Query psy3543
Match_columns 250
No_of_seqs 207 out of 1541
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 19:21:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0919|consensus 100.0 4.9E-56 1.1E-60 374.8 7.0 233 3-250 19-254 (338)
2 PRK10458 DNA cytosine methylas 100.0 1.1E-43 2.3E-48 332.6 18.7 218 2-246 103-372 (467)
3 cd00315 Cyt_C5_DNA_methylase C 100.0 5.8E-42 1.3E-46 303.3 17.7 149 2-155 15-166 (275)
4 PF00145 DNA_methylase: C-5 cy 100.0 6.6E-43 1.4E-47 313.2 9.2 148 2-155 15-165 (335)
5 TIGR00675 dcm DNA-methyltransf 100.0 3.7E-41 8E-46 303.4 17.1 145 2-152 13-160 (315)
6 COG0270 Dcm Site-specific DNA 100.0 1.5E-41 3.3E-46 307.5 11.6 150 2-154 18-169 (328)
7 TIGR03704 PrmC_rel_meth putati 95.4 0.091 2E-06 46.0 8.4 112 13-131 112-239 (251)
8 COG2263 Predicted RNA methylas 93.9 0.085 1.8E-06 44.3 4.2 96 9-129 66-165 (198)
9 PF13659 Methyltransf_26: Meth 93.0 0.11 2.5E-06 38.9 3.5 55 11-66 23-83 (117)
10 TIGR00537 hemK_rel_arch HemK-r 92.3 1.3 2.8E-05 36.2 9.1 115 13-143 43-172 (179)
11 KOG3191|consensus 92.1 1.7 3.7E-05 36.5 9.4 112 10-129 67-190 (209)
12 TIGR00479 rumA 23S rRNA (uraci 91.6 0.87 1.9E-05 42.8 8.2 107 12-143 315-428 (431)
13 PRK11783 rlmL 23S rRNA m(2)G24 91.1 1.3 2.8E-05 44.5 9.3 129 11-150 561-700 (702)
14 PRK01581 speE spermidine synth 90.8 5.3 0.00012 37.1 12.2 128 11-155 174-316 (374)
15 PF09445 Methyltransf_15: RNA 90.7 0.47 1E-05 38.9 4.7 60 11-70 21-86 (163)
16 PHA03412 putative methyltransf 90.3 0.48 1E-05 41.3 4.7 49 13-65 78-126 (241)
17 PRK03612 spermidine synthase; 89.7 3.2 6.9E-05 40.3 10.3 125 11-153 321-460 (521)
18 TIGR02085 meth_trns_rumB 23S r 89.3 1.8 4E-05 40.0 8.1 102 12-142 256-363 (374)
19 COG1092 Predicted SAM-dependen 88.0 2.8 6E-05 39.3 8.3 122 10-137 239-373 (393)
20 PRK09328 N5-glutamine S-adenos 86.4 9.9 0.00021 33.0 10.6 121 12-148 133-272 (275)
21 COG2520 Predicted methyltransf 85.5 7 0.00015 35.9 9.3 97 14-129 214-317 (341)
22 PF01170 UPF0020: Putative RNA 85.5 1.2 2.7E-05 36.8 4.2 76 14-99 64-146 (179)
23 PRK14968 putative methyltransf 84.9 12 0.00026 30.1 9.8 49 13-65 47-102 (188)
24 COG3963 Phospholipid N-methylt 84.9 2.1 4.5E-05 35.5 5.0 65 3-67 65-131 (194)
25 TIGR03534 RF_mod_PrmC protein- 84.7 9.8 0.00021 32.3 9.6 108 13-130 113-239 (251)
26 PHA03411 putative methyltransf 84.7 1.6 3.5E-05 38.9 4.7 112 13-129 90-211 (279)
27 COG4747 ACT domain-containing 83.6 2.2 4.8E-05 33.1 4.4 37 99-140 8-45 (142)
28 KOG3420|consensus 83.5 1.8 4E-05 35.1 4.1 61 10-79 70-134 (185)
29 PRK00121 trmB tRNA (guanine-N( 83.3 3 6.5E-05 35.0 5.7 107 12-128 65-177 (202)
30 PF03602 Cons_hypoth95: Conser 80.8 0.73 1.6E-05 38.4 1.0 60 3-62 57-123 (183)
31 PRK14904 16S rRNA methyltransf 80.2 9.9 0.00022 36.0 8.6 106 13-123 277-396 (445)
32 PRK14967 putative methyltransf 79.5 31 0.00066 29.2 10.6 111 11-131 59-183 (223)
33 cd02440 AdoMet_MTases S-adenos 79.5 4.4 9.6E-05 28.1 4.7 54 11-66 21-79 (107)
34 PLN02823 spermine synthase 78.7 51 0.0011 30.2 12.3 128 11-154 127-269 (336)
35 PRK03522 rumB 23S rRNA methylu 77.6 3.9 8.5E-05 36.8 4.7 49 12-62 196-249 (315)
36 PRK13168 rumA 23S rRNA m(5)U19 77.3 10 0.00023 35.8 7.8 107 12-143 320-432 (443)
37 PRK14902 16S rRNA methyltransf 77.1 14 0.00031 34.9 8.6 56 13-70 277-337 (444)
38 smart00650 rADc Ribosomal RNA 76.9 4.2 9.2E-05 32.9 4.4 47 13-62 37-86 (169)
39 TIGR00446 nop2p NOL1/NOP2/sun 76.2 3.1 6.7E-05 36.5 3.6 55 13-70 98-157 (264)
40 PRK10901 16S rRNA methyltransf 75.7 17 0.00036 34.3 8.6 58 12-70 269-330 (427)
41 TIGR03533 L3_gln_methyl protei 75.5 15 0.00032 32.7 7.8 104 13-127 147-269 (284)
42 PF13847 Methyltransf_31: Meth 75.2 4.5 9.8E-05 31.9 4.0 80 10-104 28-112 (152)
43 PRK04148 hypothetical protein; 74.8 7.5 0.00016 30.8 5.1 55 1-62 32-86 (134)
44 PRK10909 rsmD 16S rRNA m(2)G96 74.4 4 8.7E-05 34.5 3.7 78 11-105 76-161 (199)
45 TIGR02752 MenG_heptapren 2-hep 72.5 27 0.00059 29.3 8.5 77 13-104 72-153 (231)
46 TIGR00095 RNA methyltransferas 72.2 4 8.6E-05 34.0 3.1 53 10-62 71-130 (189)
47 PTZ00146 fibrillarin; Provisio 72.1 75 0.0016 28.6 13.4 123 13-155 159-289 (293)
48 PRK14901 16S rRNA methyltransf 72.1 18 0.00039 34.1 7.9 59 13-71 279-343 (434)
49 COG0742 N6-adenine-specific me 71.3 6.4 0.00014 33.0 4.1 61 3-64 58-125 (187)
50 COG2521 Predicted archaeal met 71.3 9.1 0.0002 33.6 5.1 111 11-131 157-276 (287)
51 PRK11783 rlmL 23S rRNA m(2)G24 71.1 12 0.00026 37.7 6.8 73 13-92 258-336 (702)
52 PF08241 Methyltransf_11: Meth 71.1 14 0.0003 25.7 5.5 74 3-91 13-88 (95)
53 COG2265 TrmA SAM-dependent met 70.5 45 0.00097 31.7 10.1 98 10-130 314-418 (432)
54 PF02475 Met_10: Met-10+ like- 69.1 4.9 0.00011 34.0 3.0 48 11-62 125-178 (200)
55 PRK15128 23S rRNA m(5)C1962 me 68.7 14 0.00031 34.6 6.3 53 11-63 243-303 (396)
56 COG4262 Predicted spermidine s 68.7 28 0.00061 32.6 7.9 128 11-155 313-454 (508)
57 KOG1122|consensus 68.3 14 0.00031 34.8 6.1 66 1-71 260-330 (460)
58 PRK00274 ksgA 16S ribosomal RN 68.2 6.8 0.00015 34.5 3.9 122 13-153 66-195 (272)
59 PF12847 Methyltransf_18: Meth 67.8 6.4 0.00014 28.8 3.2 47 11-61 26-78 (112)
60 COG0144 Sun tRNA and rRNA cyto 67.6 11 0.00023 34.8 5.1 62 12-73 183-249 (355)
61 TIGR03587 Pse_Me-ase pseudamin 66.6 12 0.00027 31.4 5.0 45 12-60 68-112 (204)
62 PRK01544 bifunctional N5-gluta 66.5 64 0.0014 31.2 10.5 121 13-149 164-304 (506)
63 PF05175 MTS: Methyltransferas 65.9 7.9 0.00017 31.4 3.6 46 13-62 57-107 (170)
64 COG0116 Predicted N6-adenine-s 65.8 14 0.0003 34.5 5.5 77 9-94 252-334 (381)
65 PF13651 EcoRI_methylase: Aden 64.9 13 0.00027 33.9 4.9 57 53-127 135-191 (336)
66 COG4123 Predicted O-methyltran 64.2 8.3 0.00018 33.8 3.6 130 13-155 70-215 (248)
67 PRK14903 16S rRNA methyltransf 63.2 8.5 0.00019 36.4 3.7 57 13-71 264-325 (431)
68 PRK00811 spermidine synthase; 62.2 1.1E+02 0.0023 27.1 10.4 125 11-154 100-239 (283)
69 PF06325 PrmA: Ribosomal prote 61.1 5.3 0.00011 35.9 1.8 100 8-131 181-282 (295)
70 TIGR00417 speE spermidine synt 60.7 1.2E+02 0.0025 26.6 11.6 125 11-152 96-232 (270)
71 TIGR00091 tRNA (guanine-N(7)-) 59.8 59 0.0013 26.8 7.9 105 13-127 42-153 (194)
72 PRK11933 yebU rRNA (cytosine-C 58.8 9.3 0.0002 36.7 3.2 57 13-71 140-201 (470)
73 PRK05031 tRNA (uracil-5-)-meth 58.8 59 0.0013 29.9 8.4 105 11-143 228-351 (362)
74 KOG2730|consensus 58.7 10 0.00022 32.9 3.0 79 11-91 116-201 (263)
75 PF10672 Methyltrans_SAM: S-ad 58.4 10 0.00023 33.9 3.2 115 10-137 145-271 (286)
76 PRK13562 acetolactate synthase 58.3 22 0.00047 25.9 4.3 45 98-151 6-51 (84)
77 PRK00377 cbiT cobalt-precorrin 57.7 1.1E+02 0.0023 25.2 10.2 96 13-131 67-169 (198)
78 PRK13256 thiopurine S-methyltr 56.8 20 0.00042 31.0 4.5 25 3-30 60-84 (226)
79 COG2890 HemK Methylase of poly 55.2 15 0.00033 32.6 3.7 105 13-125 136-255 (280)
80 PRK06737 acetolactate synthase 55.1 27 0.00059 24.8 4.3 46 98-151 6-51 (76)
81 PRK13255 thiopurine S-methyltr 53.5 24 0.00051 30.1 4.5 23 3-28 54-76 (218)
82 PF13649 Methyltransf_25: Meth 53.2 19 0.00041 26.1 3.4 45 12-59 25-73 (101)
83 TIGR00308 TRM1 tRNA(guanine-26 53.0 13 0.00029 34.5 3.1 51 10-62 68-123 (374)
84 TIGR00563 rsmB ribosomal RNA s 52.9 35 0.00076 32.0 6.0 59 13-72 264-328 (426)
85 PLN02336 phosphoethanolamine N 52.9 56 0.0012 30.9 7.4 128 12-152 60-211 (475)
86 COG0030 KsgA Dimethyladenosine 52.4 27 0.00059 30.8 4.8 48 13-62 54-104 (259)
87 TIGR01177 conserved hypothetic 52.3 26 0.00057 31.6 4.9 52 13-67 206-262 (329)
88 PF05185 PRMT5: PRMT5 arginine 50.8 11 0.00024 35.9 2.2 45 11-59 214-264 (448)
89 PRK14896 ksgA 16S ribosomal RN 50.6 24 0.00052 30.7 4.2 45 13-62 53-100 (258)
90 PRK11805 N5-glutamine S-adenos 50.1 20 0.00044 32.2 3.7 51 13-67 159-215 (307)
91 COG3172 NadR Predicted ATPase/ 49.3 59 0.0013 27.0 5.9 82 14-104 81-165 (187)
92 TIGR03840 TMPT_Se_Te thiopurin 48.8 34 0.00073 29.0 4.7 23 3-28 51-73 (213)
93 PRK04338 N(2),N(2)-dimethylgua 47.8 28 0.0006 32.4 4.4 49 11-62 81-134 (382)
94 PLN02781 Probable caffeoyl-CoA 47.7 40 0.00087 28.9 5.1 76 13-105 95-180 (234)
95 PRK08178 acetolactate synthase 46.8 39 0.00084 25.2 4.2 46 98-151 12-57 (96)
96 PF01189 Nol1_Nop2_Fmu: NOL1/N 46.8 20 0.00042 31.9 3.1 60 13-73 112-176 (283)
97 PRK01683 trans-aconitate 2-met 46.4 39 0.00084 29.0 4.8 49 12-64 56-104 (258)
98 PLN02366 spermidine synthase 46.1 2.3E+02 0.0049 25.6 12.4 128 11-154 115-255 (308)
99 PF01564 Spermine_synth: Sperm 46.1 73 0.0016 27.6 6.5 117 11-140 100-228 (246)
100 PTZ00338 dimethyladenosine tra 45.7 29 0.00062 31.1 4.0 45 13-62 60-110 (294)
101 PRK11152 ilvM acetolactate syn 45.4 44 0.00096 23.7 4.1 45 98-150 7-51 (76)
102 PRK10258 biotin biosynthesis p 45.1 40 0.00087 28.8 4.7 48 12-62 65-112 (251)
103 TIGR00536 hemK_fam HemK family 43.1 36 0.00077 30.1 4.2 52 13-68 140-197 (284)
104 PF00398 RrnaAD: Ribosomal RNA 42.8 37 0.0008 29.6 4.2 51 12-62 53-106 (262)
105 TIGR00755 ksgA dimethyladenosi 42.2 39 0.00086 29.1 4.2 122 13-153 53-183 (253)
106 COG0426 FpaA Uncharacterized f 42.1 1.2E+02 0.0027 28.3 7.6 50 77-130 314-363 (388)
107 PLN02233 ubiquinone biosynthes 41.4 2.4E+02 0.0051 24.5 9.7 66 13-91 100-173 (261)
108 COG2264 PrmA Ribosomal protein 41.1 38 0.00082 30.6 4.0 104 8-131 182-287 (300)
109 PTZ00357 methyltransferase; Pr 40.5 41 0.00089 34.2 4.4 65 2-67 720-810 (1072)
110 KOG3045|consensus 39.5 96 0.0021 27.8 6.1 84 35-137 213-296 (325)
111 COG1041 Predicted DNA modifica 39.1 2.9E+02 0.0064 25.5 9.4 123 5-151 213-345 (347)
112 PRK14966 unknown domain/N5-glu 38.3 36 0.00077 32.3 3.5 122 13-148 277-415 (423)
113 KOG1227|consensus 37.7 34 0.00075 31.1 3.1 22 10-31 217-238 (351)
114 PRK00517 prmA ribosomal protei 36.3 2.8E+02 0.006 23.8 9.5 95 11-130 142-236 (250)
115 PF01408 GFO_IDH_MocA: Oxidore 33.4 79 0.0017 23.3 4.2 97 2-124 17-113 (120)
116 cd01075 NAD_bind_Leu_Phe_Val_D 32.1 89 0.0019 26.1 4.7 99 2-135 45-144 (200)
117 TIGR00740 methyltransferase, p 29.7 3.4E+02 0.0073 22.9 8.0 78 13-105 81-164 (239)
118 PLN02672 methionine S-methyltr 29.7 55 0.0012 34.8 3.6 135 13-155 144-338 (1082)
119 PRK15068 tRNA mo(5)U34 methylt 29.7 4.2E+02 0.0091 23.8 9.3 104 10-131 144-273 (322)
120 PF05724 TPMT: Thiopurine S-me 29.6 70 0.0015 27.3 3.7 133 3-151 54-217 (218)
121 PRK04457 spermidine synthase; 29.5 2.4E+02 0.0053 24.5 7.2 96 13-123 92-194 (262)
122 TIGR00119 acolac_sm acetolacta 29.5 1.2E+02 0.0026 24.6 4.8 46 98-151 5-50 (157)
123 PRK11088 rrmA 23S rRNA methylt 29.0 86 0.0019 27.3 4.3 44 13-59 114-157 (272)
124 PF05050 Methyltransf_21: Meth 28.5 25 0.00055 27.3 0.7 44 82-127 123-167 (167)
125 KOG0820|consensus 28.4 1.1E+02 0.0023 27.7 4.6 58 3-68 75-138 (315)
126 COG0655 WrbA Multimeric flavod 28.2 53 0.0011 27.5 2.7 65 1-70 24-92 (207)
127 COG4106 Tam Trans-aconitate me 27.6 2.8E+02 0.0062 24.2 6.9 95 11-123 54-148 (257)
128 PF07021 MetW: Methionine bios 27.4 87 0.0019 26.4 3.8 50 13-65 38-87 (193)
129 TIGR00080 pimt protein-L-isoas 27.3 1.3E+02 0.0027 25.2 4.8 48 13-63 104-156 (215)
130 PLN02585 magnesium protoporphy 27.0 4.7E+02 0.01 23.6 9.0 20 13-32 168-187 (315)
131 PRK04266 fibrillarin; Provisio 26.7 4E+02 0.0087 22.7 13.0 118 13-152 98-225 (226)
132 PF11968 DUF3321: Putative met 25.1 3.2E+02 0.007 23.5 6.8 100 14-130 75-179 (219)
133 PRK09489 rsmC 16S ribosomal RN 25.1 91 0.002 28.5 3.8 45 13-62 222-270 (342)
134 TIGR02143 trmA_only tRNA (urac 24.8 75 0.0016 29.1 3.2 95 12-130 220-332 (353)
135 PRK11895 ilvH acetolactate syn 24.7 1.6E+02 0.0034 24.0 4.7 46 98-151 6-51 (161)
136 KOG2361|consensus 23.9 1.1E+02 0.0024 26.9 3.9 49 13-61 99-152 (264)
137 PRK11188 rrmJ 23S rRNA methylt 23.8 77 0.0017 26.6 2.9 44 12-61 77-125 (209)
138 PRK06922 hypothetical protein; 23.7 2.2E+02 0.0047 28.8 6.2 87 13-104 444-539 (677)
139 PF00356 LacI: Bacterial regul 23.3 69 0.0015 20.3 1.9 20 107-126 25-44 (46)
140 PLN02476 O-methyltransferase 22.9 1.9E+02 0.0041 25.8 5.2 75 13-105 145-230 (278)
141 TIGR00138 gidB 16S rRNA methyl 22.3 1.4E+02 0.0029 24.5 4.0 44 13-60 68-116 (181)
142 PRK06202 hypothetical protein; 22.3 2.2E+02 0.0048 23.9 5.5 47 13-62 90-138 (232)
143 PF05958 tRNA_U5-meth_tr: tRNA 22.2 98 0.0021 28.4 3.4 52 11-62 218-287 (352)
144 PRK11727 23S rRNA mA1618 methy 22.1 99 0.0021 28.1 3.4 51 13-63 140-199 (321)
145 TIGR00421 ubiX_pad polyprenyl 21.9 2.6E+02 0.0057 23.0 5.6 80 53-142 75-155 (181)
146 PRK05569 flavodoxin; Provision 21.7 3.7E+02 0.0079 20.4 7.9 78 40-129 37-116 (141)
147 TIGR02987 met_A_Alw26 type II 21.7 1.1E+02 0.0024 29.5 3.8 53 12-66 64-125 (524)
148 PHA01632 hypothetical protein 21.6 1.3E+02 0.0027 20.2 2.9 43 97-139 17-63 (64)
149 PF03721 UDPG_MGDP_dh_N: UDP-g 21.3 3.7E+02 0.008 22.1 6.5 91 2-106 17-123 (185)
150 PF05401 NodS: Nodulation prot 21.1 1.6E+02 0.0035 25.0 4.2 49 11-63 65-116 (201)
151 PRK05568 flavodoxin; Provision 21.0 3.8E+02 0.0082 20.3 7.5 77 40-129 37-115 (142)
152 PLN02490 MPBQ/MSBQ methyltrans 20.9 6.5E+02 0.014 23.0 11.2 121 12-148 138-272 (340)
153 TIGR02113 coaC_strep phosphopa 20.6 1.7E+02 0.0037 24.1 4.2 81 53-138 76-159 (177)
154 TIGR02469 CbiT precorrin-6Y C5 20.3 2.5E+02 0.0054 20.3 4.9 47 12-60 44-95 (124)
155 PRK13304 L-aspartate dehydroge 20.3 5.7E+02 0.012 22.1 9.2 53 2-62 18-70 (265)
156 CHL00100 ilvH acetohydroxyacid 20.2 3.1E+02 0.0067 22.6 5.7 45 98-151 6-51 (174)
No 1
>KOG0919|consensus
Probab=100.00 E-value=4.9e-56 Score=374.83 Aligned_cols=233 Identities=42% Similarity=0.723 Sum_probs=204.2
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhH
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTA 82 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l 82 (250)
+|+++.++.++|+|+|+++.|+++|++|....-+-..||+.++.+++.+.++|+|++|||||||++.|.+++..|+|+..
T Consensus 19 al~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~kefd~l~~~m~lMSPpCQPfTRiG~q~D~~D~Rs~a 98 (338)
T KOG0919|consen 19 ALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTVKEFDKLQANMLLMSPPCQPFTRIGLQRDTEDKRSDA 98 (338)
T ss_pred hHhhhcCchhhEEEEecchhHHHHHhcCcccchhhccccceeeHhhhhhcccceEeeCCCCCchhhhcccccccCchhHH
Confidence 68999999999999999999999999994333345789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccCC-CcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCCCCCCCC
Q psy3543 83 LSYLIETIPAIPS-LQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEA 161 (250)
Q Consensus 83 ~~~~~~ii~~~~~-P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~~~~~~~ 161 (250)
|.+++.++.+++. |+||+||||+||..+.+.+.+++.|+.+||++.+++|++.+||+|++|-|+|+||...-
T Consensus 99 flhil~~lP~~q~LPeYIL~ENVkGFE~S~ar~~~i~~lencGf~~~EfiLsPtqfniPNsR~Ryy~iArl~~------- 171 (338)
T KOG0919|consen 99 FLHILGLLPECQELPEYILMENVKGFESSQARNQFIESLENCGFHWREFILSPTQFNIPNSRYRYYCIARLGA------- 171 (338)
T ss_pred HHHHHhhhhhhhhhhHHHHHhhcccchhhhHHHHHHHHHHhcCchhhheeccccccCCCCcchheeehhhhCC-------
Confidence 9999999999887 99999999999999999999999999999999999999999999999999999998763
Q ss_pred CcccCchhhhhhcCCccc--cCcCCCCCcccchhhhccCCCCCCCcccccccCHHHHHhccccceeecCCCCcceeeccC
Q psy3543 162 SFCFETSSELMTELPKLK--ANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKA 239 (250)
Q Consensus 162 ~f~~~~~~~~~~~~p~~~--~~~~~~~~~~~~l~d~Le~~~~~~~~~~~y~~~~~~~~~~~~~~div~p~~~~~~cftk~ 239 (250)
+|+|+... .+.+.|.-. +. ....++ .|+||||.+.| |+.|+++++++.+++..||||.|+++||+|||||
T Consensus 172 ~F~~~G~~-s~d~~~qFseiaq-k~g~Vk--~i~d~lE~~~d----~s~ylvp~~vL~k~~l~~DIv~P~~srs~CFTkG 243 (338)
T KOG0919|consen 172 DFPFAGGK-SWDEMPQFSEIAQ-KQGLVK--QIADILEENVD----PSDYLVPDDVLTKRVLVMDIVHPAQSRSMCFTKG 243 (338)
T ss_pred CCCCCCCc-ccccccchHHHHH-hcchHH--HHHHHHHhcCC----HHHccCCHHHHHHhHhheeecccccccceEeecC
Confidence 34443221 222233211 10 001234 69999999998 8999999999999999999999999999999999
Q ss_pred CcceeeccccC
Q psy3543 240 YTHYAEGKIDY 250 (250)
Q Consensus 240 y~~~~~g~gs~ 250 (250)
|+||++||||+
T Consensus 244 Ythy~eGtGSi 254 (338)
T KOG0919|consen 244 YTHYTEGTGSI 254 (338)
T ss_pred ccceeecchHH
Confidence 99999999995
No 2
>PRK10458 DNA cytosine methylase; Provisional
Probab=100.00 E-value=1.1e-43 Score=332.58 Aligned_cols=218 Identities=23% Similarity=0.348 Sum_probs=175.9
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhC---CCCCccccCcccccccc----------------ccCCCCcEEEeCCC
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEE----------------INAMSPDVILMSPP 62 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~---~~~~~~~~dI~~~~~~~----------------~~~~~~Dll~~gpP 62 (250)
.||+++| +++|+++|+|+.|++||++|| |+..++++||++++..+ ++ ++|||+||||
T Consensus 103 lGfe~aG--~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p--~~DvL~gGpP 178 (467)
T PRK10458 103 RGFEAIG--GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIP--DHDVLLAGFP 178 (467)
T ss_pred HHHHHcC--CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCC--CCCEEEEcCC
Confidence 4788887 899999999999999999999 45556789999998542 33 7899999999
Q ss_pred CchhhhcCCCC--------CC-CCchhhHHHHHHHHccccCCCcEEEEccccCCCcc---hHHHHHHHHHHhCCCeEE--
Q psy3543 63 CQPFTRTGLQK--------DI-ADARCTALSYLIETIPAIPSLQCLLLENVKGFEGS---RSRDLITSMLTRAGFRFQ-- 128 (250)
Q Consensus 63 CQ~fS~ag~~~--------~~-~d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~---~~~~~i~~~L~~~GY~v~-- 128 (250)
||+||.+|+++ ++ .|+|+.||++++++|++.+ |++|+||||+|++++ +.++.+++.|+++||.+.
