RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3540
(202 letters)
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 143 bits (363), Expect = 2e-43
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 25/166 (15%)
Query: 17 STIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW 74
+FIDE+D++ RGS ++ + +LL++MDG D I+++AATN P
Sbjct: 103 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK----DTAIVVMAATNRPD 158
Query: 75 DIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDI 132
+D A R RF++++ I P+ R Q+L + G + ++D ++K G+ G+D+
Sbjct: 159 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADL 218
Query: 133 ANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA 178
NL +AA+++ R +T KD EA +
Sbjct: 219 ENLLNEAALLAAREGRR-----------------KITMKDLEEAAS 247
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 137 bits (347), Expect = 5e-41
Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 25/167 (14%)
Query: 17 STIFIDEVDSLCSMRGS--DSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW 74
IFIDE+D++ RG+ H+ + ++L++MDG ++ I+++AATN P
Sbjct: 106 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG----NEGIIVIAATNRPD 161
Query: 75 DIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDI 132
+D A R RF+++V + LP+ R Q+L + + V + ++D I++ G++G+D+
Sbjct: 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADL 221
Query: 133 ANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 179
ANL +AA+ + R V+ +F +A +
Sbjct: 222 ANLVNEAALFAARGNKR-----------------VVSMVEFEKAKDK 251
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 106 bits (266), Expect = 4e-29
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 9/165 (5%)
Query: 19 IFIDEVDSLCSMRG--SDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
+F DE+DS+ RG A+ R ++L +MDG+++ K + I+ ATN P I
Sbjct: 104 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST----KKNVFIIGATNRPDII 159
Query: 77 DEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIAN 134
D A R R ++ +YIPLP+E +R +L L + ++D ++KM G++G+D+
Sbjct: 160 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 219
Query: 135 LARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 179
+ + A ++IR I + + +E + + V E D I R
Sbjct: 220 ICQRACKLAIRESIESEI-RRERERQTNPSAMEVEEDDPVPEIRR 263
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 85.8 bits (211), Expect = 4e-21
Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 7/170 (4%)
Query: 12 NSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATN 71
+ IFIDE+D++ R R ++ Q+ L L + ++++AATN
Sbjct: 94 EKNAPAIIFIDELDAIAPKREKTHGEVERR-----IVSQLLTLMDGLKQRAHVIVMAATN 148
Query: 72 HPWDIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTG 129
P ID A RR RF++ V I +P+ R ++L + + + + ++D +++ G+ G
Sbjct: 149 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 208
Query: 130 SDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 179
+D+A L +AA+ +IR+K+ + L VT DFR A+++
Sbjct: 209 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 258
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 67.8 bits (165), Expect = 3e-14
Identities = 21/169 (12%), Positives = 50/169 (29%), Gaps = 44/169 (26%)
Query: 17 STIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDI 76
I ID + ++ G ++ R +LL + + +S + +++A+ N P
Sbjct: 184 RVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAAS----RGCVVIASLN-PTSN 238
Query: 77 DEAFRR------RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGS 130
D+ R + + +Q+LT EG+
Sbjct: 239 DDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQ----------------RLTH 282
Query: 131 DIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 179
+ + ++++I ++ +AI
Sbjct: 283 TLQTSYGEHSVLTIHTSKQ-----------------SGGKQASGKAIQT 314
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 58.8 bits (141), Expect = 3e-11
Identities = 17/192 (8%), Positives = 44/192 (22%), Gaps = 30/192 (15%)
Query: 12 NSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQM------DGLNSSLYEDKIIM 65
Y E M + + KI
Sbjct: 91 TPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINS 150
Query: 66 ILAATNHPWDIDEAFRR--RFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKM 123
L + R + + + L TL G+ D+ L +
Sbjct: 151 YLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRL---YNREG 207
Query: 124 LEGYTGSDIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIARCRKS 183
++ Y+ + +++ + + V+ K+ + + R +
Sbjct: 208 VKLYSSLETPSISPKETLEKELNR-------------------KVSGKEIQPTLERIEQK 248
Query: 184 VTAHDLSKYDSW 195
+ + + +
Sbjct: 249 MVLNKHQETPEF 260
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 50.3 bits (119), Expect = 2e-08
Identities = 20/146 (13%), Positives = 50/146 (34%), Gaps = 9/146 (6%)
Query: 18 TIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDID 77
+ +D+++ L S LL+ + + ++I+ T+ +
Sbjct: 103 CVVVDDIERLLDYVPIGPRF--SNLVLQALLVLLKKAPPQ---GRKLLIIGTTSRKDVLQ 157
