITILIGG---PYGLNEEIFAKAHRVFSLSKMTFTHGMTVLIVLEQIFR 139 (147)
T ss_dssp CEEEEECC---TTCCCGGGGGGCSEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEC---CCCCCHHHHHhcCcEEeCCcCcchHHHHHHHHHHHHHH
Confidence 45788885 67789999999999998865 666677777766554
No 75
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.24 E-value=34 Score=20.23 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHhcCcccCCcccHHHHHHH--ccCCCHHHHHHHHHHH
Q psy3540 93 PNEWARYQLLTLCLEGVVIDVNLDFHKISKM--LEGYTGSDIANLARDA 139 (202)
Q Consensus 93 P~~~~R~~il~~~l~~~~~~~~~~~~~la~~--t~g~s~~dl~~l~~~A 139 (202)
|..+.-.+|+..++.+- +. .-+..+-.. ..||++.||-.-..+.
T Consensus 1 P~P~~I~~il~~~l~~~-f~--~a~~~l~~l~~~~G~s~~dIl~~l~~~ 46 (95)
T d1sxjc1 1 PRPSDLKAVLKSILEDD-WG--TAHYTLNKVRSAKGLALIDLIEGIVKI 46 (95)
T ss_dssp CCHHHHHHHHHHHHTSC-HH--HHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC-HH--HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 67778889999998642 21 123334332 3599999986655443
No 76
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=31.98 E-value=36 Score=24.65 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=34.5
Q ss_pred hCCCeEEEEccccccccccCCCC-----cchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCC
Q psy3540 13 SYRVSTIFIDEVDSLCSMRGSDS-----EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP 73 (202)
Q Consensus 13 ~~~P~Ii~iDeiD~l~~~r~~~~-----~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~ 73 (202)
...+.+|++|-+-++++...-.+ ..+...++++.++..+-.+... .++.+|.+..-.
T Consensus 133 ~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~----~~~~vi~tNQv~ 194 (268)
T d1xp8a1 133 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSK----TGTAAIFINQVR 194 (268)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTT----TCCEEEEEEEC-
T ss_pred cCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhh----cCCeEEEEeEEe
Confidence 45689999999999986543211 1123456667777666666554 456666664443
No 77
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=31.94 E-value=16 Score=24.28 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=31.6
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHhCCC
Q psy3540 117 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 183 (202)
Q Consensus 117 ~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 183 (202)
+..++..++-| +..++..|...|..... ..|+.+|+..|+....|.
T Consensus 102 ~~~l~~~~E~f----i~~l~~~A~~~a~~~kR-----------------kTI~~~DI~~Av~~~~~~ 147 (151)
T d1f1ea_ 102 VDLYNKLICRA----TEELGEKAAEYADEDGR-----------------KTVQGEDVEKAITYSMPK 147 (151)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHhCC-----------------CcCCHHHHHHHHHHcCCC
Confidence 55556555533 45667777777665433 279999999999998873
No 78
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=31.78 E-value=11 Score=21.19 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=10.6
Q ss_pred CCcHHHHHHHHH
Q psy3540 167 PVTEKDFREAIA 178 (202)
Q Consensus 167 ~it~~df~~Al~ 178 (202)
.|+.+|+..|++
T Consensus 54 TI~~~Dv~~Al~ 65 (66)
T d1ku5a_ 54 TVKVEDIKLAIK 65 (66)
T ss_dssp EECHHHHHHHHT
T ss_pred CCCHHHHHHHHh
Confidence 799999999985
No 79
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.11 E-value=43 Score=18.94 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=22.8
Q ss_pred CCcccHHHHHHHccCCCHHHHHHHHHH
Q psy3540 112 DVNLDFHKISKMLEGYTGSDIANLARD 138 (202)
Q Consensus 112 ~~~~~~~~la~~t~g~s~~dl~~l~~~ 138 (202)
...+.+.+|+++..|++..+|++.+..