T Consensus 179 CQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~k-Pk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~ 257 (467)
T PRK10458 179 CQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKR-PAIFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADA 257 (467)
T ss_pred CCccchhcccccccccccccccCCccccHHHHHHHHHHHhC-CCEEEEeCcHhhhcccccHHHHHHHHHHHHcCCeEEec
Confidence 99999999654 33 3789999999999999999 999999999999874 589999999999999995
Q ss_pred -------EEEEccCCCCccccCceEEEEEEeCCCCCCCCCCcccCchhhhhhcCCccccCcCCCCCcccchhhhccCCCC
Q psy3543 129 -------EFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANTCNPLLSRMTLHGILDSTHP 201 (250)
Q Consensus 129 -------~~il~a~~~GvPq~R~R~~lva~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~d~Le~~~~ 201 (250)
+.+|||.+| |||+|+|+|+||++++.. + ...|.|+... ..+| ..+.+|+|+|++..+
T Consensus 258 ~~~g~~~~~vlna~~f-VPQ~R~RvfiVg~r~~~~-~-~~~f~~~~~~---~~~p----------~~~~~l~diL~~~~~ 321 (467)
T PRK10458 258 EDNGPDDPKIIDGKHF-LPQHRERIVLVGFRRDLN-L-KADFTLRDIS---ECYP----------AQRPTLAELLDPVVD 321 (467)
T ss_pred cccCcccceEeehhhC-CCccCcEEEEEEEeCCcc-c-ccCccccccc---ccCC----------CCCCCHHHhcCCCCC
Confidence 589999999 999999999999998860 0 0124332211 0111 112279999998775
Q ss_pred CCCcccccccCHHHHH---hc---------cccceeecCCCCcceeeccCCcceeec
Q psy3543 202 SGDLYRRYLVSDKDLL---RR---------FHVFDIVNGKASSTNCFTKAYTHYAEG 246 (250)
Q Consensus 202 ~~~~~~~y~~~~~~~~---~~---------~~~~div~p~~~~~~cftk~y~~~~~g 246 (250)
++|++++++|. ++ ++.++++.|++.++.|+|.+| +|..+
T Consensus 322 -----~ky~ls~~~~~~l~~~~~k~~~~g~g~~~~i~~~~~~~~~~~t~~~-ry~k~ 372 (467)
T PRK10458 322 -----AKYILTPVLWKYLYRYAKKHQAKGNGFGYGLVYPNNPQSVTRTLSA-RYYKD 372 (467)
T ss_pred -----cceeeCHHHHHHHHHHHhhccccCCCcceeeeecCCCCCccccccc-ccccC
Confidence 88999998775 22 567899999999999999998 45544
No 3
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=100.00 E-value=5.8e-42 Score=303.29 Aligned_cols=149 Identities=30% Similarity=0.474 Sum_probs=140.0
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
.||+++| +++++|+|+|+.|+++|++|||+. ++++||++++..++. .++|+|++|||||+||.+|++++.+|+|+.
T Consensus 15 ~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~-~~~D~l~~gpPCq~fS~ag~~~~~~d~r~~ 90 (275)
T cd00315 15 LGLEKAG--FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFI-PDIDLLTGGFPCQPFSIAGKRKGFEDTRGT 90 (275)
T ss_pred HHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcC-CCCCEEEeCCCChhhhHHhhcCCCCCchHH
Confidence 4888888 999999999999999999999987 578999999987742 279999999999999999999999999999
Q ss_pred HHHHHHHHccccCCCcEEEEccccCCCc---chHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 82 ALSYLIETIPAIPSLQCLLLENVKGFEG---SRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~i~~ENV~~~~~---~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
||++++++|+.++ |++|+||||+|+++ +..+..+++.|+++||++.+.+|||.+||+||+|+|+|+||++++.
T Consensus 91 L~~~~~~~i~~~~-P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~ 166 (275)
T cd00315 91 LFFEIIRILKEKK-PKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDL 166 (275)
T ss_pred HHHHHHHHHHhcC-CCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCC
Confidence 9999999999999 99999999999988 6789999999999999999999999999999999999999999987
No 4
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=100.00 E-value=6.6e-43 Score=313.21 Aligned_cols=148 Identities=28% Similarity=0.481 Sum_probs=136.1
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
.||+++| |++++|+|+|+.|++||++||| .+..+||++++..++++ ++|||+||||||+||.+|++++.+|+|+.
T Consensus 15 ~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~ 89 (335)
T PF00145_consen 15 LGLEQAG--FEVVWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGKRKGFDDPRNS 89 (335)
T ss_dssp HHHHHTT--EEEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTSTHHCCCCHTTS
T ss_pred HHHHhcC--cEEEEEeecCHHHHHhhhhccc--ccccccccccccccccc-cceEEEeccCCceEeccccccccccccch
Confidence 5899999 9999999999999999999999 56799999999999996 79999999999999999999999999999
Q ss_pred HHHHHHHHccccCCCcEEEEccccCCCcc---hHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 82 ALSYLIETIPAIPSLQCLLLENVKGFEGS---RSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~i~~ENV~~~~~~---~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
||++++++|++++ |++|+||||+|++++ ..++.+++.|+++||.+.+.+|||.+||+||+|+|+|+||++++.
T Consensus 90 L~~~~~~~v~~~~-Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ~R~R~fivg~r~~~ 165 (335)
T PF00145_consen 90 LFFEFLRIVKELK-PKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLNAADYGVPQNRERVFIVGIRKDL 165 (335)
T ss_dssp HHHHHHHHHHHHS--SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSBE-EEEEEEEEEGGG
T ss_pred hhHHHHHHHhhcc-ceEEEecccceeeccccccccccccccccccceeehhccccHhhCCCCCceeeEEEEEECCCC
Confidence 9999999999999 999999999999986 579999999999999999999999999999999999999999987
No 5
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.7e-41 Score=303.42 Aligned_cols=145 Identities=29% Similarity=0.479 Sum_probs=137.7
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
.||+++| +++++|+|+|+.|++||++|||+ .++++||.+++..+++ ++|+|+||||||+||.+|++++.+|+|+.
T Consensus 13 ~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~--~~dvl~gg~PCq~fS~ag~~~~~~d~r~~ 87 (315)
T TIGR00675 13 LGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIP--DFDILLGGFPCQPFSIAGKRKGFEDTRGT 87 (315)
T ss_pred HHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCC--CcCEEEecCCCcccchhcccCCCCCchhh
Confidence 5899988 99999999999999999999998 5678999999988887 79999999999999999999999999999
Q ss_pred HHHHHHHHccccCCCcEEEEccccCCCcc---hHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEe
Q psy3543 82 ALSYLIETIPAIPSLQCLLLENVKGFEGS---RSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKR 152 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~i~~ENV~~~~~~---~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~ 152 (250)
||++++++|++.+ |++|+||||+|+++. +.+..+++.|+++||.+.+.+|||++||+||+|+|+|+||++
T Consensus 88 L~~~~~r~i~~~~-P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r 160 (315)
T TIGR00675 88 LFFEIVRILKEKK-PKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFR 160 (315)
T ss_pred HHHHHHHHHhhcC-CCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEe
Confidence 9999999999999 999999999999873 579999999999999999999999999999999999999999
No 6
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-41 Score=307.51 Aligned_cols=150 Identities=29% Similarity=0.489 Sum_probs=142.7
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
.||+++| |++++|+|||+.|++||++||+...++..||.++..+.+...++|+|+||||||+||.||++++.+|+|++
T Consensus 18 lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~ 95 (328)
T COG0270 18 LGFEEAG--FEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGS 95 (328)
T ss_pred HHHHhcC--CeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhhcCcccCCcCccce
Confidence 4889999 99999999999999999999997667889999999998876579999999999999999999999999999
Q ss_pred HHHHHHHHccccCCCcEEEEccccCCCcc--hHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCC
Q psy3543 82 ALSYLIETIPAIPSLQCLLLENVKGFEGS--RSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 154 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~i~~ENV~~~~~~--~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~ 154 (250)
||++++++|.+++ |++|+||||+|++++ +.++.+++.|+++||.+.+.+|||.+||+||+|+|+|+||++++
T Consensus 96 L~~~~~r~I~~~~-P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~ 169 (328)
T COG0270 96 LFLEFIRLIEQLR-PKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRD 169 (328)
T ss_pred eeHHHHHHHHhhC-CCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCc
Confidence 9999999999999 999999999999985 69999999999999999999999999999999999999999985
No 7
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.37 E-value=0.091 Score=45.96 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=67.0
Q ss_pred EEEEEeCcHHHHHHHHHhCCC--CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCC---CCCchhh------
Q psy3543 13 VVTAIDINTSANSVYKHNFPR--TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKD---IADARCT------ 81 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~--~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~---~~d~r~~------ 81 (250)
.+.++|+++.|.+.-+.|... ..++++|+.+.....+.. .+|+++..|||.+.+..+.... ..+++..
T Consensus 112 ~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~-~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~d 190 (251)
T TIGR03704 112 ELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRG-RVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGAD 190 (251)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCC-CEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCc
Confidence 468899999999998888532 235677876543333322 6899999999998764432110 1112211
Q ss_pred ---HHHHHHHHc-cccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE
Q psy3543 82 ---ALSYLIETI-PAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 82 ---l~~~~~~ii-~~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
.+..+++-+ +.++ | -.++||-- ......++..|++.||......
T Consensus 191 gl~~~~~i~~~a~~~L~-~gG~l~l~~~-----~~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 191 GLDVLRRVAAGAPDWLA-PGGHLLVETS-----ERQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred HHHHHHHHHHHHHHhcC-CCCEEEEEEC-----cchHHHHHHHHHHCCCCceeeE
Confidence 233444322 2334 5 34556632 2345678889999998776544
No 8
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.88 E-value=0.085 Score=44.27 Aligned_cols=96 Identities=23% Similarity=0.306 Sum_probs=59.8
Q ss_pred CCcEEEEEEeCcHHHHHHHHHhCC----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHH
Q psy3543 9 FSLEVVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALS 84 (250)
Q Consensus 9 ~~~~~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~ 84 (250)
+|-..|.++|+|+.|.++.+.|-. +..++..||+++.. .+|.+++-|| -|.+..-.| | ..+.
T Consensus 66 lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~------~~dtvimNPP------FG~~~rhaD-r-~Fl~ 131 (198)
T COG2263 66 LGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRG------KFDTVIMNPP------FGSQRRHAD-R-PFLL 131 (198)
T ss_pred cCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCC------ccceEEECCC------CccccccCC-H-HHHH
Confidence 457899999999999999999976 33445566666543 6899999999 443321122 2 1222
Q ss_pred HHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEE
Q psy3543 85 YLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQE 129 (250)
Q Consensus 85 ~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~ 129 (250)
..+++-+ .+. .+-+....+-+.+....+|+.+..
T Consensus 132 ~Ale~s~-----vVY------siH~a~~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 132 KALEISD-----VVY------SIHKAGSRDFVEKFAADLGGTVTH 165 (198)
T ss_pred HHHHhhh-----eEE------EeeccccHHHHHHHHHhcCCeEEE
Confidence 2222221 111 122233566777788889998753
No 9
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=93.04 E-value=0.11 Score=38.95 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=38.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCC------CccccCccccccccccCCCCcEEEeCCCCchh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRT------NLRGRNIQSFSIEEINAMSPDVILMSPPCQPF 66 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~------~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~f 66 (250)
...+.++|+|+.+++.-+.|++.. .++.+|+.++. +.++...+|++++.||.-+.
T Consensus 23 ~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~D~Iv~npP~~~~ 83 (117)
T PF13659_consen 23 AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP-EPLPDGKFDLIVTNPPYGPR 83 (117)
T ss_dssp TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH-HTCTTT-EEEEEE--STTSB
T ss_pred CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch-hhccCceeEEEEECCCCccc
Confidence 357789999999999999998643 34677777665 23344489999999997443
No 10
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=92.26 E-value=1.3 Score=36.20 Aligned_cols=115 Identities=18% Similarity=0.256 Sum_probs=64.6
Q ss_pred EEEEEeCcHHHHHHHHHhCC----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCC--------CCCCchh
Q psy3543 13 VVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQK--------DIADARC 80 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~--------~~~d~r~ 80 (250)
.+.++|+++.+.+.-+.|.. ...++.+|+.+.. .. .+|+++.+||+.+.+..-+.. +..+.+
T Consensus 43 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----~~-~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~- 116 (179)
T TIGR00537 43 CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV----RG-KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGR- 116 (179)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc----CC-cccEEEECCCCCCCcchhcccchhhhhhhcCCchH-
Confidence 68899999999888777753 2223445554321 22 689999999997554321110 011111
Q ss_pred hHHHHHHHHcc-ccCCC--cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccC
Q psy3543 81 TALSYLIETIP-AIPSL--QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSR 143 (250)
Q Consensus 81 ~l~~~~~~ii~-~~~~P--~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R 143 (250)
.++..+++.+. .++ | +++++++... ....+++.|++.||++... ..+|+|..+
T Consensus 117 ~~~~~~l~~~~~~Lk-~gG~~~~~~~~~~-----~~~~~~~~l~~~gf~~~~~----~~~~~~~~~ 172 (179)
T TIGR00537 117 KVIDRFLDELPEILK-EGGRVQLIQSSLN-----GEPDTFDKLDERGFRYEIV----AERGLFFEE 172 (179)
T ss_pred HHHHHHHHhHHHhhC-CCCEEEEEEeccC-----ChHHHHHHHHhCCCeEEEE----EEeecCceE
Confidence 23344443322 233 4 5555553221 2567788899999876532 245665443
No 11
>KOG3191|consensus
Probab=92.12 E-value=1.7 Score=36.46 Aligned_cols=112 Identities=20% Similarity=0.228 Sum_probs=64.5
Q ss_pred CcEEEEEEeCcHHHHHHH----HHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCC--------CCCCCC
Q psy3543 10 SLEVVTAIDINTSANSVY----KHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL--------QKDIAD 77 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y----~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~--------~~~~~d 77 (250)
+.-+..+.|||+.|+++- +.|--+..++..|+...-.. ..+|+|+.-||--+-|--=. ..|..|
T Consensus 67 ~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~----~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~ 142 (209)
T KOG3191|consen 67 PQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRN----ESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKD 142 (209)
T ss_pred CCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhcc----CCccEEEECCCcCcCCcccchhHHHHHHHhcCcc
Confidence 566788999999997763 33433333445565443322 38999999999555442111 112233
Q ss_pred chhhHHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEE
Q psy3543 78 ARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQE 129 (250)
Q Consensus 78 ~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~ 129 (250)
.| ...-.++..++.+-.|+-++.=++- ..+.-+.+++.|+..||.+..
T Consensus 143 Gr-~v~d~ll~~v~~iLSp~Gv~Ylv~~---~~N~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 143 GR-EVTDRLLPQVPDILSPRGVFYLVAL---RANKPKEILKILEKKGYGVRI 190 (209)
T ss_pred hH-HHHHHHHhhhhhhcCcCceEEeeeh---hhcCHHHHHHHHhhcccceeE
Confidence 33 1233344444433236655544433 234567788899999998764
No 12
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=91.57 E-value=0.87 Score=42.82 Aligned_cols=107 Identities=15% Similarity=0.291 Sum_probs=65.2
Q ss_pred EEEEEEeCcHHHHHHHHHhCC-----CCCccccCcccccccc-ccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEE-INAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~-~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
..|.++|+++.+.+.-+.|.. +..++.+|+.+..+.. .....+|++++.||. .| +...
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr-----~G-----------~~~~ 378 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR-----KG-----------CAAE 378 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC-----CC-----------CCHH
Confidence 467999999999988888752 3345677776543221 112257999999992 12 1134
Q ss_pred HHHHccccCCCcEEE-EccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccC
Q psy3543 86 LIETIPAIPSLQCLL-LENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSR 143 (250)
Q Consensus 86 ~~~ii~~~~~P~~i~-~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R 143 (250)
+++.+..++ |+-++ +..- ..++..-+..|.+.||.+... -+.|. -||+.
T Consensus 379 ~l~~l~~l~-~~~ivyvsc~-----p~tlard~~~l~~~gy~~~~~--~~~Dm-FP~T~ 428 (431)
T TIGR00479 379 VLRTIIELK-PERIVYVSCN-----PATLARDLEFLCKEGYGITWV--QPVDM-FPHTA 428 (431)
T ss_pred HHHHHHhcC-CCEEEEEcCC-----HHHHHHHHHHHHHCCeeEEEE--EEecc-CCCCC
Confidence 455555566 75443 4321 246666677888899987653 33333 46553
No 13
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=91.11 E-value=1.3 Score=44.51 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=77.8
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCC-------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPR-------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTAL 83 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~-------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~ 83 (250)
...|.++|+++.|.+.-+.|+.. ..++++|+.++.. .+ ...+|+++.-||.-.-+.... ...+. ...+
T Consensus 561 a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~-~~-~~~fDlIilDPP~f~~~~~~~--~~~~~-~~~y 635 (702)
T PRK11783 561 AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLK-EA-REQFDLIFIDPPTFSNSKRME--DSFDV-QRDH 635 (702)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHH-Hc-CCCcCEEEECCCCCCCCCccc--hhhhH-HHHH
Confidence 55789999999999999888631 2345667655432 12 237999999999755332110 11111 1122
Q ss_pred HHHHHH-ccccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEE--EEccCCCCccccCceEEEEE
Q psy3543 84 SYLIET-IPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF--LLSPTQFGVPNSRTRYYLIA 150 (250)
Q Consensus 84 ~~~~~i-i~~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~--il~a~~~GvPq~R~R~~lva 150 (250)
..++.. ++.++ | -.+++++-..- +....+.+.+.||.+... .-.+.||=++.+..|.|.|.
T Consensus 636 ~~l~~~a~~lL~-~gG~l~~~~~~~~-----~~~~~~~~~~~g~~~~~i~~~~~~~Dhp~~~~~~~~~~~~ 700 (702)
T PRK11783 636 VALIKDAKRLLR-PGGTLYFSNNKRG-----FKMDEEGLAKLGLKAEEITAKTLPPDFARNPKIHNCWLIT 700 (702)
T ss_pred HHHHHHHHHHcC-CCCEEEEEeCCcc-----CChhHHHHHhCCCeEEEEecCCCCCCCCCCcccceeEEEe
Confidence 333332 22334 4 45556655432 223377788889988644 35677887888889999886
No 14
>PRK01581 speE spermidine synthase; Validated
Probab=90.80 E-value=5.3 Score=37.09 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=77.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhC------------CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCc
Q psy3543 11 LEVVTAIDINTSANSVYKHNF------------PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADA 78 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~------------~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~ 78 (250)
.+-|.++|+|+...+.-+..+ |...++.+|..++.... . ..+|+++..+| .|. + ..
T Consensus 174 v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-~-~~YDVIIvDl~-DP~---~------~~ 241 (374)
T PRK01581 174 VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-S-SLYDVIIIDFP-DPA---T------EL 241 (374)
T ss_pred CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-C-CCccEEEEcCC-Ccc---c------cc
Confidence 567889999999888777521 22224456666543221 1 26899999875 111 1 11
Q ss_pred hhhHH-HHHHHHcc-ccCCCcEEEEccccCC-CcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 79 RCTAL-SYLIETIP-AIPSLQCLLLENVKGF-EGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 79 r~~l~-~~~~~ii~-~~~~P~~i~~ENV~~~-~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
-+.|+ .++++.+. .++ |.-+++=+.... .....+..+.+.|++.|+.+.........||- ...|++|++.+.
T Consensus 242 ~~~LyT~EFy~~~~~~Lk-PgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~----~WgF~~as~~~~ 316 (374)
T PRK01581 242 LSTLYTSELFARIATFLT-EDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGT----DWGFHIAANSAY 316 (374)
T ss_pred hhhhhHHHHHHHHHHhcC-CCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCC----ceEEEEEeCCcc
Confidence 12344 34555443 345 765554333222 22345567889999999999877766666765 288999987654
No 15
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=90.70 E-value=0.47 Score=38.95 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=35.3
Q ss_pred cEEEEEEeCcHHHHHHHHHhC---C---CCCccccCccccccccccCCCCcEEEeCCCCchhhhcC
Q psy3543 11 LEVVTAIDINTSANSVYKHNF---P---RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTG 70 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~---~---~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag 70 (250)
|+.|.|+|+|+.-.+..++|- + ...++++|..++....-...-+|++++|||.-+-+=..
T Consensus 21 ~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWGGp~Y~~ 86 (163)
T PF09445_consen 21 FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWGGPSYSK 86 (163)
T ss_dssp T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BSSGGGGG
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCCCccccc
Confidence 678999999999999999984 2 12356778777654321111169999999988766444
No 16
>PHA03412 putative methyltransferase; Provisional
Probab=90.28 E-value=0.48 Score=41.32 Aligned_cols=49 Identities=12% Similarity=0.227 Sum_probs=40.5
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCch
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQP 65 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~ 65 (250)
.|.++|+|+.|.+.-+.|.+...+++.|+..... . ..+|++++-||=-.
T Consensus 78 ~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~---~-~~FDlIIsNPPY~~ 126 (241)
T PHA03412 78 EIVCVELNHTYYKLGKRIVPEATWINADALTTEF---D-TLFDMAISNPPFGK 126 (241)
T ss_pred EEEEEECCHHHHHHHHhhccCCEEEEcchhcccc---c-CCccEEEECCCCCC
Confidence 6889999999999999999888788888876432 2 27999999999554
No 17
>PRK03612 spermidine synthase; Provisional
Probab=89.66 E-value=3.2 Score=40.25 Aligned_cols=125 Identities=16% Similarity=0.226 Sum_probs=77.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhC------------CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCc
Q psy3543 11 LEVVTAIDINTSANSVYKHNF------------PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADA 78 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~------------~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~ 78 (250)
.+.+.++|+|+...+.-+.|+ |...++.+|..+.... .+ ..+|+++..+|-.. +. +
T Consensus 321 v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-~~-~~fDvIi~D~~~~~----~~-----~- 388 (521)
T PRK03612 321 VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-LA-EKFDVIIVDLPDPS----NP-----A- 388 (521)
T ss_pred cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-CC-CCCCEEEEeCCCCC----Cc-----c-
Confidence 367899999999999988752 2233455666654322 12 27899999977321 10 0
Q ss_pred hhhHHH-HHHHHc-cccCCCcEEEEcccc-CCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeC
Q psy3543 79 RCTALS-YLIETI-PAIPSLQCLLLENVK-GFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153 (250)
Q Consensus 79 r~~l~~-~~~~ii-~~~~~P~~i~~ENV~-~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~ 153 (250)
-+.++. ++++.+ +.++ |.-+++=|.. -+...+.+..+.+.|++.|+.+......-..|| ..-|++|++.
