BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3543
(250 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7YS61|TRDMT_BOVIN tRNA (cytosine-5-)-methyltransferase OS=Bos taurus GN=TRDMT1 PE=2
SV=1
Length = 391
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 148/282 (52%), Gaps = 53/282 (18%)
Query: 12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71
+VV A+D+NT AN VYK+NFP T L + I+ ++EE + +S ++ILMSPPCQPFTR GL
Sbjct: 28 QVVAAVDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFNMILMSPPCQPFTRIGL 87
Query: 72 QKDIADARCTALSYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130
Q D+ D R + ++++ +P + L + +LLENVKGFE S +RDL+ + GF++QEF
Sbjct: 88 QGDVTDPRTNSFLHILDILPRLQKLPKYILLENVKGFEMSSTRDLLIQTIENCGFQYQEF 147
Query: 131 LLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKAN--------- 181
LLSPT G+PNSR RY+LIAK P F F+ +++ E PK ++
Sbjct: 148 LLSPTSLGIPNSRLRYFLIAKLQPEP------FPFQAPGQVLMEFPKTESEHPPKYAINA 201
Query: 182 -------------------TCN---PLLSRMTLHGILDSTHPS-GDLYRR---------- 208
C+ +L ++ G +D H DL R
Sbjct: 202 EKKTEEKKTGPKICFDSSTQCSGKEAILFKLETAGEIDRKHQQDSDLSVRMLKDFLEDDI 261
Query: 209 ----YLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEG 246
+ + K LLR + DIV + + CFTK Y Y EG
Sbjct: 262 DKHSFFLPPKSLLRYALLLDIVKPTSRRSMCFTKGYGRYIEG 303
>sp|Q4G073|TRDMT_RAT tRNA (cytosine(38)-C(5))-methyltransferase OS=Rattus norvegicus
GN=Trdmt1 PE=2 SV=1
Length = 391
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/286 (37%), Positives = 146/286 (51%), Gaps = 63/286 (22%)
Query: 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQ 72
VV AID++T AN VYKHNFP T+L + I+ S+EE + +S ++ILMSPPCQPFTR GLQ
Sbjct: 29 VVAAIDVSTVANEVYKHNFPHTHLLAKTIEGISLEEFDKLSFNMILMSPPCQPFTRIGLQ 88
Query: 73 KDIADARCTALSYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131
D++D R + Y+++ +P + L + +LLENVKGFE S +R L+ + GF++QEFL
Sbjct: 89 GDMSDRRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRGLLIQTMEACGFQYQEFL 148
Query: 132 LSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELP--------------- 176
LSP+ G+PNSR RY+LIAK CF+ +++ E P
Sbjct: 149 LSPSSLGIPNSRLRYFLIAKL------QSEPLCFQAPGQILMEFPNSGTVQPQEYAVVEE 202
Query: 177 -KLKANTCNP-----------------------------------LLSRMTLHGILDSTH 200
KL+ T P LS L G L+
Sbjct: 203 GKLRVRTREPDVCLDSSSTQCSGQDSILFKHETAADIDRKRQQDSDLSVQMLKGFLE--- 259
Query: 201 PSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEG 246
GD +YL+ K LLR + DIV + + CFTK Y Y EG
Sbjct: 260 -DGDT-AQYLLPAKSLLRYALLLDIVKPTSRRSMCFTKGYGSYIEG 303
>sp|O14717|TRDMT_HUMAN tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens
GN=TRDMT1 PE=1 SV=1
Length = 391
Score = 174 bits (440), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 149/282 (52%), Gaps = 53/282 (18%)
Query: 12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71
+VV AID+NT AN VYK+NFP T L + I+ ++EE + +S D+ILMSPPCQPFTR G
Sbjct: 28 QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGR 87
Query: 72 QKDIADARCTALSYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130
Q D+ D+R + ++++ +P + L + +LLENVKGFE S +RDL+ + GF++QEF
Sbjct: 88 QGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEF 147
Query: 131 LLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKA--------NT 182
LLSPT G+PNSR RY+LIAK F+ +++ E PK+++ +
Sbjct: 148 LLSPTSLGIPNSRLRYFLIAKL------QSEPLPFQAPGQVLMEFPKIESVHPQKYAMDV 201
Query: 183 CNPLLSR-----MTLHG---------ILDSTHPSGDLYRR-------------------- 208
N + + ++ G IL + +++R+
Sbjct: 202 ENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDT 261
Query: 209 ----YLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEG 246
YL+ K LLR + DIV + CFTK Y Y EG
Sbjct: 262 DVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEG 303
>sp|O55055|TRDMT_MOUSE tRNA (cytosine(38)-C(5))-methyltransferase OS=Mus musculus
GN=Trdmt1 PE=2 SV=2
Length = 415
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 146/281 (51%), Gaps = 53/281 (18%)
Query: 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQ 72
VV AID+NT AN VYKHNFP T+L + I+ S+E+ + +S ++ILMSPPCQPFTR GLQ
Sbjct: 29 VVAAIDVNTVANEVYKHNFPHTHLLSKTIEGISLEDFDKLSFNMILMSPPCQPFTRIGLQ 88
Query: 73 KDIADARCTALSYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131
D+ D R T+ Y+++ +P + L + +LLENVKGFE S +R L+ + GF++QEFL
Sbjct: 89 GDMTDPRTTSFLYILDILPRLQKLPKYILLENVKGFEVSSTRGLLIQTIEACGFQYQEFL 148
Query: 132 LSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKL---------KANT 182
LSP+ G+PNSR RY+LIAK F F+ +++ E PK+
Sbjct: 149 LSPSSLGIPNSRLRYFLIAKL------QSEPFPFQAPGQILMEFPKIVTVEPQKYAVVEE 202
Query: 183 CNPLLSRMT--LHGILDSTHPSGD---LYRRYLVSDKD------------LLRRF----- 220
P + R + ST SG L++ V ++D +L+ F
Sbjct: 203 SQPRVQRTGPRICAESSSTQSSGKDTILFKLETVEERDRKHQQDSDLSVQMLKDFLEDGD 262
Query: 221 ---------------HVFDIVNGKASSTNCFTKAYTHYAEG 246