T Consensus 21 ~eGi~~~el~~~l~~~~~~~i~~aid~ 47 (69)
T d1dpua_ 21 PEGLNFQDLKNQLKHMSVSSIKQAVDF 47 (69)
T ss_dssp TTTEEHHHHHHHSTTSCHHHHHHHHHH
T ss_pred ccCcCHHHHHHHccCCCHHHHHHHHHH
Confidence 456899999999999999999887664
No 80
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}
Probab=30.42 E-value=22 Score=25.44 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=13.6
Q ss_pred HHHHhhhCCCeEEEEcc
Q psy3540 7 TNVPSNSYRVSTIFIDE 23 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDe 23 (202)
.+..|-...|.||++||
T Consensus 149 ~iAraL~~~P~lLllDE 165 (240)
T d1ji0a_ 149 AIGRALMSRPKLLMMDE 165 (240)
T ss_dssp HHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHhCCCEeeecC
Confidence 34556678999999999
No 81
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}
Probab=30.09 E-value=30 Score=24.60 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=13.9
Q ss_pred HHHHhhhCCCeEEEEccc
Q psy3540 7 TNVPSNSYRVSTIFIDEV 24 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDei 24 (202)
.+..|-...|-||++||-
T Consensus 143 ~iA~al~~~p~illLDEP 160 (238)
T d1vpla_ 143 LIARALMVNPRLAILDEP 160 (238)
T ss_dssp HHHHHHTTCCSEEEEEST
T ss_pred HHHHHHhcCCCEEEecCC
Confidence 455566678999999994
No 82
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=29.71 E-value=57 Score=19.97 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=14.7
Q ss_pred HHHHHHhhhCCCeEEEEc
Q psy3540 5 QRTNVPSNSYRVSTIFID 22 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iD 22 (202)
.+.++..+...|.+|++|
T Consensus 37 ~~a~~~l~~~~~dlii~D 54 (123)
T d1krwa_ 37 NEVLAALASKTPDVLLSD 54 (123)
T ss_dssp HHHHHHHTTCCCSEEEEC
T ss_pred HHHHHHHHhCCCCEEEeh
Confidence 456777788899999998
No 83
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=29.63 E-value=34 Score=23.06 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=11.0
Q ss_pred eEEEEcccccccc
Q psy3540 17 STIFIDEVDSLCS 29 (202)
Q Consensus 17 ~Ii~iDeiD~l~~ 29 (202)
..+++||+|.++.
T Consensus 149 ~~lViDEad~ll~ 161 (209)
T d1q0ua_ 149 HILVVDEADLMLD 161 (209)
T ss_dssp CEEEECSHHHHHH
T ss_pred eEEEEeecccccc
Confidence 4689999999985
No 84
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.45 E-value=38 Score=17.83 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHH
Q psy3540 98 RYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARD 138 (202)
Q Consensus 98 R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 138 (202)
-..+|+.++...+..+......||..+ |++...|..=.++
T Consensus 8 q~~~Le~~F~~~~~P~~~~~~~LA~~l-gl~~~qV~~WFqN 47 (53)
T d1le8a_ 8 ARAFLEQVFRRKQSLNSKEKEEVAKKC-GITPLQVRVWFIN 47 (53)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHT-TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH-CCCHHHHHHHHHh
Confidence 345666666544444566788888888 7898888765443
No 85
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=28.76 E-value=20 Score=25.05 Aligned_cols=122 Identities=8% Similarity=-0.006 Sum_probs=61.2
Q ss_pred eEEEEEecCCCCCccHHHHh--cccceeeecCCCHHHHHHHHHHHhcCcc------cCCcccHHHHHHHccCCCHHHHHH
Q psy3540 63 IIMILAATNHPWDIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVV------IDVNLDFHKISKMLEGYTGSDIAN 134 (202)
Q Consensus 63 ~v~viatTn~~~~ld~al~r--rf~~~i~i~~P~~~~R~~il~~~l~~~~------~~~~~~~~~la~~t~g~s~~dl~~ 134 (202)
..++..+.+.+..++..+.. .++..+.+..++...+..++..+.+... .........+...+.+..+.++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~ 190 (273)
T d1gvnb_ 111 NLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLET 190 (273)
T ss_dssp CEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcCCcccccccccccchhhHHHHhhhhHHHHHHHHH
Confidence 34555555555555554444 6777788877777777777665543211 111223344555555555666655
Q ss_pred HHHHHHHHHHHHHHhcC-------C--hhHHhhhhhccCCCCCcHHHHHHHHHHhCCCC
Q psy3540 135 LARDAAMMSIRRKIMGQ-------T--PAQIKEIKQEDIDLPVTEKDFREAIARCRKSV 184 (202)
Q Consensus 135 l~~~A~~~a~~~~~~~~-------~--~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~ 184 (202)
++..+....+....... . ...............++.+++..++.+++|+.