T Consensus 389 ~~~L~t~ef~~~~~~~L~-pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~~~~~~vps~g-----~w~f~~as~~ 460 (521)
T PRK03612 389 LGKLYSVEFYRLLKRRLA-PDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATTPYHVNVPSFG-----EWGFVLAGAG 460 (521)
T ss_pred hhccchHHHHHHHHHhcC-CCeEEEEecCCcccchHHHHHHHHHHHHcCCEEEEEEeCCCCcc-----hhHHHeeeCC
Confidence 012222 344333 3445 7666655543 233456788899999999997776666666665 5668888664
No 18
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=89.34 E-value=1.8 Score=40.01 Aligned_cols=102 Identities=15% Similarity=0.256 Sum_probs=60.6
Q ss_pred EEEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.-|.++|+++.|.+.-+.|.. +..++.+|+.+.... .. ..+|+++.-|| +. | +-..+
T Consensus 256 ~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-~~-~~~D~vi~DPP-----r~----G-------~~~~~ 317 (374)
T TIGR02085 256 TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-QM-SAPELVLVNPP-----RR----G-------IGKEL 317 (374)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-cC-CCCCEEEECCC-----CC----C-------CcHHH
Confidence 468999999999998888752 223556677655422 11 15899999999 22 2 11334
Q ss_pred HHHccccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCcccc
Q psy3543 87 IETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNS 142 (250)
Q Consensus 87 ~~ii~~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~ 142 (250)
++.+..++ | +.+.++==| .++..=+..| .||.+... .+.|. -||+
T Consensus 318 l~~l~~~~-p~~ivyvsc~p-----~TlaRDl~~L--~gy~l~~~--~~~Dm-FPqT 363 (374)
T TIGR02085 318 CDYLSQMA-PKFILYSSCNA-----QTMAKDIAEL--SGYQIERV--QLFDM-FPHT 363 (374)
T ss_pred HHHHHhcC-CCeEEEEEeCH-----HHHHHHHHHh--cCceEEEE--EEecc-CCCC
Confidence 45555566 6 555555322 2444444555 68988753 33333 4554
No 19
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=88.00 E-value=2.8 Score=39.27 Aligned_cols=122 Identities=18% Similarity=0.185 Sum_probs=75.2
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCCC-------CCccccCccccccccccC-CCCcEEEeCCCCchhhhcCCCCCCCCc-h-
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFPR-------TNLRGRNIQSFSIEEINA-MSPDVILMSPPCQPFTRTGLQKDIADA-R- 79 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~~-------~~~~~~dI~~~~~~~~~~-~~~Dll~~gpPCQ~fS~ag~~~~~~d~-r- 79 (250)
|..-|.++|++..|.+.-+.|+.- ..++++|+-++-...... ..+||++.-|| .|++.- ++..+- |
T Consensus 239 GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPP--sF~r~k--~~~~~~~rd 314 (393)
T COG1092 239 GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPP--SFARSK--KQEFSAQRD 314 (393)
T ss_pred CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCc--ccccCc--ccchhHHHH
Confidence 566788999999999999999631 125667776665443332 37999999999 233221 122111 1
Q ss_pred -hhHHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEE--EEccCCC
Q psy3543 80 -CTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF--LLSPTQF 137 (250)
Q Consensus 80 -~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~--il~a~~~ 137 (250)
..|....++++.- . ..+++.=|-..+-.....+.+.+.+...|..+.+. ..-+.|+
T Consensus 315 y~~l~~~~~~iL~p-g-G~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~ 373 (393)
T COG1092 315 YKDLNDLALRLLAP-G-GTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIEGEGQPPDH 373 (393)
T ss_pred HHHHHHHHHHHcCC-C-CEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEeeccCCCCCc
Confidence 1133333333321 1 37777777777766667778888888887776654 3445555
No 20
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=86.45 E-value=9.9 Score=32.95 Aligned_cols=121 Identities=26% Similarity=0.301 Sum_probs=65.8
Q ss_pred EEEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCC-CCCC--CCch----
Q psy3543 12 EVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL-QKDI--ADAR---- 79 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~-~~~~--~d~r---- 79 (250)
..+.++|+++.+.+.-+.|.. ...++.+|+.+. +....+|+++..||+-+.+.... .... ..+.
T Consensus 133 ~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~----~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~ 208 (275)
T PRK09328 133 AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP----LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALF 208 (275)
T ss_pred CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc----CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhc
Confidence 357899999999988888854 222345555322 11237899999999977654320 0000 1111
Q ss_pred ----h-hHHHHHHHHc-cccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEE
Q psy3543 80 ----C-TALSYLIETI-PAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYL 148 (250)
Q Consensus 80 ----~-~l~~~~~~ii-~~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~l 148 (250)
+ ..+..+++-+ +.++ | -++++|- | ......+...|++.||.-.... .++ ..+.|+++
T Consensus 209 ~g~~g~~~~~~~~~~~~~~Lk-~gG~l~~e~--g---~~~~~~~~~~l~~~gf~~v~~~---~d~---~~~~r~~~ 272 (275)
T PRK09328 209 GGEDGLDFYRRIIEQAPRYLK-PGGWLLLEI--G---YDQGEAVRALLAAAGFADVETR---KDL---AGRDRVVL 272 (275)
T ss_pred CCCCHHHHHHHHHHHHHHhcc-cCCEEEEEE--C---chHHHHHHHHHHhCCCceeEEe---cCC---CCCceEEE
Confidence 1 1223333322 2334 5 4555653 2 2344567778888998622221 233 25778665
No 21
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=85.54 E-value=7 Score=35.92 Aligned_cols=97 Identities=23% Similarity=0.174 Sum_probs=69.5
Q ss_pred EEEEeCcHHHHHHHHHhCC-----C-CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHH
Q psy3543 14 VTAIDINTSANSVYKHNFP-----R-TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLI 87 (250)
Q Consensus 14 v~a~did~~a~~~y~~N~~-----~-~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~ 87 (250)
|+|+|+||+|.+-.+.|.- + ...+++|.+++.+.- ..+|-++++-|= + .-..+...+
T Consensus 214 V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDrIim~~p~----------~----a~~fl~~A~ 276 (341)
T COG2520 214 VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---GVADRIIMGLPK----------S----AHEFLPLAL 276 (341)
T ss_pred EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---ccCCEEEeCCCC----------c----chhhHHHHH
Confidence 9999999999999999852 1 224688888886643 268999999881 1 113455677
Q ss_pred HHccccCCCcEEEEccccCCCcc-hHHHHHHHHHHhCCCeEEE
Q psy3543 88 ETIPAIPSLQCLLLENVKGFEGS-RSRDLITSMLTRAGFRFQE 129 (250)
Q Consensus 88 ~ii~~~~~P~~i~~ENV~~~~~~-~~~~~i~~~L~~~GY~v~~ 129 (250)
++++. . .-.-+-|||+.-... .....+.+...++||++..
T Consensus 277 ~~~k~-~-g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v 317 (341)
T COG2520 277 ELLKD-G-GIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEV 317 (341)
T ss_pred HHhhc-C-cEEEEEeccchhhcccchHHHHHHHHhhccCcceE
Confidence 77776 4 688888999876532 3667777777888896643
No 22
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=85.51 E-value=1.2 Score=36.75 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=47.8
Q ss_pred EEEEeCcHHHHHHHHHhCCCCC------ccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHH
Q psy3543 14 VTAIDINTSANSVYKHNFPRTN------LRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLI 87 (250)
Q Consensus 14 v~a~did~~a~~~y~~N~~~~~------~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~ 87 (250)
+.++|+|+.+...-+.|..... +.+.|..++. +....+|+++.-|| -|.+-+....-..|+..++
T Consensus 64 ~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~---~~~~~~d~IvtnPP------yG~r~~~~~~~~~ly~~~~ 134 (179)
T PF01170_consen 64 IIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP---LPDGSVDAIVTNPP------YGRRLGSKKDLEKLYRQFL 134 (179)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG---GTTSBSCEEEEE--------STTSHCHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc---cccCCCCEEEECcc------hhhhccCHHHHHHHHHHHH
Confidence 7899999999998888863221 2344555554 22236899999999 5765443333356888888
Q ss_pred HHccc-cCCCcEE
Q psy3543 88 ETIPA-IPSLQCL 99 (250)
Q Consensus 88 ~ii~~-~~~P~~i 99 (250)
+.+.. ++ |..+
T Consensus 135 ~~~~~~l~-~~~v 146 (179)
T PF01170_consen 135 RELKRVLK-PRAV 146 (179)
T ss_dssp HHHHCHST-TCEE
T ss_pred HHHHHHCC-CCEE
Confidence 87776 55 6433
No 23
>PRK14968 putative methyltransferase; Provisional
Probab=84.93 E-value=12 Score=30.13 Aligned_cols=49 Identities=29% Similarity=0.344 Sum_probs=32.2
Q ss_pred EEEEEeCcHHHHHHHHHhCCC-------CCccccCccccccccccCCCCcEEEeCCCCch
Q psy3543 13 VVTAIDINTSANSVYKHNFPR-------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQP 65 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~-------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~ 65 (250)
-+.++|+++.+.+..+.|... ..++..|+.+ .+....+|++++.||..+
T Consensus 47 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 47 KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE----PFRGDKFDVILFNPPYLP 102 (188)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc----cccccCceEEEECCCcCC
Confidence 567899999998887766421 2234455433 222226899999999754
No 24
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=84.85 E-value=2.1 Score=35.54 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=53.3
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccc--cccccCCCCcEEEeCCCCchhh
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFS--IEEINAMSPDVILMSPPCQPFT 67 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~--~~~~~~~~~Dll~~gpPCQ~fS 67 (250)
++-..|+.=+.+.++|++++-.......||+..++++|..++. ..+.+...+|.++.|.|--.|+
T Consensus 65 aIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P 131 (194)
T COG3963 65 AILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFP 131 (194)
T ss_pred HHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccccCc
Confidence 4566777778899999999999999999999999999988876 3455555799999999954444
No 25
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=84.72 E-value=9.8 Score=32.34 Aligned_cols=108 Identities=23% Similarity=0.273 Sum_probs=60.1
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCC-C--CCCchh----
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQK-D--IADARC---- 80 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~-~--~~d~r~---- 80 (250)
.+.++|+++.+.+.-+.|.. ...++++|+.+. ++...+|++++.||+.+.+....-. . ...+..
T Consensus 113 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~ 188 (251)
T TIGR03534 113 RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP----LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFG 188 (251)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcC
Confidence 57899999999887777642 233455666442 2223789999999988765432110 0 001111
Q ss_pred -----hHHHHHHHHc-cccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEE
Q psy3543 81 -----TALSYLIETI-PAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 81 -----~l~~~~~~ii-~~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
..+..+++.+ +.++ | -.+++|. .......+.+.|++.||.....
T Consensus 189 ~~~~~~~~~~~i~~~~~~L~-~gG~~~~~~-----~~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 189 GEDGLDFYRRIIAQAPRLLK-PGGWLLLEI-----GYDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred CCcHHHHHHHHHHHHHHhcc-cCCEEEEEE-----CccHHHHHHHHHHhCCCCceEE
Confidence 1122333322 2334 5 3455553 1234567788888899865443
No 26
>PHA03411 putative methyltransferase; Provisional
Probab=84.67 E-value=1.6 Score=38.88 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=66.3
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCC-----CCCCchhhH-HHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQK-----DIADARCTA-LSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~-----~~~d~r~~l-~~~~ 86 (250)
-|.++|+++.+.+.-+.|++...++++|+.+.... ..+|++++.||-........+. |....+..+ |..+
T Consensus 90 ~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~----~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~ 165 (279)
T PHA03411 90 KIVCVELNPEFARIGKRLLPEAEWITSDVFEFESN----EKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQK 165 (279)
T ss_pred EEEEEECCHHHHHHHHHhCcCCEEEECchhhhccc----CCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHH
Confidence 57899999999999999988777778898876421 2689999999976643322111 122222222 3333
Q ss_pred HHH-ccccCCCcEEEEccccC---CCcchHHHHHHHHHHhCCCeEEE
Q psy3543 87 IET-IPAIPSLQCLLLENVKG---FEGSRSRDLITSMLTRAGFRFQE 129 (250)
Q Consensus 87 ~~i-i~~~~~P~~i~~ENV~~---~~~~~~~~~i~~~L~~~GY~v~~ 129 (250)
+.= -..++ |.-.+.+-+.+ +-.+-.-+.....|++.|+....
T Consensus 166 l~~v~~~L~-p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 166 FADVGYFIV-PTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred HhhhHheec-CCceEEEEEeccccccccCCHHHHHHHHHhcCcEecC
Confidence 322 22334 54333333322 11122345677788888977653
No 27
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=83.61 E-value=2.2 Score=33.14 Aligned_cols=37 Identities=27% Similarity=0.526 Sum_probs=31.8
Q ss_pred EEEccccCCCcchHHHHHHHHHHhCCCeEEEE-EEccCCCCcc
Q psy3543 99 LLLENVKGFEGSRSRDLITSMLTRAGFRFQEF-LLSPTQFGVP 140 (250)
Q Consensus 99 i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~-il~a~~~GvP 140 (250)
+++||-|| .+....+.|.+.|-+++.+ +-++.+||+-
T Consensus 8 vFlENk~G-----RL~~~~~~L~eagINiRA~tiAdt~dFGIi 45 (142)
T COG4747 8 VFLENKPG-----RLASVANKLKEAGINIRAFTIADTGDFGII 45 (142)
T ss_pred EEecCCcc-----hHHHHHHHHHHcCCceEEEEeccccCcceE
Confidence 78999998 4667889999999999876 7899999973
No 28
>KOG3420|consensus
Probab=83.55 E-value=1.8 Score=35.06 Aligned_cols=61 Identities=25% Similarity=0.318 Sum_probs=43.4
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCCCCC----ccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCch
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFPRTN----LRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADAR 79 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~~~~----~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r 79 (250)
+-+.|.++|||+.|.+++..|-.+.. +.++||.+..... ..+|..+.-|| -|.++...|.+
T Consensus 70 ~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~---g~fDtaviNpp------FGTk~~~aDm~ 134 (185)
T KOG3420|consen 70 KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKG---GIFDTAVINPP------FGTKKKGADME 134 (185)
T ss_pred CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccC---CeEeeEEecCC------CCcccccccHH
Confidence 46889999999999999999965432 4566776654433 36899999999 56544334543
No 29
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=83.33 E-value=3 Score=34.98 Aligned_cols=107 Identities=9% Similarity=-0.007 Sum_probs=60.0
Q ss_pred EEEEEEeCcHHHHHHHHHhC-----CCCCccccCc-cccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNF-----PRTNLRGRNI-QSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~-----~~~~~~~~dI-~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
..+.++|+++.+++.-+.|. ++..++++|+ ..+. ..++...+|+++..+|.+....... +.. .....++.+
T Consensus 65 ~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-~~~~~~~~D~V~~~~~~p~~~~~~~-~~~-~~~~~~l~~ 141 (202)
T PRK00121 65 INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-DMFPDGSLDRIYLNFPDPWPKKRHH-KRR-LVQPEFLAL 141 (202)
T ss_pred ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-HHcCccccceEEEECCCCCCCcccc-ccc-cCCHHHHHH
Confidence 46899999999888776654 2334567777 4442 2233336899998776432221111 000 012234445
Q ss_pred HHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEE
Q psy3543 86 LIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQ 128 (250)
Q Consensus 86 ~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~ 128 (250)
+.++++.- =.+++..+.. ..+..+++.+++.|+.+.
T Consensus 142 i~~~Lkpg--G~l~i~~~~~-----~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 142 YARKLKPG--GEIHFATDWE-----GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred HHHHcCCC--CEEEEEcCCH-----HHHHHHHHHHHhCccccc
Confidence 55555421 2444444433 356778899999997666
No 30
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=80.79 E-value=0.73 Score=38.37 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=35.8
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCC------CccccCcccccccc-ccCCCCcEEEeCCC
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRT------NLRGRNIQSFSIEE-INAMSPDVILMSPP 62 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~~N~~~~------~~~~~dI~~~~~~~-~~~~~~Dll~~gpP 62 (250)
|||-..-|.+-|..+|.|+.|+.+.+.|.... .++..|....-... .....+|++++-||
T Consensus 57 GlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPP 123 (183)
T PF03602_consen 57 GLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPP 123 (183)
T ss_dssp HHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--S
T ss_pred HHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCC
Confidence 45555556778999999999999999996422 23445543332211 12337899999999
No 31
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=80.23 E-value=9.9 Score=35.98 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=59.7
Q ss_pred EEEEEeCcHHHHHHHHHhCCC-----CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCC---CCchh----
Q psy3543 13 VVTAIDINTSANSVYKHNFPR-----TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDI---ADARC---- 80 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~-----~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~---~d~r~---- 80 (250)
.|+|+|+++...+..+.|... ..++++|..++.+ ...+|+++.-+||.+.....+.... .+++.
T Consensus 277 ~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~----~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l 352 (445)
T PRK14904 277 QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP----EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAEL 352 (445)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc----CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHH
Confidence 689999999998888777532 2344566655432 2268999999999888776643221 11110
Q ss_pred -hHHHHHHH-HccccCCCcEEEEccccCCCcchHHHHHHHHHHhC
Q psy3543 81 -TALSYLIE-TIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRA 123 (250)
Q Consensus 81 -~l~~~~~~-ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~ 123 (250)
.+-..+++ ..+.++ |--.++=....+...+.-..+...|+..
T Consensus 353 ~~~q~~iL~~a~~~lk-pgG~lvystcs~~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 353 VGLQAELLDHAASLLK-PGGVLVYATCSIEPEENELQIEAFLQRH 396 (445)
T ss_pred HHHHHHHHHHHHHhcC-CCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 01112222 222334 6545544555554444444555566654
No 32
>PRK14967 putative methyltransferase; Provisional
Probab=79.49 E-value=31 Score=29.16 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=58.7
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCC-C----CC-Cchh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQK-D----IA-DARC 80 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~-~----~~-d~r~ 80 (250)
...+.++|+++.+.+.-+.|.. ...+++.|+.+. ++...+|++++.||-.+-+..+... + .. +..+
T Consensus 59 ~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~ 134 (223)
T PRK14967 59 AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA----VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDG 134 (223)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh----ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcH
Confidence 4467899999999887666642 122445665442 2233789999999855443322111 0 00 0111
Q ss_pred -hHHHHHHH-HccccCCC--cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE
Q psy3543 81 -TALSYLIE-TIPAIPSL--QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 81 -~l~~~~~~-ii~~~~~P--~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
.++..+++ +.+.++ | +++++.+-. .....+++.|++.||.+....
T Consensus 135 ~~~~~~~l~~a~~~Lk-~gG~l~~~~~~~-----~~~~~~~~~l~~~g~~~~~~~ 183 (223)
T PRK14967 135 RAVLDRLCDAAPALLA-PGGSLLLVQSEL-----SGVERTLTRLSEAGLDAEVVA 183 (223)
T ss_pred HHHHHHHHHHHHHhcC-CCcEEEEEEecc-----cCHHHHHHHHHHCCCCeEEEE
Confidence 12333333 333444 4 333322111 134567788888898765543
No 33
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=79.46 E-value=4.4 Score=28.06 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=36.6
Q ss_pred cEEEEEEeCcHHHHHHHHHh---C--CCCCccccCccccccccccCCCCcEEEeCCCCchh
Q psy3543 11 LEVVTAIDINTSANSVYKHN---F--PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPF 66 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N---~--~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~f 66 (250)
...+.++|+++.+....+.+ . ....++..|+.+.... ....+|+++..+||..+
T Consensus 21 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 21 GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE--ADESFDVIISDPPLHHL 79 (107)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc--cCCceEEEEEccceeeh
Confidence 45778999999998877622 1 1223456676665431 12278999999999887
No 34
>PLN02823 spermine synthase
Probab=78.69 E-value=51 Score=30.19 Aligned_cols=128 Identities=14% Similarity=0.141 Sum_probs=78.7
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCC---------CccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRT---------NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~---------~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
.+-+.++|+|+...+.-+.+++.. .++.+|..+.-... ...+|+++.-.+ .|.+ .| +-..
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvIi~D~~-dp~~-~~-------~~~~ 195 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVIIGDLA-DPVE-GG-------PCYQ 195 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEEEecCC-Cccc-cC-------cchh
Confidence 567889999999999988887531 24455655543221 227899998864 2221 11 1112
Q ss_pred HH-HHHHH-Hc-cccCCCcEEEEccccC--C-CcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCC
Q psy3543 82 AL-SYLIE-TI-PAIPSLQCLLLENVKG--F-EGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 154 (250)
Q Consensus 82 l~-~~~~~-ii-~~~~~P~~i~~ENV~~--~-~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~ 154 (250)
|| .++++ .+ +.++ |.-+++=|+.. + ...+.+..+.+.|++..-.+......-..||- ..-|++|++..
T Consensus 196 Lyt~eF~~~~~~~~L~-p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~~vPsf~~----~w~f~~aS~~~ 269 (336)
T PLN02823 196 LYTKSFYERIVKPKLN-PGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTAHVPSFAD----TWGWVMASDHP 269 (336)
T ss_pred hccHHHHHHHHHHhcC-CCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEeecCCCCC----ceEEEEEeCCc
Confidence 33 24554 33 4556 88777767643 2 23556788888888876666666555555764 26789998754
No 35
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=77.55 E-value=3.9 Score=36.82 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=34.9
Q ss_pred EEEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.-|.++|+++.|.+.-+.|.. +..++.+|+.++... .. ..+|+++.-||
T Consensus 196 ~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-~~-~~~D~Vv~dPP 249 (315)
T PRK03522 196 MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-QG-EVPDLVLVNPP 249 (315)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-cC-CCCeEEEECCC
Confidence 468999999999988887752 233566777665432 11 25899999999
No 36
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=77.34 E-value=10 Score=35.78 Aligned_cols=107 Identities=11% Similarity=0.135 Sum_probs=62.2
Q ss_pred EEEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccc-cccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIE-EINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~-~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
..|.|+|+++.|.+.-+.|.. +..++.+|+.+...+ .+....+|+++.-||+.+.. +
T Consensus 320 ~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~-----------------~ 382 (443)
T PRK13168 320 AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAA-----------------E 382 (443)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChH-----------------H
Confidence 467899999999998888742 234567777654321 12222589999999964211 1
Q ss_pred HHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccC
Q psy3543 86 LIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSR 143 (250)
Q Consensus 86 ~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R 143 (250)
.++.+..+...+++.+.-=| .++..=+..|.+.||.+.... +-|. -||+.
T Consensus 383 ~~~~l~~~~~~~ivyvSCnp-----~tlaRDl~~L~~~gY~l~~i~--~~Dm-FP~T~ 432 (443)
T PRK13168 383 VMQALAKLGPKRIVYVSCNP-----ATLARDAGVLVEAGYRLKRAG--MLDM-FPHTG 432 (443)
T ss_pred HHHHHHhcCCCeEEEEEeCh-----HHhhccHHHHhhCCcEEEEEE--Eecc-CCCCC
Confidence 22333334513555555333 234444556667899987543 3333 46664
No 37
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=77.11 E-value=14 Score=34.88 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=39.0
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcC
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTG 70 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag 70 (250)
.|.|+|+++.+.+.-+.|.. +..++++|+.++.. .++ ..+|+++..|||.+.....
T Consensus 277 ~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~~-~~fD~Vl~D~Pcsg~G~~~ 337 (444)
T PRK14902 277 KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KFA-EKFDKILVDAPCSGLGVIR 337 (444)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hhc-ccCCEEEEcCCCCCCeeec
Confidence 68899999999888887752 22345667665431 222 2689999999998765443
No 38
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=76.95 E-value=4.2 Score=32.85 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=36.0
Q ss_pred EEEEEeCcHHHHHHHHHhCCC---CCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPR---TNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~---~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
-+.++|+|+.+.+..+.|+.. ..++++|+.++...+ ..+|.+++.+|
T Consensus 37 ~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~---~~~d~vi~n~P 86 (169)
T smart00650 37 RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPK---LQPYKVVGNLP 86 (169)
T ss_pred eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccc---cCCCEEEECCC
Confidence 578999999999999998753 345677887765332 24799999988
No 39
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=76.16 E-value=3.1 Score=36.49 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=37.0
Q ss_pred EEEEEeCcHHHHHHHHHhCCC-----CCccccCccccccccccCCCCcEEEeCCCCchhhhcC
Q psy3543 13 VVTAIDINTSANSVYKHNFPR-----TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTG 70 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~-----~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag 70 (250)
.|.|+|+++...+..+.|... ..+++.|...+.. ... .+|.++.-|||.+.-...
T Consensus 98 ~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~~--~fD~Vl~D~Pcsg~G~~~ 157 (264)
T TIGR00446 98 AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA-AVP--KFDAILLDAPCSGEGVIR 157 (264)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh-hcc--CCCEEEEcCCCCCCcccc
Confidence 689999999999888887532 2234455544321 112 589999999998554443
No 40
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=75.69 E-value=17 Score=34.26 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=39.7
Q ss_pred EEEEEEeCcHHHHHHHHHhCCC----CCccccCccccccccccCCCCcEEEeCCCCchhhhcC
Q psy3543 12 EVVTAIDINTSANSVYKHNFPR----TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTG 70 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~----~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag 70 (250)
..|.++|+++...+..+.|... ..++++|+.+... .+....+|.++..|||.+.....
T Consensus 269 ~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~-~~~~~~fD~Vl~D~Pcs~~G~~~ 330 (427)
T PRK10901 269 AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ-WWDGQPFDRILLDAPCSATGVIR 330 (427)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh-hcccCCCCEEEECCCCCcccccc
Confidence 3689999999999888888642 2345667665422 11222689999999998754443
No 41
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=75.55 E-value=15 Score=32.66 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=58.9
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCC-CC-CCCchh----
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQ-KD-IADARC---- 80 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~-~~-~~d~r~---- 80 (250)
.+.++|+++.|.+.-+.|... ..++++|+.+. ++...+|+++.-||+-+.+..... .. ..+++.
T Consensus 147 ~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~g 222 (284)
T TIGR03533 147 EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALAS 222 (284)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcC
Confidence 578999999999888887421 22455665432 222268999999999765532210 00 011211
Q ss_pred -----hHHHHHHHHc-cccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCCeE
Q psy3543 81 -----TALSYLIETI-PAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRF 127 (250)
Q Consensus 81 -----~l~~~~~~ii-~~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v 127 (250)
..+..+++.+ +.++ | -.+++|-- .....+.+.+.+.||.+
T Consensus 223 g~dGl~~~~~il~~a~~~L~-~gG~l~~e~g------~~~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 223 GEDGLDLVRRILAEAADHLN-ENGVLVVEVG------NSMEALEEAYPDVPFTW 269 (284)
T ss_pred CCcHHHHHHHHHHHHHHhcC-CCCEEEEEEC------cCHHHHHHHHHhCCCce
Confidence 1233444332 2344 6 35556632 12357777888888766
No 42
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=75.22 E-value=4.5 Score=31.89 Aligned_cols=80 Identities=13% Similarity=0.188 Sum_probs=51.4
Q ss_pred CcEEEEEEeCcHHHHHHHHHh-----CCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHH
Q psy3543 10 SLEVVTAIDINTSANSVYKHN-----FPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALS 84 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N-----~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~ 84 (250)
+.+ +.++|+++.+++..+.+ ++...++++|+.++... ++ ..+|+++...++.. ..+.. .++.