+ DIV + + CFTK Y Y EG
Sbjct: 263 TDEYLLPPKLLLRYALLLDIVKPTSRRSMCFTKGYGSYIEG 303
>sp|Q54JH6|CMT1_DICDI DNA (cytosine-5)-methyltransferase OS=Dictyostelium discoideum
GN=dnmA PE=1 SV=1
Length = 379
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 130/268 (48%), Gaps = 28/268 (10%)
Query: 4 LSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63
L +V+ + DINT+AN YK+ F + + ++I+S+S+EE+ + LMSPPC
Sbjct: 20 LQESGVDFQVIQSFDINTNANLNYKYTFNEDSSQ-KSIESYSVEELEGFKANAWLMSPPC 78
Query: 64 QPFTRTGLQKDIADARCTALSYLIETIPAIPSLQC-LLLENVKGFE---GSRSRDLITSM 119
QPFTR GLQKD D R + +L++ + I +L+ENV GF S +RD +
Sbjct: 79 QPFTRLGLQKDDQDNRTNSFFHLLDVLTKIKDPPTYILIENVFGFAKKGSSNTRDHLLDT 138
Query: 120 LTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAH-SSEASFCFETSSE-------- 170
L + + FQEF LSP QFG+ N R RY+ IAKR+ + E E E
Sbjct: 139 LIKMNYSFQEFHLSPQQFGLANQRLRYFCIAKRNGKLNFKKEQDKHNEKVDENKLNNNSN 198
Query: 171 ------------LMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLR 218
++ +P +T L + D +LY +Y V LL
Sbjct: 199 NNNEQNKYDNLKILDHIPGYDFHTT--LEECDEISNYFDKDLTDDELYEKYKVPHNLLLS 256
Query: 219 RFHVFDIVNGKASSTNCFTKAYTHYAEG 246
+ +FDI + ++NC TK+Y + EG
Sbjct: 257 KGMLFDIKQKDSKTSNCVTKSYGKFIEG 284
>sp|P40999|PMT1M_SCHPO tRNA (cytosine(38)-C(5))-methyltransferase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pmt1 PE=1 SV=1
Length = 330
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 21/237 (8%)
Query: 12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71
++V AIDIN AN +Y N + + +I + + ++ +A + MSP CQPFTR G
Sbjct: 31 DIVCAIDINPQANEIYNLNHGKL-AKHMDISTLTAKDFDAFDCKLWTMSPSCQPFTRIGN 89
Query: 72 QKDIADARCTALSYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130
+KDI D R A ++ +P + +L + +L+ENV+GFE S++ + +L G+ E
Sbjct: 90 RKDILDPRSQAFLNILNVLPHVNNLPEYILIENVQGFEESKAAEECRKVLRNCGYNLIEG 149
Query: 131 LLSPTQFGVPNSRTRYYLIAKRS-PAAHSSEASFCFETSSELMTELPKLKANTCNPLLSR 189
+LSP QF +PNSR+R+Y +A+ + S + F F ++ E+ +++
Sbjct: 150 ILSPNQFNIPNSRSRWYGLARLNFKGEWSIDDVFQFSEVAQKEGEVKRIR---------- 199
Query: 190 MTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEG 246
D D + Y+V + L + H FDIV +SS CFT+ YTH +G
Sbjct: 200 -------DYLEIERD-WSSYMVLESVLNKWGHQFDIVKPDSSSCCCFTRGYTHLVQG 248
>sp|P45000|MTH5_HAEIN Modification methylase HindV OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=hindVM PE=3 SV=1
Length = 304
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 10/169 (5%)
Query: 10 SLEVVTAIDINTSANSVYKHNF--PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFT 67
E+ A + A +YK+NF P N+ RN + ++E+I SPD+I+ PPCQ F+
Sbjct: 21 GFEICAAFENWEKAIEIYKNNFSHPIYNIDLRN-EKEAVEKIKKYSPDLIMGGPPCQDFS 79
Query: 68 RTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRF 127
G ++DI+ R L+Y I + ++ENV+ + S I + G+
Sbjct: 80 SAG-KRDISLGRAD-LTYSFANIVCNIRPKWFVMENVEQIKKSHILQDIINQFIDFGYGL 137
Query: 128 QEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELP 176
+L + GVP SRTR+ LI K +SE +F T S +++ P
Sbjct: 138 TSAILDASYCGVPQSRTRFSLIGKL-----NSEHNFLIPTLSRKLSDKP 181
>sp|P24581|MTNX_NEILA Cytosine-specific methyltransferase NlaX OS=Neisseria lactamica
GN=nlaXM PE=3 SV=1
Length = 313
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 55 DVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEG---SR 111
D++ PCQPF++ GL+K AD R T L + IE I Q LLENVK +G R
Sbjct: 66 DILSAGFPCQPFSQAGLKKGFADTRGT-LFFDIERILLAKKPQAFLLENVKQLKGHDKGR 124
Query: 112 SRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150
+ +I + L +AG++ +L FG+P +R R YL+
Sbjct: 125 TLQVILAHLQQAGYKVYTEVLKARDFGIPQNRERIYLVG 163
>sp|P19888|MTBA_BACAR Modification methylase BanI OS=Bacillus aneurinolyticus GN=banIM
PE=1 SV=1
Length = 428
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Query: 12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSP-DVILMSPPCQPFTRTG 70
E V + +I+ A Y NF + +G I EI + D +L PCQPF+ G
Sbjct: 31 ECVLSSEIDKKACETYALNF-KEEPQG------DIHEITSFPEFDFLLAGFPCQPFSYAG 83
Query: 71 LQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLITSMLTRAGFRF 127
Q+ D R T L + +E + + LLENV+G + R+ I S L G+
Sbjct: 84 KQQGFGDTRGT-LFFEVERVLRDNRPKAFLLENVRGLVTHDKGRTLKTIISKLEELGYGV 142
Query: 128 QEFLLSPTQFGVPNSRTRYYLIA 150
LL+ + FGVP +R R Y++
Sbjct: 143 SYLLLNSSTFGVPQNRVRIYILG 165
>sp|O30868|MTH2_HAEAE Modification methylase HaeII OS=Haemophilus aegyptius GN=haeIIM
PE=3 SV=1
Length = 318
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 20/157 (12%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSP------DV 56
RL AF + V + + + A S+Y+ NF +IN +SP D+
Sbjct: 17 RLGFEAFGCKNVFSSEWDKYAQSMYEVNFGEK----------PFGDINDISPSDIPDHDI 66
Query: 57 ILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSR 113
+L PCQPF+ G AD R T L + IE I + LLENVK + +
Sbjct: 67 LLAGFPCQPFSIAGKGLGFADTRGT-LFFNIEAILKAKKPKAFLLENVKRLTTHDNGNTF 125