T Consensus 191 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 249 (273)
T d1gvnb_ 191 LHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELNRKVSGKEIQPTLERIEQKM 249 (273)
T ss_dssp HHHHTCCSCEEEECTTCCEEEETTTCTTSCHHHHHHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHhhhccccCCccchhhhhhHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 55543221111000000 0 00000111122245788899999999987643
No 86
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}
Probab=28.45 E-value=64 Score=20.86 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=32.9
Q ss_pred ceEEEEEecCCCCCccHHHHhcccceeeecC---CCHHHHHHHHHHHhc
Q psy3540 62 KIIMILAATNHPWDIDEAFRRRFEKRVYIPL---PNEWARYQLLTLCLE 107 (202)
Q Consensus 62 ~~v~viatTn~~~~ld~al~rrf~~~i~i~~---P~~~~R~~il~~~l~ 107 (202)
.-+++||- ++-+++.++.|.+..+.+.. |-.-.|.-+++..-+
T Consensus 97 ~i~fiIGG---a~G~~~~~~~~a~~~lsls~mT~pH~lar~~l~EQlYR 142 (153)
T d1ns5a_ 97 DVSLLIGG---PEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYR 142 (153)
T ss_dssp CEEEEECB---TTBCCHHHHHHCSEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred cEEEEEEc---CCCCCHHHHHhhCcEEecccCCchHHHHHHHHHHHHHH
Confidence 45677776 57899999999999998865 666677777766554
No 87
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.64 E-value=40 Score=18.14 Aligned_cols=26 Identities=8% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHH
Q psy3540 167 PVTEKDFREAIARCRKSVTAHDLSKY 192 (202)
Q Consensus 167 ~it~~df~~Al~~~~Ps~s~~~~~~~ 192 (202)
.|+.++|..++..+....+.+++..+
T Consensus 19 ~I~~~el~~~l~~lg~~~~~~e~~~l 44 (65)
T d1fw4a_ 19 YISAAELRHVMTNLGEKLTDEEVDEM 44 (65)
T ss_dssp EECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHH
Confidence 69999999999999888888877654
No 88
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=27.22 E-value=82 Score=21.22 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=28.2
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHh
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD 52 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld 52 (202)
+..+........|.++++|.++.++... ........+..|...+.
T Consensus 105 ~~~i~~~i~~~~~~~vviDs~~~~~~~~----~~~~~~~~~~~l~~~~~ 149 (242)
T d1tf7a2 105 LQIIKSEINDFKPARIAIDSLSALARGV----SNNAFRQFVIGVTGYAK 149 (242)
T ss_dssp HHHHHHHHHTTCCSEEEEECHHHHTSSS----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceeeeecchhhhcCC----CHHHHHHHHHHHHHHHH
Confidence 4455666677899999999999987532 22233344444444443
No 89
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.97 E-value=21 Score=24.74 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=12.4
Q ss_pred CCeEEEEcccccccc
Q psy3540 15 RVSTIFIDEVDSLCS 29 (202)
Q Consensus 15 ~P~Ii~iDeiD~l~~ 29 (202)
....+++||+|.++.
T Consensus 151 ~l~~lVlDEad~lld 165 (212)
T d1qdea_ 151 KIKMFILDEADEMLS 165 (212)
T ss_dssp TCCEEEEETHHHHHH
T ss_pred cceEEeehhhhhhcc
Confidence 366889999999975
No 90
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}
Probab=26.75 E-value=11 Score=26.92 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=8.5
Q ss_pred CCeEEEEccc
Q psy3540 15 RVSTIFIDEV 24 (202)
Q Consensus 15 ~P~Ii~iDei 24 (202)
.|.||++||-
T Consensus 150 ~p~llllDEP 159 (231)
T d1l7vc_ 150 AGQLLLLDEP 159 (231)
T ss_dssp TCCEEEESSC
T ss_pred CCCEEEEcCC
Confidence 6789999994
No 91
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.70 E-value=34 Score=20.07 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=14.3
Q ss_pred CCcHHHHHHHHHHhCC
Q psy3540 167 PVTEKDFREAIARCRK 182 (202)
Q Consensus 167 ~it~~df~~Al~~~~P 182 (202)
.|+.+|+..|++...-
T Consensus 56 TI~~~dv~~Al~~~~~ 71 (87)
T d1n1ja_ 56 TINGEDILFAMSTLGF 71 (87)
T ss_dssp SBCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHcCc
Confidence 7999999999999764
No 92
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}
Probab=26.21 E-value=28 Score=25.13 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=14.0
Q ss_pred HHHHhhhCCCeEEEEcc
Q psy3540 7 TNVPSNSYRVSTIFIDE 23 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDe 23 (202)
++..|-...|.||++||
T Consensus 159 ~iAraL~~~P~llilDE 175 (258)
T d1b0ua_ 159 SIARALAMEPDVLLFDE 175 (258)
T ss_dssp HHHHHHHTCCSEEEEES
T ss_pred HHHHHHhcCCCEEEecc
Confidence 45666678999999999
No 93
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.21 E-value=51 Score=21.10 Aligned_cols=15 Identities=7% Similarity=0.173 Sum_probs=13.6
Q ss_pred CCcHHHHHHHHHHhC