T Consensus 28 ~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~-~~~D~I~~~~~l~~---------~~~~~-~~l~ 94 (152)
T PF13847_consen 28 GAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE-EKFDIIISNGVLHH---------FPDPE-KVLK 94 (152)
T ss_dssp TSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS-TTEEEEEEESTGGG---------TSHHH-HHHH
T ss_pred CCE-EEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC-CCeeEEEEcCchhh---------ccCHH-HHHH
Confidence 344 78999999998887774 33445678999986544 54 37999999988721 22222 4566
Q ss_pred HHHHHccccCCCcEEEEccc
Q psy3543 85 YLIETIPAIPSLQCLLLENV 104 (250)
Q Consensus 85 ~~~~ii~~~~~P~~i~~ENV 104 (250)
.+.++++.-- .+++.+..
T Consensus 95 ~~~~~lk~~G--~~i~~~~~ 112 (152)
T PF13847_consen 95 NIIRLLKPGG--ILIISDPN 112 (152)
T ss_dssp HHHHHEEEEE--EEEEEEEE
T ss_pred HHHHHcCCCc--EEEEEECC
Confidence 6666665422 44444444
No 43
>PRK04148 hypothetical protein; Provisional
Probab=74.79 E-value=7.5 Score=30.81 Aligned_cols=55 Identities=24% Similarity=0.195 Sum_probs=40.2
Q ss_pred ChHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 1 AERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 1 ~egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
|+.|.+.| + -|.|+|+++.|.+..+.+. ..++..|+.+-+.+-.. ++|++-..-|
T Consensus 32 A~~L~~~G--~-~ViaIDi~~~aV~~a~~~~--~~~v~dDlf~p~~~~y~--~a~liysirp 86 (134)
T PRK04148 32 AKKLKESG--F-DVIVIDINEKAVEKAKKLG--LNAFVDDLFNPNLEIYK--NAKLIYSIRP 86 (134)
T ss_pred HHHHHHCC--C-EEEEEECCHHHHHHHHHhC--CeEEECcCCCCCHHHHh--cCCEEEEeCC
Confidence 35677766 4 5678999999999887774 33578899877665555 6888877665
No 44
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=74.45 E-value=4 Score=34.45 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=47.9
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
..-|.++|+++.|.+.-+.|.. +..++++|+.+.... . ...+|+++.-|| | +. .+...
T Consensus 76 a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~-~-~~~fDlV~~DPP---y-----~~-------g~~~~ 138 (199)
T PRK10909 76 AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ-P-GTPHNVVFVDPP---F-----RK-------GLLEE 138 (199)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh-c-CCCceEEEECCC---C-----CC-------ChHHH
Confidence 3468899999999998888842 223456676543321 1 125899999999 2 11 23455
Q ss_pred HHHHccc---cCCCcEEEEcccc
Q psy3543 86 LIETIPA---IPSLQCLLLENVK 105 (250)
Q Consensus 86 ~~~ii~~---~~~P~~i~~ENV~ 105 (250)
.+++|.. +..-.++++|--.
T Consensus 139 ~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 139 TINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHHHHHCCCcCCCcEEEEEecC
Confidence 5565654 2413677777444
No 45
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=72.49 E-value=27 Score=29.34 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=44.3
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLI 87 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~ 87 (250)
-+.++|+++...+.-+.|.. +..++.+|+.++. ++...+|+++++...+.+ .+. ..++.++.
T Consensus 72 ~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l~~~---------~~~-~~~l~~~~ 138 (231)
T TIGR02752 72 HVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP---FDDNSFDYVTIGFGLRNV---------PDY-MQVLREMY 138 (231)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC---CCCCCccEEEEecccccC---------CCH-HHHHHHHH
Confidence 57889999998877776643 2234556666543 233368999987553221 222 23555555
Q ss_pred HHccccCCCcEEEEccc
Q psy3543 88 ETIPAIPSLQCLLLENV 104 (250)
Q Consensus 88 ~ii~~~~~P~~i~~ENV 104 (250)
++++.= =.++++|..
T Consensus 139 ~~Lk~g--G~l~~~~~~ 153 (231)
T TIGR02752 139 RVVKPG--GKVVCLETS 153 (231)
T ss_pred HHcCcC--eEEEEEECC
Confidence 555321 256666653
No 46
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=72.23 E-value=4 Score=34.03 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=34.5
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccC-CCCcEEEeCCC
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINA-MSPDVILMSPP 62 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~-~~~Dll~~gpP 62 (250)
|...|.++|+++.|++.-+.|... ..++++|+.+....-... ...|+++.-||
T Consensus 71 ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPP 130 (189)
T TIGR00095 71 GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPP 130 (189)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcC
Confidence 355789999999999988888521 234566764432111111 13799999999
No 47
>PTZ00146 fibrillarin; Provisional
Probab=72.11 E-value=75 Score=28.60 Aligned_cols=123 Identities=14% Similarity=0.067 Sum_probs=68.4
Q ss_pred EEEEEeCcHHHHHHHHHh---CCCCCccccCccccc-cccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHN---FPRTNLRGRNIQSFS-IEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIE 88 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N---~~~~~~~~~dI~~~~-~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ 88 (250)
.|+|+|+++.+.+-+... .++...+..|++.-. ...+.. .+|+++..-. | .|....+..++.+
T Consensus 159 ~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~-~vDvV~~Dva-~-----------pdq~~il~~na~r 225 (293)
T PTZ00146 159 VVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVP-MVDVIFADVA-Q-----------PDQARIVALNAQY 225 (293)
T ss_pred EEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccC-CCCEEEEeCC-C-----------cchHHHHHHHHHH
Confidence 689999998654222221 134445567776421 111222 6899988763 2 2232234445555
Q ss_pred HccccCCCcEEEEccccCCCcc----hHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 89 TIPAIPSLQCLLLENVKGFEGS----RSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 89 ii~~~~~P~~i~~ENV~~~~~~----~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
+|+.= =.+++...-..+... ..|..=++.|++.||.....+ +. -|..|....+|+..+..
T Consensus 226 ~LKpG--G~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v-~L----~Py~~~h~~v~~~~~~~ 289 (293)
T PTZ00146 226 FLKNG--GHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQL-TL----EPFERDHAVVIGVYRPV 289 (293)
T ss_pred hccCC--CEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEE-ec----CCccCCcEEEEEEEcCC
Confidence 65432 244443333333222 223333588999999976543 22 57799999999987654
No 48
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=72.11 E-value=18 Score=34.11 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=39.3
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----CCCccccCcccccccc-ccCCCCcEEEeCCCCchhhhcCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEE-INAMSPDVILMSPPCQPFTRTGL 71 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~-~~~~~~Dll~~gpPCQ~fS~ag~ 71 (250)
.|.|+|+++...+..+.|.. +..+++.|..++.... .....+|.++.-+||.+.....+
T Consensus 279 ~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r 343 (434)
T PRK14901 279 EIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHR 343 (434)
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCccccccc
Confidence 68899999999888887753 2234556766553111 11226899999999988544443
No 49
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=71.28 E-value=6.4 Score=33.01 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=40.3
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCC-CCcEEEeCCCCc
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAM-SPDVILMSPPCQ 64 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~-~~Dll~~gpPCQ 64 (250)
|||-..-|..-+..+|.|..|..+.+.|... ..++..|....-. ..... .+|+++.-||=.
T Consensus 58 GlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~-~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 58 GLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALK-QLGTREPFDLVFLDPPYA 125 (187)
T ss_pred HHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHH-hcCCCCcccEEEeCCCCc
Confidence 5555556677889999999999999999532 2234445442211 11221 499999999943
No 50
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=71.27 E-value=9.1 Score=33.56 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=71.6
Q ss_pred cEEEEEEeCcHHHHHHHHHhC-------CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNF-------PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTAL 83 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~-------~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~ 83 (250)
...|..+|.|++-.+.-..|= +...++.+|+-++- +++++..+|.++.-|| -||.||. +... .++
T Consensus 157 A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V-~~~~D~sfDaIiHDPP--RfS~Age---LYse--efY 228 (287)
T COG2521 157 AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV-KDFDDESFDAIIHDPP--RFSLAGE---LYSE--EFY 228 (287)
T ss_pred CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH-hcCCccccceEeeCCC--ccchhhh---HhHH--HHH
Confidence 446677888887655444441 11245677776664 3566557999999999 5787772 2222 478
Q ss_pred HHHHHHccccCCCcEEEEccccCCC-c-chHHHHHHHHHHhCCCeEEEEE
Q psy3543 84 SYLIETIPAIPSLQCLLLENVKGFE-G-SRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 84 ~~~~~ii~~~~~P~~i~~ENV~~~~-~-~~~~~~i~~~L~~~GY~v~~~i 131 (250)
.++.|+++.= -+.|-.=--||-. . -....-+.+.|++.||.+-.++
T Consensus 229 ~El~RiLkrg--GrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 229 RELYRILKRG--GRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred HHHHHHcCcC--CcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeee
Confidence 8888888742 2555544445522 2 3467788999999999965544
No 51
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=71.14 E-value=12 Score=37.68 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=45.4
Q ss_pred EEEEEeCcHHHHHHHHHhCCCC------CccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPRT------NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~------~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.+.++|+|+.|.+.-+.|.... .+.++|+.++.... ....+|+++.-|| -|.+.+....-..+|..+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPP------Yg~r~~~~~~l~~lY~~l 330 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPP------YGERLGEEPALIALYSQL 330 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCC------CcCccCchHHHHHHHHHH
Confidence 4799999999999999985321 23466776654322 1125899999999 444433222223466555
Q ss_pred HHHccc
Q psy3543 87 IETIPA 92 (250)
Q Consensus 87 ~~ii~~ 92 (250)
.+.++.
T Consensus 331 g~~lk~ 336 (702)
T PRK11783 331 GRRLKQ 336 (702)
T ss_pred HHHHHH
Confidence 555553
No 52
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=71.12 E-value=14 Score=25.67 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=47.1
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCC--ccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchh
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTN--LRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARC 80 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~--~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~ 80 (250)
.|.+. +..-+.++|+++.+.+.-+.+..... +...|+.++ .++...+|+++...=.+-+ +.+.
T Consensus 13 ~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l---~~~~~sfD~v~~~~~~~~~----------~~~~ 77 (95)
T PF08241_consen 13 ALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL---PFPDNSFDVVFSNSVLHHL----------EDPE 77 (95)
T ss_dssp HHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS---SS-TT-EEEEEEESHGGGS----------SHHH
T ss_pred HHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhC---ccccccccccccccceeec----------cCHH
Confidence 34444 35678999999999999998886543 456676666 3333478998876543333 3444
Q ss_pred hHHHHHHHHcc
Q psy3543 81 TALSYLIETIP 91 (250)
Q Consensus 81 ~l~~~~~~ii~ 91 (250)
..+.++.|+++
T Consensus 78 ~~l~e~~rvLk 88 (95)
T PF08241_consen 78 AALREIYRVLK 88 (95)
T ss_dssp HHHHHHHHHEE
T ss_pred HHHHHHHHHcC
Confidence 57777777765
No 53
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=70.47 E-value=45 Score=31.69 Aligned_cols=98 Identities=16% Similarity=0.329 Sum_probs=66.2
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHH
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALS 84 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~ 84 (250)
.+.-|.++|+++.|.+.-+.|-. +..+..+|..++.........+|.++.-|| ++|- | .
T Consensus 314 ~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP-----R~G~-----~------~ 377 (432)
T COG2265 314 RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP-----RAGA-----D------R 377 (432)
T ss_pred cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC-----CCCC-----C------H
Confidence 35678999999999998888742 223445666666554433337899999999 3331 1 3
Q ss_pred HHHHHccccCCCc--EEEEccccCCCcchHHHHHHHHHHhCCCeEEEE
Q psy3543 85 YLIETIPAIPSLQ--CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 85 ~~~~ii~~~~~P~--~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
++++.|.++. |+ +.+-=|+ .++..=+..|.+.||.+...
T Consensus 378 ~~lk~l~~~~-p~~IvYVSCNP------~TlaRDl~~L~~~gy~i~~v 418 (432)
T COG2265 378 EVLKQLAKLK-PKRIVYVSCNP------ATLARDLAILASTGYEIERV 418 (432)
T ss_pred HHHHHHHhcC-CCcEEEEeCCH------HHHHHHHHHHHhCCeEEEEE
Confidence 4777788888 77 3333333 36777788899999987654
No 54
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=69.12 E-value=4.9 Score=34.02 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=29.3
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC-----C-CCccccCccccccccccCCCCcEEEeCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP-----R-TNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~-----~-~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
...|+|+|+||.|.+..+.|.. + ...+++|.+++.. ...+|-++++.|
T Consensus 125 ~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----~~~~drvim~lp 178 (200)
T PF02475_consen 125 AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----EGKFDRVIMNLP 178 (200)
T ss_dssp SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------TT-EEEEEE--T
T ss_pred ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----ccccCEEEECCh
Confidence 5679999999999999988742 1 1135677776654 226789999988
No 55
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=68.70 E-value=14 Score=34.57 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=36.8
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC-------CCCccccCccccccccc-cCCCCcEEEeCCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP-------RTNLRGRNIQSFSIEEI-NAMSPDVILMSPPC 63 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~-------~~~~~~~dI~~~~~~~~-~~~~~Dll~~gpPC 63 (250)
...|.++|+++.|.+.-+.|+. ...++++|+.++..+-. ....+|+++.-||+
T Consensus 243 a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~ 303 (396)
T PRK15128 243 CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPK 303 (396)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCC
Confidence 5578899999999998888752 12345677766532211 12268999999996
No 56
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=68.66 E-value=28 Score=32.57 Aligned_cols=128 Identities=14% Similarity=0.172 Sum_probs=77.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhC------C------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCc
Q psy3543 11 LEVVTAIDINTSANSVYKHNF------P------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADA 78 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~------~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~ 78 (250)
++-+.-+|.||.-.+..++|- . ...++..|.-++-...- ..+|.++.-.|=. .++.
T Consensus 313 ~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~--~~fD~vIVDl~DP----------~tps 380 (508)
T COG4262 313 VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA--DMFDVVIVDLPDP----------STPS 380 (508)
T ss_pred cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc--ccccEEEEeCCCC----------CCcc
Confidence 778889999999988877652 1 11123333332221111 1578888877721 1222
Q ss_pred hhhHHH-HHHHHccccCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 79 RCTALS-YLIETIPAIPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 79 r~~l~~-~~~~ii~~~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
-++++- +|.++++..-.+. .+++.--..+.+.+.|-.+...+++.||.+...++--..|| +.=|++|...+.
T Consensus 381 ~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFG-----eWGf~l~~~~~~ 454 (508)
T COG4262 381 IGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFG-----EWGFILAAPGDA 454 (508)
T ss_pred hhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCccc-----ccceeecccccC
Confidence 234443 5666665432243 34444444555567788899999999999988766544444 677888888776
No 57
>KOG1122|consensus
Probab=68.33 E-value=14 Score=34.85 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=51.2
Q ss_pred ChHHhhcCCCcEEEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCC
Q psy3543 1 AERLSNHAFSLEVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71 (250)
Q Consensus 1 ~egL~~~g~~~~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~ 71 (250)
|.-|++.| +|+|+|.+..-......|.. ++.+.+.|..++...+++. .+|=++.-.||.+--...|
T Consensus 260 AalMkn~G----~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLLDAPCSGtgvi~K 330 (460)
T KOG1122|consen 260 AALMKNTG----VIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLLDAPCSGTGVISK 330 (460)
T ss_pred HHHHcCCc----eEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeeecCCCCCCccccc
Confidence 34577788 89999999999999988853 4455677887776667775 7999999999998554444
No 58
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=68.20 E-value=6.8 Score=34.48 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=69.0
Q ss_pred EEEEEeCcHHHHHHHHHhCC--CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHc
Q psy3543 13 VVTAIDINTSANSVYKHNFP--RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETI 90 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~--~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii 90 (250)
-|.|+|+|+.+.+..+.|+. ...++++|+.++...++. .+.+++.+|=.- .+.++..++...
T Consensus 66 ~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~---~~~vv~NlPY~i-------------ss~ii~~~l~~~ 129 (272)
T PRK00274 66 KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQ---PLKVVANLPYNI-------------TTPLLFHLLEER 129 (272)
T ss_pred cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcC---cceEEEeCCccc-------------hHHHHHHHHhcC
Confidence 57899999999999988873 444678888887654431 488999998211 123444444322
Q ss_pred cccCCCcEEEEcc--ccCCCc---chHHHHHHHHHHhCCCeEEEE-EEccCCCCccccCceEEEEEEeC
Q psy3543 91 PAIPSLQCLLLEN--VKGFEG---SRSRDLITSMLTRAGFRFQEF-LLSPTQFGVPNSRTRYYLIAKRS 153 (250)
Q Consensus 91 ~~~~~P~~i~~EN--V~~~~~---~~~~~~i~~~L~~~GY~v~~~-il~a~~~GvPq~R~R~~lva~~~ 153 (250)
.... .-++++.. ...+.. ++.+ .-+..+.+.=|++... .+.+..| .|+.+.-.-+|-...
T Consensus 130 ~~~~-~~~l~~QkE~A~Rl~a~pg~~~y-~~lSv~~~~~~~~~~~~~v~~~~F-~P~PkV~s~vv~l~~ 195 (272)
T PRK00274 130 DPIR-DMVVMVQKEVAERIVAKPGSKAY-GRLSVLVQYYCDVEKVFDVPPSAF-VPPPKVDSAVVRLVP 195 (272)
T ss_pred CCCC-eeEEEeHHHHHHHHcCCCCCccc-cHHHHHHHHHcceEEEEEeChhhC-CCCCCceEEEEEEEE
Confidence 2222 22333321 111211 1111 1223344444666654 6888888 777777776666654
No 59
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=67.82 E-value=6.4 Score=28.84 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=33.3
Q ss_pred cEEEEEEeCcHHHHHHHHHhC------CCCCccccCccccccccccCCCCcEEEeCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNF------PRTNLRGRNIQSFSIEEINAMSPDVILMSP 61 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~------~~~~~~~~dI~~~~~~~~~~~~~Dll~~gp 61 (250)
.+ +.++|+++...+..+.|. +...++++|+ ........ ++|+++.+.
T Consensus 26 ~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~--~~D~v~~~~ 78 (112)
T PF12847_consen 26 AR-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLE--PFDLVICSG 78 (112)
T ss_dssp SE-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSS--CEEEEEECS
T ss_pred CE-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCC--CCCEEEECC
Confidence 55 789999999999999887 2233567788 33333333 689998876
No 60
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=67.55 E-value=11 Score=34.82 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=41.5
Q ss_pred EEEEEEeCcHHHHHHHHHhCCCC-----CccccCccccccccccCCCCcEEEeCCCCchhhhcCCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFPRT-----NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQK 73 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~~-----~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~ 73 (250)
.+|+|+|+++.-......|.... .+.+.|-+.+.........+|-++.-+||.+.-...+..
T Consensus 183 ~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~P 249 (355)
T COG0144 183 AIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDP 249 (355)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCc
Confidence 36799999999999999986432 233344333322111111389999999999988777653
No 61
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=66.61 E-value=12 Score=31.41 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=34.5
Q ss_pred EEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeC
Q psy3543 12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMS 60 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~g 60 (250)
..+.++|+++.+.+..+.+++...+.++|+.+ .++...+|+++.+
T Consensus 68 ~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~----~~~~~sfD~V~~~ 112 (204)
T TIGR03587 68 KHIYGVEINEYAVEKAKAYLPNINIIQGSLFD----PFKDNFFDLVLTK 112 (204)
T ss_pred CeEEEEECCHHHHHHHHhhCCCCcEEEeeccC----CCCCCCEEEEEEC
Confidence 46899999999999999998877667778765 2233368998853
No 62
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=66.49 E-value=64 Score=31.21 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=65.8
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCC-CCC--CCCchhh--
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL-QKD--IADARCT-- 81 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~-~~~--~~d~r~~-- 81 (250)
.+.++|+++.|.+.-+.|... ..++++|+.+ .++...+|+++..||=-+.+.... ... ...+...
T Consensus 164 ~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~----~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~ 239 (506)
T PRK01544 164 NVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE----NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALF 239 (506)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh----hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhc
Confidence 578999999999988888421 2234555432 122236899999999665443210 000 0112211
Q ss_pred -------HHHHHHHHcc-ccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEE
Q psy3543 82 -------ALSYLIETIP-AIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLI 149 (250)
Q Consensus 82 -------l~~~~~~ii~-~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lv 149 (250)
.+..+++-+. .++ | -.+++| -|. ...+.+.+.|.+.||...... .|+ +.+.|++++
T Consensus 240 gg~dGl~~~~~il~~a~~~L~-~gG~l~lE--ig~---~q~~~v~~~~~~~g~~~~~~~---~D~---~g~~R~v~~ 304 (506)
T PRK01544 240 AEEDGLQAYFIIAENAKQFLK-PNGKIILE--IGF---KQEEAVTQIFLDHGYNIESVY---KDL---QGHSRVILI 304 (506)
T ss_pred CCccHHHHHHHHHHHHHHhcc-CCCEEEEE--ECC---chHHHHHHHHHhcCCCceEEE---ecC---CCCceEEEe
Confidence 2233333222 334 5 366677 232 346677788888898754333 233 345666544
No 63
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=65.85 E-value=7.9 Score=31.40 Aligned_cols=46 Identities=30% Similarity=0.403 Sum_probs=29.5
Q ss_pred EEEEEeCcHHHHHHHHHhCCCC-----CccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPRT-----NLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~-----~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.|.++|+++.|.+.-+.|.... .++..|+.+ .++...+|+++..||
T Consensus 57 ~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~----~~~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 57 KVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE----ALPDGKFDLIVSNPP 107 (170)
T ss_dssp EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT----TCCTTCEEEEEE---
T ss_pred EEEEEcCCHHHHHHHHHHHHhcCccccccccccccc----cccccceeEEEEccc
Confidence 4899999999999998886432 233445432 223337999999999
No 64
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=65.84 E-value=14 Score=34.46 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=52.4
Q ss_pred CCcEEEEEEeCcHHHHHHHHHhCCCCC------ccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhH
Q psy3543 9 FSLEVVTAIDINTSANSVYKHNFPRTN------LRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTA 82 (250)
Q Consensus 9 ~~~~~v~a~did~~a~~~y~~N~~~~~------~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l 82 (250)
.....++++|+|+...+.-+.|--... +.+.|++.+...- . .+|+++.-|| -|-+-+.+..-..|
T Consensus 252 ~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~--~~gvvI~NPP------YGeRlg~~~~v~~L 322 (381)
T COG0116 252 KELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-E--EYGVVISNPP------YGERLGSEALVAKL 322 (381)
T ss_pred CccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-C--cCCEEEeCCC------cchhcCChhhHHHH
Confidence 445577899999999999999964332 3456666665432 2 6799999999 56554433223458
Q ss_pred HHHHHHHccccC
Q psy3543 83 LSYLIETIPAIP 94 (250)
Q Consensus 83 ~~~~~~ii~~~~ 94 (250)
+.++.+.+++.-
T Consensus 323 Y~~fg~~lk~~~ 334 (381)
T COG0116 323 YREFGRTLKRLL 334 (381)
T ss_pred HHHHHHHHHHHh
Confidence 888888885443
No 65
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=64.90 E-value=13 Score=33.94 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeE
Q psy3543 53 SPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRF 127 (250)
Q Consensus 53 ~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v 127 (250)
++||++--|| =+||.+++.+|-+.. -+++++=|.-.+.-.+.|..|.+.-.=+||..
T Consensus 135 eADIVVTNPP-----------------FSLFrEyv~~Li~~~-KkFlIIGN~NaiTYkeiFplik~nk~WlG~~~ 191 (336)
T PF13651_consen 135 EADIVVTNPP-----------------FSLFREYVAQLIEYD-KKFLIIGNINAITYKEIFPLIKENKIWLGYTF 191 (336)
T ss_pred cCCEEEeCCC-----------------cHHHHHHHHHHHHhC-CCEEEEeccccccHHHHHHHHhcCcEEecccc
Confidence 7899999998 258999999888887 89999999977654555665555444478876
No 66
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=64.23 E-value=8.3 Score=33.80 Aligned_cols=130 Identities=15% Similarity=0.183 Sum_probs=69.9
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCch-------
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADAR------- 79 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r------- 79 (250)
-+.++|+++.+.+.-..|... ..+++.||.++....-.. .+|++++-|| |=..|..+..+..+
T Consensus 70 ~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~-~fD~Ii~NPP---yf~~~~~~~~~~~~~~Ar~e~ 145 (248)
T COG4123 70 KIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA-SFDLIICNPP---YFKQGSRLNENPLRAIARHEI 145 (248)
T ss_pred cEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc-ccCEEEeCCC---CCCCccccCcChhhhhhhhhh
Confidence 468899999998887777532 236788888776543332 5899999999 33333332211111
Q ss_pred hhHHHHHHHHccccCCCc--EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCc-eEEEEEEeCCC
Q psy3543 80 CTALSYLIETIPAIPSLQ--CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRT-RYYLIAKRSPA 155 (250)
Q Consensus 80 ~~l~~~~~~ii~~~~~P~--~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~-R~~lva~~~~~ 155 (250)
...+..+++....+-+|. +.++ ..-..+..|++.|.+.+........-. .-+-... |+.+-|.+.+.