Query: 114 DLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150
+I L + G+ +L+ FG+P R R Y++
Sbjct: 126 KVINDKLNKLGYTVYHKVLNTLDFGLPQKRERIYIVG 162
>sp|P34882|MTAA_SYNP2 Modification methylase AquI subunit alpha OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=aquIMA PE=3
SV=1
Length = 248
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 20/164 (12%)
Query: 7 HAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIE------EINAMSPDVILMS 60
HA A++ + S + + N P T + +I S + + ++N + D+++
Sbjct: 20 HAAGFSTAVAVEQDPSCCNTLRLNMPDTPVIEGDITSITTQVILEAAKVNPLEIDLVIGG 79
Query: 61 PPCQPFTRTGLQKDIADARCT-ALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSM 119
PPCQ F+ G + + D R L +L A+P +C ++ENVKG + ++
Sbjct: 80 PPCQSFSLAGKRMGMDDPRGMLVLEFLRVVREALP--KCFVMENVKGMINWSKGKALEAI 137
Query: 120 LTRAG----FRFQEF-------LLSPTQFGVPNSRTRYYLIAKR 152
+T A + +E+ +L+ FGVP R R +++ R
Sbjct: 138 MTEASQPIKYAGKEYKYAVSYHVLNAADFGVPQFRERVFIVGNR 181
>sp|P00476|MTBS_BPSPR Modification methylase SPRI OS=Bacillus phage SPR PE=3 SV=1
Length = 439
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 55 DVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSR 111
D+++ PCQ F+ G +K D R T +ET+ + + ENVKG +
Sbjct: 70 DLLVGGSPCQSFSVAGHRKGFEDTRGTLFFQYVETLKE-KQPKFFVFENVKGLINHDKGN 128
Query: 112 SRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFE 166
+ +++ + G+R LL+ F VP +R R Y+I R + E S F+
Sbjct: 129 TLNVMAEAFSEVGYRIDLELLNSKFFNVPQNRERLYIIGIREDLIKNEEWSLDFK 183
>sp|P50192|MTHA_HAEPH Modification methylase HphIA OS=Haemophilus parahaemolyticus
GN=hphIAM PE=3 SV=1
Length = 372
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 18/192 (9%)
Query: 16 AIDINTSANSVYKHNFPRTNLRGRNIQSFS----IEEINAMSPDVILMSPPCQPFTRTG- 70
+++I Y+ NFP + +++ + S + IN DV++ PPCQ F+ G
Sbjct: 71 SVEIEPHYCDTYRANFPDHQVLQQDLTTLSDDNLLRHINHRKVDVVIGGPPCQGFSMAGK 130
Query: 71 LQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLITSMLTRAGFRF 127
+ + AD L + + + ++ENV ++R IT R G++
Sbjct: 131 IGRTFADDPRNHLFKEFVRVVKLTQPKFFVMENVARLFTHNSGKTRAEITEQFERLGYKV 190
Query: 128 QEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFC------FETSSELMTELPKLKAN 181
+ +L+ FGVP R+R I ++ E +F + T + + PKL A
Sbjct: 191 KCKVLNAADFGVPQLRSRIVFIGRKD----GGEITFPEPSHTEYNTVGDAIGHFPKLNAG 246
Query: 182 TCNPLLSRMTLH 193
+ +L+ ++
Sbjct: 247 ENSLILNHEAMN 258
>sp|P24600|MTD1_HERAU Modification methylase HgiDI OS=Herpetosiphon aurantiacus GN=hgiDIM
PE=3 SV=1
Length = 309
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Query: 10 SLEVVTAIDINTSANSVYKHNF--PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFT 67
E+V A+D A + Y+ NF P L I + ++ I SP++I+ PPCQ F+
Sbjct: 21 GFEIVAAVDNWRPAINTYQQNFTHPIHELDLAQIDA-AVSLIKTHSPELIIGGPPCQDFS 79
Query: 68 RTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRF 127
G ++D R + + AI +++ENV+ S+ SML G+
Sbjct: 80 SAG-KRDEGLGRANLTLDFAKIVLAIQP-AWVIMENVERARLSKIHQQACSMLGDEGYSL 137
Query: 128 QEFLLSPTQFGVPNSRTRYYLIAKR 152
+ +L + GVP R R ++I R
Sbjct: 138 AQVVLDASLCGVPQLRKRTFVIGHR 162
>sp|P05102|MTH1_HAEPH Modification methylase HhaI OS=Haemophilus parahaemolyticus
GN=hhaIM PE=1 SV=1
Length = 327
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILM 59
RL+ + E V + + + A VY+ NF P ++ + E D++
Sbjct: 25 RLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDIT-------QVNEKTIPDHDILCA 77
Query: 60 SPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLI 116
PCQ F+ +G QK D+R T L + I I + + +ENVK F + + +++
Sbjct: 78 GFPCQAFSISGKQKGFEDSRGT-LFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVV 136
Query: 117 TSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+ + + F +L+ +G+P R R Y+I R+
Sbjct: 137 KNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRN 173
>sp|P25262|MTB1_HERAU Modification methylase HgiBI OS=Herpetosiphon aurantiacus GN=hgiBIM
PE=3 SV=1
Length = 437
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62
RL A V + +I+ A VY+ N+P + +I+++ A DV++ P
Sbjct: 17 RLGLEAVGGVCVASAEIDQQAIKVYRQNWPTDGVDHNLGDITAIQQLPAH--DVLVGGVP 74
Query: 63 CQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSR---DLITSM 119
CQP++ G + D R + +I + I + + ENVKG R+R ++I
Sbjct: 75 CQPWSIAGKNQAFDDPRGQLWADVIRLV-QINQPKAFIFENVKGLVDPRNRLCLEIILDS 133
Query: 120 LTRAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150
G+ LL+ FGV +R R +++
Sbjct: 134 FKDLGYSVFYKLLNSFDFGVAQNRDRVFIVG 164
>sp|O34939|YDIO_BACSU Probable BsuMI modification methylase subunit YdiO OS=Bacillus
subtilis (strain 168) GN=ydiO PE=2 SV=1
Length = 427
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 22/172 (12%)
Query: 16 AIDINTSANSVYKHNFP---------RTNLRGRNIQSFSIEEINAMSP----DVILMSPP 62
A D+N +A SVY+ NF ++ G ++EE D IL PP
Sbjct: 116 ACDLNEAALSVYEKNFSPDFSLNESIEKHINGELGAPLTVEEQRIKDKVKKIDFILAGPP 175
Query: 63 CQPFTRTG---LQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF--EGSRSRDLIT 117