Q psy3540 167 PVTEKDFREAIARCR 181 (202)
Q Consensus 167 ~it~~df~~Al~~~~ 181 (202)
.|+.+|+..||..+-
T Consensus 57 Ti~~~Dv~~Al~~~~ 71 (135)
T d1jfib_ 57 TISPEHVIQALESLG 71 (135)
T ss_dssp SBCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHcC
Confidence 799999999999875
No 94
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=26.13 E-value=66 Score=19.51 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=45.2
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHHHHhc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRR 83 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~al~rr 83 (202)
-.+.++.++...|.+|++|= -.+. .++ -+++..+...... .+|+++.+....+....++.-
T Consensus 35 ~~~al~~l~~~~~dlillD~---~mp~-----~~G------~~~~~~~r~~~~~----~~ii~lt~~~~~~~~~~~~~~- 95 (121)
T d1mvoa_ 35 GEEALKKAETEKPDLIVLDV---MLPK-----LDG------IEVCKQLRQQKLM----FPILMLTAKDEEFDKVLGLEL- 95 (121)
T ss_dssp HHHHHHHHHHHCCSEEEEES---SCSS-----SCH------HHHHHHHHHTTCC----CCEEEEECTTCCCCHHHHHHT-
T ss_pred HHHHHHHHhcccccEEEecc---cccC-----CCC------chhhhhhhccCCC----CEEEEEEeeCCHHHHHHHHHC-
Confidence 35667778888999999773 2332 112 1233333333222 456666666666555455433
Q ss_pred ccceeeecCC-CHHHHHHHHHHHhc
Q psy3540 84 FEKRVYIPLP-NEWARYQLLTLCLE 107 (202)
Q Consensus 84 f~~~i~i~~P-~~~~R~~il~~~l~ 107 (202)
+-.-++..| +.++-..-++..++
T Consensus 96 -Ga~~yl~KP~~~~~L~~~i~~~lr 119 (121)
T d1mvoa_ 96 -GADDYMTKPFSPREVNARVKAILR 119 (121)
T ss_dssp -TCCEEEESSCCHHHHHHHHHHHHH
T ss_pred -CCCEEEECCCCHHHHHHHHHHHHc
Confidence 333456666 66665555555553
No 95
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=25.95 E-value=67 Score=19.51 Aligned_cols=20 Identities=10% Similarity=0.022 Sum_probs=15.9
Q ss_pred HHHHHHHhhhCCCeEEEEcc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDE 23 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDe 23 (202)
-.+....++...|.++++|=
T Consensus 33 g~eal~~l~~~~~dliilD~ 52 (119)
T d2pl1a1 33 AKEADYYLNEHIPDIAIVDL 52 (119)
T ss_dssp HHHHHHHHHHSCCSEEEECS
T ss_pred HHHHHHHHHhcccceeehhc
Confidence 45667778889999999884
No 96
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}
Probab=25.04 E-value=71 Score=22.92 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=22.7
Q ss_pred HHHHHHHhhhCCCeEEEEcccccccccc
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMR 31 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r 31 (202)
+..+++..+..+|.+++++|+-.+...+
T Consensus 101 ~~~~~~~i~~~kP~~~~lENV~~~~~~~ 128 (327)
T d2c7pa1 101 FFDIARIVREKKPKVVFMENVKNFASHD 128 (327)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEGGGGTGG
T ss_pred HHHHHHHHhccCCcEEecccchhhhhhc
Confidence 4566777888999999999999987543
No 97
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.80 E-value=23 Score=17.47 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=19.0
Q ss_pred CcHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy3540 168 VTEKDFREAIARCRKSVTAHDLSKYDSWMNE 198 (202)
Q Consensus 168 it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~ 198 (202)
++.+||..++. .+.++..++-.|++.
T Consensus 2 Lsd~dF~~vFg-----msr~eF~~LP~WKq~ 27 (36)
T d1unda_ 2 LSEQDFVSVFG-----ITRGQFAALPGWKQL 27 (36)
T ss_dssp CCHHHHHHHHS-----SCHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHC-----cCHHHHHHCcHHHHH
Confidence 56788888774 467778888888764
No 98
>d1lh0a_ c.61.1.1 (A:) Orotate PRTase {Salmonella typhimurium [TaxId: 90371]}
Probab=24.75 E-value=26 Score=24.50 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=25.8
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Q psy3540 167 PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 201 (202)
Q Consensus 167 ~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~~~~~ 201 (202)
.++.+|+...+...... .+++...++|.++||.
T Consensus 181 l~~~~dl~~~l~~~~~~--~~~~~~i~~y~~~yg~ 213 (213)
T d1lh0a_ 181 IITLKDLIAYLEEKPDM--AEHLAAVRAYREEFGV 213 (213)
T ss_dssp EEEHHHHHHHHHHCGGG--HHHHHHHHHHHHHHBC
T ss_pred EccHHHHHHHHHHcCcc--HHHHHHHHHHHHHcCC
Confidence 47889999887654332 4689999999999993
No 99
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=24.69 E-value=16 Score=21.55 Aligned_cols=43 Identities=26% Similarity=0.266 Sum_probs=26.5
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHh
Q psy3540 117 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 117 ~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 180 (202)
++.|+...+ .-++.++++|...+-.... -.|+.+|+..||+..
