RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3540
(202 letters)
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 235 bits (602), Expect = 2e-78
Identities = 78/186 (41%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
S IFIDEVDSL S R S SEHEASRR K E L++ DGL + + I++LAATN P ++
Sbjct: 115 SIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGN-PDGDRIVVLAATNRPQEL 172
Query: 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVN-LDFHKISKMLEGYTGSDIANL 135
DEA RRF KRVY+ LP+E R LL L+ ++ +++K+ +GY+GSD+ L
Sbjct: 173 DEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTAL 232
Query: 136 ARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW 195
A+DAA+ IR Q+K + + +TE+DF ++ R R+SV L+ Y+ W
Sbjct: 233 AKDAALEPIRELN----VEQVKCLDISAMR-AITEQDFHSSLKRIRRSVAPQSLNSYEKW 287
Query: 196 MNEFGS 201
++G
Sbjct: 288 SQDYGD 293
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 237 bits (605), Expect = 1e-77
Identities = 72/186 (38%), Positives = 107/186 (57%), Gaps = 9/186 (4%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
S IFID+VDSL R EH+ASRR K E LI+ DG+ S+ D ++++ ATN P ++
Sbjct: 209 SIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSA--GDDRVLVMGATNRPQEL 265
Query: 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDV-NLDFHKISKMLEGYTGSDIANL 135
DEA RRF KRVY+ LPNE R LL L + + ++++M +GY+GSD+ L
Sbjct: 266 DEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTAL 325
Query: 136 ARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW 195
A+DAA+ IR P Q+K + ++ + DF E++ + ++SV+ L Y W
Sbjct: 326 AKDAALGPIRELK----PEQVKNMSASEMR-NIRLSDFTESLKKIKRSVSPQTLEAYIRW 380
Query: 196 MNEFGS 201
+FG
Sbjct: 381 NKDFGD 386
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 235 bits (601), Expect = 2e-77
Identities = 70/186 (37%), Positives = 103/186 (55%), Gaps = 9/186 (4%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
+ IFIDE+DSL S RG EHE+SRR K E L+Q+DG +S + I+++ ATN P +I
Sbjct: 178 AVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTS--SEDRILVVGATNRPQEI 234
Query: 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDV-NLDFHKISKMLEGYTGSDIANL 135
DEA RRR KR+YIPLP AR Q++ + + + +I + + ++G+D+ L
Sbjct: 235 DEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQL 294
Query: 136 ARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSW 195
R+A++ IR A I I + + P+ DF A R SV+ DL Y++W
Sbjct: 295 CREASLGPIRSLQ----TADIATITPDQVR-PIAYIDFENAFRTVRPSVSPKDLELYENW 349
Query: 196 MNEFGS 201
FG
Sbjct: 350 NKTFGC 355
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 229 bits (586), Expect = 9e-76
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 37/218 (16%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
S IFIDE+DSLC R ++E EA+RR K E L+QM G+ + I++L ATN PW +
Sbjct: 107 SIIFIDEIDSLCGSRS-ENESEAARRIKTEFLVQMQGVGVD---NDGILVLGATNIPWVL 162
Query: 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDV-NLDFHKISKMLEGYTGSDIANL 135
D A RRRFEKR+YIPLP AR + L L + DF ++ + +GY+G+DI+ +
Sbjct: 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISII 222
Query: 136 ARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL----------------------------- 166
RDA M +R+ +++ + D +
Sbjct: 223 VRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKL 282
Query: 167 ---PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 201
V+ D +++ + +V HDL K + +FG
Sbjct: 283 LEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 228 bits (582), Expect = 4e-75
Identities = 74/212 (34%), Positives = 107/212 (50%), Gaps = 31/212 (14%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
S IFID+VD+L RG + E EASRR K ELL+QM+G+ + + + +++L ATN PW +
Sbjct: 112 SIIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGN---DSQGVLVLGATNIPWQL 167
Query: 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVN-LDFHKISKMLEGYTGSDIANL 135
D A RRRFE+R+YIPLP+ AR + + + + D+ + M EGY+GSDIA +
Sbjct: 168 DSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVV 227
Query: 136 ARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL--------------------------PVT 169
+DA M IR+ + E L +T
Sbjct: 228 VKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLT 287