CQ + +KD +A +S +IE PS +L+ENV G + S S
Sbjct: 176 CQGHSDLNNHTRRKDPRNALLMRVSRVIELFQ--PS--SVLVENVPGIIHDKSGSFKEFK 231
Query: 118 SMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSS 169
+ L G+ F E +L+ + GV +R RY++ A ++P + ++ + + T+S
Sbjct: 232 NHLKTQGYYFDEIVLNAEKLGVSQARRRYFIFASKTPVSSLNQINEFYSTNS 283
>sp|P43420|MTB6_BACSF Modification methylase Bsp6I OS=Bacillus sp. (strain RFL6)
GN=bsp6IM PE=3 SV=1
Length = 315
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 11 LEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTG 70
E V A + + +A Y+ NF + L +I++ +E++ DV+L PC F+ G
Sbjct: 24 FETVWANEYDKNAAITYQSNF-KNKLIIDDIRNIKVEDVPDF--DVLLSGFPCTSFSVAG 80
Query: 71 LQKDIADARCTALSYLIETIPAIPSLQCLLLENVK---GFEGSRSRDLITSMLTRAGFRF 127
+K D + L + + Q + LENVK G + + +I L G+
Sbjct: 81 YRKGFEDEKSGDLFFETLRLIVAKKPQVIFLENVKNLVGHDNGNTFKVIYEALESNGYHI 140
Query: 128 QEFLLSPTQFG-VPNSRTRYYLIAKRS 153
+ +L+ FG +P +R R Y++ R+
Sbjct: 141 KYQVLNAKDFGNIPQNRERIYIVGFRN 167
>sp|P25263|MTC1_HERAU Modification methylase HgiCI OS=Herpetosiphon aurantiacus GN=hgiCIM
PE=3 SV=2
Length = 420
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 7 HAFSLEV--VTAIDINTSANSVYKHNF-PRTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63
H +E V + +I+ A + Y NF ++ IQ F S D +L PC
Sbjct: 23 HELGIETACVLSSEIDKHAQTTYAMNFHEQSQGDITQIQDFP-------SFDFLLAGFPC 75
Query: 64 QPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLITSML 120
QPF+ G QK D R T L + IE I + LLENV+G + R+ I L
Sbjct: 76 QPFSYAGKQKGFGDTRGT-LFFEIERILKAYRPKGFLLENVRGLTTHDKGRTFKTILQKL 134
Query: 121 TRAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150
+ +L+ + F VP +R R Y++
Sbjct: 135 HELNYGVY-LILNSSNFQVPQNRLRVYIVG 163
>sp|P25266|MTE1_HERAU Modification methylase HgiEI OS=Herpetosiphon aurantiacus GN=hgiEIM
PE=3 SV=1
Length = 437
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 8/152 (5%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFS-IEEINAMSPDVILMSP 61
RL A V + +I+ A VY N+P T+ N+ + I+++ A DV++
Sbjct: 17 RLGLEAVGGVCVASAEIDQQAIKVYWQNWP-TDGVDHNLGDITQIQQLPAH--DVLVGGV 73
Query: 62 PCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSR---DLITS 118
PCQP++ G + D R + +I + I + + ENVKG R+R ++I
Sbjct: 74 PCQPWSIAGKNQAFDDPRGQLWADVIRLV-QINQPKAFIFENVKGLVDPRNRLCLEIILD 132
Query: 119 MLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150
G+ LL+ FGV +R R +++
Sbjct: 133 SFKDLGYSVFYKLLNSFDFGVAQNRDRVFIVG 164
>sp|P09915|MTBR_BPRH1 Modification methylase Rho11sI OS=Bacillus phage rho11s PE=3 SV=2
Length = 503
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 55 DVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSR 111
D+++ PCQ F+ G +K D R T I+T+ + + ENVKG +
Sbjct: 70 DLLVGGSPCQSFSVAGYRKGFEDTRGTLFFQYIDTLKE-KQPRYFVFENVKGLINHDKGN 128
Query: 112 SRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSE 160
+ +++ + G+R LL+ F VP +R R Y+I R + E
Sbjct: 129 TLNIMAESFSEVGYRIDLELLNSKFFNVPQNRERIYIIGVREDLIENDE 177
>sp|P05302|MTD1_DESNO Modification methylase DdeI OS=Desulfomicrobium norvegicum (strain
DSM 1741 / NCIMB 8310) GN=ddeIM PE=3 SV=1
Length = 415
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 86/195 (44%), Gaps = 25/195 (12%)
Query: 7 HAFSL---EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDV--ILMSP 61
H F + + AI+ + A+ Y N P ++ +I + ++ DV I+ P
Sbjct: 15 HGFKMAGYNSILAIEKDLWASQTYSFNNPNVSVITEDITTLDPGDLKISVSDVDGIIGGP 74
Query: 62 PCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSR------DL 115
PCQ F+ +G +D D R + + + S + ++ENV G +++ D+
Sbjct: 75 PCQGFSLSG-NRDQKDPRNSLFVDFVRFVKFF-SPKFFVMENVLGILSMKTKSRQYVKDI 132
Query: 116 ITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS----------PAAHSSEASFCF 165
I + G++ +L+ +GVP SR R + I +S P + E+ +
Sbjct: 133 IAEEFSNVGYKVCVIILNACDYGVPQSRQRVFFIGLKSDRPLNQQILTPPSKVIESEYT- 191
Query: 166 ETSSELMTELPKLKA 180
+ E +++LP ++A
Sbjct: 192 -SLEEAISDLPVIEA 205
>sp|Q59605|MTB5_NEIGO Modification methylase NgoBV OS=Neisseria gonorrhoeae GN=ngoBVM
PE=3 SV=1
Length = 423
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 93/232 (40%), Gaps = 27/232 (11%)
Query: 6 NHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQP 65
+ + E V +I +A V K N+P G + IE + D++L PCQ
Sbjct: 26 KQSVACECVFTSEIKPAALEVLKQNYPDEVPYGDITK---IETGDIPDFDILLAGFPCQA 82
Query: 66 FTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRD----------L 115
F+ G + D R T L + + I + +LENV+G +D +
Sbjct: 83 FSFAGKRLGFEDTRGT-LFFDVARILKAKKPKGFILENVEGLVTHDRKDSTQKIGRTLTV 141
Query: 116 ITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTEL 175
I L G+ +L+ +FG+P +R R YL + S+ FETS
Sbjct: 142 ILETLEALGYYVSWKVLNAKEFGIPQNRKRIYLT-----GSLKSKPDLSFETSPS----- 191
Query: 176 PKLK--ANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDI 225
PKLK + P S + +L PS +LY + + + H +DI