T Consensus 32 ~~~l~~~l~----~~l~~i~~~a~~~~~hakR-----------------KTvt~~DV~~Alkr~ 74 (82)
T d2huec1 32 YEETRGVLK----VFLENVIRDAVTYTEHAKR-----------------KTVTAMDVVYALKRQ 74 (82)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHTTTT
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCC-----------------CcCCHHHHHHHHHhc
Confidence 444544332 3355667777666543322 269999999999865
No 100
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=24.45 E-value=14 Score=26.58 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=15.6
Q ss_pred HHHHhhhCCCeEEEEccccccc
Q psy3540 7 TNVPSNSYRVSTIFIDEVDSLC 28 (202)
Q Consensus 7 ~F~~A~~~~P~Ii~iDeiD~l~ 28 (202)
.++.|-...|.|+++||.-+=+
T Consensus 149 ~iARal~~~p~ililDEpts~L 170 (242)
T d1mv5a_ 149 AIARAFLRNPKILMLDEATASL 170 (242)
T ss_dssp HHHHHHHHCCSEEEEECCSCSS
T ss_pred HHHHHHhcCCCEEEecCCcccc
Confidence 3455555689999999975543
No 101
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
Probab=24.32 E-value=1.3e+02 Score=22.30 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=44.9
Q ss_pred CCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCccHH--------HHhccc
Q psy3540 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEA--------FRRRFE 85 (202)
Q Consensus 14 ~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~ld~a--------l~rrf~ 85 (202)
..|..+++||+..+..-. .+..++... .+ .++.++.+|..+..|... ++.-+.
T Consensus 275 ~~~v~l~lDE~~~~~~~~-----------~l~~~l~~~---Rk-----~Gv~~~l~~Qs~~ql~~~yg~~~a~~i~~n~~ 335 (433)
T d1e9ra_ 275 KRRLWLFIDELASLEKLA-----------SLADALTKG---RK-----AGLRVVAGLQSTSQLDDVYGVKEAQTLRASFR 335 (433)
T ss_dssp TCCEEEEESCGGGSCBCS-----------SHHHHHHHC---TT-----TTEEEEEEESCHHHHHHHHCHHHHHHHHTTCC
T ss_pred CCceEEEechHhhhcccH-----------HHHHHHHHh---CC-----CCceEEEEeccHHHHHHHHhHHHHHHHHHhcC
Confidence 357789999998875421 133444433 22 567888888887777542 444556
Q ss_pred ceeeec--CCCHHHHHHHHHHHhcC
Q psy3540 86 KRVYIP--LPNEWARYQLLTLCLEG 108 (202)
Q Consensus 86 ~~i~i~--~P~~~~R~~il~~~l~~ 108 (202)
..|.+. .+|.+.. +.+...+++
T Consensus 336 t~i~~~~~~~d~~ta-e~~s~~~G~ 359 (433)
T d1e9ra_ 336 SLVVLGGSRTDPKTN-EDMSLSLGE 359 (433)
T ss_dssp EEEEEECCTTCHHHH-HHHHHHHCE
T ss_pred cEEEecCCCCCHHHH-HHHHHHhCC
Confidence 666664 3466654 445555643
No 102
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.18 E-value=57 Score=18.06 Aligned_cols=27 Identities=4% Similarity=0.132 Sum_probs=21.5
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHHH
Q psy3540 167 PVTEKDFREAIARCRKSVTAHDLSKYD 193 (202)
Q Consensus 167 ~it~~df~~Al~~~~Ps~s~~~~~~~~ 193 (202)
.|+.++|..++..+....+.+++..+-
T Consensus 26 ~I~~~el~~~l~~~g~~~t~~e~~~~~ 52 (77)
T d1f54a_ 26 SISSSELATVMRSLGLSPSEAEVNDLM 52 (77)
T ss_dssp EEEHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred eEChHHHHHHHHHhCCCCCHHHHHHHH
Confidence 688999999999988887877776543
No 103
>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.08 E-value=27 Score=23.50 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=24.7
Q ss_pred CCeEEEEcccc-ccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCCCc
Q psy3540 15 RVSTIFIDEVD-SLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76 (202)
Q Consensus 15 ~P~Ii~iDeiD-~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~~l 76 (202)
.|-++++ ++| +|+.... ..+.+....+-. + .. .++++++|+.+...+
T Consensus 2 ~~kl~~f-DlDGTLl~~~~-----~i~~~~~~al~~-l---~~-----~g~~~i~Tgr~~~~~ 49 (243)
T d2amya1 2 GPALCLF-DVDGTLTAPRQ-----KITKEMDDFLQK-L---RQ-----KIKIGVVGGSDFEKV 49 (243)
T ss_dssp CSEEEEE-ESBTTTBCTTS-----CCCHHHHHHHHH-H---TT-----TSEEEEECSSCHHHH
T ss_pred CCEEEEE-cCcCCeeCCCC-----cCCHHHHHHHHH-H---Hc-----CCCEEEEcCCChHHh
Confidence 5778888 777 6654321 112333333333 2 22 235778888865433
No 104
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=24.02 E-value=86 Score=20.69 Aligned_cols=45 Identities=24% Similarity=0.328 Sum_probs=28.1
Q ss_pred HHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHh
Q psy3540 5 QRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMD 52 (202)
Q Consensus 5 ~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld 52 (202)
..+-...+.+.|.++++|.++.+.... .......+....++..+.
