BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3543
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 144/236 (61%), Gaps = 8/236 (3%)
Query: 12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71
+VV AID+NT AN VYK+NFP T L + I+ ++EE + +S D+ILMSPPCQPFTR G
Sbjct: 27 QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGR 86
Query: 72 QKDIADARCTALSYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130
Q D+ D+R + ++++ +P + L + +LLENVKGFE S +RDL+ + GF++QEF
Sbjct: 87 QGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENXGFQYQEF 146
Query: 131 LLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANTCNPLLSRM 190
LLSPT G+PNSR RY+LIAK F+ +++ E PK++ + N S +
Sbjct: 147 LLSPTSLGIPNSRLRYFLIAKL------QSEPLPFQAPGQVLMEFPKIEIHRKNQQDSDL 200
Query: 191 TLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEG 246
++ + D D+ +YL+ K LLR + DIV + CFTK Y Y EG
Sbjct: 201 SVKMLKDFLEDDTDV-NQYLLPPKSLLRYALLLDIVQPTXRRSVCFTKGYGSYIEG 255
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 137/235 (58%), Gaps = 19/235 (8%)
Query: 12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71
E+V A+DINT ANSVYKHNFP TNL RNIQ + + I + D ILMSPPCQPFTR G
Sbjct: 28 EIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFTRNGK 87
Query: 72 QKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131
D D R + YLI + + ++ +L+ENVKGFE S R+L L F +QEFL
Sbjct: 88 YLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFL 147
Query: 132 LSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANTCNPLLSRMT 191
L P+ GVPNSR RYY A+R + ++ F+ E++T LPK +
Sbjct: 148 LCPSTVGVPNSRLRYYCTARR------NNLTWPFKRRDEIITRLPK-------DFGVPHS 194
Query: 192 LHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEG 246
L I++ D+ ++LV +K +LR VFDI + + CFTKAYTHYA+G
Sbjct: 195 LESIIEE-----DVDEKFLVPEK-MLRCAKVFDICYKTSKRSCCFTKAYTHYADG 243
>pdb|3QV2|A Chain A, Structure Analysis Of Entamoeba Histolytica
Methyltransferase Ehmeth
Length = 327
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 37/235 (15%)
Query: 18 DINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL--QKDI 75
DIN AN +Y NF + ++ +N+ S SI++I +++ + MSPPCQP+ + + KDI
Sbjct: 42 DINEIANKIYSKNF-KEEVQVKNLDSISIKQIESLNCNTWFMSPPCQPYNNSIMSKHKDI 100
Query: 76 ADARCTALSYLIETIPAIPSL----QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131
D R ++ +L I +P L + + +ENV F+ S I ++L + + ++ +
Sbjct: 101 NDPRAKSVLHLYRDI--LPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDII 158
Query: 132 LSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANTCNPLLSRMT 191
SP G+PNSRTRYY++A+ +P F+ +L E + +N
Sbjct: 159 CSPIDIGIPNSRTRYYVMARLTP----------FKNEIQLHQEKESMISN---------- 198
Query: 192 LHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEG 246
+ ++ Y + +L++ +FDIV T CFTK+YT EG
Sbjct: 199 --------YLDNNVNESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSYTKIVEG 245
>pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
Length = 327
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILM 59
RL+ + E V + + + A VY+ NF P ++ + E D++
Sbjct: 25 RLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDIT-------QVNEKTIPDHDILCA 77
Query: 60 SPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLI 116
PCQ F+ +G QK D+R T L + I I + + +ENVK F + + +++
Sbjct: 78 GFPCQAFSISGKQKGFEDSRGT-LFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVV 136
Query: 117 TSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+ + + F +L+ +G+P R R Y+I R+
Sbjct: 137 KNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRN 173
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
Oligonucleotide Containing 2-Aminopurine As A Target
Base (Gpgc:gmgc) And Sah
Length = 327
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILM 59
RL+ + E V + + + A VY+ NF P ++ + E D++
Sbjct: 25 RLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDIT-------QVNEKTIPDHDILCA 77
Query: 60 SPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLI 116