T Consensus 146 ~~~le~~i~~a~~~lk~~G~l~~V------~r~erl~ei~~~l~~~~~~~k~i~~V~---p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 146 TLDLEDLIRAAAKLLKPGGRLAFV------HRPERLAEIIELLKSYNLEPKRIQFVY---PKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred cCCHHHHHHHHHHHccCCCEEEEE------ecHHHHHHHHHHHHhcCCCceEEEEec---CCCCCcceEEEEEEecCCC
Confidence 122344444443321132 1111 012456678888887777665543222 2223333 45555555544
No 67
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=63.19 E-value=8.5 Score=36.37 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=39.1
Q ss_pred EEEEEeCcHHHHHHHHHhCCC-----CCccccCccccccccccCCCCcEEEeCCCCchhhhcCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPR-----TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~-----~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~ 71 (250)
.|.|+|+++...+..+.|... ..+...|..++.. .. ...+|.++.-+||.++-...+
T Consensus 264 ~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-~~-~~~fD~Vl~DaPCsg~G~~~~ 325 (431)
T PRK14903 264 KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-YV-QDTFDRILVDAPCTSLGTARN 325 (431)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-hh-hccCCEEEECCCCCCCccccC
Confidence 689999999999988888542 2234556554421 11 226899999999987765443
No 68
>PRK00811 spermidine synthase; Provisional
Probab=62.16 E-value=1.1e+02 Score=27.09 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=71.5
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCC----------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPR----------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARC 80 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~----------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~ 80 (250)
.+-|.++|+|+...+..+.+++. ..++.+|..+.... ....+|+++...+ .+++.. .
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDvIi~D~~-dp~~~~----------~ 166 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDVIIVDST-DPVGPA----------E 166 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccEEEECCC-CCCCch----------h
Confidence 56789999999998888887652 22455666554432 2237899998643 222111 1
Q ss_pred hHH-HHHHHHc-cccCCCcEEEEccccCC-CcchHHHHHHHHHHhCCCeEEEEEEccCCCCcccc--CceEEEEEEeCC
Q psy3543 81 TAL-SYLIETI-PAIPSLQCLLLENVKGF-EGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNS--RTRYYLIAKRSP 154 (250)
Q Consensus 81 ~l~-~~~~~ii-~~~~~P~~i~~ENV~~~-~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~--R~R~~lva~~~~ 154 (250)
.|+ .++++.+ +.++ |.-+++=|+... .....+..+.+.|++..-.+...... +|.- -...|++|++..
T Consensus 167 ~l~t~ef~~~~~~~L~-~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~-----vp~~~~~~w~f~~as~~~ 239 (283)
T PRK00811 167 GLFTKEFYENCKRALK-EDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAA-----IPTYPSGLWSFTFASKND 239 (283)
T ss_pred hhhHHHHHHHHHHhcC-CCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeE-----CCcccCchheeEEeecCc
Confidence 222 2344333 3445 776776666543 23456778888888875444433221 3332 345678887643
No 69
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=61.09 E-value=5.3 Score=35.92 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=54.5
Q ss_pred CCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHH
Q psy3543 8 AFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLI 87 (250)
Q Consensus 8 g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~ 87 (250)
.+|.+-|.|+|+|+.|.++-+.|.....+ ...+.-....+..+..+|++++--- ...+..++
T Consensus 181 klGA~~v~a~DiDp~Av~~a~~N~~~N~~-~~~~~v~~~~~~~~~~~dlvvANI~-----------------~~vL~~l~ 242 (295)
T PF06325_consen 181 KLGAKKVVAIDIDPLAVEAARENAELNGV-EDRIEVSLSEDLVEGKFDLVVANIL-----------------ADVLLELA 242 (295)
T ss_dssp HTTBSEEEEEESSCHHHHHHHHHHHHTT--TTCEEESCTSCTCCS-EEEEEEES------------------HHHHHHHH
T ss_pred HcCCCeEEEecCCHHHHHHHHHHHHHcCC-CeeEEEEEecccccccCCEEEECCC-----------------HHHHHHHH
Confidence 34577899999999999998888522111 1122111222333336777774211 12222333
Q ss_pred H-HccccCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE
Q psy3543 88 E-TIPAIPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 88 ~-ii~~~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
. +.+.++ |. ++++ .|++.. ..+.+.+.+++ |+.+....
T Consensus 243 ~~~~~~l~-~~G~lIl---SGIl~~-~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 243 PDIASLLK-PGGYLIL---SGILEE-QEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp HHCHHHEE-EEEEEEE---EEEEGG-GHHHHHHHHHT-TEEEEEEE
T ss_pred HHHHHhhC-CCCEEEE---ccccHH-HHHHHHHHHHC-CCEEEEEE
Confidence 2 223344 54 3443 777764 45677888877 99886554
No 70
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=60.66 E-value=1.2e+02 Score=26.58 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=68.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCCC---------ccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRTN---------LRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~~---------~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
..-+.++|+|+...+..+.+++... ++..|..+.-.. .. ..+|+++..++- +. + +...
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~-~~-~~yDvIi~D~~~-~~---~-------~~~~ 162 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD-TE-NTFDVIIVDSTD-PV---G-------PAET 162 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh-CC-CCccEEEEeCCC-CC---C-------cccc
Confidence 5678899999999888888765321 122232222111 12 278999987651 11 1 1111
Q ss_pred HH-HHHHHHc-cccCCCcEEEEccccC-CCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEe
Q psy3543 82 AL-SYLIETI-PAIPSLQCLLLENVKG-FEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKR 152 (250)
Q Consensus 82 l~-~~~~~ii-~~~~~P~~i~~ENV~~-~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~ 152 (250)
|+ .++++.+ +.++ |.-+++=|... +.....+..+.+.|.+..-.+......-..|+. -...|++|++
T Consensus 163 l~~~ef~~~~~~~L~-pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~---g~~~~~~as~ 232 (270)
T TIGR00417 163 LFTKEFYELLKKALN-EDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPS---GLWTFTIGSK 232 (270)
T ss_pred hhHHHHHHHHHHHhC-CCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCcccc---chhEEEEEEC
Confidence 22 3344333 3345 76666555443 344567778888888775455444433333422 2348889987
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=59.84 E-value=59 Score=26.82 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=55.7
Q ss_pred EEEEEeCcHHHHHHHHHh-----CCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCC-CCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHN-----FPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQK-DIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N-----~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~-~~~d~r~~l~~~~ 86 (250)
.+.++|+++...+.-..+ .++..++++|+.++....++...+|.++..+|- ||......+ ... ...++..+
T Consensus 42 ~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pd-pw~k~~h~~~r~~--~~~~l~~~ 118 (194)
T TIGR00091 42 NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPD-PWPKKRHNKRRIT--QPHFLKEY 118 (194)
T ss_pred CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCC-cCCCCCccccccC--CHHHHHHH
Confidence 578999999876554433 233446678887765433443368999998873 332211111 011 12344455
Q ss_pred HHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCC-CeE
Q psy3543 87 IETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAG-FRF 127 (250)
Q Consensus 87 ~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~G-Y~v 127 (250)
.++++.- =.+++.-+.. ..+..+++.|...+ |..
T Consensus 119 ~r~Lkpg--G~l~~~td~~-----~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 119 ANVLKKG--GVIHFKTDNE-----PLFEDMLKVLSENDLFEN 153 (194)
T ss_pred HHHhCCC--CEEEEEeCCH-----HHHHHHHHHHHhCCCeEe
Confidence 5555421 1333322222 24667778887776 443
No 72
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=58.85 E-value=9.3 Score=36.66 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=38.9
Q ss_pred EEEEEeCcHHHHHHHHHhCCCC-----CccccCccccccccccCCCCcEEEeCCCCchhhhcCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPRT-----NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~-----~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~ 71 (250)
.++|+|+++.-......|.... .+.+.|.+.+.. .++. .+|.++.-+||.+.-...+
T Consensus 140 ~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~-~~~~-~fD~ILvDaPCSG~G~~rk 201 (470)
T PRK11933 140 AIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA-ALPE-TFDAILLDAPCSGEGTVRK 201 (470)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh-hchh-hcCeEEEcCCCCCCccccc
Confidence 6889999999999999886432 223344443321 2222 6899999999998765554
No 73
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=58.81 E-value=59 Score=29.89 Aligned_cols=105 Identities=14% Similarity=0.203 Sum_probs=61.6
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC-----CCCccccCcccccccccc--------------CCCCcEEEeCCCCchhhhcCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEIN--------------AMSPDVILMSPPCQPFTRTGL 71 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~--------------~~~~Dll~~gpPCQ~fS~ag~ 71 (250)
+.-|.++|+++.|.+.-+.|.. +..++.+|+.++... +. ...+|+++.-|| ++|
T Consensus 228 ~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~~~~~~~~~~~D~v~lDPP-----R~G- 300 (362)
T PRK05031 228 FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA-MNGVREFNRLKGIDLKSYNFSTIFVDPP-----RAG- 300 (362)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-HhhcccccccccccccCCCCCEEEECCC-----CCC-
Confidence 3578999999999998888742 233567777664321 11 114799999999 223
Q ss_pred CCCCCCchhhHHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccC
Q psy3543 72 QKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSR 143 (250)
Q Consensus 72 ~~~~~d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R 143 (250)
+...+++.|.. . .+++.++==| .++..=+..|.+ ||.+.. +.+.|. -||+.
T Consensus 301 ----------~~~~~l~~l~~-~-~~ivyvSC~p-----~tlarDl~~L~~-gY~l~~--v~~~Dm-FPqT~ 351 (362)
T PRK05031 301 ----------LDDETLKLVQA-Y-ERILYISCNP-----ETLCENLETLSQ-THKVER--FALFDQ-FPYTH 351 (362)
T ss_pred ----------CcHHHHHHHHc-c-CCEEEEEeCH-----HHHHHHHHHHcC-CcEEEE--EEEccc-CCCCC
Confidence 22334444443 2 4666666554 233333344544 998875 333444 46664
No 74
>KOG2730|consensus
Probab=58.65 E-value=10 Score=32.92 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=48.3
Q ss_pred cEEEEEEeCcHHHHHHHHHhC-----CC-CCccccCcccccc-ccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNF-----PR-TNLRGRNIQSFSI-EEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTAL 83 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~-----~~-~~~~~~dI~~~~~-~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~ 83 (250)
+-.|.++||||.-...-++|- |+ ..++++|+-++-. ..+.+..+|++.+|||--+-|-++. ...|-+..++
T Consensus 116 ~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~--~~~DL~~~~~ 193 (263)
T KOG2730|consen 116 GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGPSYLRA--DVYDLETHLK 193 (263)
T ss_pred CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCcchhhh--hhhhhhhhcc
Confidence 446889999999999888884 22 2257888766532 1233324788888888766665553 2344443344
Q ss_pred HHHHHHcc
Q psy3543 84 SYLIETIP 91 (250)
Q Consensus 84 ~~~~~ii~ 91 (250)
..+.++.+
T Consensus 194 p~~~~~fk 201 (263)
T KOG2730|consen 194 PMGTKIFK 201 (263)
T ss_pred hhHHHHHH
Confidence 33434443
No 75
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=58.36 E-value=10 Score=33.88 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=53.7
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCC--C-----CCccccCccccccccc-cCCCCcEEEeCCCCchhhhcCCCCCCCCchh-
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFP--R-----TNLRGRNIQSFSIEEI-NAMSPDVILMSPPCQPFTRTGLQKDIADARC- 80 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~--~-----~~~~~~dI~~~~~~~~-~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~- 80 (250)
|..-|..+|.+..|.+.-+.|+. + ..++..|+-+.-.. + ....+|+++.-|| .|++ ++ ..-.+.
T Consensus 145 GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~-~~~~~~fD~IIlDPP--sF~k---~~-~~~~~~y 217 (286)
T PF10672_consen 145 GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR-LKKGGRFDLIILDPP--SFAK---SK-FDLERDY 217 (286)
T ss_dssp TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH-HHHTT-EEEEEE--S--SEES---ST-CEHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH-HhcCCCCCEEEECCC--CCCC---CH-HHHHHHH
Confidence 46678899999999999888852 1 12345666554322 2 1237999999999 4442 11 111221
Q ss_pred -hHHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHh--CCCeEEEEEEccCCC
Q psy3543 81 -TALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTR--AGFRFQEFLLSPTQF 137 (250)
Q Consensus 81 -~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~--~GY~v~~~il~a~~~ 137 (250)
.|+...+++++.- -..++.=|-+.+-. +. +++.+.+ ..++..+..-++.+|
T Consensus 218 ~~L~~~a~~ll~~g--G~l~~~scs~~i~~-~~---l~~~~~~~a~~~~~~~~~~~p~df 271 (286)
T PF10672_consen 218 KKLLRRAMKLLKPG--GLLLTCSCSHHISP-DF---LLEAVAEAAREVEFIERLGQPPDF 271 (286)
T ss_dssp HHHHHHHHHTEEEE--EEEEEEE--TTS-H-HH---HHHHHHHHHHHCEEEEEEE-----
T ss_pred HHHHHHHHHhcCCC--CEEEEEcCCcccCH-HH---HHHHHHHhCccceEeeeecccccc
Confidence 2333343443321 24555566555432 22 3333332 346677777777777
No 76
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=58.35 E-value=22 Score=25.91 Aligned_cols=45 Identities=13% Similarity=0.236 Sum_probs=33.8
Q ss_pred EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCC-CCccccCceEEEEEE
Q psy3543 98 CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQ-FGVPNSRTRYYLIAK 151 (250)
Q Consensus 98 ~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~-~GvPq~R~R~~lva~ 151 (250)
-+++||.+| .+..+...|.+.||++......... -|+ .|+-++..
T Consensus 6 svlVeN~~G-----VL~Rit~lFsRRg~NI~SLtvg~Te~~~i----SRmtivv~ 51 (84)
T PRK13562 6 KLQVADQVS-----TLNRITSAFVRLQYNIDTLHVTHSEQPGI----SNMEIQVD 51 (84)
T ss_pred EEEEECCCC-----HHHHHHHHHhccCcCeeeEEecccCCCCc----eEEEEEEe
Confidence 368999999 4678899999999999987666553 233 47777764
No 77
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=57.67 E-value=1.1e+02 Score=25.25 Aligned_cols=96 Identities=18% Similarity=0.117 Sum_probs=54.0
Q ss_pred EEEEEeCcHHHHHHHHHhC---C---CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF---P---RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~---~---~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.|.++|+++.+.+.-+.|. + +..++.+|..+..+ .+. ..+|.++.+.. ..+. ..++...
T Consensus 67 ~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~-~~~-~~~D~V~~~~~------------~~~~-~~~l~~~ 131 (198)
T PRK00377 67 KVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILF-TIN-EKFDRIFIGGG------------SEKL-KEIISAS 131 (198)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHh-hcC-CCCCEEEECCC------------cccH-HHHHHHH
Confidence 6899999999988766653 1 12234455544321 121 26899887531 1111 1234444
Q ss_pred HHHccccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE
Q psy3543 87 IETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 87 ~~ii~~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
.++ ++ | -.++++.+ . -.....+...|+++||.+....
T Consensus 132 ~~~---Lk-pgG~lv~~~~-~---~~~~~~~~~~l~~~g~~~~~~~ 169 (198)
T PRK00377 132 WEI---IK-KGGRIVIDAI-L---LETVNNALSALENIGFNLEITE 169 (198)
T ss_pred HHH---cC-CCcEEEEEee-c---HHHHHHHHHHHHHcCCCeEEEE
Confidence 444 34 5 33444433 2 2457888899999998765443
No 78
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=56.79 E-value=20 Score=31.00 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=19.3
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHHHh
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYKHN 30 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~~N 30 (250)
-|.+.| ++ |.++|+++.|++.+.+.
T Consensus 60 ~LA~~G--~~-V~GvDlS~~Ai~~~~~e 84 (226)
T PRK13256 60 FFLSKG--VK-VIGIELSEKAVLSFFSQ 84 (226)
T ss_pred HHHhCC--Cc-EEEEecCHHHHHHHHHH
Confidence 455555 66 78899999999998663
No 79
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=55.20 E-value=15 Score=32.60 Aligned_cols=105 Identities=21% Similarity=0.306 Sum_probs=60.2
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCcccccc---ccccCCCCcEEEeCCCCchhhhcCCCCC--CCCchh-------
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSI---EEINAMSPDVILMSPPCQPFTRTGLQKD--IADARC------- 80 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~---~~~~~~~~Dll~~gpPCQ~fS~ag~~~~--~~d~r~------- 80 (250)
.|.|+|+++.|.++-+.|-....+ .++..+.. +.+.. .+|+++.-||==+.+....... ..++..
T Consensus 136 ~V~a~Dis~~Al~~A~~Na~~~~l--~~~~~~~~dlf~~~~~-~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~d 212 (280)
T COG2890 136 EVIAVDISPDALALARENAERNGL--VRVLVVQSDLFEPLRG-KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGD 212 (280)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCC--ccEEEEeeecccccCC-ceeEEEeCCCCCCCcccccChhhhccCHHHHHccCcc
Confidence 688999999999999988643321 12222222 22333 7999999999888772111110 112222
Q ss_pred --hHHHHHHHHccccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCC
Q psy3543 81 --TALSYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGF 125 (250)
Q Consensus 81 --~l~~~~~~ii~~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY 125 (250)
..+..++.-+..+.+| .++++|== ....+.+.+.+.+.|+
T Consensus 213 Gl~~~~~i~~~a~~~l~~~g~l~le~g-----~~q~~~v~~~~~~~~~ 255 (280)
T COG2890 213 GLEVYRRILGEAPDILKPGGVLILEIG-----LTQGEAVKALFEDTGF 255 (280)
T ss_pred HHHHHHHHHHhhHHHcCCCcEEEEEEC-----CCcHHHHHHHHHhcCC
Confidence 2334444433332225 45555532 1356778888999996
No 80
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=55.12 E-value=27 Score=24.79 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=31.9
Q ss_pred EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEE
Q psy3543 98 CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAK 151 (250)
Q Consensus 98 ~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~ 151 (250)
.++.||-|| .+..+...+.+.||++......+.. - ..=.|+.++..
T Consensus 6 si~v~n~pG-----VL~Ri~~lf~rRgfNI~Sl~vg~te--~-~~~sriti~~~ 51 (76)
T PRK06737 6 SLVIHNDPS-----VLLRISGIFARRGYYISSLNLNERD--T-SGVSEMKLTAV 51 (76)
T ss_pred EEEEecCCC-----HHHHHHHHHhccCcceEEEEecccC--C-CCeeEEEEEEE
Confidence 467899998 5778999999999999976655433 1 12235555554
No 81
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=53.49 E-value=24 Score=30.11 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=17.3
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHH
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYK 28 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~ 28 (250)
.|.+.| ++ |.|+|+++.|++...
T Consensus 54 ~LA~~G--~~-V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 54 WLAEQG--HE-VLGVELSELAVEQFF 76 (218)
T ss_pred HHHhCC--Ce-EEEEccCHHHHHHHH
Confidence 355555 65 688999999999764
No 82
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=53.25 E-value=19 Score=26.08 Aligned_cols=45 Identities=16% Similarity=0.308 Sum_probs=33.2
Q ss_pred EEEEEEeCcHHHHHHHHHhC----CCCCccccCccccccccccCCCCcEEEe
Q psy3543 12 EVVTAIDINTSANSVYKHNF----PRTNLRGRNIQSFSIEEINAMSPDVILM 59 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~----~~~~~~~~dI~~~~~~~~~~~~~Dll~~ 59 (250)
.-+.++|+++.+.+..+.++ +...+++.|+.++.. ....+|+++.
T Consensus 25 ~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~---~~~~~D~v~~ 73 (101)
T PF13649_consen 25 SRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF---SDGKFDLVVC 73 (101)
T ss_dssp SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH---HSSSEEEEEE
T ss_pred ceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc---cCCCeeEEEE
Confidence 46789999999998888887 455567889888643 2226899988
No 83
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=52.98 E-value=13 Score=34.48 Aligned_cols=51 Identities=22% Similarity=0.154 Sum_probs=34.8
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
|.+.|+++|+|+.|.+.-+.|.. +..+++.|...+.... ...+|++..-|+
T Consensus 68 ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~--~~~fDvIdlDPf 123 (374)
T TIGR00308 68 GVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR--NRKFHVIDIDPF 123 (374)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh--CCCCCEEEeCCC
Confidence 46789999999999999988862 1234556655553321 125788888776
No 84
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=52.90 E-value=35 Score=32.04 Aligned_cols=59 Identities=20% Similarity=0.172 Sum_probs=38.4
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCC----c--cccCccccccccccCCCCcEEEeCCCCchhhhcCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTN----L--RGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQ 72 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~----~--~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~ 72 (250)
.|.|+|+++...+.-+.|..... + ..+|..+.... .....+|.++..+||.++....+.
T Consensus 264 ~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~~~~~fD~VllDaPcSg~G~~~~~ 328 (426)
T TIGR00563 264 QVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-AENEQFDRILLDAPCSATGVIRRH 328 (426)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc-ccccccCEEEEcCCCCCCcccccC
Confidence 58999999999998888864221 1 22333322110 112269999999999998766643
No 85
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=52.90 E-value=56 Score=30.93 Aligned_cols=128 Identities=10% Similarity=-0.024 Sum_probs=75.1
Q ss_pred EEEEEEeCcHHHHHHHHHhC---CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIE 88 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~---~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ 88 (250)
.-|.++|+++.+.+.-.... +...+++.|+.+... .++...+|+++...++.-++ ++....++.++.+
T Consensus 60 ~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~-~~~~~~fD~I~~~~~l~~l~--------~~~~~~~l~~~~r 130 (475)
T PLN02336 60 GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL-NISDGSVDLIFSNWLLMYLS--------DKEVENLAERMVK 130 (475)
T ss_pred CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc-CCCCCCEEEEehhhhHHhCC--------HHHHHHHHHHHHH
Confidence 35789999999887543322 233345667653321 23333689999887744332 1223456667777
Q ss_pred HccccCCCcEEEEccccCCC-------c---chHHHHHHHHHHhCCCeEE-----------EEEEccCCCCccccCceEE
Q psy3543 89 TIPAIPSLQCLLLENVKGFE-------G---SRSRDLITSMLTRAGFRFQ-----------EFLLSPTQFGVPNSRTRYY 147 (250)
Q Consensus 89 ii~~~~~P~~i~~ENV~~~~-------~---~~~~~~i~~~L~~~GY~v~-----------~~il~a~~~GvPq~R~R~~ 147 (250)
+++.- =.+++.||+..-. + ......+.+.+.+.|+... +.++ ..|.+|.+-.|++
T Consensus 131 ~Lk~g--G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 206 (475)
T PLN02336 131 WLKVG--GYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSFELSLVGCKCI--GAYVKNKKNQNQI 206 (475)
T ss_pred hcCCC--eEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEEEEEEEEeech--hhhhhccCCcceE
Confidence 76532 2566778774321 1 1235566777777776543 2222 3488999999988
Q ss_pred EEEEe
Q psy3543 148 LIAKR 152 (250)
Q Consensus 148 lva~~ 152 (250)
+-..+
T Consensus 207 ~~~~~ 211 (475)
T PLN02336 207 CWLWQ 211 (475)
T ss_pred EEEEE
Confidence 76553
No 86
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=52.43 E-value=27 Score=30.80 Aligned_cols=48 Identities=23% Similarity=0.381 Sum_probs=38.4
Q ss_pred EEEEEeCcHHHHHHHHHhCC---CCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP---RTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~---~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.|.|+|+|+.-+...+..+. +..++++|+-+++...+. ..+.+++-.|
T Consensus 54 ~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~--~~~~vVaNlP 104 (259)
T COG0030 54 RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA--QPYKVVANLP 104 (259)
T ss_pred eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc--CCCEEEEcCC
Confidence 58999999999999998863 345788999988766553 4688888888
No 87
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=52.26 E-value=26 Score=31.60 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=35.8
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCchhh
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFT 67 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS 67 (250)
.+.++|+|+.+...-+.|.. +..+..+|+.++... ...+|+++.-|||...+
T Consensus 206 ~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~---~~~~D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 206 KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS---SESVDAIATDPPYGRST 262 (329)
T ss_pred eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc---cCCCCEEEECCCCcCcc
Confidence 57899999998877676642 223456777765432 23689999999985433
No 88
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=50.84 E-value=11 Score=35.92 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=30.8
Q ss_pred cEEEEEEeCcHHHHHHHHH----h-C-CCCCccccCccccccccccCCCCcEEEe
Q psy3543 11 LEVVTAIDINTSANSVYKH----N-F-PRTNLRGRNIQSFSIEEINAMSPDVILM 59 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~----N-~-~~~~~~~~dI~~~~~~~~~~~~~Dll~~ 59 (250)
-.-|+|+|-++.|..+.+. | + ....++++|++++...+ .+||++-
T Consensus 214 a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe----kvDIIVS 264 (448)
T PF05185_consen 214 AVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE----KVDIIVS 264 (448)
T ss_dssp ESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-----EEEEEE
T ss_pred CeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC----ceeEEEE
Confidence 4578999999999887632 2 2 22347899999996544 6899763
No 89
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=50.56 E-value=24 Score=30.69 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=34.1
Q ss_pred EEEEEeCcHHHHHHHHHhCCC---CCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPR---TNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~---~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
-+.++|+|+...+..+.++.. ..++++|+.++. ++ ++|.+++.+|
T Consensus 53 ~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~---~~--~~d~Vv~NlP 100 (258)
T PRK14896 53 KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD---LP--EFNKVVSNLP 100 (258)
T ss_pred EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC---ch--hceEEEEcCC
Confidence 578999999999988887642 335677877664 33 4689999999
No 90
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=50.09 E-value=20 Score=32.21 Aligned_cols=51 Identities=25% Similarity=0.318 Sum_probs=35.8
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCCchhh
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFT 67 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS 67 (250)
.|.++|+++.|.+.-+.|... ..++++|+.+. ++...+|+++..||+-+..