Query: 170 EKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 201
KDF +AI R +V DL K + + +FG
Sbjct: 288 IKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 222 bits (568), Expect = 1e-72
Identities = 74/212 (34%), Positives = 111/212 (52%), Gaps = 31/212 (14%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
S IFID+VD+L RG + E EASRR K ELL+QM+G+ + + + +++L ATN PW +
Sbjct: 145 SIIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVGN---DSQGVLVLGATNIPWQL 200
Query: 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV-IDVNLDFHKISKMLEGYTGSDIANL 135
D A RRRFE+R+YIPLP+ AR + + + + D+ + M EGY+GSDIA +
Sbjct: 201 DSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVV 260
Query: 136 ARDAAMMSIRRKI-------------------------MGQTPAQIKEIKQEDIDL-PVT 169
+DA M IR+ G +I+ +++ +T
Sbjct: 261 VKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLT 320
Query: 170 EKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 201
KDF +AI R +V DL K + + +FG
Sbjct: 321 IKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 220 bits (563), Expect = 6e-71
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 37/218 (16%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
S IFIDE+DSLC R ++E EA+RR K E L+QM G+ ++ I++L ATN PW +
Sbjct: 229 SIIFIDEIDSLCGSRS-ENESEAARRIKTEFLVQMQGVGV---DNDGILVLGATNIPWVL 284
Query: 77 DEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDV-NLDFHKISKMLEGYTGSDIANL 135
D A RRRFEKR+YIPLP AR + L L + DF ++ + +GY+G+DI+ +
Sbjct: 285 DSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISII 344
Query: 136 ARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL----------------------------- 166
RDA M +R+ +++ + D +
Sbjct: 345 VRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKL 404
Query: 167 ---PVTEKDFREAIARCRKSVTAHDLSKYDSWMNEFGS 201
V+ D +++ + +V DL K + +FG
Sbjct: 405 LEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQ 442
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 160 bits (407), Expect = 5e-46
Identities = 56/195 (28%), Positives = 100/195 (51%), Gaps = 16/195 (8%)
Query: 17 STIFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW 74
+F DE+DS+ RG + A+ R ++L +MDG+++ K + I+ ATN P
Sbjct: 572 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK----KNVFIIGATNRPD 627
Query: 75 DIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDI 132
ID A R R ++ +YIPLP+E +R +L L + ++D ++KM G++G+D+
Sbjct: 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADL 687
Query: 133 ANLARDAAMMSIRRKI--------MGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSV 184
+ + A ++IR I QT E++++D + F EA+ R+SV
Sbjct: 688 TEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747
Query: 185 TAHDLSKYDSWMNEF 199
+ +D+ KY+ +
Sbjct: 748 SDNDIRKYEMFAQTL 762
Score = 133 bits (336), Expect = 2e-36
Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 7/169 (4%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
+ IFIDE+D++ R E RR ++LL MDGL ++++AATN P I
Sbjct: 299 AIIFIDELDAIAPKREKTHG-EVERRIVSQLLTLMDGLKQ----RAHVIVMAATNRPNSI 353
Query: 77 DEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIAN 134
D A RR RF++ V I +P+ R ++L + + + + ++D +++ G+ G+D+A
Sbjct: 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 413
Query: 135 LARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 183
L +AA+ +IR+K+ + L VT DFR A+++ S
Sbjct: 414 LCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 151 bits (383), Expect = 2e-45
Identities = 56/195 (28%), Positives = 100/195 (51%), Gaps = 16/195 (8%)
Query: 17 STIFIDEVDSLCSMRGSDS--EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW 74
+F DE+DS+ RG + A+ R ++L +MDG+++ K + I+ ATN P
Sbjct: 110 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK----KNVFIIGATNRPD 165
Query: 75 DIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDI 132
ID A R R ++ +YIPLP+E +R +L L + ++D ++KM G++G+D+
Sbjct: 166 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADL 225
Query: 133 ANLARDAAMMSIRRKI--------MGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSV 184
+ + A ++IR I QT E++++D + F EA+ R+SV