Sbjct: 192 PKLKNILESGLPTESSPFIKKLLKKFPPS-ELYGKSVKDKRGGKNNIHSWDI 242
>sp|P11408|MTM1_MORSP Modification methylase MspI OS=Moraxella sp. GN=mspIM PE=3 SV=1
Length = 418
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 55 DVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSR 111
D++ PCQPF+ G ++ + + I I L LENV G +
Sbjct: 166 DILCAGFPCQPFSHIGKREGFEHPTQGTMFHEIVRIIETKKTPVLFLENVPGLINHDDGN 225
Query: 112 SRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150
+ +I L G++ +L + FG+P R R+YL+A
Sbjct: 226 TLKVIIETLEDMGYKVHHTVLDASHFGIPQKRKRFYLVA 264
>sp|P25264|MTC2_HERAU Modification methylase HgiCII OS=Herpetosiphon aurantiacus
GN=hgiCIIM PE=3 SV=1
Length = 437
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFS-IEEINAMSPDVILMSP 61
RL A V + +I+ A VY+ N+P T+ N+ + ++++ A D+++
Sbjct: 17 RLGLEAVGGICVGSAEIDQQAIKVYRQNWP-TDRSEHNLGDITTLQQLPAH--DLVVGGV 73
Query: 62 PCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSML- 120
PCQP++ G + D R + +I + I + + ENVKG R+R + S+L
Sbjct: 74 PCQPWSIAGKNQAFDDPRGQLWADVIRLV-RINQPKAFIFENVKGLIDPRNRLCLESILD 132
Query: 121 --TRAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150
G+ LL+ +GV +R R ++I
Sbjct: 133 SFKAEGYNVYYKLLNSFDYGVAQNRDRVFIIG 164
>sp|P34879|MTS2_SHISO Modification methylase SsoII OS=Shigella sonnei GN=ssoIIM PE=3 SV=1
Length = 379
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 45 SIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENV 104
I+E + ++++ PC F++ GL+K D R T L + I I LLENV
Sbjct: 124 KIDEKDIPDHEILVGGFPCVAFSQAGLKKGFNDTRGT-LFFDIARIIKEKKPHAFLLENV 182
Query: 105 K---GFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEA 161
K G + R+ +I + L + + + FGVP +R R Y++ + E
Sbjct: 183 KNLLGHDKGRTFSIIKNTLEELNYTVYYNIFAAKDFGVPQNRERIYIVGFNKEKVRNHE- 241
Query: 162 SFCFETSSELMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVS 212
F F T + T + + + + ++ TL L + H RR LV+
Sbjct: 242 HFTFPTPLKTKTRVGDILEKSVD---NKYTLSDALWNGHQ-----RRKLVN 284
>sp|Q59603|MTB1_NEIGO Modification methylase NgoBI OS=Neisseria gonorrhoeae GN=ngoBIM
PE=3 SV=2
Length = 317
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 20/157 (12%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSP------DV 56
RL + V + + + A VY+ NF +IN + P D+
Sbjct: 15 RLGFEKYGCTNVFSSEWDKYARQVYEANFGEK----------PFGDINGIDPSDIPDHDI 64
Query: 57 ILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSR 113
+L PCQPF+ G D R T L + I I + LLENVK + R+
Sbjct: 65 LLAGFPCQPFSIAGKGLGFEDTRGT-LFFNIAEILKTKQPKAFLLENVKRLTTHDSGRTF 123
Query: 114 DLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150
++ L + G+ +L+ FG+P R R Y++
Sbjct: 124 RIVLETLKQLGYTVYFKVLNTLDFGLPQKRERIYIVG 160
>sp|P50185|MTD5_DACSA Modification methylase DsaV OS=Dactylococcopsis salina GN=dsaVM
PE=3 SV=1
Length = 351
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 55 DVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEG---SR 111
D++L PCQ F++ G ++ D R L + + I Q +LLENVKG G R
Sbjct: 67 DLLLAGFPCQAFSQGGRKQGFQDER-GQLFFQVAKILNDHRPQAILLENVKGLRGHDKGR 125
Query: 112 SRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150
+ +I +L + + ++S T F +P R R +++
Sbjct: 126 TLQMILYVLEKLNYVVSWKIISATDFNLPQKRERIFIVG 164
>sp|P31033|MTM4_NEIGO Modification methylase NgoMIV OS=Neisseria gonorrhoeae GN=ngoMIVM
PE=3 SV=1
Length = 312
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 25/177 (14%)
Query: 14 VTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQK 73
V I+I SA + N P N+ +++ F E + + D++ PC PF++ G Q
Sbjct: 27 VALIEIEPSACQTLRLNRPDWNVIEGDVRLFQGEGYDGI--DLLAGGVPCPPFSKAGKQL 84
Query: 74 DIADAR---CTALSYLIETIPAIPSLQCLLLENVKG-----FEGSRSRDLITSMLTRAGF 125
D R A+ ET P + ++LENV+G FE R+ IT + G+
Sbjct: 85 GKDDERDLFPEAIRLAKETDP-----KAIMLENVRGLLDPKFENYRNH--ITEQFAKLGY 137
Query: 126 RFQEFLLSPTQFGVPNSRTRYYLIAKRS--------PAAHSSEASFCFETSSELMTE 174
Q LL +GV R R +A ++ P +S + E +LM+E
Sbjct: 138 LGQWKLLYAADYGVSQLRPRVLFVALKNEYTNFFKWPEPNSEQPKTVGELLFDLMSE 194
>sp|O33481|MTP1_PSYTA Modification methylase PspPI OS=Psychrobacter sp. (strain TA137)
GN=pspPIM PE=3 SV=1
Length = 416
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 23 ANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTA 82
A + + N P N+ +I++ +N D++ PCQPF+ G Q D R T
Sbjct: 110 ACATLRANRPNWNVIEDDIENVDFTHLNGKV-DLLTGGFPCQPFSYAGKQLGFEDLRGTL 168
Query: 83 LSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLITSMLTRAGFRFQEFLLSPTQF-G 138
+ + I I + L ENVKG +G R+ +I +L G++ E + F
Sbjct: 169 VFEMARAIKEIKP-KVFLAENVKGLAENDGGRTLSIIIKVLEDLGYKILEKEVYKAIFYK 227
Query: 139 VPNSRTRYYLIAKRS 153
VP R R +I R+
Sbjct: 228 VPQKRERLIIIGVRT 242
>sp|P50182|MTN4_NEILA Modification methylase NlaIV OS=Neisseria lactamica GN=nlaIVM PE=3
SV=1
Length = 423
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 27/220 (12%)
Query: 18 DINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIAD 77