T Consensus 159 ~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l~~~~fDlIvsNPPyi~~~ 215 (307)
T PRK11805 159 EVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----LPGRRYDLIVSNPPYVDAE 215 (307)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----CCCCCccEEEECCCCCCcc
Confidence 578999999999988888531 23455665432 2222689999999987653
No 91
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=49.26 E-value=59 Score=26.98 Aligned_cols=82 Identities=16% Similarity=0.228 Sum_probs=54.6
Q ss_pred EEEEeCcHHHHHHHHHhCCC--CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCC-CCCCchhhHHHHHHHHc
Q psy3543 14 VTAIDINTSANSVYKHNFPR--TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQK-DIADARCTALSYLIETI 90 (250)
Q Consensus 14 v~a~did~~a~~~y~~N~~~--~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~-~~~d~r~~l~~~~~~ii 90 (250)
|..+|-|.-+..+|..-+-+ .+.... .|.+...|+.+.-+|=.+|+--|.+. +..-.|......+.+++
T Consensus 81 v~fiDTD~itT~~~~~~y~gr~~P~~~~--------~i~~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L 152 (187)
T COG3172 81 VAFIDTDFLTTQAFCKKYEGREHPFLQA--------LIAEYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQML 152 (187)
T ss_pred eEEEeccHHHHHHHHHHHcccCCchHHH--------HHhhcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHH
Confidence 44566666666666655422 222222 23344789999999999999888653 34446666666778899
Q ss_pred cccCCCcEEEEccc
Q psy3543 91 PAIPSLQCLLLENV 104 (250)
Q Consensus 91 ~~~~~P~~i~~ENV 104 (250)
++.. -+++++|--
T Consensus 153 ~~~~-~~~v~i~~~ 165 (187)
T COG3172 153 EENN-IPFVVIEGE 165 (187)
T ss_pred HHhC-CcEEEEcCC
Confidence 9887 788888764
No 92
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=48.82 E-value=34 Score=29.03 Aligned_cols=23 Identities=13% Similarity=0.227 Sum_probs=17.2
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHH
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYK 28 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~ 28 (250)
.|.+.| ++ |.|+|+++.|++...
T Consensus 51 ~LA~~G--~~-V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 51 WLAEQG--HR-VLGVELSEIAVEQFF 73 (213)
T ss_pred HHHhCC--Ce-EEEEeCCHHHHHHHH
Confidence 455555 65 688999999999753
No 93
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=47.81 E-value=28 Score=32.44 Aligned_cols=49 Identities=27% Similarity=0.308 Sum_probs=34.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
..-|+++|+|+.|.+.-+.|.. +..++++|+.++... ...+|+++.-||
T Consensus 81 ~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lDP~ 134 (382)
T PRK04338 81 VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDIDPF 134 (382)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEECCC
Confidence 4568999999999999988752 222456666554322 226899999987
No 94
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=47.69 E-value=40 Score=28.93 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=43.7
Q ss_pred EEEEEeCcHHHHHHHHHhCCCC------CccccCcccccccccc---CCCCcEEEeCCCCchhhhcCCCCCCCCchhhHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPRT------NLRGRNIQSFSIEEIN---AMSPDVILMSPPCQPFTRTGLQKDIADARCTAL 83 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~------~~~~~dI~~~~~~~~~---~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~ 83 (250)
.+.++|+|+.+.+.-+.|+... .++.+|..++-++-.+ ...+|+++...+ + +.-..++
T Consensus 95 ~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~----------k---~~y~~~~ 161 (234)
T PLN02781 95 RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD----------K---PNYVHFH 161 (234)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC----------H---HHHHHHH
Confidence 6889999999998888886432 2345666554322111 126888887533 1 1111233
Q ss_pred HHHHHHccccCCC-cEEEEcccc
Q psy3543 84 SYLIETIPAIPSL-QCLLLENVK 105 (250)
Q Consensus 84 ~~~~~ii~~~~~P-~~i~~ENV~ 105 (250)
..+++ .++ | -.++++||-
T Consensus 162 ~~~~~---ll~-~GG~ii~dn~l 180 (234)
T PLN02781 162 EQLLK---LVK-VGGIIAFDNTL 180 (234)
T ss_pred HHHHH---hcC-CCeEEEEEcCC
Confidence 33333 344 5 677789983
No 95
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=46.82 E-value=39 Score=25.22 Aligned_cols=46 Identities=17% Similarity=0.341 Sum_probs=31.6
Q ss_pred EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEE
Q psy3543 98 CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAK 151 (250)
Q Consensus 98 ~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~ 151 (250)
-++.||.||. +..+...|.+.||++...... .-+.|. =.|+.++..
T Consensus 12 svlv~N~pGV-----L~RIaglFsRRgyNIeSLtvg--~te~~~-iSRmtivv~ 57 (96)
T PRK08178 12 ELTVRNHPGV-----MSHVCGLFARRAFNVEGILCL--PIQDGD-KSRIWLLVN 57 (96)
T ss_pred EEEEECCcCH-----HHHHHHHHhcCCcCeeeEEEe--ecCCCC-ceEEEEEEc
Confidence 4689999994 678899999999999865443 334443 134555543
No 96
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=46.80 E-value=20 Score=31.92 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=41.2
Q ss_pred EEEEEeCcHHHHHHHHHhCCCC-----CccccCccccccccccCCCCcEEEeCCCCchhhhcCCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPRT-----NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQK 73 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~-----~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~ 73 (250)
.+.|+|+++..+.....|.... .+...|.++..+..... .+|.++.-+||.+.-...+..
T Consensus 112 ~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~-~fd~VlvDaPCSg~G~i~r~p 176 (283)
T PF01189_consen 112 EIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPES-KFDRVLVDAPCSGLGTIRRNP 176 (283)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTT-TEEEEEEECSCCCGGGTTTCT
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccccc-ccchhhcCCCccchhhhhhcc
Confidence 6889999999998888875322 12234555444333332 589999999999987776643
No 97
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=46.41 E-value=39 Score=29.01 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=37.5
Q ss_pred EEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
..|.++|+++...+.-+.++++..++.+|+.++.+. ..+|+++.+...+
T Consensus 56 ~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~----~~fD~v~~~~~l~ 104 (258)
T PRK01683 56 ARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPP----QALDLIFANASLQ 104 (258)
T ss_pred CEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCC----CCccEEEEccChh
Confidence 468899999999998888887766777888765432 2689999886543
No 98
>PLN02366 spermidine synthase
Probab=46.10 E-value=2.3e+02 Score=25.58 Aligned_cols=128 Identities=12% Similarity=0.125 Sum_probs=73.7
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCC---------CccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRT---------NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~---------~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
.+-|..+|+|+...+..+..||.. .++.+|..+.-. +.++..+|+++.-.+ .+. + +...
T Consensus 115 v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~-~~~~~~yDvIi~D~~-dp~---~-------~~~~ 182 (308)
T PLN02366 115 VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK-NAPEGTYDAIIVDSS-DPV---G-------PAQE 182 (308)
T ss_pred CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh-hccCCCCCEEEEcCC-CCC---C-------chhh
Confidence 567888999999888888877542 234455443322 222236899998543 111 1 1122
Q ss_pred HH-HHHHHHc-cccCCCcEEEEccccC-CCcchHHHHHHHHHHhCC-CeEEEEEEccCCCCccccCceEEEEEEeCC
Q psy3543 82 AL-SYLIETI-PAIPSLQCLLLENVKG-FEGSRSRDLITSMLTRAG-FRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 154 (250)
Q Consensus 82 l~-~~~~~ii-~~~~~P~~i~~ENV~~-~~~~~~~~~i~~~L~~~G-Y~v~~~il~a~~~GvPq~R~R~~lva~~~~ 154 (250)
|+ .++++.+ +.++ |.-+++=|... +...+.+..+.+.|++.. ..+.+....-.-|+. -..-|++|++++
T Consensus 183 L~t~ef~~~~~~~L~-pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~---g~w~f~~as~~~ 255 (308)
T PLN02366 183 LFEKPFFESVARALR-PGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPS---GVIGFVLCSKEG 255 (308)
T ss_pred hhHHHHHHHHHHhcC-CCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCC---CceEEEEEECCC
Confidence 32 2445444 3455 88888766654 334567788888888876 344443333222321 456788998763
No 99
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=46.07 E-value=73 Score=27.61 Aligned_cols=117 Identities=14% Similarity=0.116 Sum_probs=72.3
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCC---------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPR---------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~---------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
.+.+.++|+|+...+..+..||. ..++.+|-...-.+.-.+ .+|+++.-.+= |.+ ...+
T Consensus 100 ~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~-~yDvIi~D~~d-p~~---------~~~~- 167 (246)
T PF01564_consen 100 VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEE-KYDVIIVDLTD-PDG---------PAPN- 167 (246)
T ss_dssp -SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST--EEEEEEESSS-TTS---------CGGG-
T ss_pred cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCC-cccEEEEeCCC-CCC---------Cccc-
Confidence 56788999999999998887753 224455554443322221 58999886651 111 0111
Q ss_pred HH-HHHHHHccc-cCCCcEEEEccccCCC-cchHHHHHHHHHHhCCCeEEEEEEccCCCCcc
Q psy3543 82 AL-SYLIETIPA-IPSLQCLLLENVKGFE-GSRSRDLITSMLTRAGFRFQEFLLSPTQFGVP 140 (250)
Q Consensus 82 l~-~~~~~ii~~-~~~P~~i~~ENV~~~~-~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvP 140 (250)
|| .++++.++. ++ |.-+++=|..... ....+..+.+.|++...++......-..||-.
T Consensus 168 l~t~ef~~~~~~~L~-~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~ 228 (246)
T PF01564_consen 168 LFTREFYQLCKRRLK-PDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSG 228 (246)
T ss_dssp GSSHHHHHHHHHHEE-EEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSS
T ss_pred ccCHHHHHHHHhhcC-CCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeeccc
Confidence 22 345555543 45 8888888875433 34678889999999998888887777777643
No 100
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=45.72 E-value=29 Score=31.11 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=33.5
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
-|.|+|+|+.+.+..+.++. ...++++|+.+++ ++ .+|++++.+|
T Consensus 60 ~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~---~~--~~d~VvaNlP 110 (294)
T PTZ00338 60 KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE---FP--YFDVCVANVP 110 (294)
T ss_pred cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc---cc--ccCEEEecCC
Confidence 47999999999988887653 2346678876653 33 5689999988
No 101
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=45.41 E-value=44 Score=23.68 Aligned_cols=45 Identities=7% Similarity=0.068 Sum_probs=32.0
Q ss_pred EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEE
Q psy3543 98 CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150 (250)
Q Consensus 98 ~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva 150 (250)
-++++|-|| .+..+...+...||++...-..... -| ...|+-++.
T Consensus 7 si~v~n~pG-----VL~Ri~~lf~rRGfnI~sl~v~~t~--~~-~~sriti~v 51 (76)
T PRK11152 7 TIKARFRPE-----VLERVLRVVRHRGFQVCSMNMTQNT--DA-QNINIELTV 51 (76)
T ss_pred EEEEECCcc-----HHHHHHHHHhcCCeeeeeEEeeecC--CC-CEEEEEEEE
Confidence 467899998 5788999999999999876554443 22 245665554
No 102
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=45.12 E-value=40 Score=28.81 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=35.5
Q ss_pred EEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
..+.++|+++.+.+.-+.+.+...++.+|+.++. ++...+|+++...+
T Consensus 65 ~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~---~~~~~fD~V~s~~~ 112 (251)
T PRK10258 65 SQVTALDLSPPMLAQARQKDAADHYLAGDIESLP---LATATFDLAWSNLA 112 (251)
T ss_pred CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCc---CCCCcEEEEEECch
Confidence 3678999999999988888765555678887654 23336899987654
No 103
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=43.13 E-value=36 Score=30.05 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=36.3
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCCchhhh
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTR 68 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ 68 (250)
-+.++|+++.|.+.-+.|... ..++.+|+.+. ++...+|+++.-||.-+.+.
T Consensus 140 ~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~~~~~fDlIvsNPPyi~~~~ 197 (284)
T TIGR00536 140 EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----LAGQKIDIIVSNPPYIDEED 197 (284)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----CcCCCccEEEECCCCCCcch
Confidence 578999999999988887421 23445665432 22226899999999987754
No 104
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=42.76 E-value=37 Score=29.60 Aligned_cols=51 Identities=14% Similarity=0.288 Sum_probs=38.2
Q ss_pred EEEEEEeCcHHHHHHHHHhCC---CCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFP---RTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~---~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
+-+.++|+|+..++..+..+. ...++++|+.+++..+.......+++|..|
T Consensus 53 ~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 53 KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEET
T ss_pred CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEec
Confidence 578999999999999999775 344778999988766532225578888888
No 105
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=42.16 E-value=39 Score=29.15 Aligned_cols=122 Identities=15% Similarity=0.229 Sum_probs=64.5
Q ss_pred EEEEEeCcHHHHHHHHHhCC---CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP---RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIET 89 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~---~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~i 89 (250)
.+.++|+|+......+.+++ +..++++|+.++....+. ..+++++.+| +. ....++..+++
T Consensus 53 ~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d--~~~~vvsNlP---y~----------i~~~il~~ll~- 116 (253)
T TIGR00755 53 KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP--KQLKVVSNLP---YN----------ISSPLIFKLLE- 116 (253)
T ss_pred cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC--CcceEEEcCC---hh----------hHHHHHHHHhc-
Confidence 48899999999999888864 334567787776543332 1248888887 11 12234444443
Q ss_pred ccccCCCcEEEEccc--cCCCc---chHHHHHHHHHHhCCCeEEEE-EEccCCCCccccCceEEEEEEeC
Q psy3543 90 IPAIPSLQCLLLENV--KGFEG---SRSRDLITSMLTRAGFRFQEF-LLSPTQFGVPNSRTRYYLIAKRS 153 (250)
Q Consensus 90 i~~~~~P~~i~~ENV--~~~~~---~~~~~~i~~~L~~~GY~v~~~-il~a~~~GvPq~R~R~~lva~~~ 153 (250)
..... ..++++..= ..+.. ++.+ ..+..+.+.-+.+... .+.+..| .|+-..-.-+|-...
T Consensus 117 ~~~~~-~~~~~~q~e~a~Rl~a~pg~~~y-~~lsv~~~~~~~~~~~~~v~~~~F-~P~PkVds~vv~l~~ 183 (253)
T TIGR00755 117 KPKFR-LAVLMVQKEVAERLTAKPGSKDY-GRLSVLVQYFANVEIVFKVPPSAF-YPPPKVDSAVVRLIP 183 (253)
T ss_pred cCCCc-eEEEEehHHHHHHHccCCCCCcc-cHHHHHHHHHcceEEEEEEchhhC-cCCCCeeEEEEEEEE
Confidence 11111 233333211 01111 1111 2233444444566543 5777777 777766666666554
No 106
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=42.13 E-value=1.2e+02 Score=28.34 Aligned_cols=50 Identities=26% Similarity=0.281 Sum_probs=31.1
Q ss_pred CchhhHHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEE
Q psy3543 77 DARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 77 d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
.+-..++..+..+....| + +.++++=-. ++...+.+.+.|+++||.+...
T Consensus 314 p~i~~~l~~v~~~~~~~k-~-~~vfgS~GW--~g~av~~i~~~l~~~g~~~~~~ 363 (388)
T COG0426 314 PPIQTALGYVLALAPKNK-L-AGVFGSYGW--SGEAVDLIEEKLKDLGFEFGFD 363 (388)
T ss_pred chHHHHHHHHHhccCcCc-e-EEEEeccCC--CCcchHHHHHHHHhcCcEEecc
Confidence 333444454555554444 3 555655432 3568889999999999987643
No 107
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=41.36 E-value=2.4e+02 Score=24.48 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=39.0
Q ss_pred EEEEEeCcHHHHHHHHHhCC--------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP--------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALS 84 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~--------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~ 84 (250)
.|.++|+++...+.-+.+.+ +..++++|+.++. +++..+|+++.+.-.. ...|+ ...+.
T Consensus 100 ~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp---~~~~sfD~V~~~~~l~---------~~~d~-~~~l~ 166 (261)
T PLN02233 100 KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP---FDDCYFDAITMGYGLR---------NVVDR-LKAMQ 166 (261)
T ss_pred EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---CCCCCEeEEEEecccc---------cCCCH-HHHHH
Confidence 67899999998887665432 2334567776653 3333689998654321 12232 34566
Q ss_pred HHHHHcc
Q psy3543 85 YLIETIP 91 (250)
Q Consensus 85 ~~~~ii~ 91 (250)
++.++++
T Consensus 167 ei~rvLk 173 (261)
T PLN02233 167 EMYRVLK 173 (261)
T ss_pred HHHHHcC
Confidence 6666654
No 108
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=41.10 E-value=38 Score=30.59 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=56.7
Q ss_pred CCCcEEEEEEeCcHHHHHHHHHhCCCCCccc-cCccccccccccC-CCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 8 AFSLEVVTAIDINTSANSVYKHNFPRTNLRG-RNIQSFSIEEINA-MSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 8 g~~~~~v~a~did~~a~~~y~~N~~~~~~~~-~dI~~~~~~~~~~-~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
.+|.+-|.|+|+|+.|.++-+.|.---.+-. .-.......+.+. ..+|++++--= .++=-.|...
T Consensus 182 kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL-------------A~vl~~La~~ 248 (300)
T COG2264 182 KLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL-------------AEVLVELAPD 248 (300)
T ss_pred HcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh-------------HHHHHHHHHH
Confidence 3457889999999999999998853211110 0011112222222 36788875321 1222234444
Q ss_pred HHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE
Q psy3543 86 LIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 86 ~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
+.+++ + |--.++ ..|++..+ .+.+++.+++.|+.+....
T Consensus 249 ~~~~l---k-pgg~lI--lSGIl~~q-~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 249 IKRLL---K-PGGRLI--LSGILEDQ-AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHHc---C-CCceEE--EEeehHhH-HHHHHHHHHhCCCeEeEEE
Confidence 44433 3 521111 13555443 7888999999999886544
No 109
>PTZ00357 methyltransferase; Provisional
Probab=40.48 E-value=41 Score=34.16 Aligned_cols=65 Identities=20% Similarity=0.101 Sum_probs=39.7
Q ss_pred hHHhhcCCCcEEEEEEeCcHHH-HHHHHH--hCCCC-----------CccccCcccccccc----c--cC--CCCcEE--
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSA-NSVYKH--NFPRT-----------NLRGRNIQSFSIEE----I--NA--MSPDVI-- 57 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a-~~~y~~--N~~~~-----------~~~~~dI~~~~~~~----~--~~--~~~Dll-- 57 (250)
+|++++|+.+ .|+|+|-|+.| .-+... |.+.+ .++..|++++...+ + +. ..+||+
T Consensus 720 rAak~~gvkV-rIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 720 HAVSALGVRL-RIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVS 798 (1072)
T ss_pred HHHHHcCCcE-EEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehH
Confidence 5678888755 46899999554 444444 44444 46788999886432 1 11 157886
Q ss_pred --EeCCCCchhh
Q psy3543 58 --LMSPPCQPFT 67 (250)
Q Consensus 58 --~~gpPCQ~fS 67 (250)
+|||=|.-.|
T Consensus 799 ELLGSFGDNELS 810 (1072)
T PTZ00357 799 ELLGSLGDNELS 810 (1072)
T ss_pred hhhcccccccCC
Confidence 4566555544
No 110
>KOG3045|consensus
Probab=39.47 E-value=96 Score=27.78 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=53.6
Q ss_pred CccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccccCCCcEEEEccccCCCcchHHH
Q psy3543 35 NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRD 114 (250)
Q Consensus 35 ~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~ 114 (250)
.++.+||+++..++- .+||.+.|. |..|.. + ...+.+.-|+++-- -.+++-|=-..|.+. .
T Consensus 213 ~V~~cDm~~vPl~d~---svDvaV~CL-----SLMgtn--~----~df~kEa~RiLk~g--G~l~IAEv~SRf~dv---~ 273 (325)
T KOG3045|consen 213 RVIACDMRNVPLEDE---SVDVAVFCL-----SLMGTN--L----ADFIKEANRILKPG--GLLYIAEVKSRFSDV---K 273 (325)
T ss_pred ceeeccccCCcCccC---cccEEEeeH-----hhhccc--H----HHHHHHHHHHhccC--ceEEEEehhhhcccH---H
Confidence 355678877655442 588988864 455532 1 23556777777643 367777766666543 3
Q ss_pred HHHHHHHhCCCeEEEEEEccCCC
Q psy3543 115 LITSMLTRAGFRFQEFLLSPTQF 137 (250)
Q Consensus 115 ~i~~~L~~~GY~v~~~il~a~~~ 137 (250)
.+++.|..+||.+...-+.-.+|
T Consensus 274 ~f~r~l~~lGF~~~~~d~~n~~F 296 (325)
T KOG3045|consen 274 GFVRALTKLGFDVKHKDVSNKYF 296 (325)
T ss_pred HHHHHHHHcCCeeeehhhhcceE
Confidence 48899999999987765444443
No 111
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=39.12 E-value=2.9e+02 Score=25.49 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=70.3
Q ss_pred hhcCC-CcEEEEEEeCcHHHHHHHHHhCCC-----CCcccc-CccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCC
Q psy3543 5 SNHAF-SLEVVTAIDINTSANSVYKHNFPR-----TNLRGR-NIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIAD 77 (250)
Q Consensus 5 ~~~g~-~~~~v~a~did~~a~~~y~~N~~~-----~~~~~~-dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d 77 (250)
-++|. |.++ .++|+|.....=-+.|+.. -.++.. |.+.+. +++..+|-++.-|| -|+......
T Consensus 213 iEagl~G~~v-iG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---l~~~~vdaIatDPP------YGrst~~~~ 282 (347)
T COG1041 213 IEAGLMGARV-IGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---LRDNSVDAIATDPP------YGRSTKIKG 282 (347)
T ss_pred HhhhhcCceE-eecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC---CCCCccceEEecCC------CCccccccc
Confidence 34443 5555 5679999988877777632 112333 666665 55435999999999 454433222
Q ss_pred ch-hhHHHHHHHHccccCCCc--EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEE
Q psy3543 78 AR-CTALSYLIETIPAIPSLQ--CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAK 151 (250)
Q Consensus 78 ~r-~~l~~~~~~ii~~~~~P~--~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~ 151 (250)
.. ..|+.++++-+.+.-++. +++.=. ......++++||.+...+-.- +=++=.|.+.+..
T Consensus 283 ~~l~~Ly~~~le~~~evLk~gG~~vf~~p----------~~~~~~~~~~~f~v~~~~~~~----~H~sLtR~i~v~~ 345 (347)
T COG1041 283 EGLDELYEEALESASEVLKPGGRIVFAAP----------RDPRHELEELGFKVLGRFTMR----VHGSLTRVIYVVR 345 (347)
T ss_pred ccHHHHHHHHHHHHHHHhhcCcEEEEecC----------CcchhhHhhcCceEEEEEEEe----ecCceEEEEEEEe
Confidence 22 457887776554432142 222222 233456778899987654433 2233356666554
No 112
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=38.26 E-value=36 Score=32.29 Aligned_cols=122 Identities=21% Similarity=0.260 Sum_probs=65.6
Q ss_pred EEEEEeCcHHHHHHHHHhCCC----CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCC--CCCchhh-----
Q psy3543 13 VVTAIDINTSANSVYKHNFPR----TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKD--IADARCT----- 81 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~----~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~--~~d~r~~----- 81 (250)
.+.++|+++.|.+.-+.|... ..++++|+.+.... ....+|+++..||=-+-+....... ..+++..