Sbjct: 226 TEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285
Query: 185 TAHDLSKYDSWMNEF 199
+ +D+ KY+ +
Sbjct: 286 SDNDIRKYEMFAQTL 300
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 137 bits (347), Expect = 3e-40
Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
IF DEVD+LC R AS R +LL +MDGL + + + I+AATN P I
Sbjct: 105 CVIFFDEVDALCPRRSDRE-TGASVRVVNQLLTEMDGLEAR----QQVFIMAATNRPDII 159
Query: 77 DEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVI-----DVNLDFHKISKMLEGYTG 129
D A R R +K +++ LP R +L + DVNL+ + YTG
Sbjct: 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTG 219
Query: 130 SDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHD 188
+D++ L R+A++ ++R+++ ++ E +L V+ K F EA + R S++ D
Sbjct: 220 ADLSALVREASICALRQEM------ARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKD 272
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 134 bits (339), Expect = 2e-37
Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 9/170 (5%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
+ IFIDE+D++ R E RR ++LL MDGL ++++AATN P I
Sbjct: 299 AIIFIDELDAIAPKREKTHG-EVERRIVSQLLTLMDGLKQR----AHVIVMAATNRPNSI 353
Query: 77 DEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIAN 134
D A RR RF++ V I +P+ R ++L + + + + ++D +++ G+ G+D+A
Sbjct: 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 413
Query: 135 LARDAAMMSIRRKIMGQTPAQIKEIKQEDID-LPVTEKDFREAIARCRKS 183
L +AA+ +IR+K M + + I E ++ L VT DFR A+++ S
Sbjct: 414 LCSEAALQAIRKK-MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 113 bits (286), Expect = 4e-31
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 27/172 (15%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASR---RFKAELLIQMDGLNSSLYEDKIIMILAATNHP 73
S IFIDE+D++ + R D+ R R +LL +MDG ++ + +I ATN P
Sbjct: 112 SIIFIDEIDAIAAKRT-DALTGGDREVQRTLMQLLAEMDGFDAR---GDVKII-GATNRP 166
Query: 74 WDIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSD 131
+D A R RF++ + +P P+E R ++L + + + +++ +I+KM EG G++
Sbjct: 167 DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAE 226
Query: 132 IANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 183
+ + +A M +IR VT DFR+A+ + +
Sbjct: 227 LKAICTEAGMNAIRELRD-----------------YVTMDDFRKAVEKIMEK 261
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 81.9 bits (203), Expect = 2e-19
Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 34/171 (19%)
Query: 19 IFIDEVDSLCSMRG------SDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH 72
++IDE+D++ R S++E E + +LL++MDG+ ++ D +I +LA+TN
Sbjct: 102 VYIDEIDAVGKKRSTTMSGFSNTEEEQTLN---QLLVEMDGMGTT---DHVI-VLASTNR 154
Query: 73 PWDIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVI--DVNLDFHKISKMLEGYT 128
+D A R R ++ V+I LP R ++ L+ + + +++++ G++
Sbjct: 155 ADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFS 214
Query: 129 GSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 179
G+DIAN+ +AA+ + R V +F A+ R
Sbjct: 215 GADIANICNEAALHAAREG---------HTS--------VHTLNFEYAVER 248
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 82.5 bits (204), Expect = 3e-19
Identities = 29/183 (15%), Positives = 64/183 (34%), Gaps = 22/183 (12%)
Query: 2 REV-QRTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELL---------IQM 51
R+ + + +FI+++D+ G +++ + + L +Q+
Sbjct: 85 RQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 144
Query: 52 DGLNSSLYEDKIIMILAATNHPWDIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGV 109
G+ + E+ + I+ N + R R EK + P + R + T
Sbjct: 145 PGMY-NKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCTGIFR-- 199
Query: 110 VIDVNLDFHKISKMLEGYTGSDIAN---LARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL 166
N+ + K+++ + G I L +R+ + G +I + D
Sbjct: 200 --TDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDG 257
Query: 167 PVT 169
P T
Sbjct: 258 PPT 260
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 82.0 bits (203), Expect = 4e-19
Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 22/158 (13%)
Query: 19 IFIDEVDSLCSMRGS-----DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHP 73
+FIDE+D++ RGS + E E + +LL++MDG I+++ AATN P