PCQ F+ +G QK D+R T L + I I + + +ENVK F + + +++
Sbjct: 78 GFPCQAFSISGKQKGFEDSRGT-LFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVV 136
Query: 117 TSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+ + + F +L+ +G+P R R Y+I R+
Sbjct: 137 KNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRN 173
>pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
And S-Adenosyl-L-Homocysteine
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Unmodified Dna And Adohcy
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
Dna And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Dna Containing 4'-Thio-2'deoxycytidine At The Target
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|9MHT|A Chain A, Cytosine-specific Methyltransferase Hhai/dna Complex
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Hemimethylated Dna Containing
5,6-Dihydro-5-Azacytosine At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
Formed In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
Covalent Complex With Dna Methyltransferase
pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
Abasic South Carbocyclic Sugar At Its Target Site
pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
Oligonucleotide Containing 2-Aminopurine Adjacent To The
Target Base (Pcgc:gmgc) And Sah
pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Opposite To The Target Base (
Gcgc:gmpc) And Sah
pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Outside The Recognition
Sequence (Paired With G) And Sah
pdb|2HR1|A Chain A, Ternary Structure Of Wt M.hhai C5-cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
pdb|1HMY|A Chain A, Crystal Structure Of The Hhai Dna Methyltransferase
Complexed With S- Adenosyl-L-Methionine
pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing A
Propane Diol In Place Of The Deoxycytidine Residue
Targeted For Methylation
Length = 327
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILM 59
RL+ + E V + + + A VY+ NF P ++ + E D++
Sbjct: 25 RLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDIT-------QVNEKTIPDHDILCA 77
Query: 60 SPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLI 116
PCQ F+ +G QK D+R T L + I I + + +ENVK F + + +++
Sbjct: 78 GFPCQAFSISGKQKGFEDSRGT-LFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVV 136
Query: 117 TSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+ + + F +L+ +G+P R R Y+I R+
Sbjct: 137 KNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRN 173
>pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With
13mer Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILM 59
RL+ + E V + + + A VY+ NF P ++ + E D++
Sbjct: 25 RLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDIT-------QVNEKTIPDHDILCA 77
Query: 60 SPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLI 116
PCQ F+ G QK D+R T L + I I + + +ENVK F + + +++
Sbjct: 78 GFPCQAFSIQGKQKGFEDSRGT-LFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVV 136
Query: 117 TSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+ + + F +L+ +G+P R R Y+I R+
Sbjct: 137 KNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRN 173
>pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILM 59
RL+ + E V + + + A VY+ NF P ++ + E D++
Sbjct: 25 RLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDIT-------QVNEKTIPDHDILCA 77
Query: 60 SPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLI 116
PCQ F+ +G QK D+R T L + I I + + ++NVK F + + +++
Sbjct: 78 GFPCQAFSISGKQKGFEDSRGT-LFFDIARIVREKKPKVVFMQNVKNFASHDNGNTLEVV 136
Query: 117 TSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+ + + F +L+ +G+P R R Y+I R+
Sbjct: 137 KNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRN 173
>pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILM 59
RL+ + E V + + + A VY+ NF P ++ + E D++
Sbjct: 25 RLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDIT-------QVNEKTIPDHDILCA 77