T Consensus 277 ~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~--~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~ 354 (423)
T PRK14966 277 FVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP--SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFS 354 (423)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc--cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCC
Confidence 578999999999988888532 23456666443211 1126899999998432221110000 0112211
Q ss_pred ----HHHHHHHHcc-ccCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEE
Q psy3543 82 ----ALSYLIETIP-AIPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYL 148 (250)
Q Consensus 82 ----l~~~~~~ii~-~~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~l 148 (250)
.+..+++.+. .++ |. ++++|- |. ...+.+.+.|++.||...... .|+ +.+.|+++
T Consensus 355 dGL~~yr~Ii~~a~~~Lk-pgG~lilEi--G~---~Q~e~V~~ll~~~Gf~~v~v~---kDl---~G~dR~v~ 415 (423)
T PRK14966 355 DGLSCIRTLAQGAPDRLA-EGGFLLLEH--GF---DQGAAVRGVLAENGFSGVETL---PDL---AGLDRVTL 415 (423)
T ss_pred chHHHHHHHHHHHHHhcC-CCcEEEEEE--Cc---cHHHHHHHHHHHCCCcEEEEE---EcC---CCCcEEEE
Confidence 2233443322 344 63 345543 22 345677888888898754433 333 45688765
No 113
>KOG1227|consensus
Probab=37.73 E-value=34 Score=31.05 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=19.6
Q ss_pred CcEEEEEEeCcHHHHHHHHHhC
Q psy3543 10 SLEVVTAIDINTSANSVYKHNF 31 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~ 31 (250)
|.+.|+|+|+||.+.+.++.|-
T Consensus 217 gAk~V~A~EwNp~svEaLrR~~ 238 (351)
T KOG1227|consen 217 GAKTVFACEWNPWSVEALRRNA 238 (351)
T ss_pred CccEEEEEecCHHHHHHHHHHH
Confidence 3678999999999999999885
No 114
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=36.34 E-value=2.8e+02 Score=23.79 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=51.5
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHc
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETI 90 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii 90 (250)
...|.++|+|+.+.+.-+.|.....+ . +...+...+. .+|++++... .+.-..++.++.++
T Consensus 142 ~~~v~giDis~~~l~~A~~n~~~~~~-~-~~~~~~~~~~---~fD~Vvani~-------------~~~~~~l~~~~~~~- 202 (250)
T PRK00517 142 AKKVLAVDIDPQAVEAARENAELNGV-E-LNVYLPQGDL---KADVIVANIL-------------ANPLLELAPDLARL- 202 (250)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCC-C-ceEEEccCCC---CcCEEEEcCc-------------HHHHHHHHHHHHHh-
Confidence 44589999999999988888643221 1 1111111111 5799886431 01112234444444
Q ss_pred cccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEE
Q psy3543 91 PAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 91 ~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
++ |.-.++ +.|+.. .....+...|++.||.+...
T Consensus 203 --Lk-pgG~li--lsgi~~-~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 203 --LK-PGGRLI--LSGILE-EQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred --cC-CCcEEE--EEECcH-hhHHHHHHHHHHCCCEEEEE
Confidence 44 522222 123322 34677889999999988654
No 115
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=33.44 E-value=79 Score=23.27 Aligned_cols=97 Identities=12% Similarity=0.207 Sum_probs=58.8
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
+++.+..-++++++.+|.++...+.+...++-. ...|+.++.... ++|+++.+.|- ..
T Consensus 17 ~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~--~~~~~~~ll~~~----~~D~V~I~tp~----------------~~ 74 (120)
T PF01408_consen 17 RALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP--VYTDLEELLADE----DVDAVIIATPP----------------SS 74 (120)
T ss_dssp HHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE--EESSHHHHHHHT----TESEEEEESSG----------------GG
T ss_pred HHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc--chhHHHHHHHhh----cCCEEEEecCC----------------cc
Confidence 345666556899999999999888887766543 355666554322 57888887772 11
Q ss_pred HHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCC
Q psy3543 82 ALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAG 124 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~G 124 (250)
.+..+..+++. -+.+++|=--.. +....+.+++..++.|
T Consensus 75 h~~~~~~~l~~---g~~v~~EKP~~~-~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 75 HAEIAKKALEA---GKHVLVEKPLAL-TLEEAEELVEAAKEKG 113 (120)
T ss_dssp HHHHHHHHHHT---TSEEEEESSSSS-SHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHc---CCEEEEEcCCcC-CHHHHHHHHHHHHHhC
Confidence 22333344432 356777754433 3345566666666554
No 116
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=32.08 E-value=89 Score=26.09 Aligned_cols=99 Identities=21% Similarity=0.337 Sum_probs=53.2
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
+-|.+.| .+++ .+|.++.+...+...+... .++.+++...++|+++ ||-. + +.-+
T Consensus 45 ~~L~~~G--~~Vv-v~D~~~~~~~~~~~~~g~~--------~v~~~~l~~~~~Dv~v---p~A~----~---~~I~---- 99 (200)
T cd01075 45 EHLLEEG--AKLI-VADINEEAVARAAELFGAT--------VVAPEEIYSVDADVFA---PCAL----G---GVIN---- 99 (200)
T ss_pred HHHHHCC--CEEE-EEcCCHHHHHHHHHHcCCE--------EEcchhhccccCCEEE---eccc----c---cccC----
Confidence 4566776 6776 7999999988887765321 1222333333688886 4432 1 1111
Q ss_pred HHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEE-EEEccC
Q psy3543 82 ALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQE-FLLSPT 135 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~-~il~a~ 135 (250)
.+. ++.++ .+ +++|--.+-.+. ..--+.|++.|=.+-. .+.|+.
T Consensus 100 --~~~---~~~l~-~~-~v~~~AN~~~~~---~~~~~~L~~~Gi~~~Pd~~~NaG 144 (200)
T cd01075 100 --DDT---IPQLK-AK-AIAGAANNQLAD---PRHGQMLHERGILYAPDYVVNAG 144 (200)
T ss_pred --HHH---HHHcC-CC-EEEECCcCccCC---HhHHHHHHHCCCEEeCceeeeCc
Confidence 111 23344 44 445544443332 3445567777866655 556665
No 117
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=29.74 E-value=3.4e+02 Score=22.86 Aligned_cols=78 Identities=13% Similarity=0.202 Sum_probs=44.8
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
-+.++|+++.+.+.-+.+... ..++++|+.++. ++ ++|+++.+...+-++ .+.+..++.++
T Consensus 81 ~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~--~~d~v~~~~~l~~~~--------~~~~~~~l~~i 147 (239)
T TIGR00740 81 KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---IK--NASMVILNFTLQFLP--------PEDRIALLTKI 147 (239)
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CC--CCCEEeeecchhhCC--------HHHHHHHHHHH
Confidence 478999999888777665322 234567776653 22 467877666533221 11233466666
Q ss_pred HHHccccCCCcEEEEcccc
Q psy3543 87 IETIPAIPSLQCLLLENVK 105 (250)
Q Consensus 87 ~~ii~~~~~P~~i~~ENV~ 105 (250)
.+.++.= -.+++.|.+.
T Consensus 148 ~~~Lkpg--G~l~i~d~~~ 164 (239)
T TIGR00740 148 YEGLNPN--GVLVLSEKFR 164 (239)
T ss_pred HHhcCCC--eEEEEeeccc
Confidence 6665431 3666666653
No 118
>PLN02672 methionine S-methyltransferase
Probab=29.72 E-value=55 Score=34.82 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=75.0
Q ss_pred EEEEEeCcHHHHHHHHHhCCC---------------------CCccccCccccccccccCCCCcEEEeCCCCchhhhcC-
Q psy3543 13 VVTAIDINTSANSVYKHNFPR---------------------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTG- 70 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~---------------------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag- 70 (250)
.|.|+|+++.|.+.-+.|-.. ..++++|+.+.... . ...+|+++..||==+-+-..
T Consensus 144 ~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~-~-~~~fDlIVSNPPYI~~~e~~~ 221 (1082)
T PLN02672 144 KVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD-N-NIELDRIVGCIPQILNPNPEA 221 (1082)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc-c-CCceEEEEECCCcCCCcchhh
Confidence 688999999999988887421 12345565433211 0 01589999999944322100
Q ss_pred ----------------------CCCCCCCchh-hHHHHHHHHcc-ccCCCc-EEEEccccCCCcchHHHHHH-HHHHhCC
Q psy3543 71 ----------------------LQKDIADARC-TALSYLIETIP-AIPSLQ-CLLLENVKGFEGSRSRDLIT-SMLTRAG 124 (250)
Q Consensus 71 ----------------------~~~~~~d~r~-~l~~~~~~ii~-~~~~P~-~i~~ENV~~~~~~~~~~~i~-~~L~~~G 124 (250)
...+..++.| .++..++.... .++ |. ++++|-= ...-+.+. +.+++.|
T Consensus 222 l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~-pgG~l~lEiG-----~~q~~~v~~~l~~~~g 295 (1082)
T PLN02672 222 MSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIK-PMGIMIFNMG-----GRPGQAVCERLFERRG 295 (1082)
T ss_pred cChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhcc-CCCEEEEEEC-----ccHHHHHHHHHHHHCC
Confidence 0001112222 23344444222 344 64 4555532 23455677 5888899
Q ss_pred CeE----EEEEEccCCCCcc-------ccCceE-EEEEEeCCC
Q psy3543 125 FRF----QEFLLSPTQFGVP-------NSRTRY-YLIAKRSPA 155 (250)
Q Consensus 125 Y~v----~~~il~a~~~GvP-------q~R~R~-~lva~~~~~ 155 (250)
|.. +.+|+.|+|--|. ++|.|+ |.++...+.
T Consensus 296 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1082)
T PLN02672 296 FRITKLWQTKINQAADTDISALVEIEKNSRHRFEFFMGLVGDQ 338 (1082)
T ss_pred CCeeEEeeehhhhccccchHHHHHHhhcCccceeeeeccCCCC
Confidence 875 4457888887753 567777 555554443
No 119
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=29.66 E-value=4.2e+02 Score=23.85 Aligned_cols=104 Identities=19% Similarity=0.150 Sum_probs=54.7
Q ss_pred CcEEEEEEeCcHHHHHHHHH---h---CCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHH
Q psy3543 10 SLEVVTAIDINTSANSVYKH---N---FPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTAL 83 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~---N---~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~ 83 (250)
+.+.|.++|.++......++ . .+...+...|+.++.. + ..+|+++..-= .- ...|+. .++
T Consensus 144 g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~---~-~~FD~V~s~~v------l~---H~~dp~-~~L 209 (322)
T PRK15068 144 GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA---L-KAFDTVFSMGV------LY---HRRSPL-DHL 209 (322)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---c-CCcCEEEECCh------hh---ccCCHH-HHH
Confidence 35568999999875543322 1 1223345667766643 2 26899885211 11 123443 355
Q ss_pred HHHHHHccccCCC-cEEEEccc--cCCC-----------c------chHHHHHHHHHHhCCCeEEEEE
Q psy3543 84 SYLIETIPAIPSL-QCLLLENV--KGFE-----------G------SRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 84 ~~~~~ii~~~~~P-~~i~~ENV--~~~~-----------~------~~~~~~i~~~L~~~GY~v~~~i 131 (250)
.++.+.+ + | -.+++|.. .+-. . -.....+.+.|++.||.....+
T Consensus 210 ~~l~~~L---k-pGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 210 KQLKDQL---V-PGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred HHHHHhc---C-CCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEE
Confidence 5555555 3 4 23344421 1100 0 0134678899999999876554
No 120
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=29.59 E-value=70 Score=27.27 Aligned_cols=133 Identities=14% Similarity=0.199 Sum_probs=67.5
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHHH-hCC--CC--------------CccccCccccccccccCCCCcEEEeCCCCch
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYKH-NFP--RT--------------NLRGRNIQSFSIEEINAMSPDVILMSPPCQP 65 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~~-N~~--~~--------------~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~ 65 (250)
.|.+.| ++ |.++|+.+.|++.+.. |.. .. .++++|+-+++++.+. .+|++.= |.-
T Consensus 54 ~La~~G--~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g--~fD~iyD---r~~ 125 (218)
T PF05724_consen 54 WLAEQG--HD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG--KFDLIYD---RTF 125 (218)
T ss_dssp HHHHTT--EE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH--SEEEEEE---CSS
T ss_pred HHHHCC--Ce-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC--CceEEEE---ecc
Confidence 355555 65 6889999999999733 331 10 1335566666655543 4666654 222
Q ss_pred hhhcCCCCCCCCchhhHHHHHHHHccccCCCc--EEEEccccCCCcchHH----HHHHHHHHhCCCeEEEEE----Ecc-
Q psy3543 66 FTRTGLQKDIADARCTALSYLIETIPAIPSLQ--CLLLENVKGFEGSRSR----DLITSMLTRAGFRFQEFL----LSP- 134 (250)
Q Consensus 66 fS~ag~~~~~~d~r~~l~~~~~~ii~~~~~P~--~i~~ENV~~~~~~~~~----~~i~~~L~~~GY~v~~~i----l~a- 134 (250)
|.... .+.|..-..++.++++-- .. .+.++--.+-..+..| +.+.+.| +-+|.+.... +..
T Consensus 126 l~Alp-----p~~R~~Ya~~l~~ll~p~--g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~-~~~f~i~~l~~~~~~~~~ 197 (218)
T PF05724_consen 126 LCALP-----PEMRERYAQQLASLLKPG--GRGLLITLEYPQGEMEGPPFSVTEEEVRELF-GPGFEIEELEEEDSIEEE 197 (218)
T ss_dssp TTTS------GGGHHHHHHHHHHCEEEE--EEEEEEEEES-CSCSSSSS----HHHHHHHH-TTTEEEEEEEEEE-TTT-
T ss_pred cccCC-----HHHHHHHHHHHHHHhCCC--CcEEEEEEEcCCcCCCCcCCCCCHHHHHHHh-cCCcEEEEEecccccccc
Confidence 22221 234554445555555431 24 4555543333333322 3444444 4678875432 222
Q ss_pred ---CCCCccccCceEEEEEE
Q psy3543 135 ---TQFGVPNSRTRYYLIAK 151 (250)
Q Consensus 135 ---~~~GvPq~R~R~~lva~ 151 (250)
...|+..-++++|++-.
T Consensus 198 ~~~~~~~~~~~~e~~~~l~~ 217 (218)
T PF05724_consen 198 PRFKSWGLSRFREKVYVLRR 217 (218)
T ss_dssp HHHHCCT-SS-EEEEEEEEE
T ss_pred cchhhcCcCceeEEEEEEEc
Confidence 24788999999988743
No 121
>PRK04457 spermidine synthase; Provisional
Probab=29.54 E-value=2.4e+02 Score=24.53 Aligned_cols=96 Identities=18% Similarity=0.211 Sum_probs=53.0
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.+.++|+|+...+.-+.+|.. ..++.+|..+.-. ..++ .+|+++... |...+. +......++
T Consensus 92 ~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~-~~~~-~yD~I~~D~----~~~~~~------~~~l~t~ef 159 (262)
T PRK04457 92 RQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA-VHRH-STDVILVDG----FDGEGI------IDALCTQPF 159 (262)
T ss_pred eEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH-hCCC-CCCEEEEeC----CCCCCC------ccccCcHHH
Confidence 478999999999998888742 1245667665432 2222 689998742 221111 100011233
Q ss_pred HHHcc-ccCCCcEEEEccccCCCcchHHHHHHHHHHhC
Q psy3543 87 IETIP-AIPSLQCLLLENVKGFEGSRSRDLITSMLTRA 123 (250)
Q Consensus 87 ~~ii~-~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~ 123 (250)
++.+. .++ |.-+++=|+.+- ...+..+++.|++.
T Consensus 160 l~~~~~~L~-pgGvlvin~~~~--~~~~~~~l~~l~~~ 194 (262)
T PRK04457 160 FDDCRNALS-SDGIFVVNLWSR--DKRYDRYLERLESS 194 (262)
T ss_pred HHHHHHhcC-CCcEEEEEcCCC--chhHHHHHHHHHHh
Confidence 33332 345 777777687642 23456666666554
No 122
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=29.52 E-value=1.2e+02 Score=24.64 Aligned_cols=46 Identities=24% Similarity=0.466 Sum_probs=32.9
Q ss_pred EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEE
Q psy3543 98 CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAK 151 (250)
Q Consensus 98 ~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~ 151 (250)
.+++||-|| .+..+...|.+.||++....+.+.. - +.-.|+.++..
T Consensus 5 sI~ven~pG-----vL~rI~~lf~rrg~NI~Sl~v~~t~--~-~~~sriti~V~ 50 (157)
T TIGR00119 5 SVLVENEPG-----VLSRVAGLFTRRGFNIESLTVGPTE--D-PDLSRMTIVVV 50 (157)
T ss_pred EEEEcCCCc-----HHHHHHHHHHhCCceEEEEEEeecC--C-CCEEEEEEEEE
Confidence 367899998 5788999999999999877666553 1 23445555544
No 123
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=28.99 E-value=86 Score=27.29 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=33.6
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEe
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILM 59 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~ 59 (250)
.+.++|+++.+...-..++++..+..+|+.++. ++...+|+++.
T Consensus 114 ~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp---~~~~sfD~I~~ 157 (272)
T PRK11088 114 QLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP---FADQSLDAIIR 157 (272)
T ss_pred eEEEECCCHHHHHHHHHhCCCCeEEEeecccCC---CcCCceeEEEE
Confidence 579999999999988888887766677877664 22336899985
No 124
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=28.51 E-value=25 Score=27.34 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=11.7
Q ss_pred HHHHHHHHccccCCCcEEEEccccCC-CcchHHHHHHHHHHhCCCeE
Q psy3543 82 ALSYLIETIPAIPSLQCLLLENVKGF-EGSRSRDLITSMLTRAGFRF 127 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~i~~ENV~~~-~~~~~~~~i~~~L~~~GY~v 127 (250)
.+.....+++..+ |.++ +|--..- .....+..+.+.|++.||.+
T Consensus 123 vL~g~~~~l~~~~-~~~i-~E~~~~~~~~~~~~~~i~~~L~~~Gy~~ 167 (167)
T PF05050_consen 123 VLKGARELLKKCR-PKVI-VEIHHNHYGRQESFREILDFLRDHGYRL 167 (167)
T ss_dssp HHHTTHHHHHHH---EEE-EE--S-----------------------
T ss_pred HhhCCcccHhHcC-cEEE-EEEcCCccccccccccccccccccccCC
Confidence 3344456677777 8888 9955432 22357888999999999974
No 125
>KOG0820|consensus
Probab=28.42 E-value=1.1e+02 Score=27.66 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=41.3
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCC------ccccCccccccccccCCCCcEEEeCCCCchhhh
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTN------LRGRNIQSFSIEEINAMSPDVILMSPPCQPFTR 68 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~------~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ 68 (250)
.|-++| +.|.|+|+|+.-+.-....+.+++ ++.+|.-+. +++ .+|+.+.-.|-|=-|.
T Consensus 75 ~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~---d~P--~fd~cVsNlPyqISSp 138 (315)
T KOG0820|consen 75 KLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT---DLP--RFDGCVSNLPYQISSP 138 (315)
T ss_pred HHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC---CCc--ccceeeccCCccccCH
Confidence 345555 477899999999888888876665 445565444 455 6789999888776553
No 126
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=28.18 E-value=53 Score=27.46 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=37.5
Q ss_pred ChHHhhcCCCcEEEEEEeCc---HHHHHHHHHhCCCCCccccC-ccccccccccCCCCcEEEeCCCCchhhhcC
Q psy3543 1 AERLSNHAFSLEVVTAIDIN---TSANSVYKHNFPRTNLRGRN-IQSFSIEEINAMSPDVILMSPPCQPFTRTG 70 (250)
Q Consensus 1 ~egL~~~g~~~~~v~a~did---~~a~~~y~~N~~~~~~~~~d-I~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag 70 (250)
+||+++.|+..+++...|.+ -.+|..-..+.+ -.+..| +.++- +.+. ++|.++.|.|.--....+
T Consensus 24 ~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~--c~~~dD~~~~i~-~~l~--~aD~iI~gsPvy~g~vsa 92 (207)
T COG0655 24 LEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKP--CVIKDDDMNEIY-EKLL--EADGIIFGSPVYFGNVSA 92 (207)
T ss_pred HHHHHHcCCEEEEEEecCCCcccchHHHhhhccCC--CCCCcccHHHHH-HHHH--HCCEEEEeCCeecCCchH
Confidence 58999999888888888774 233333333333 112222 12211 2244 689999999965444444
No 127
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=27.58 E-value=2.8e+02 Score=24.19 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=66.2
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHc
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETI 90 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii 90 (250)
--++.++|.++.-.+.-+..-|+..+..+||++..++. +.|++++ .|--+. . ..-..||. +++
T Consensus 54 ~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~----~~dllfa--------NAvlqW-l-pdH~~ll~---rL~ 116 (257)
T COG4106 54 DAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQ----PTDLLFA--------NAVLQW-L-PDHPELLP---RLV 116 (257)
T ss_pred CCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCC----ccchhhh--------hhhhhh-c-cccHHHHH---HHH
Confidence 34788999999988888888899888899999998754 5577743 333321 2 22234554 456
Q ss_pred cccCCCcEEEEccccCCCcchHHHHHHHHHHhC
Q psy3543 91 PAIPSLQCLLLENVKGFEGSRSRDLITSMLTRA 123 (250)
Q Consensus 91 ~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~ 123 (250)
.++. |--++-=.+|+-........+.+..++.
T Consensus 117 ~~L~-Pgg~LAVQmPdN~depsH~~mr~~A~~~ 148 (257)
T COG4106 117 SQLA-PGGVLAVQMPDNLDEPSHRLMRETADEA 148 (257)
T ss_pred HhhC-CCceEEEECCCccCchhHHHHHHHHhcC
Confidence 6667 9889888888877666666666666543
No 128
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=27.45 E-value=87 Score=26.41 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=36.4
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCch
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQP 65 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~ 65 (250)
...++|+|+.....-.++- ..++++|+.+- ...++...+|.++++--=|.
T Consensus 38 ~g~GvEid~~~v~~cv~rG--v~Viq~Dld~g-L~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 38 DGYGVEIDPDNVAACVARG--VSVIQGDLDEG-LADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred eEEEEecCHHHHHHHHHcC--CCEEECCHHHh-HhhCCCCCccEEehHhHHHh
Confidence 4689999999877666663 44789999874 34677768999998755443
No 129
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=27.32 E-value=1.3e+02 Score=25.19 Aligned_cols=48 Identities=8% Similarity=-0.048 Sum_probs=31.0
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
.|.++|+++...+.-+.|+. +..++.+|..+.... . ..+|+++.++++
T Consensus 104 ~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~--~~fD~Ii~~~~~ 156 (215)
T TIGR00080 104 LVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-L--APYDRIYVTAAG 156 (215)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-c--CCCCEEEEcCCc
Confidence 38899999998887766643 233445666543221 1 268999988664
No 130
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=27.00 E-value=4.7e+02 Score=23.59 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=16.5
Q ss_pred EEEEEeCcHHHHHHHHHhCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP 32 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~ 32 (250)
-|.++|+++.+.+.-+.|.+
T Consensus 168 ~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 168 IVSASDISAAMVAEAERRAK 187 (315)
T ss_pred EEEEEECCHHHHHHHHHHHH
Confidence 57899999999888777754
No 131
>PRK04266 fibrillarin; Provisional
Probab=26.69 E-value=4e+02 Score=22.67 Aligned_cols=118 Identities=14% Similarity=0.049 Sum_probs=62.2
Q ss_pred EEEEEeCcHHHHHHHHHhC---CCCCccccCcccccc-ccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSI-EEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIE 88 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~---~~~~~~~~dI~~~~~-~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ 88 (250)
.|+|+|+++...+....+. ++...+.+|+.+... ..+.. .+|+++...+ ..+....++.++.+
T Consensus 98 ~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~-~~D~i~~d~~------------~p~~~~~~L~~~~r 164 (226)
T PRK04266 98 VVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVE-KVDVIYQDVA------------QPNQAEIAIDNAEF 164 (226)
T ss_pred eEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccc-cCCEEEECCC------------ChhHHHHHHHHHHH
Confidence 6899999998766554432 334456678764211 12333 5899985322 01111123445555
Q ss_pred HccccCCCcEEEEccccC--C--Cc--chHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEe
Q psy3543 89 TIPAIPSLQCLLLENVKG--F--EG--SRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKR 152 (250)
Q Consensus 89 ii~~~~~P~~i~~ENV~~--~--~~--~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~ 152 (250)
+++.- =.+++. |+. + .. .+.++..++.|++.||.+...+ +. .|..+.-+.+|+..
T Consensus 165 ~LKpG--G~lvI~--v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~-~l----~p~~~~h~~~v~~~ 225 (226)
T PRK04266 165 FLKDG--GYLLLA--IKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVV-DL----EPYHKDHAAVVARK 225 (226)
T ss_pred hcCCC--cEEEEE--EecccccCcCCHHHHHHHHHHHHHHcCCeEEEEE-cC----CCCcCCeEEEEEEc
Confidence 54321 144442 221 1 11 2455667899999999976433 22 34455566666543
No 132
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=25.13 E-value=3.2e+02 Score=23.52 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=55.5
Q ss_pred EEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHcccc
Q psy3543 14 VTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAI 93 (250)
Q Consensus 14 v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~~ 93 (250)
|.++|.++. +|. +.+.|.-+.....-++..+|++..|.= .|-- .....|+.+...+.++++.-
T Consensus 75 vt~IDLns~--------~~~--I~qqDFm~rplp~~~~e~FdvIs~SLV------LNfV-P~p~~RG~Ml~r~~~fL~~~ 137 (219)
T PF11968_consen 75 VTRIDLNSQ--------HPG--ILQQDFMERPLPKNESEKFDVISLSLV------LNFV-PDPKQRGEMLRRAHKFLKPP 137 (219)
T ss_pred eEEeecCCC--------CCC--ceeeccccCCCCCCcccceeEEEEEEE------EeeC-CCHHHHHHHHHHHHHHhCCC
Confidence 566666653 222 345565554321112236788877653 2221 12346888999998888764
Q ss_pred CC---CcEEEEccccCCCcch--HHHHHHHHHHhCCCeEEEE
Q psy3543 94 PS---LQCLLLENVKGFEGSR--SRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 94 ~~---P~~i~~ENV~~~~~~~--~~~~i~~~L~~~GY~v~~~ 130 (250)
.. |..|++==-+=..+++ ..+.+...|+.+||.....