Sbjct: 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLN---QLLVEMDGFEKD---TAIVVM-AATNRP 188
Query: 74 WDIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSD 131
+D A R RF++++ I P+ R Q+L + G + ++D ++K G+ G+D
Sbjct: 189 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
Query: 132 IANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVT 169
+ NL +AA+++ R ++I +D++ +
Sbjct: 249 LENLLNEAALLAAREG--------RRKITMKDLEEAAS 278
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 81.1 bits (201), Expect = 5e-19
Identities = 46/169 (27%), Positives = 88/169 (52%), Gaps = 31/169 (18%)
Query: 19 IFIDEVDSLCSMRGSDS------EHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH 72
IFIDE+D++ R + E E + +LL +MDG S +I++ AATN
Sbjct: 107 IFIDEIDAIGKSRAAGGVVSGNDEREQTLN---QLLAEMDGFGSE--NAPVIVL-AATNR 160
Query: 73 PWDIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGS 130
P +D A R RF+++V + P+ R ++L + ++GV + +++ +++K+ G G+
Sbjct: 161 PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGA 220
Query: 131 DIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 179
D+AN+ +AA+++ R ++E V ++ +EA+ R
Sbjct: 221 DLANIINEAALLAGRNN------------QKE-----VRQQHLKEAVER 252
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 80.8 bits (200), Expect = 5e-19
Identities = 42/155 (27%), Positives = 81/155 (52%), Gaps = 16/155 (10%)
Query: 19 IFIDEVDSLCSMRGSD--SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
+FIDE+D++ RGS ++ + +LL++MDG I+++ AATN P +
Sbjct: 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD---TAIVVM-AATNRPDIL 167
Query: 77 DEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIAN 134
D A R RF++++ I P+ R Q+L + G + ++D ++K G+ G+D+ N
Sbjct: 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 227
Query: 135 LARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVT 169
L +AA+++ R ++I +D++ +
Sbjct: 228 LLNEAALLAAREG--------RRKITMKDLEEAAS 254
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 80.4 bits (199), Expect = 1e-18
Identities = 44/132 (33%), Positives = 78/132 (59%), Gaps = 8/132 (6%)
Query: 19 IFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
IFIDE+D++ RG+ H+ + ++L++MDG + + II+I AATN P +
Sbjct: 108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN---EGIIVI-AATNRPDVL 163
Query: 77 DEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIAN 134
D A R RF+++V + LP+ R Q+L + + V + ++D I++ G++G+D+AN
Sbjct: 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLAN 223
Query: 135 LARDAAMMSIRR 146
L +AA+ + R
Sbjct: 224 LVNEAALFAARG 235
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 70.7 bits (174), Expect = 9e-15
Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 26/156 (16%)
Query: 19 IFIDEVDSLCSMRGS------DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH 72
+FIDE+D++ RGS D E E + +LL++MDG I+++ AATN
Sbjct: 127 VFIDEIDAVGRKRGSGVGGGND-EREQTLN---QLLVEMDGFEKD---TAIVVM-AATNR 178
Query: 73 PWDI-DEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTG 129
P DI D A R RF++++ I P+ R Q+L + G + ++D ++K G+ G
Sbjct: 179 P-DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVG 237
Query: 130 SDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID 165
+D+ NL +AA+++ R ++I +D++
Sbjct: 238 ADLENLLNEAALLAAREG--------RRKITMKDLE 265
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 70.7 bits (174), Expect = 1e-14
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 26/156 (16%)
Query: 19 IFIDEVDSLCSMRGS------DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNH 72
+FIDE+D++ RG+ D E E + +LL++MDG +S + II++ AATN
Sbjct: 112 VFIDEIDAVGRHRGAGLGGGHD-EREQTLN---QLLVEMDGFDSK---EGIIVM-AATNR 163
Query: 73 PWDI-DEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTG 129
P DI D A R RF+K++ + P+ R ++L + + +++ I+K G+ G
Sbjct: 164 P-DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVG 222
Query: 130 SDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDID 165
+D+ NL +AA+++ R +I +D +
Sbjct: 223 ADLENLVNEAALLAAREG--------RDKITMKDFE 250
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 68.6 bits (168), Expect = 3e-14