Query: 60 SPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLI 116
PCQ F+ +G QK D+R T L + I I + + +ENVK F + + +++
Sbjct: 78 GFPCQAFSISGKQKGFEDSRGT-LFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVV 136
Query: 117 TSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+ + + F +L+ +G+P R Y+I R+
Sbjct: 137 KNTMNELDYSFHAKVLNALDYGIPQKRENIYMICFRN 173
>pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILM 59
RL+ + E V + + + A VY+ NF P ++ + E D++
Sbjct: 25 RLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDIT-------QVNEKTIPDHDILCA 77
Query: 60 SPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLI 116
PCQ F+ +G QK D+R T L + I I + + +ENVK F + + +++
Sbjct: 78 GFPCQAFSISGKQKGFEDSRGT-LFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVV 136
Query: 117 TSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+ + + F +L+ +G+P R Y+I R+
Sbjct: 137 KNTMNELDYSFHAKVLNALDYGIPQKNERIYMICFRN 173
>pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILM 59
RL+ + E V + + + A VY+ NF P ++ + E D++
Sbjct: 25 RLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDIT-------QVNEKTIPDHDILCA 77
Query: 60 SPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLI 116
PCQ F+ +G QK D+R T L + I I + + + NVK F + + +++
Sbjct: 78 GFPCQAFSISGKQKGFEDSRGT-LFFDIARIVREKKPKVVFMANVKNFASHDNGNTLEVV 136
Query: 117 TSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+ + + F +L+ +G+P R R Y+I R+
Sbjct: 137 KNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRN 173
>pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
Length = 327
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILM 59
RL+ + E V + + + A VY+ NF P ++ + E D++
Sbjct: 25 RLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDIT-------QVNEKTIPDHDILCA 77
Query: 60 SPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLI 116
PCQ F+ +G QK D+R T L + I I + + +ENVK F + + +++
Sbjct: 78 GFPCQAFSISGKQKGFEDSRGT-LFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVV 136
Query: 117 TSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+ + + F +L+ +G+P R Y+I R+
Sbjct: 137 KNTMNELDYSFHAKVLNALDYGIPQKREAIYMICFRN 173
>pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
Sequence Discrimination Of Dna Methyltransferase M.Hhai
Length = 327
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILM 59
RL+ + E V + + + A VY+ NF P ++ + E D++
Sbjct: 25 RLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDIT-------QVNEKTIPDHDILCA 77
Query: 60 SPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKG---FEGSRSRDLI 116
PCQ F+ +G QK D+R T L + I I + + +ENVK + + +++
Sbjct: 78 GFPCQAFSISGKQKGFEDSRGT-LFFDIARIVREKKPKVVFMENVKNAASHDNGNTLEVV 136
Query: 117 TSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+ + + F +L+ +G+P R R Y+I R+
Sbjct: 137 KNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRN 173
>pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
Observable Precatalytic Intermediates During Dna
Cytosine Methylation
Length = 327
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILM 59
RL+ + E V + + + A VY+ NF P ++ + E D++
Sbjct: 25 RLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDIT-------QVNEKTIPDHDILCA 77
Query: 60 SPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLI 116
P Q F+ +G QK D+R T L + I I + + +ENVK F + + +++
Sbjct: 78 GFPAQAFSISGKQKGFEDSRGT-LFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVV 136
Query: 117 TSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+ + + F +L+ +G+P R R Y+I R+
Sbjct: 137 KNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRN 173
>pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
Length = 324
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 7/147 (4%)
Query: 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRT 69
++ A + + S Y+ N ++G +I S +E D I+ PPCQ ++
Sbjct: 21 GFRIICANEYDKSIWKTYESNHSAKLIKG-DISKISSDEFPKC--DGIIGGPPCQSWSEG 77