+I +A V K N+P G + IE + D++L PCQ F+ G + D
Sbjct: 38 EIKPAALEVLKQNYPDEVPYGDITK---IETGDIPDFDILLAGFPCQAFSFAGKRLGFED 94
Query: 78 ARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRD----------LITSMLTRAGFRF 127
R T L + + I + +LENV+G +D +I L G+
Sbjct: 95 TRGT-LFFDVARILKAKKPKGFILENVEGLVTHDRKDPTQKIGRTLTVILETLEALGYYV 153
Query: 128 QEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLK--ANTCNP 185
+L+ FG+P +R R YL + S+ FET T PKLK + P
Sbjct: 154 SWKVLNAKDFGIPQNRKRIYLT-----GSLKSKPDLSFET-----TPSPKLKNILESGLP 203
Query: 186 LLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDI 225
S + +L PS +LY + + + H +DI
Sbjct: 204 TESSPFIKKLLKKFPPS-ELYGKSVKDKRGGKNNIHSWDI 242
>sp|P94147|MTA1_RUEGE Modification methylase AgeI OS=Ruegeria gelatinovora GN=ageIM PE=3
SV=1
Length = 429
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 19/148 (12%)
Query: 16 AIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEIN---AMSP---DVILMSPPCQPFTRT 69
A D T A + YK N P +I++ ++I ++P DV++ PPCQ F+
Sbjct: 27 ANDHETPALATYKENHPDAVCSTDSIETVDPKKIREDLGVAPGQVDVVMGGPPCQGFSTY 86
Query: 70 GLQKDIADAR----CTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRA-- 123
G ++D DAR ++ E P + L+ENV G ++ M+ RA
Sbjct: 87 GQRRD-DDARNQLYVPYFGFVEEFRP-----KAFLIENVVGLLSMSGGAVLADMVARAEA 140
Query: 124 -GFRFQEFLLSPTQFGVPNSRTRYYLIA 150
G+ L ++GVP R R ++
Sbjct: 141 LGYAADVVTLDACEYGVPQHRRRVFIFG 168
>sp|Q59606|MTF7_NEIGO Modification methylase NgoFVII OS=Neisseria gonorrhoeae GN=ngoFVIIM
PE=3 SV=1
Length = 374
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 15/157 (9%)
Query: 4 LSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSP-----DVIL 58
L H E V A D + A ++ N G I IE+IN P D+IL
Sbjct: 30 LGFHQAGCETVWANDFSHWACESFRKNI------GDVIVEGDIEQINPNDPTIPDCDIIL 83
Query: 59 MSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITS 118
PCQ F+ Q + R + + A + + ENVKG + + I
Sbjct: 84 GGFPCQDFSMIWKQPGLEGERGNLYKSFLRFVNA-KKPKVFVAENVKGLLTANKKKAIQQ 142
Query: 119 MLT---RAGFRFQEFLLSPTQFGVPNSRTRYYLIAKR 152
++T G+ Q + + +FGVP R R ++ R
Sbjct: 143 IITDFENCGYYVQANVYNFAEFGVPQFRERVLIVGVR 179
>sp|P50188|MTN1_NOCAE Modification methylase NaeI OS=Lechevalieria aerocolonigenes
GN=naeIM PE=3 SV=1
Length = 413
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 18/156 (11%)
Query: 4 LSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSP------DVI 57
L FS + +D+N +A R NL+ + + + + + ++P ++
Sbjct: 20 LEKAGFSHRLAVELDVNAAATL-------RKNLKSDVVITGDVADPSVLNPMEHLGVSLL 72
Query: 58 LMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSR---SRD 114
PC PF+ G Q D R ++ +E + + L+LENV+G R R
Sbjct: 73 AGGVPCPPFSIAGKQLGADDMR-DLFAWAVELCDVMKP-RALMLENVRGLSMPRFAGYRQ 130
Query: 115 LITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150
+ L G+ + LL + FGVP R R+ L+A
Sbjct: 131 HVLDRLNDMGYVAEWRLLHASDFGVPQLRPRFVLVA 166
>sp|P34906|MTF1_FUSNU Modification methylase FnuDI OS=Fusobacterium nucleatum GN=fnuDIM
PE=3 SV=1
Length = 344
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 7/147 (4%)
Query: 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRT 69
E++ A + + + Y+ N + L ++I+ EE+ D I+ PPCQ ++
Sbjct: 21 GFEIIVANEYDKTIWETYEKNH-KAKLIKKDIREILSEELP--KSDGIIGGPPCQSWSEA 77
Query: 70 GLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLT---RAGFR 126
G + I D R I + I + L ENVKG R+ + + ++ AG+
Sbjct: 78 GSLRGINDPRGKLFYEYIRILKDIQP-KFFLAENVKGMLSKRNTEAVKDIIKEFEEAGYN 136
Query: 127 FQEFLLSPTQFGVPNSRTRYYLIAKRS 153
LL+ +GV R R + + R
Sbjct: 137 VFIKLLNAFDYGVAQDRERVFYVGFRK 163
>sp|P31974|MTA1_CELCE Modification methylase AluI OS=Cellulosimicrobium cellulans
GN=aluIM PE=3 SV=1
Length = 521
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 16 AIDINTSANSVYKHNFPRTNL----RGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71
A++I+ A +VY+ N+ + L N + ++ + DV+ PCQPF+++G
Sbjct: 34 AVEIDREAAAVYERNWNKPALGDITDDANDEGVTLRGYDG-PIDVLTGGFPCQPFSKSGA 92
Query: 72 QKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRD---LITSMLTRAGFR-- 126
Q +A+ R T L + I I L+LENV+ G R R I L G+
Sbjct: 93 QHGMAETRGT-LFWNIARIIEEREPTVLILENVRNLVGPRHRHEWLTIIETLRFFGYEVS 151
Query: 127 -----FQEFLLSPTQFGVPNSRTRYYLIAKRSP 154
F LL G P R R ++ A P
Sbjct: 152 GAPAIFSPHLLPAWMGGTPQVRERVFITATLVP 184
>sp|P08455|MTP2_NEIGO Modification methylase NgoPII OS=Neisseria gonorrhoeae GN=ngoPIIM
PE=3 SV=2
Length = 330
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 9/163 (5%)
Query: 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRT 69
E+ A + + + + +K N P+T+L +I+ EE D I+ PPCQ ++
Sbjct: 21 GFEIPAANEYDKTIWATFKANHPKTHLIEGDIRKIK-EEDFPEEIDGIIGGPPCQSWSEA 79
Query: 70 GLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTR---AGFR 126
G + I DAR I + + + L ENV G +R + ++L G+
Sbjct: 80 GALRGIDDARGQLFFDYIRILKS-KQPKFFLAENVSGMLANRHNGAVQNLLKMFDGCGYD 138