Identities = 21/155 (13%), Positives = 54/155 (34%), Gaps = 14/155 (9%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
S + +D+++ L S LL+ + + + ++I+ T+ D+
Sbjct: 126 SCVVVDDIERLLDYVPIG--PRFSNLVLQALLVLLKKAPP---QGRKLLIIGTTSRK-DV 179
Query: 77 DEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYT---GSD 131
+ F +++ PN QLL + + I++ ++G G
Sbjct: 180 LQEMEMLNAFSTTIHV--PNIATGEQLLEALELLGNFK-DKERTTIAQQVKGKKVWIGIK 236
Query: 132 IANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL 166
+ + ++ + + A ++E +D
Sbjct: 237 KLLMLIEMSLQMDPEYRVRKFLALLREEGASPLDF 271
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 57.5 bits (140), Expect = 1e-11
Identities = 19/92 (20%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 88 VYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRK 147
+ PNE AR +L + + + ++ KI++++ G +G+++ + +A M ++R +
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65
Query: 148 IMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 179
+ VT++DF A+A+
Sbjct: 66 RV-----------------HVTQEDFEMAVAK 80
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 53.6 bits (130), Expect = 2e-10
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 91 PLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMG 150
P PNE AR +L + + + ++ KI++++ G +G+++ + +A M ++R + +
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRV- 59
Query: 151 QTPAQIKEIKQEDIDLPVTEKDFREAIAR 179
VT++DF A+A+
Sbjct: 60 ----------------HVTQEDFEMAVAK 72
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B*
2dvw_B*
Length = 83
Score = 44.6 bits (106), Expect = 6e-07
Identities = 12/90 (13%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 94 NEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTP 153
+ + + + + + +D + +G+DI ++ +++ M+++R
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRY---- 57
Query: 154 AQIKEIKQEDIDLPVTEKDFREAIARCRKS 183
V KDF +A K
Sbjct: 58 -------------IVLAKDFEKAYKTVIKK 74
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone,
chaperone-protein binding complex; HET: DNA; 3.80A
{Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/83 (18%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Query: 97 ARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQI 156
R + + + + ++ + + IS++ TG+++ ++ +A M +IR +
Sbjct: 5 GRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR--------- 55
Query: 157 KEIKQEDIDLPVTEKDFREAIAR 179
+++ TEKDF +A+ +
Sbjct: 56 RKV--------ATEKDFLKAVDK 70
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} PDB: 2dzo_B
Length = 82
Score = 40.8 bits (96), Expect = 2e-05
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 17/82 (20%)
Query: 98 RYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIK 157
R + + + D + + +G+ IA + ++A + ++R+
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY-------- 54
Query: 158 EIKQEDIDLPVTEKDFREAIAR 179
+ + D EA A
Sbjct: 55 ---------VILQSDLEEAYAT 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 4e-05
Identities = 36/195 (18%), Positives = 55/195 (28%), Gaps = 73/195 (37%)
Query: 44 KAELLIQMDGLNSSLYEDKIIMI-L--AATN-----HPWDIDEAFRRRFEK--------- 86
+ ++ ++ NS L K + I L A N P + K
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL-YGLNLTLRKAKAPSGLDQ 404
Query: 87 -RVYIPL----PNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAM 141
R IP R+ L V FH S +L + + +D
Sbjct: 405 SR--IPFSERKLKFSNRF--LP---------VASPFH--SHLLVPAS----DLINKDLVK 445
Query: 142 MSIRRKIMGQTPAQIKEIKQEDIDLPV--TE--KDFR-------EAIARC--RKSV---T 185
++ +DI +PV T D R E I C R V T
Sbjct: 446 NNV-------------SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 186 AHDLSKYDSWMNEFG 200
+ + +FG
Sbjct: 493 TTQFKA--THILDFG 505
Score = 30.0 bits (67), Expect = 0.61
Identities = 33/217 (15%), Positives = 71/217 (32%), Gaps = 62/217 (28%)
Query: 22 DEVDSL-CSMRGSDSEHEASRR------FKAELLIQ---MDGLNSSLYED------KIIM 65
+++ +L + + + A ++ + NS+L+ +++
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 66 ILA---ATNHPWDIDEAFRRRFEKRVYIPLPNEW---ARYQLLTLCLEGVVIDVNLDFHK 119
I T+ ++ E R ++ Y L + + L L +D F +
Sbjct: 159 IFGGQGNTDDYFE--E-LRDLYQ--TYHVLVGDLIKFSAETLSELIRT--TLDAEKVFTQ 211
Query: 120 ---ISKMLEG-YTGSDIANLARDAAMMS-------------IRRKIMGQTPAQIKEIKQE 162