Query: 70 GLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTR---AGFR 126
G + I D R I + + L ENVKG R + + AG+
Sbjct: 78 GSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYD 136
Query: 127 FQEFLLSPTQFGVPNSRTRYYLIAKRS 153
LL+ +GV R R + I R
Sbjct: 137 VHIILLNANDYGVAQDRKRVFYIGFRK 163
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 28/198 (14%)
Query: 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEI-----NAMSPDVILMSPPCQ 64
+V A++I+ A + + NFPR+ ++ + E I N M D I+ PPCQ
Sbjct: 23 GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ 82
Query: 65 PFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKG-----FEGSRSRDLITSM 119
F+ G + + D+R + + + L L ENV G + G R++ ++
Sbjct: 83 GFSSIG-KGNPDDSRNQLYMHFYRLVSELQPL-FFLAENVPGIMQEKYSGIRNKAF--NL 138
Query: 120 LTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLK 179
++ + + +G P RTRY+ I + S + S E+ +PK+
Sbjct: 139 VSGDYDILDPIKVKASDYGAPTIRTRYFFIGVKK--------SLKLDISDEVF--MPKM- 187
Query: 180 ANTCNPLLSRMTLHGILD 197
+P+ + L+G+ D
Sbjct: 188 ---IDPVTVKDALYGLPD 202
>pdb|3UBT|Y Chain Y, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|A Chain A, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|B Chain B, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
Length = 331
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 7/147 (4%)
Query: 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRT 69
++ A + + S Y+ N ++G +I S +E D I+ PP Q ++
Sbjct: 21 GFRIICANEYDKSIWKTYESNHSAKLIKG-DISKISSDEFPKC--DGIIGGPPSQSWSEG 77
Query: 70 GLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTR---AGFR 126
G + I D R I + + L ENVKG R + + AG+
Sbjct: 78 GSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYD 136
Query: 127 FQEFLLSPTQFGVPNSRTRYYLIAKRS 153
LL+ +GV R R + I R
Sbjct: 137 VHIILLNANDYGVAQDRKRVFYIGFRK 163
>pdb|4DKJ|A Chain A, Cpg Specific Methyltransferase In Complex With Target Dna
Length = 403
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 21/128 (16%)
Query: 44 FSIEEINA----MSPDVILMSPPCQPFTRTGLQKDIADARCT--ALSYLIETI------- 90
F I+++N + D+ S PCQ + GLQK I T L + IE I
Sbjct: 112 FDIKKVNKDNFPKNIDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWEIERILEEIKNS 171
Query: 91 ---PAIPSLQCLLLENVKGF---EGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRT 144
+P + LL+ENVK + ++ + L + G++ + +LL+ F +R
Sbjct: 172 FSKEEMP--KYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRE 229
Query: 145 RYYLIAKR 152
R + ++ R
Sbjct: 230 RVFCLSIR 237
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 94 PSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQ 128
P Q L ++ +K +G+R DL T L AGF F+
Sbjct: 268 PEYQILTVDELKEIKGARLPDLNTKKLVDAGFDFK 302
>pdb|2NPM|A Chain A, Crystal Structure Of Cryptosporidium Parvum 14-3-3 Protein
In Complex With Peptide
pdb|2NPM|B Chain B, Crystal Structure Of Cryptosporidium Parvum 14-3-3 Protein
In Complex With Peptide
Length = 260
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 138 GVPNSRTRYYLIAKRSPAAHSSEAS----FCFETSSELMTELPKLKANTCNPLLSRMTLH 193
V + R+ + +I+ HS A C + S++ EL + CN +L+ + H
Sbjct: 79 AVGSRRSSWRIISSVEQKEHSRNAEDASKMCGKYRSKVEAELTDI----CNDILTMLDKH 134
Query: 194 GILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAY 240
I +T P ++ Y D R F + K SS KAY
Sbjct: 135 LIPTATSPDSKVF--YFKMKGDYHRYISEFSTGDSKQSSAEDALKAY 179
>pdb|2CHU|A Chain A, Ceue In Complex With Mecam
pdb|2CHU|B Chain B, Ceue In Complex With Mecam
Length = 296
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 11 LEVVTAIDINTSANSVYKHNFPRTNLRGRN------IQSFSIEEINAMSPDVILMS 60
L+ A+ +N V N P+ + +N +Q E INA+ PD+I++S
Sbjct: 47 LDTFDALKLNDKVVGVPAKNLPKYLQQFKNKPSVGGVQQVDFEAINALKPDLIIIS 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,633,397
Number of Sequences: 62578
Number of extensions: 240875
Number of successful extensions: 613
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 22
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)