T Consensus 115 ~~l~~~i~~~~~~~viiD~~~~l~~~~---~~~~~~~~~~~~~~~~~~ 159 (242)
T d1tf7a1 115 ERINYAIQKYRARRVSIDSVTSVFQQY---DASSVVRRELFRLVARLK 159 (242)
T ss_dssp HHHHHHHHHHTCSEEEEECSTTTSTTT---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccchhhhhHHHHHHHhc---cChhHHHHHHHHHHHHHH
Confidence 445556677899999999999987543 222333344445554444
No 105
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}
Probab=23.98 E-value=23 Score=19.73 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=24.8
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy3540 167 PVTEKDFREAIARCRKSVTAHDLSKYDSWMN 197 (202)
Q Consensus 167 ~it~~df~~Al~~~~Ps~s~~~~~~~~~~~~ 197 (202)
.|+.++|..++..+...++.+++..+-+...
T Consensus 24 ~I~~~el~~~l~~~g~~~s~~~~~~~~~~~D 54 (73)
T d2pq3a1 24 TITTKELGTVMRSLGQNPTEAELQDMINEVD 54 (73)
T ss_dssp EEEGGGHHHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred eEeHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 6889999999999988888888776655443
No 106
>d2gf5a1 a.77.1.2 (A:89-191) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.51 E-value=71 Score=18.93 Aligned_cols=86 Identities=14% Similarity=0.230 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHHH---HHHHHHHHhcCChhHHhhhhhccCCCCC
Q psy3540 92 LPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAA---MMSIRRKIMGQTPAQIKEIKQEDIDLPV 168 (202)
Q Consensus 92 ~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A~---~~a~~~~~~~~~~~~~~~~~~~~~~~~i 168 (202)
.|..+.....|.....+++ .+|..||... |++..||..+-..-. .......+. .+.. .. ...-
T Consensus 3 ~~~~~dl~~~f~~ia~~lg----~~W~~La~~L-gl~~~~I~~I~~~~~~~~~e~~~~mL~-----~W~~---~~-g~~a 68 (103)
T d2gf5a1 3 APGEEDLCAAFNVICDNVG----KDWRRLARQL-KVSDTKIDSIEDRYPRNLTERVRESLR-----IWKN---TE-KENA 68 (103)
T ss_dssp STTHHHHHHHHHHHHHSCC----TTHHHHHHHT-TCCHHHHHHHHHHSSSCSHHHHHHHHH-----HHHH---HT-TTTC
T ss_pred CcchhhHHHHHHHHHHHHH----HhHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHH-----HHHH---Hc-CCCc
Confidence 4677777777777777653 3799999886 899999988633210 011111100 0000 00 1145
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHH
Q psy3540 169 TEKDFREAIARCRKSVTAHDLSK 191 (202)
Q Consensus 169 t~~df~~Al~~~~Ps~s~~~~~~ 191 (202)
|.+.+..||..+....-.+.++.
T Consensus 69 t~~~L~~aL~~~~~~dlad~i~~ 91 (103)
T d2gf5a1 69 TVAHLVGALRSCQMNLVADLVQE 91 (103)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCcHHHHHHHHH
Confidence 78999999999876533344443
No 107
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.37 E-value=91 Score=20.95 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=11.0
Q ss_pred eEEEEcccccccc
Q psy3540 17 STIFIDEVDSLCS 29 (202)
Q Consensus 17 ~Ii~iDeiD~l~~ 29 (202)
..+++||+|.++.