I + LE D L + +S + K++G TP +++
Sbjct: 212 GLNILEWLENPSNTPDKDYLL--SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY--- 266
Query: 163 DIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWMNEF 199
+ A + VTA +++ DSW F
Sbjct: 267 ----------LKGATGHSQGLVTAVAIAETDSW-ESF 292
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.001
Identities = 26/176 (14%), Positives = 53/176 (30%), Gaps = 46/176 (26%)
Query: 38 EASRRFKAELLIQMDG----LNSSLY--EDKIIMILAATNHPWDIDEAFRRRFEKRVYIP 91
+ +K + +MD LN + ++ +L + ID + R + I
Sbjct: 169 DVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY--QIDPNWTSRSDHSSNIK 224
Query: 92 LPNEWARYQLLTL--------CLEGVVID-VN-------LDFHKISKMLEGYTGSDIANL 135
L + +L L CL +V+ V + K+L T
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKAWNAFNLS--CKIL--LT------- 271
Query: 136 ARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTAHDLSK 191
R + + T I + + +T + + + + DL +
Sbjct: 272 TRFK---QVTDFLSAATT---THISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPR 320
Score = 36.0 bits (82), Expect = 0.007
Identities = 29/232 (12%), Positives = 66/232 (28%), Gaps = 79/232 (34%)
Query: 6 RTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDK--- 62
PS R ++I++ D L + +++ SR + ++ L +L E +
Sbjct: 101 EQRQPSMMTR---MYIEQRDRLYNDNQVFAKYNVSRL---QPYLK---LRQALLELRPAK 151
Query: 63 -II---M------ILAATNHPWDI--DEAFRRRFEKRVYIPLPNEWARYQLLTL----CL 106
++ + +A D+ + + + +++ W L L
Sbjct: 152 NVLIDGVLGSGKTWVAL-----DVCLSYKVQCKMDFKIF------W-----LNLKNCNSP 195
Query: 107 EGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDL 166
E V+ + ++I + R +I I+ E L
Sbjct: 196 ETVLEMLQKLLYQIDPNW------------------TSRSDHSSNIKLRIHSIQAELRRL 237
Query: 167 PVTEKDFREAI----------------ARCRKSVTAHDLSKYDSWMNEFGSH 202
+ K + + C+ +T D +H
Sbjct: 238 -LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Score = 27.5 bits (60), Expect = 3.4
Identities = 16/133 (12%), Positives = 40/133 (30%), Gaps = 31/133 (23%)
Query: 23 EVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRR 82
E+D + S + R L + + + + +L N+ + + +
Sbjct: 50 EIDHII---MSKDAVSGTLR----LFWTLLSKQEEMVQKFVEEVLR-INYKF-LMSPIKT 100
Query: 83 RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLARDAAMM 142
+ + R +L D +K N++R +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYN------------DNQVFAKY----------NVSRLQPYL 138
Query: 143 SIRRKIMGQTPAQ 155
+R+ ++ PA+
Sbjct: 139 KLRQALLELRPAK 151
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 34.7 bits (79), Expect = 0.012
Identities = 27/185 (14%), Positives = 51/185 (27%), Gaps = 29/185 (15%)
Query: 19 IFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWD--- 75
+FIDE L + E + + + D +++ILA +
Sbjct: 134 LFIDEAYYLYRPDNER-------DYGQEAIEILLQV-MENNRDDLVVILAGYADRMENFF 185
Query: 76 -IDEAFRRRFEKRVYIPL--PNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYT---- 128
+ FR R + P E L + + + + +
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAE-TALRAYIGLRRNQPH 244
Query: 129 ---GSDIANLARDAAMMSIRRKIMGQ----TPAQIKEIKQEDIDLPVTEKDFREAIARCR 181
I N A + R + I +EDI + F+ + R
Sbjct: 245 FANARSIRNALDRARLRQANRLFTASSGPLDARALSTIAEEDIR---ASRVFKGGLDSER 301
Query: 182 KSVTA 186
++ A
Sbjct: 302 RAAEA 306
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 28.7 bits (65), Expect = 1.4
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Query: 11 SNSY---RVSTIFIDEVDSLCSMRGSDSEH 37
+N+Y RV+ + +E+DS +G +S+
Sbjct: 236 ANTYLALRVA--YFNELDSYAESQGLNSKQ 263
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 28.7 bits (65), Expect = 1.5
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 11 SNSY---RVSTIFIDEVDSLCSMRGSDSE 36
+N+Y RV+ + +E+D+ R +S
Sbjct: 207 ANTYLALRVA--YFNELDTYAESRKLNSH 233
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 27.5 bits (61), Expect = 3.7
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 17/95 (17%)
Query: 19 IFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78
I +DEVD M G D + + +IL
Sbjct: 152 IIMDEVD---GMSGGDR--GGVGQL-------AQFCRKT----STPLILICNERNLPKMR 195
Query: 79 AFRRRFEKRVYIPLPNEWARYQLLTLC-LEGVVID 112
F R + + +L+T+ E +D