Query: 127 FQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSS 169
+ + +GV R R + I R E F F S
Sbjct: 139 VTLTMANAKDYGVAQERKRVFYIGFRK----DLEIKFSFPKGS 177
>sp|P52311|MTX2_XANOR Modification methylase XorII OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=xorIIM PE=3 SV=2
Length = 424
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 71/155 (45%), Gaps = 13/155 (8%)
Query: 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSP------DVILMSPPC 63
++V A+DI+ + +K NFP+ +++ + +E+ ++ D+++ PC
Sbjct: 24 GFDLVAAVDIDPIHCAAHKFNFPKCATVCKSVVDVTGDELRRIAGIGKRDIDIVIGGAPC 83
Query: 64 QPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSML--- 120
Q F+ G ++ + D+R + + + + + + + ENVKG + R + ++
Sbjct: 84 QGFSLIG-KRALDDSRNQLVHHYVRVVMELKP-KYFVFENVKGLTVGKHRQFLKEVIEAF 141
Query: 121 TRAGFRF--QEFLLSPTQFGVPNSRTRYYLIAKRS 153
G+ +L+ +GVP R R L+ R
Sbjct: 142 QNGGYDVVTDYRVLNAADYGVPQDRRRLILMGARK 176
>sp|P34877|MTSA_LACLC Modification methylase ScrFIA OS=Lactococcus lactis subsp. cremoris
GN=scrFIAM PE=3 SV=1
Length = 389
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 10 SLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPF 66
++ V + +I+ A YK NF P ++ I+E + D+++ PCQ F
Sbjct: 100 KVKSVFSSEIDKFAIKTYKANFGDEPHGDIT-------KIDEKDIPDHDILVGGFPCQAF 152
Query: 67 TRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLITSMLTRA 123
++ G + D R T L + I I + LLENVK + R+ I + L
Sbjct: 153 SQAGKKLGFDDTRGT-LFFEIARIIKEKRPKAFLLENVKNLKTHDKGRTFKTILNTLEEL 211
Query: 124 GFRFQEFLLSPTQFGVPNSRTRYYLIA 150
+ L FG+P +R R Y++
Sbjct: 212 DYEVHTALFKARDFGLPQNRERIYIVG 238
>sp|P20589|MTH3_HAEAE Modification methylase HaeIII OS=Haemophilus aegyptius GN=haeIIIM
PE=1 SV=1
Length = 330
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 7/147 (4%)
Query: 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRT 69
++ A + + S Y+ N ++G +I S +E D I+ PPCQ ++
Sbjct: 21 GFRIICANEYDKSIWKTYESNHSAKLIKG-DISKISSDEFPKC--DGIIGGPPCQSWSEG 77
Query: 70 GLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTR---AGFR 126
G + I D R I + + L ENVKG R + + AG+
Sbjct: 78 GSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYD 136
Query: 127 FQEFLLSPTQFGVPNSRTRYYLIAKRS 153
LL+ +GV R R + I R
Sbjct: 137 VHIILLNANDYGVAQDRKRVFYIGFRK 163
>sp|O31073|MTS1_STRAH Modification methylase SacI OS=Streptomyces achromogenes GN=sacIM
PE=3 SV=1
Length = 390
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 14/144 (9%)
Query: 11 LEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEI------NAMSPDVILMSPPCQ 64
L V A D +A NFP T +IQ+ E+ P +++ PPC
Sbjct: 38 LRVAVATDYEQTALDTLSANFPHTKTLCGDIQTIPTAELLEAGGLKPGDPTLVIGGPPCT 97
Query: 65 PFTRTGL----QKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSR---DLIT 117
PF+++G +++ AD + L + + + +LENV+G + D +
Sbjct: 98 PFSKSGFWIEEKRNSADPNASLLDEYVRVVRES-KPEAFILENVQGLTYKTHQAQFDRLI 156
Query: 118 SMLTRAGFRFQEFLLSPTQFGVPN 141
+ L AG+ +L ++GVP
Sbjct: 157 AGLKDAGYNPTFRVLLAAEYGVPQ 180
>sp|P23737|MTS9_STAAU Modification methylase Sau96I OS=Staphylococcus aureus GN=sau96IM
PE=3 SV=1
Length = 430
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 77/183 (42%), Gaps = 13/183 (7%)
Query: 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFS--IEEINAMSPDVILMSPPCQPFT 67
L A++I+ +A + N P+ + +I+ + ++E D++ PCQ F+
Sbjct: 119 GLSTYGAVEIDKNAAETLRINRPKWKVIENDIEFIADNLDEFIDEEIDILSGGYPCQTFS 178
Query: 68 RTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLITSMLTRAG 124
G + AD R T L Y I + + + ENV+G + ++ +++ + + G
Sbjct: 179 YAGKRNGFADTRGT-LFYPYSKILSKLKPKAFIAENVRGLVNHDDGKTLEVMLKVFIKEG 237
Query: 125 FRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSS-------ELMTELPK 177
+ +L+ + V R R +I R + F F + +++ ++PK
Sbjct: 238 YEVYWNILNSWNYDVAQKRERIVIIGIREDLVKEQKYPFRFPLAQVYKPVLKDVLKDVPK 297
Query: 178 LKA 180
K
Sbjct: 298 SKV 300
>sp|P09795|MTS1_SALIN Modification methylase SinI OS=Salmonella infantis GN=sinIM PE=3
SV=1
Length = 461
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 39/193 (20%)
Query: 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSP-------DVILMSPP 62
E + A +I+ +A N P L G +I+ ++ E+I ++ D+I+ PP
Sbjct: 95 GFETLLASEIDKAARDTILSNRPNMALIG-DIRDYTTEDILKLAGVSSGNEIDLIMGGPP 153
Query: 63 CQPFTRTGLQKDIADARCTA-LSYLIETIPAIPSLQCLLLENVKGF---------EGSRS 112
CQ F+ G + + D R + YL + P + +++ENV+G R
Sbjct: 154 CQAFSTAGKRLGLEDERGNVFIKYLDVALDIRP--KYIVIENVRGLLSAPMKHRPHNERG 211
Query: 113 RDL---------------ITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAH 157
L I ++ AG+ L + FGVP R R +I R
Sbjct: 212 EGLPPLKSEEQPGGVLHYIIRIIKSAGYSVSFNLYNSANFGVPQIRERVIIICSRD---- 267
Query: 158 SSEASFCFETSSE 170
S F T SE
Sbjct: 268 GSRVPFLQPTHSE 280
>sp|O52702|MTA1_ACEPA Modification methylase ApaLI OS=Acetobacter pasteurianus GN=apaLIM
PE=3 SV=1
Length = 429