T Consensus 147 ~~lVlDEaD~ll~ 159 (207)
T d1t6na_ 147 KHFILDECDKMLE 159 (207)
T ss_dssp CEEEEESHHHHHS
T ss_pred ceeehhhhhhhhh
Confidence 4789999999974
No 108
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=23.31 E-value=79 Score=19.43 Aligned_cols=85 Identities=8% Similarity=-0.070 Sum_probs=42.4
Q ss_pred HHHHHHHhhhCCCeEEEEccccccccccCCCCcchHHHHHHHHHHHHHhCCCCCCCCCceEEEEEecCCCC--CccHHHH
Q psy3540 4 VQRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW--DIDEAFR 81 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iDeiD~l~~~r~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~v~viatTn~~~--~ld~al~ 81 (202)
-.+.++..+...|.+|++|- -.+. .++ -+++..+...... ..+-||..|...+ ....++
T Consensus 40 ~~~al~~l~~~~~dlii~D~---~mP~-----~~G------~el~~~lr~~~~~----~~~pii~lt~~~~~~~~~~a~- 100 (129)
T d1p6qa_ 40 GEQGMKIMAQNPHHLVISDF---NMPK-----MDG------LGLLQAVRANPAT----KKAAFIILTAQGDRALVQKAA- 100 (129)
T ss_dssp HHHHHHHHHTSCCSEEEECS---SSCS-----SCH------HHHHHHHTTCTTS----TTCEEEECCSCCCHHHHHHHH-
T ss_pred HHHHHHHHHhCCCCeEEeee---ecCC-----CCh------HHHHHHHHhCccc----CCCeEEEEEecCCHHHHHHHH-
Confidence 35667777888899999873 1232 112 3455566543332 2233344443322 122222
Q ss_pred hcccceeeecCC-CHHHHHHHHHHHhcC
Q psy3540 82 RRFEKRVYIPLP-NEWARYQLLTLCLEG 108 (202)
Q Consensus 82 rrf~~~i~i~~P-~~~~R~~il~~~l~~ 108 (202)
..+..-++..| +.++-...++..++.
T Consensus 101 -~~G~~~~l~KP~~~~~L~~~i~~vl~~ 127 (129)
T d1p6qa_ 101 -ALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp -HHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred -HCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 23333455555 666666666666543
No 109
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.24 E-value=34 Score=21.68 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=25.9
Q ss_pred HhCCCCCCCCCceEEEEEecCCCCCccHHHHh----cccceeeecCCC
Q psy3540 51 MDGLNSSLYEDKIIMILAATNHPWDIDEAFRR----RFEKRVYIPLPN 94 (202)
Q Consensus 51 ld~~~~~~~~~~~v~viatTn~~~~ld~al~r----rf~~~i~i~~P~ 94 (202)
||.+... ..|.|||+++++..+-..+.+ .+...++-=-|.
T Consensus 2 L~~lf~P----ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~ 45 (129)
T d2csua1 2 LDYFFNP----KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIK 45 (129)
T ss_dssp CCTTTSC----SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSS
T ss_pred hhHhCCC----CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccC
Confidence 3455554 779999999999987766665 453344433454
No 110
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.09 E-value=40 Score=18.25 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy3540 167 PVTEKDFREAIARCRKSVTAHDLSKYDSWM 196 (202)
Q Consensus 167 ~it~~df~~Al~~~~Ps~s~~~~~~~~~~~ 196 (202)
.|+..+|..+++.+....+.+++..+-...
T Consensus 17 ~I~~~El~~~l~~lg~~~~~~~i~~~~~~~ 46 (67)
T d1tiza_ 17 KLSLDEFREVALAFSPYFTQEDIVKFFEEI 46 (67)
T ss_dssp CEEHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhccccchHHHHHHHHHh
Confidence 699999999999998888888877654443
No 111
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=22.71 E-value=29 Score=24.39 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=11.7
Q ss_pred CeEEEEcccccccc
Q psy3540 16 VSTIFIDEVDSLCS 29 (202)
Q Consensus 16 P~Ii~iDeiD~l~~ 29 (202)
-..+++||+|.++.
T Consensus 173 v~~lViDEaD~ll~ 186 (238)
T d1wrba1 173 CKYIVLDEADRMLD 186 (238)
T ss_dssp CCEEEEETHHHHHH
T ss_pred cceeeeehhhhhhh
Confidence 45788999999985
No 112
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.06 E-value=25 Score=20.19 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=25.8
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhcCChhHHhhhhhccCCCCCcHHHHHHHHHHh
Q psy3540 117 FHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARC 180 (202)
Q Consensus 117 ~~~la~~t~g~s~~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 180 (202)
..-++..|+=| |..++..|...|..... ..|+.+|+..|++..