Sbjct: 196 PFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD 230
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 4.8
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 108 GVVIDVNL--DFHKISKMLEGYTGSDIANLARDAAMMS-------IRRKIMGQTPAQIKE 158
G+V D S G A + + R++ + AQIK+
Sbjct: 1203 GIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKD 1262
Query: 159 IKQEDID 165
+ +++
Sbjct: 1263 WVENELE 1269
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 26.9 bits (60), Expect = 5.5
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASRR-FKAELLIQMDGLN-----SSLYEDKIIMILAAT 70
+FIDE+D +C +G S + SR + +LL ++G + D I+ I +
Sbjct: 252 GIVFIDEIDKICK-KGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGA 310
Query: 71 NH---PWDIDEAFRRRFEKRV 88
P D+ + R RV
Sbjct: 311 FQVARPSDLIPELQGRLPIRV 331
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 5.7
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 35 SEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDEAFRRRFEK 86
E E+ R+++ E ++ L+++ + A D++E +R+ E+
Sbjct: 82 QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK---DLEEWNQRQSEQ 130
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein;
alpha-beta-alpha sandwich, structural genomics, PSI-2;
HET: MSE; 2.05A {Thermoplasma acidophilum}
Length = 166
Score = 26.2 bits (57), Expect = 6.6
Identities = 6/68 (8%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 110 VIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVT 169
+ + + K Y G + DA ++++ ++ + D+++ +
Sbjct: 100 IFSLEFNGQKAHTKRFFYGGKTVIEEESDARILTVAPGVIEAKDLG-TTPEIRDLEIGQS 158
Query: 170 EKDFREAI 177
+ +
Sbjct: 159 RIKITKFV 166
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 94
Score = 25.1 bits (55), Expect = 7.5
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 143 SIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRK 182
+ + +T +I+ + +D + +E I + R
Sbjct: 37 EKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARH 76
>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine
triphosphate pyrophosphohydrolase, inosine
triphosphatase deficiency, ITP, IMP; 1.09A {Homo
sapiens} SCOP: c.51.4.1 PDB: 2j4e_A* 2i5d_A
Length = 196
Score = 25.9 bits (58), Expect = 8.5
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 23/64 (35%)
Query: 139 AAMMSIRRKIMGQT-------------------PAQIKEIKQEDIDLPVTEKDFRE-AIA 178
+M ++G+ + + IDLP + + E +I
Sbjct: 1 GSMA---ASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQ 57
Query: 179 RCRK 182
+C++
Sbjct: 58 KCQE 61
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 25.8 bits (56), Expect = 8.8
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 66 ILAATNHPWDIDEAFRRRFEKRVYIPLPNEWAR 98
I T P +D+ R K +I R
Sbjct: 126 IFVLTQGPKLLDQNLRTLVRKHYHIASNKMGMR 158
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 26.2 bits (58), Expect = 9.3
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 15/118 (12%)
Query: 75 DIDEAFRRRFEKRV-YIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIA 133
EA F K+ + E + L ++ N ++ + G + IA
Sbjct: 262 VNKEAVIAEFRKQGAHFLSDAEAVQ-------LGKFILRPN---GSMNPAIVGKSVQHIA 311
Query: 134 NLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPV----TEKDFREAIARCRKSVTAH 187
NLA R I +T K + P+ T + ++EA +
Sbjct: 312 NLAGLTVPADARVLIAEETKVGAKIPYSREKLAPILAFYTAETWQEACELSMDILYHE 369
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan
biosynthesis, riken structural genomics/PR initiative,
RSGI, structural genomics; 1.80A {Thermus thermophilus}
SCOP: c.1.2.4
Length = 254
Score = 26.0 bits (58), Expect = 10.0
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 139 AAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKSVTA 186
+ + + +I + + E+ + P + F+EA+ R SV A
Sbjct: 6 SRVPGVLGEIARKRAS---EVAPYPLPEPPSVPSFKEALLRPGLSVIA 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.391
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,209,775
Number of extensions: 192507
Number of successful extensions: 602
Number of sequences better than 10.0: 1
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 56
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)