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 10 SLEVVTAIDINTSANSVYKHNF--PRTNLRGRNIQSFSIEEI-NAMSPDVILMSPPCQPF 66
L+ + +IN A Y+ N P L + IE + P V++ PPCQ F
Sbjct: 25 GLKPLFGAEINADACQTYQENVGSPCHQLDLSTVDPSHIEMLTGGKRPFVVIGGPPCQGF 84
Query: 67 TRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLITSMLTRA 123
+ G ++ AD R + + + + S + L+ ENV+G G R +
Sbjct: 85 STAG-PRNFADPRNLLIFNYLNIVERL-SPRWLIFENVEGLLTSGGGRDLARLVREFVDM 142
Query: 124 GF--RFQEFLLSPTQFGVPNSRTRYYLIAKR 152
G+ R Q+ L+ +GVP +R R +I R
Sbjct: 143 GYSVRLQKVNLA--AYGVPQTRKRVLIIGNR 171
>sp|P15446|MTH2_HAEPA Modification methylase HpaII OS=Haemophilus parainfluenzae
GN=hpaIIM PE=1 SV=1
Length = 358
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSP---DVILM 59
R++ + + + + + A Y+ NF +L +I ++EE A P D++
Sbjct: 45 RIAMQNLGGKCIFSSEWDEQAQKTYEANF--GDLPYGDI---TLEETKAFIPEKFDILCA 99
Query: 60 SPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFE----GSRSRDL 115
PCQ F+ G + D R T L + + I + LENVKG + G + +
Sbjct: 100 GFPCQAFSIAGKRGGFEDTRGT-LFFDVAEIIRRHQPKAFFLENVKGLKNHDKGRTLKTI 158
Query: 116 ITSMLTRAGFRFQE-FLLSPTQFGVPNSRTRYYLIA 150
+ + G+ E +++ FGVP +R R Y++
Sbjct: 159 LNVLREDLGYFVPEPAIVNAKNFGVPQNRERIYIVG 194
>sp|P06530|MTBR_BACIU Modification methylase BsuRI OS=Bacillus subtilis GN=hsdRM PE=3
SV=1
Length = 436
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 18 DINTSANSVYKHNFPRTNLRGRNIQ-SFSIEEINAMSP-DVILMSPPCQPFTRTGLQKDI 75
D+ AN YK NFP G IQ I ++ ++IL PC F+ G +
Sbjct: 115 DLFKEANQTYKTNFP-----GHVIQHEKDIRQVKYFPKCNLILGGFPCPGFSEAGPRLID 169
Query: 76 ADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSML---TRAGFRFQEFLL 132
D L ++ I A P + + ENVKG +++ ++ AG+R Q LL
Sbjct: 170 DDRNFLYLHFIRSLIQAQP--EIFVAENVKGMMTLGKGEVLNQIIEDFASAGYRVQFKLL 227
Query: 133 SPTQFGVPNSRTRYYLIAKR 152
+ +GVP R R + R
Sbjct: 228 NARDYGVPQLRERVIIEGVR 247
>sp|P17044|MTBF_BACIU Modification methylase BsuFI OS=Bacillus subtilis GN=hsdFM PE=3
SV=1
Length = 409
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 45 SIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENV 104
I E + DV+L PCQPF+ G ++ A R + ++ + + LLENV
Sbjct: 152 KINENDIPDQDVLLAGFPCQPFSNIGKREGFAHERRNIIFDVLRILKK-KQPKMFLLENV 210
Query: 105 KGF---EGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150
KG + + +I L G+ ++ FG+P R R ++
Sbjct: 211 KGLLTNDNGNTFRVILDNLKSLGYSVFYEVMDAQNFGLPQRRERIVIVG 259
>sp|P50196|MTE8_ECOLX Modification methylase Eco47II OS=Escherichia coli GN=eco47IIM PE=3
SV=1
Length = 417
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 6/158 (3%)
Query: 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRT 69
L+ V +I++ A + N P N+ ++ + DV+ PCQ F+
Sbjct: 101 GLKSVLLNEIDSHACKTLRKNRPEWNVVEGDVSQVDFTPYRN-TVDVLAGGFPCQAFSYA 159
Query: 70 GLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGF---EGSRSRDLITSMLTRAGFR 126
G + D R T I + + LL ENV+G + R+ + I +++T G+
Sbjct: 160 GKKLGFEDTRGTLFFEFARAAKEI-NPKVLLAENVRGLLNHDAGRTLETIKNIITDLGYT 218
Query: 127 -FQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASF 163
F+ +L + VP R R ++A R+ A + +
Sbjct: 219 LFEPRVLKAIFYKVPQKRERLIIVAVRNDLADGIDYEW 256
>sp|P13906|MTB1_LYSSH Modification methylase BspRI OS=Lysinibacillus sphaericus GN=bspRIM
PE=1 SV=3
Length = 424
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 10/151 (6%)
Query: 7 HAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAM-SPDVILMSPPCQP 65
H V A DI + A Y+ N P I I +I S ++++ PC
Sbjct: 103 HESVFHTVYANDIFSEALQTYEKNMPNHVF----IHEKDIRKIKEFPSANLVIGGFPCPG 158
Query: 66 FTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKG---FEGSRSRDLITSMLTR 122
F+ G + + D R + I + + + + ENVKG G I
Sbjct: 159 FSEAG-PRLVDDERNFLYIHFIRCLMQVQP-EIFVAENVKGMMTLGGGEVFRQIVEDFGA 216
Query: 123 AGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
AG+R + LL+ +GVP R R ++ R+
Sbjct: 217 AGYRVEARLLNARDYGVPQIRERVIIVGVRN 247
>sp|O34680|YDIP_BACSU Probable BsuMI modification methylase subunit YdiP OS=Bacillus
subtilis (strain 168) GN=ydiP PE=2 SV=1
Length = 389
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 18 DINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAM-SPDVILMSPPCQPFTRTGLQKDIA 76
+++ A +V NFP G I+ I EI + S D++ PCQ ++ G ++ I
Sbjct: 29 EVDPLAKAVLSKNFP-----GVKIED-DINEIRELPSCDLVAAGFPCQDLSQAGGKEGID 82
Query: 77 DARCTALSYLIETIPAIPSLQ---CLLLENVK---GFEGSRSRDLITSMLTRAGFRFQEF 130
+R + L E I +L+ENV ++ +TS+L+ G+ +
Sbjct: 83 GSRSGLVKKLFELIEKKEHANRPPWILIENVPYMLRLNRGKAMSYLTSVLSELGYTWAYR 142
Query: 131 LLSPTQFGVPNSRTRYYLIA 150
+ FG+P R R L+A
Sbjct: 143 TVDARCFGLPQRRHRVILLA 162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,380,928
Number of Sequences: 539616
Number of extensions: 3166948
Number of successful extensions: 7397
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 7344
Number of HSP's gapped (non-prelim): 77
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)