T Consensus 24 ~~~i~~a~E~F----i~~l~~~A~~~a~~~~r-----------------kti~~~dl~~av~~~ 66 (78)
T d1n1jb_ 24 PVLFAKAAQIF----ITELTLRAWIHTEDNKR-----------------RTLQRNDIAMAITKF 66 (78)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHTTC-----------------SEECHHHHHHHHTTC
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHcCC-----------------CcCCHHHHHHHHhcC
Confidence 44455555433 34556666555544322 269999999998764
No 113
>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.03 E-value=46 Score=17.64 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHH
Q psy3540 167 PVTEKDFREAIARCRKSVTAHDLSKY 192 (202)
Q Consensus 167 ~it~~df~~Al~~~~Ps~s~~~~~~~ 192 (202)
.|+.++|..++..+....+.+++..+
T Consensus 17 ~I~~~el~~~l~~~g~~~~~~ei~~l 42 (61)
T d2fcea1 17 KVSVGDLRYMLTGLGEKLTDAEVDEL 42 (61)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred eEeHHHHHHHHHHcCCCCCHHHHHHH
Confidence 79999999999999988898887754
No 114
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=21.92 E-value=81 Score=19.04 Aligned_cols=19 Identities=5% Similarity=0.046 Sum_probs=15.4
Q ss_pred HHHHHHHhhhCCCeEEEEc
Q psy3540 4 VQRTNVPSNSYRVSTIFID 22 (202)
Q Consensus 4 i~~~F~~A~~~~P~Ii~iD 22 (202)
-.+.++.++...|.+|++|
T Consensus 35 ~~~al~~~~~~~~dliilD 53 (118)
T d1u0sy_ 35 GREAVEKYKELKPDIVTMD 53 (118)
T ss_dssp HHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHhccCCEEEEe
Confidence 3566777888899999997
No 115
>d2eiaa2 a.73.1.1 (A:17-147) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=21.04 E-value=68 Score=20.57 Aligned_cols=47 Identities=4% Similarity=-0.068 Sum_probs=31.3
Q ss_pred HHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHH-----HHHHHHHHHH
Q psy3540 102 LTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARD-----AAMMSIRRKI 148 (202)
Q Consensus 102 l~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~-----A~~~a~~~~~ 148 (202)
|-.......+.+++-...++..++|+++-||..+... |.++-++..+
T Consensus 7 Wvk~veek~f~~E~v~~mFsalSeg~tp~Din~mLn~vgg~qaa~Qiikd~I 58 (131)
T d2eiaa2 7 WVNTIQTNGLLNEASQNLFGILSVDCTSEEMNAFLDVVPGQAGQKQILLDAI 58 (131)
T ss_dssp HHHHHHHTCSSSHHHHHHHHHHCTTCCHHHHHHHHHSSCCCTHHHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHhCCCCHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3333444455666655679999999999999888764 4455555444
No 116
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=20.84 E-value=72 Score=18.06 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHHH
Q psy3540 167 PVTEKDFREAIARCRKSVTAHDLSKYD 193 (202)
Q Consensus 167 ~it~~df~~Al~~~~Ps~s~~~~~~~~ 193 (202)
.|+..+|..+++.+....+.+++..+.
T Consensus 32 ~I~~~el~~~l~~lg~~~t~~el~~~i 58 (82)
T d1wrka1 32 SISTKELGKVMRMLGQNPTPEELQEMI 58 (82)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred eEeHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 699999999999988888888777654
No 117
>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.58 E-value=61 Score=18.25 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy3540 167 PVTEKDFREAIARCRKSVTAHDLSKYDSWM 196 (202)
Q Consensus 167 ~it~~df~~Al~~~~Ps~s~~~~~~~~~~~ 196 (202)
.|+.++|..++..+....+.+++..+-...
T Consensus 30 ~I~~~el~~~l~~~g~~~s~~e~~~~~~~~ 59 (81)
T d1avsa_ 30 DISTKELGTVMRMLGQNPTKEELDAIIEEV 59 (81)
T ss_dssp EECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred eEchhHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 699999999999998888888877654443
No 118
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.38 E-value=56 Score=21.75 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=11.4
Q ss_pred CeEEEEcccccccc
Q psy3540 16 VSTIFIDEVDSLCS 29 (202)
Q Consensus 16 P~Ii~iDeiD~l~~ 29 (202)
-..|++||++.+..
T Consensus 139 ~~~ii~DE~h~~~~ 152 (202)
T d2p6ra3 139 VSCLVVDEIHLLDS 152 (202)
T ss_dssp CCEEEETTGGGGGC
T ss_pred hhhccccHHHHhcc
Confidence 46899999998754
No 119
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=20.24 E-value=44 Score=19.44 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=27.9
Q ss_pred HHHHHHhcCcccCCcccHHHHHHHccCCCHHHHHHHHHHH
Q psy3540 100 QLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDA 139 (202)
Q Consensus 100 ~il~~~l~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~A 139 (202)
.|.+..+.+........+.+||+.+ |.|++-|..+|+.-
T Consensus 22 ~ia~yil~~~~~~~~~si~~lA~~~-~vS~sTi~Rf~kkl 60 (83)
T d2o3fa1 22 KLADYILAHPHKAIESTVNEISALA-NSSDAAVIRLCKSL 60 (83)
T ss_dssp HHHHHHHHCHHHHHTCCHHHHHHHT-TCCHHHHHHHHHHT
T ss_pred HHHHHHHcCHHHHHHccHHHHHHHH-CCCHHHHHHHHHHh
Confidence 3556666554434456789999997 69999998888764
Done!