Query: 78 EA-FRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLDFHKISKMLEGYTGSDIANLA 136
E F +++P QLL LE + + + I++ ++G
Sbjct: 158 EMEMLNAFSTTIHVPNIAT--GEQLLEA-LELLGNFKDKERTTIAQQVKGKKVWIGIKKL 214
Query: 137 RDAAMMSIRRKIMGQTPAQIKEIKQE 162
MS++ + + +++E
Sbjct: 215 LMLIEMSLQMDPEYRVRKFLALLREE 240
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 44.8 bits (105), Expect = 2e-06
Identities = 29/199 (14%), Positives = 67/199 (33%), Gaps = 25/199 (12%)
Query: 14 YRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSS-----LYEDKIIMILA 68
+ +FIDE+D +C + + +LL ++G S + D I+ I +
Sbjct: 114 EQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 173
Query: 69 A---TNHPWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVV---------IDVNLD 116
P D+ + R RV + + ++LT + VN+
Sbjct: 174 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIA 233
Query: 117 FHKISKMLEGYTGSDIANLARDAAMMSIRR---KIMGQTPAQIKEIKQEDIDLPVTEKDF 173
F + + + + ++M + ++ + ++ +
Sbjct: 234 FTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVN--IDAAYV 291
Query: 174 REAIARCRKSVTAHDLSKY 192
+A+ + V DLS++
Sbjct: 292 ADAL---GEVVENEDLSRF 307
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 44.3 bits (104), Expect = 3e-06
Identities = 13/144 (9%), Positives = 37/144 (25%), Gaps = 20/144 (13%)
Query: 6 RTNVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIM 65
+ + S I+ +D+L + ++ +
Sbjct: 211 KGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQ------------IFPP 258
Query: 66 ILAATNHPWDIDEAFRR--RFEKRVYIPLPNEWAR-YQLLTLCLEGVVIDVNLDFHKISK 122
+ N + RF K++ + + LE +I + +
Sbjct: 259 GIVTMN---EYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIA--LLLM 313
Query: 123 MLEGYTGSDIANLARDAAMMSIRR 146
++ ++ A + + R
Sbjct: 314 LIWYRPVAEFAQSIQSRIVEWKER 337
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 31.3 bits (69), Expect = 0.060
Identities = 22/179 (12%), Positives = 52/179 (29%), Gaps = 26/179 (14%)
Query: 8 NVPSNSYRVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMIL 67
+ + +DE S+ S +E + E + DG + + + +
Sbjct: 125 DNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG-VNRIGFLLVASDV 183
Query: 68 AATNHPWDIDEAFRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLD---FHKISKML 124
A ++ + + ++++P Y +L E + D + IS +
Sbjct: 184 RALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY 243
Query: 125 EGYTGS-----DIANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIA 178
G + A M+ ++E R+A++
Sbjct: 244 GEDKGGDGSARRAIVALKMACEMAEAMG-----------------RDSLSEDLVRKAVS 285
>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500
{Pectobacterium atrosepticum [TaxId: 29471]}
Length = 127
Score = 26.7 bits (58), Expect = 1.2
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 162 EDIDLPVTEKDFREAIARCRKSVTAHDLSKYDSWM 196
+D++ D A R K++T +D++ D
Sbjct: 4 DDVNQADVLADVTAAFYRYEKALTGNDVAVLDELF 38
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 26.8 bits (58), Expect = 1.5
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 15 RVSTIFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPW 74
IF+D+VD++ + + F +L + +M+ AT
Sbjct: 162 HFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGE----ARGCLMVSTATAKKG 217
Query: 75 DIDEAFRR 82
E FR+
Sbjct: 218 KKAELFRQ 225
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 26.7 bits (57), Expect = 1.9
Identities = 11/168 (6%), Positives = 43/168 (25%), Gaps = 16/168 (9%)
Query: 19 IFIDEVDSLCSMRGSDSEHEASRRFKAELLIQMDGLNSSLYEDKIIMILAATNHPWDIDE 78
+ ++ + + + G + I ++ ++ ++
Sbjct: 114 LLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 173
Query: 79 A----FRRRFEKRVYIPLPNEWARYQLLTLCLEGVVIDVNLD---FHKISKMLEGYTGSD 131
+ + + + +L + + + + I+ + T D
Sbjct: 174 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLD 233
Query: 132 IANLARDAAMMSIRRKIMGQTPAQIKEIKQEDIDLPVTEKDFREAIAR 179
A+ + R Q++ + +D R++
Sbjct: 234 TNRGDARLAIDILYRSAY---------AAQQNGRKHIAPEDVRKSSKE 272
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId:
562]}
Length = 174
Score = 25.1 bits (55), Expect = 5.7
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 110 VIDVNLDFHKISKMLEGYTGSDIANLARDAAMMSIRRKIMGQTPAQ--IKEIKQEDIDLP 167
I+ +F K + E Y G+ LAR+ A + +KI A ++ + DI+
Sbjct: 2 AINFTTEFLK--SVSEKY-GAKAEQLAREMAGQAKGKKIRNVEEALKTYEKYR-ADINKK 57
Query: 168 VTEKDFREAIARCRKSVTAHDLSK 191
+ KD R AIA +SV D+S
Sbjct: 58 INAKD-RAAIAAALESVKLSDISS 80
>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 387
Score = 24.5 bits (53), Expect = 9.5
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 1 MREVQRTNVPSNSYRVSTI 19
+ E +R +P+ S+R++ I
Sbjct: 14 LLEYRRQGIPNESWRITKI 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.391
Gapped
Lambda K H
0.267 0.0495 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 780,491
Number of extensions: 36472
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 20
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)