T Consensus 138 g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 138 GLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred CccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 41 3355543222233343 3457788888999987654
No 133
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=25.12 E-value=91 Score=28.53 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=29.3
Q ss_pred EEEEEeCcHHHHHHHHHhCCC----CCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPR----TNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~----~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.|.++|+++.|.+.-+.|... ..++..|+.+ .+. ..+|+++..||
T Consensus 222 ~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~----~~~-~~fDlIvsNPP 270 (342)
T PRK09489 222 RLTLSDVSAAALESSRATLAANGLEGEVFASNVFS----DIK-GRFDMIISNPP 270 (342)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc----ccC-CCccEEEECCC
Confidence 478999999988777665432 2233344422 222 27999999998
No 134
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=24.77 E-value=75 Score=29.13 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=57.1
Q ss_pred EEEEEEeCcHHHHHHHHHhCC-----CCCccccCcccccccc-----c---c-----CCCCcEEEeCCCCchhhhcCCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEE-----I---N-----AMSPDVILMSPPCQPFTRTGLQK 73 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~-----~---~-----~~~~Dll~~gpPCQ~fS~ag~~~ 73 (250)
..|.++|+++.|.+..+.|.. +..++.+|+.++.... + . ...+|+++.-|| ++|
T Consensus 220 ~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP-----R~G--- 291 (353)
T TIGR02143 220 RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP-----RAG--- 291 (353)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCC-----CCC---
Confidence 478999999999999998852 2235667776654321 1 0 113699999999 233
Q ss_pred CCCCchhhHHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEE
Q psy3543 74 DIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 74 ~~~d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
+...+++.|.. . .+++.++-=|. ++..=+..|. .||.+...
T Consensus 292 --------~~~~~l~~l~~-~-~~ivYvsC~p~-----tlaRDl~~L~-~~Y~l~~v 332 (353)
T TIGR02143 292 --------LDPDTCKLVQA-Y-ERILYISCNPE-----TLKANLEQLS-ETHRVERF 332 (353)
T ss_pred --------CcHHHHHHHHc-C-CcEEEEEcCHH-----HHHHHHHHHh-cCcEEEEE
Confidence 12234444543 3 57777776553 3443344454 35887654
No 135
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=24.70 E-value=1.6e+02 Score=24.05 Aligned_cols=46 Identities=20% Similarity=0.450 Sum_probs=32.4
Q ss_pred EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEE
Q psy3543 98 CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAK 151 (250)
Q Consensus 98 ~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~ 151 (250)
-+++||-|| .+..+...|.+.||++......+..- +.-.|+.++..
T Consensus 6 sV~veN~pG-----vL~rI~~lf~rrg~NI~Sl~v~~te~---~~~sriti~V~ 51 (161)
T PRK11895 6 SVLVENEPG-----VLSRVAGLFSRRGYNIESLTVGPTED---PGLSRMTIVTS 51 (161)
T ss_pred EEEEcCCCc-----HHHHHHHHHHhCCCcEEEEEeeecCC---CCEEEEEEEEE
Confidence 367899998 57889999999999998776555431 23345555543
No 136
>KOG2361|consensus
Probab=23.89 E-value=1.1e+02 Score=26.91 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=30.3
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCC-ccccCcccccccccc----CCCCcEEEeCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTN-LRGRNIQSFSIEEIN----AMSPDVILMSP 61 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~-~~~~dI~~~~~~~~~----~~~~Dll~~gp 61 (250)
.|+|||..+.|.+.++.|-.-.+ -....+.+++..++. ...+|++++=+
T Consensus 99 ~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 99 KVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred EEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 47999999999999999853221 124455555544422 22566655543
No 137
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=23.79 E-value=77 Score=26.64 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=29.7
Q ss_pred EEEEEEeCcHHHHHHHHHhCCCCCccccCcccccc-----ccccCCCCcEEEeCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSI-----EEINAMSPDVILMSP 61 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~-----~~~~~~~~Dll~~gp 61 (250)
..|.|+|+++ ..+.++..++++|+.+... +.+....+|+++..+
T Consensus 77 ~~V~aVDi~~------~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 77 GRVIACDILP------MDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred ceEEEEeccc------ccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 3789999998 2345666678899987541 123334789999754
No 138
>PRK06922 hypothetical protein; Provisional
Probab=23.65 E-value=2.2e+02 Score=28.84 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=47.7
Q ss_pred EEEEEeCcHHHHHHHHHhCCC----CCccccCccccccccccCCCCcEEEeCCCCchhhh----cCCCCCCCC-chhhHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPR----TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTR----TGLQKDIAD-ARCTAL 83 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~----~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~----ag~~~~~~d-~r~~l~ 83 (250)
-+.++|+++.+.+..+.+.+. ..++.+|+.++. ..++...+|+++.+++-+.+.. .+. ..++ .....+
T Consensus 444 kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp-~~fedeSFDvVVsn~vLH~L~syIp~~g~--~f~~edl~kiL 520 (677)
T PRK06922 444 RIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS-SSFEKESVDTIVYSSILHELFSYIEYEGK--KFNHEVIKKGL 520 (677)
T ss_pred EEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc-cccCCCCEEEEEEchHHHhhhhhcccccc--cccHHHHHHHH
Confidence 567999999988877766432 223456766542 2244447899998876543321 111 1111 122355
Q ss_pred HHHHHHccccCCCcEEEEccc
Q psy3543 84 SYLIETIPAIPSLQCLLLENV 104 (250)
Q Consensus 84 ~~~~~ii~~~~~P~~i~~ENV 104 (250)
.++.++++.- -.+++.|.+
T Consensus 521 reI~RVLKPG--GrLII~D~v 539 (677)
T PRK06922 521 QSAYEVLKPG--GRIIIRDGI 539 (677)
T ss_pred HHHHHHcCCC--cEEEEEeCc
Confidence 5555555321 267776654
No 139
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=23.28 E-value=69 Score=20.28 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=15.9
Q ss_pred CCcchHHHHHHHHHHhCCCe
Q psy3543 107 FEGSRSRDLITSMLTRAGFR 126 (250)
Q Consensus 107 ~~~~~~~~~i~~~L~~~GY~ 126 (250)
-.+.++.+.+.+..+++||.
T Consensus 25 ~vs~~tr~rI~~~a~~lgY~ 44 (46)
T PF00356_consen 25 RVSEETRERILEAAEELGYR 44 (46)
T ss_dssp SSTHHHHHHHHHHHHHHTB-
T ss_pred CCCHHHHHHHHHHHHHHCCC
Confidence 34557899999999999996
No 140
>PLN02476 O-methyltransferase
Probab=22.85 E-value=1.9e+02 Score=25.80 Aligned_cols=75 Identities=15% Similarity=0.178 Sum_probs=44.0
Q ss_pred EEEEEeCcHHHHHHHHHhCCCC------CccccCccccccccc---cCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPRT------NLRGRNIQSFSIEEI---NAMSPDVILMSPPCQPFTRTGLQKDIADARCTAL 83 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~------~~~~~dI~~~~~~~~---~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~ 83 (250)
.+.++|.++...+.-+.|+... .++.+|..++-++-. ....+|+++...+ | ..+
T Consensus 145 ~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~----------K-------~~Y 207 (278)
T PLN02476 145 CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD----------K-------RMY 207 (278)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC----------H-------HHH
Confidence 4789999999988888887433 234455554433211 1126888888765 1 123
Q ss_pred HHHHHH-ccccCCC-cEEEEcccc
Q psy3543 84 SYLIET-IPAIPSL-QCLLLENVK 105 (250)
Q Consensus 84 ~~~~~i-i~~~~~P-~~i~~ENV~ 105 (250)
..+++. ++.++ | -.+++.||-
T Consensus 208 ~~y~e~~l~lL~-~GGvIV~DNvL 230 (278)
T PLN02476 208 QDYFELLLQLVR-VGGVIVMDNVL 230 (278)
T ss_pred HHHHHHHHHhcC-CCcEEEEecCc
Confidence 333332 33344 5 667889993
No 141
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=22.27 E-value=1.4e+02 Score=24.51 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=28.8
Q ss_pred EEEEEeCcHHHHHHHHHh-----CCCCCccccCccccccccccCCCCcEEEeC
Q psy3543 13 VVTAIDINTSANSVYKHN-----FPRTNLRGRNIQSFSIEEINAMSPDVILMS 60 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N-----~~~~~~~~~dI~~~~~~~~~~~~~Dll~~g 60 (250)
.|.++|+++.+.+..+.| ..+..++++|+.++.. ...+|++++.
T Consensus 68 ~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----~~~fD~I~s~ 116 (181)
T TIGR00138 68 KLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----EEQFDVITSR 116 (181)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----cCCccEEEeh
Confidence 478999999876655544 2234456778877532 2278998864
No 142
>PRK06202 hypothetical protein; Provisional
Probab=22.25 E-value=2.2e+02 Score=23.90 Aligned_cols=47 Identities=23% Similarity=0.160 Sum_probs=29.4
Q ss_pred EEEEEeCcHHHHHHHHHhCCC--CCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPR--TNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~--~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.+.++|+++.+.+.-+.+... ..+...+...+.. ....+|+++.+.-
T Consensus 90 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~---~~~~fD~V~~~~~ 138 (232)
T PRK06202 90 EVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVA---EGERFDVVTSNHF 138 (232)
T ss_pred EEEEEcCCHHHHHHHHhccccCCCeEEEEecccccc---cCCCccEEEECCe
Confidence 478999999999887776532 2222333333321 2236899998754
No 143
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=22.15 E-value=98 Score=28.35 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=27.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhC-----CCCCccccCcccccc-------------ccccCCCCcEEEeCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSI-------------EEINAMSPDVILMSPP 62 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~-------------~~~~~~~~Dll~~gpP 62 (250)
++-|.|+|+++.|.+.-+.|. .+..++.++..++.. -++....+|+++.-||
T Consensus 218 ~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 218 AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 567899999999887776663 222334444443321 0122236799999999
No 144
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=22.14 E-value=99 Score=28.15 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=30.1
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCC-c-------cccCccccccccc-cCCCCcEEEeCCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTN-L-------RGRNIQSFSIEEI-NAMSPDVILMSPPC 63 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~-~-------~~~dI~~~~~~~~-~~~~~Dll~~gpPC 63 (250)
-+.|+|||+.|.+.-+.|....+ + .+.|...+....+ +...+|+++.-||=
T Consensus 140 ~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf 199 (321)
T PRK11727 140 RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPF 199 (321)
T ss_pred EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCC
Confidence 36889999999988888753321 1 1112222211111 12368999999993
No 145
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=21.85 E-value=2.6e+02 Score=23.03 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=47.6
Q ss_pred CCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHH-HccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE
Q psy3543 53 SPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIE-TIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 53 ~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~-ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
.+|+++. .||..-+.+.-..|..| +|...... .++..+ |-+|+-.+-+ .+.....=+..|+++||.+-.
T Consensus 75 ~aD~~vI-aPATantiAkiA~GiaD---~Llt~~a~~~L~~~~-pv~i~P~~m~---~~~~~~~Nl~~L~~~G~~ii~-- 144 (181)
T TIGR00421 75 PFDGMVV-VPCSMKTLSAIANGYAD---NLITRAADVCLKERR-KLVLVPRETP---LNSIHLENMLRLSRMGAIILP-- 144 (181)
T ss_pred hhCEEEE-ecCCHhHHHHHHcccCC---CHHHHHHHHHHhcCC-CEEEEeCCCc---CCHHHHHHHHHHHHCCCEEEC--
Confidence 4675544 57888887765556655 35555544 556666 8888773222 234445556788899998742
Q ss_pred EccCCCCcccc
Q psy3543 132 LSPTQFGVPNS 142 (250)
Q Consensus 132 l~a~~~GvPq~ 142 (250)
-.+..||-|++
T Consensus 145 P~~g~~~~p~~ 155 (181)
T TIGR00421 145 PMPAFYTRPKS 155 (181)
T ss_pred CCCcccCCCCC
Confidence 23334555543
No 146
>PRK05569 flavodoxin; Provisional
Probab=21.73 E-value=3.7e+02 Score=20.44 Aligned_cols=78 Identities=12% Similarity=0.303 Sum_probs=41.3
Q ss_pred CccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHcccc--CCCcEEEEccccCCCcchHHHHHH
Q psy3543 40 NIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAI--PSLQCLLLENVKGFEGSRSRDLIT 117 (250)
Q Consensus 40 dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~~--~~P~~i~~ENV~~~~~~~~~~~i~ 117 (250)
++.+.+..++. +.|.++.|.|+-...... . .-+..+++.+... +.-+++++- .-|.-.....+.+.
T Consensus 37 ~~~~~~~~~~~--~~d~iilgsPty~~~~~~------~---~~~~~~~~~l~~~~~~~K~v~~f~-t~g~~~~~~~~~~~ 104 (141)
T PRK05569 37 HVADAKVEDVL--EADAVAFGSPSMDNNNIE------Q---EEMAPFLDQFKLTPNENKKCILFG-SYGWDNGEFMKLWK 104 (141)
T ss_pred ECCcCCHHHHh--hCCEEEEECCCcCCCcCC------h---HHHHHHHHHhhccCcCCCEEEEEe-CCCCCCCcHHHHHH
Confidence 34444444555 789999999964322111 0 1223344433322 112333333 33544445677788
Q ss_pred HHHHhCCCeEEE
Q psy3543 118 SMLTRAGFRFQE 129 (250)
Q Consensus 118 ~~L~~~GY~v~~ 129 (250)
+.|+..|+.+..
T Consensus 105 ~~l~~~g~~~~~ 116 (141)
T PRK05569 105 DRMKDYGFNVIG 116 (141)
T ss_pred HHHHHCCCeEee
Confidence 888999987744
No 147
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=21.72 E-value=1.1e+02 Score=29.54 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=32.3
Q ss_pred EEEEEEeCcHHHHHHHHHhCCCCC-----ccccCccccc----cccccCCCCcEEEeCCCCchh
Q psy3543 12 EVVTAIDINTSANSVYKHNFPRTN-----LRGRNIQSFS----IEEINAMSPDVILMSPPCQPF 66 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~~~-----~~~~dI~~~~----~~~~~~~~~Dll~~gpPCQ~f 66 (250)
..++++|+|+.+....+.|..... +.+.|...-. ..... .+|++++-||=-..
T Consensus 64 ~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~--~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 64 LNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD--LFDIVITNPPYGRL 125 (524)
T ss_pred eeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC--cccEEEeCCCcccc
Confidence 457899999999998887743221 2222211110 11112 68999999996654
No 148
>PHA01632 hypothetical protein
Probab=21.59 E-value=1.3e+02 Score=20.23 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=24.2
Q ss_pred cEEEEccccCCCcchHH-HHHHHHHHhCC---CeEEEEEEccCCCCc
Q psy3543 97 QCLLLENVKGFEGSRSR-DLITSMLTRAG---FRFQEFLLSPTQFGV 139 (250)
Q Consensus 97 ~~i~~ENV~~~~~~~~~-~~i~~~L~~~G---Y~v~~~il~a~~~Gv 139 (250)
-++++|.||.--+.+.+ ..+-..|.+.+ =+=...++|+..+|+
T Consensus 17 iyilieqvp~kpteeelrkvlpkilkdyanmie~gk~ki~ds~ewgi 63 (64)
T PHA01632 17 IYILIEQVPQKPTEEELRKVLPKILKDYANMIENGKIKILDSKEWGI 63 (64)
T ss_pred EEEehhhcCCCCCHHHHHHHHHHHHHHHHHHHhcCceEEeccccccc
Confidence 57899999986543222 22222232211 112457899988885
No 149
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=21.30 E-value=3.7e+02 Score=22.05 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=43.7
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccc--------------c-ccCCCCcEEEeCCCCchh
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIE--------------E-INAMSPDVILMSPPCQPF 66 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~--------------~-~~~~~~Dll~~gpPCQ~f 66 (250)
-+|.++| ++ |.++|+|+.-.+..+.-. .++....+.++-.+ + +. +.|+++.+-|....
T Consensus 17 ~~lA~~G--~~-V~g~D~~~~~v~~l~~g~--~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~--~adv~~I~VpTP~~ 89 (185)
T PF03721_consen 17 AALAEKG--HQ-VIGVDIDEEKVEALNNGE--LPIYEPGLDELLKENVSAGRLRATTDIEEAIK--DADVVFICVPTPSD 89 (185)
T ss_dssp HHHHHTT--SE-EEEE-S-HHHHHHHHTTS--SSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--H-SEEEE----EBE
T ss_pred HHHHhCC--CE-EEEEeCChHHHHHHhhcc--ccccccchhhhhccccccccchhhhhhhhhhh--ccceEEEecCCCcc
Confidence 4677777 54 567999999888766543 22222222222211 1 22 68999999985544
Q ss_pred hhcCCCCCCCCchhhHHHHHHHH-ccccCCCcEEEEccccC
Q psy3543 67 TRTGLQKDIADARCTALSYLIET-IPAIPSLQCLLLENVKG 106 (250)
Q Consensus 67 S~ag~~~~~~d~r~~l~~~~~~i-i~~~~~P~~i~~ENV~~ 106 (250)
. .+..| -+.+...++- ...+++...+++|----
T Consensus 90 ~-----~~~~D--ls~v~~a~~~i~~~l~~~~lvV~~STvp 123 (185)
T PF03721_consen 90 E-----DGSPD--LSYVESAIESIAPVLRPGDLVVIESTVP 123 (185)
T ss_dssp T-----TTSBE--THHHHHHHHHHHHHHCSCEEEEESSSSS
T ss_pred c-----cCCcc--HHHHHHHHHHHHHHHhhcceEEEccEEE
Confidence 3 12222 2244444443 34445247788886543
No 150
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=21.05 E-value=1.6e+02 Score=24.96 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=30.6
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCC---CccccCccccccccccCCCCcEEEeCCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRT---NLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~---~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
++-+.++|+.+.|.+.-+....+. .+...|+.+. .+...+|+|+.|-=.
T Consensus 65 Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~----~P~~~FDLIV~SEVl 116 (201)
T PF05401_consen 65 CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF----WPEGRFDLIVLSEVL 116 (201)
T ss_dssp EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-------SS-EEEEEEES-G
T ss_pred hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC----CCCCCeeEEEEehHh
Confidence 467899999999999888776543 3455666444 344478999987553
No 151
>PRK05568 flavodoxin; Provisional
Probab=21.00 E-value=3.8e+02 Score=20.34 Aligned_cols=77 Identities=13% Similarity=0.256 Sum_probs=40.5
Q ss_pred CccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHcc-ccCCC-cEEEEccccCCCcchHHHHHH
Q psy3543 40 NIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIP-AIPSL-QCLLLENVKGFEGSRSRDLIT 117 (250)
Q Consensus 40 dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~-~~~~P-~~i~~ENV~~~~~~~~~~~i~ 117 (250)
|+.+.+..++. +.|.++.|.|.-.+. ...+ ..+..+++-+. ..+ . +++++-. -|.-.....+.+.
T Consensus 37 ~~~~~~~~~~~--~~d~iilgsp~y~~~-------~~~~--~~~~~f~~~~~~~~~-~k~~~~f~t-~G~~~~~~~~~~~ 103 (142)
T PRK05568 37 NVSEASVDDVK--GADVVALGSPAMGDE-------VLEE--GEMEPFVESISSLVK-GKKLVLFGS-YGWGDGEWMRDWV 103 (142)
T ss_pred ECCCCCHHHHH--hCCEEEEECCccCcc-------cccc--hhHHHHHHHhhhhhC-CCEEEEEEc-cCCCCChHHHHHH
Confidence 44444444555 789999999963221 1100 11222332221 122 2 3344443 4554456778888
Q ss_pred HHHHhCCCeEEE
Q psy3543 118 SMLTRAGFRFQE 129 (250)
Q Consensus 118 ~~L~~~GY~v~~ 129 (250)
+.|+.+|+.+..
T Consensus 104 ~~l~~~g~~~~~ 115 (142)
T PRK05568 104 ERMEGYGANLVN 115 (142)
T ss_pred HHHHHCCCEEeC
Confidence 889999987644
No 152
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=20.88 E-value=6.5e+02 Score=23.02 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=66.2
Q ss_pred EEEEEEeCcHHHHHHHHHhCC--CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP--RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIET 89 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~--~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~i 89 (250)
..+.++|+++...+.-+.+.+ +..++.+|+.++. ++...+|+++....-.. ..|+. ..+.++.++
T Consensus 138 ~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp---~~~~sFDvVIs~~~L~~---------~~d~~-~~L~e~~rv 204 (340)
T PLN02490 138 KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP---FPTDYADRYVSAGSIEY---------WPDPQ-RGIKEAYRV 204 (340)
T ss_pred CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC---CCCCceeEEEEcChhhh---------CCCHH-HHHHHHHHh
Confidence 357789999988777766643 2334566666543 22235898887432111 12332 466666666
Q ss_pred ccccCCCcEEEEcccc-CC-Cc---------chHHHHHHHHHHhCCCeEEEE-EEccCCCCccccCceEEE
Q psy3543 90 IPAIPSLQCLLLENVK-GF-EG---------SRSRDLITSMLTRAGFRFQEF-LLSPTQFGVPNSRTRYYL 148 (250)
Q Consensus 90 i~~~~~P~~i~~ENV~-~~-~~---------~~~~~~i~~~L~~~GY~v~~~-il~a~~~GvPq~R~R~~l 148 (250)
++.- =.+++++-+. .. .. ....+.+.+.|++.||..... .+.+..| -..+|.-+++
T Consensus 205 LkPG--G~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~-~~~~~~~~~~ 272 (340)
T PLN02490 205 LKIG--GKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWY-RGVRRHGLIM 272 (340)
T ss_pred cCCC--cEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhc-ccccccccee
Confidence 6532 2555555432 11 00 124578889999999986443 3444332 2244444333
No 153
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=20.63 E-value=1.7e+02 Score=24.07 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=50.4
Q ss_pred CCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEE---E
Q psy3543 53 SPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQ---E 129 (250)
Q Consensus 53 ~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~---~ 129 (250)
.+|+++. -||..-+.+.--.|..| +|....+...+..+ |.+++----..+..+...+.=++.|++.|+.+- .
T Consensus 76 ~aD~~vV-aPaSanTlakiA~GiaD---nLlt~~a~a~~~~~-pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~ 150 (177)
T TIGR02113 76 KADLFLV-APASANTIAHLAHGFAD---NIVTSVALALPPET-PKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKE 150 (177)
T ss_pred hhCEEEE-EeCCHHHHHHHHcCcCC---cHHHHHHHHcCCCC-CEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCc
Confidence 4675444 57888887665556655 34444444455455 877765444444455677778899999998774 2
Q ss_pred EEEccCCCC
Q psy3543 130 FLLSPTQFG 138 (250)
Q Consensus 130 ~il~a~~~G 138 (250)
..|-+.+.|
T Consensus 151 g~la~g~~g 159 (177)
T TIGR02113 151 SLLACGDYG 159 (177)
T ss_pred CcccCCCcc
Confidence 345555555
No 154
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=20.35 E-value=2.5e+02 Score=20.27 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=27.8
Q ss_pred EEEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeC
Q psy3543 12 EVVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMS 60 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~g 60 (250)
..+.++|+++.+.+.-+.|. +...++..|+...... ... .+|+++.+
T Consensus 44 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~D~v~~~ 95 (124)
T TIGR02469 44 GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-SLP-EPDRVFIG 95 (124)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-hcC-CCCEEEEC
Confidence 35799999999887766553 2223344555432211 112 68998875
No 155
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=20.29 E-value=5.7e+02 Score=22.15 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=32.8
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
++|.+.+.++++++.+|.++...+.+...+.. . ...|+.++. . ++|+++-+.|
T Consensus 18 ~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~-~-~~~~~~ell----~--~~DvVvi~a~ 70 (265)
T PRK13304 18 KAILSGRINAELYAFYDRNLEKAENLASKTGA-K-ACLSIDELV----E--DVDLVVECAS 70 (265)
T ss_pred HHHHcCCCCeEEEEEECCCHHHHHHHHHhcCC-e-eECCHHHHh----c--CCCEEEEcCC
Confidence 45555544688999999999877766654432 1 123443332 2 6889887654
No 156
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=20.23 E-value=3.1e+02 Score=22.62 Aligned_cols=45 Identities=24% Similarity=0.540 Sum_probs=33.4
Q ss_pred EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEcc-CCCCccccCceEEEEEE
Q psy3543 98 CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSP-TQFGVPNSRTRYYLIAK 151 (250)
Q Consensus 98 ~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a-~~~GvPq~R~R~~lva~ 151 (250)
.++.||-||+ +..+...|.+.||++......+ .+-|++ |+-++..
T Consensus 6 svlv~n~PGV-----L~RIt~lFsrRg~NIesLsv~~t~~~~~s----r~TIvv~ 51 (174)
T CHL00100 6 SVLVEDESGV-----LTRIAGLFARRGFNIESLAVGPAEQKGIS----RITMVVP 51 (174)
T ss_pred EEEEeCcCCH-----HHHHHHHHHhCCCCeeEEEeeEcCCCCcc----EEEEEEE
Confidence 4778999984 6789999999999998876533 355666 6666643
Done!