Query psy3543
Match_columns 250
No_of_seqs 207 out of 1541
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 19:21:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h0n_A DNMT2; SAH binding, tra 100.0 3.3E-57 1.1E-61 409.1 19.9 229 2-249 18-246 (333)
2 3qv2_A 5-cytosine DNA methyltr 100.0 2.1E-55 7E-60 396.4 20.8 219 2-250 25-249 (327)
3 1g55_A DNA cytosine methyltran 100.0 1.7E-49 5.9E-54 360.1 18.0 236 2-249 17-258 (343)
4 3ubt_Y Modification methylase 100.0 2.6E-44 8.9E-49 323.0 13.9 148 2-155 15-165 (331)
5 3me5_A Cytosine-specific methy 100.0 5.3E-43 1.8E-47 329.3 15.6 220 2-247 103-374 (482)
6 2c7p_A Modification methylase 100.0 1.8E-41 6.3E-46 305.6 16.0 147 2-155 26-175 (327)
7 4dkj_A Cytosine-specific methy 100.0 3.2E-41 1.1E-45 311.2 14.6 151 2-154 25-239 (403)
8 3g7u_A Cytosine-specific methy 100.0 1.3E-40 4.5E-45 305.1 13.8 173 2-180 17-205 (376)
9 4ft4_B DNA (cytosine-5)-methyl 100.0 1.8E-38 6.1E-43 314.8 10.9 153 2-155 227-487 (784)
10 3swr_A DNA (cytosine-5)-methyl 100.0 1.8E-36 6.1E-41 304.1 13.8 152 2-155 555-724 (1002)
11 3av4_A DNA (cytosine-5)-methyl 100.0 3.5E-35 1.2E-39 300.8 13.6 152 2-155 866-1035(1330)
12 2qrv_A DNA (cytosine-5)-methyl 100.0 1.1E-34 3.8E-39 257.7 12.3 144 2-154 31-183 (295)
13 2pv0_B DNA (cytosine-5)-methyl 99.9 6.1E-27 2.1E-31 212.0 4.6 139 3-177 202-348 (386)
14 2qrv_B DNA (cytosine-5)-methyl 99.9 3.6E-26 1.2E-30 194.4 6.1 112 28-155 55-174 (230)
15 2igt_A SAM dependent methyltra 97.7 6.5E-05 2.2E-09 67.0 6.9 135 13-151 177-323 (332)
16 3cgg_A SAM-dependent methyltra 96.7 0.021 7.2E-07 45.0 11.4 125 13-153 70-195 (195)
17 2frn_A Hypothetical protein PH 95.9 0.04 1.4E-06 47.2 9.7 98 12-129 149-253 (278)
18 3q87_B N6 adenine specific DNA 95.6 0.44 1.5E-05 37.3 13.9 120 13-155 46-165 (170)
19 3c0k_A UPF0064 protein YCCW; P 95.6 0.021 7.2E-07 51.6 6.7 123 11-138 243-377 (396)
20 1wy7_A Hypothetical protein PH 95.2 0.17 5.8E-06 40.5 10.3 95 11-128 72-170 (207)
21 3lpm_A Putative methyltransfer 94.8 0.34 1.2E-05 40.6 11.5 130 13-155 74-221 (259)
22 2yxd_A Probable cobalt-precorr 94.1 0.37 1.3E-05 37.2 9.6 98 11-135 57-159 (183)
23 3e8s_A Putative SAM dependent 93.6 1 3.5E-05 35.9 11.8 130 4-152 70-226 (227)
24 3lcc_A Putative methyl chlorid 92.9 1.1 3.9E-05 36.4 11.1 128 13-154 90-228 (235)
25 2ozv_A Hypothetical protein AT 92.6 1.6 5.3E-05 36.7 11.8 55 12-66 61-128 (260)
26 3h2b_A SAM-dependent methyltra 92.5 2.2 7.6E-05 33.6 12.1 123 13-155 65-197 (203)
27 1ne2_A Hypothetical protein TA 92.5 0.59 2E-05 37.1 8.5 92 11-128 74-165 (200)
28 1ixk_A Methyltransferase; open 91.5 0.63 2.1E-05 40.5 8.2 56 13-71 145-205 (315)
29 3evz_A Methyltransferase; NYSG 91.4 2.5 8.5E-05 34.1 11.4 115 12-132 80-205 (230)
30 3k6r_A Putative transferase PH 91.2 0.78 2.7E-05 39.5 8.3 98 12-129 149-253 (278)
31 3hnr_A Probable methyltransfer 91.1 3.3 0.00011 33.0 11.7 119 13-155 69-214 (220)
32 2b78_A Hypothetical protein SM 91.1 0.17 5.8E-06 45.5 4.2 111 10-126 234-355 (385)
33 2yx1_A Hypothetical protein MJ 90.3 0.84 2.9E-05 40.1 7.9 90 10-127 215-311 (336)
34 1y8c_A S-adenosylmethionine-de 90.3 1.7 5.8E-05 35.1 9.3 45 13-61 61-109 (246)
35 2qm3_A Predicted methyltransfe 90.2 1.6 5.5E-05 38.7 9.8 104 12-131 196-307 (373)
36 3dtn_A Putative methyltransfer 90.0 1 3.5E-05 36.5 7.7 112 13-138 70-219 (234)
37 3a27_A TYW2, uncharacterized p 89.7 1.5 5.1E-05 37.1 8.7 98 13-130 145-248 (272)
38 3ajd_A Putative methyltransfer 89.1 0.59 2E-05 39.6 5.8 60 12-71 109-174 (274)
39 3m33_A Uncharacterized protein 89.1 1.5 5E-05 35.6 8.1 118 13-155 72-220 (226)
40 3gdh_A Trimethylguanosine synt 88.9 0.28 9.4E-06 40.3 3.4 55 12-70 101-161 (241)
41 4dmg_A Putative uncharacterize 88.6 0.29 9.8E-06 44.3 3.5 110 10-128 236-352 (393)
42 1iy9_A Spermidine synthase; ro 88.4 10 0.00035 32.0 13.2 128 11-153 99-236 (275)
43 3dh0_A SAM dependent methyltra 88.2 5.7 0.0002 31.4 11.0 120 13-155 64-195 (219)
44 2ipx_A RRNA 2'-O-methyltransfe 88.1 3.9 0.00013 33.1 10.0 117 13-153 104-232 (233)
45 3bwc_A Spermidine synthase; SA 87.9 1.7 6E-05 37.4 8.1 130 11-154 119-259 (304)
46 1inl_A Spermidine synthase; be 87.7 6.3 0.00022 33.7 11.5 129 11-153 114-252 (296)
47 3m4x_A NOL1/NOP2/SUN family pr 87.7 0.62 2.1E-05 43.0 5.2 111 13-126 132-256 (456)
48 1wxx_A TT1595, hypothetical pr 87.6 0.65 2.2E-05 41.4 5.3 113 11-128 231-351 (382)
49 1yzh_A TRNA (guanine-N(7)-)-me 87.3 2.9 0.0001 33.4 8.7 105 13-132 67-181 (214)
50 2b3t_A Protein methyltransfera 87.3 0.8 2.7E-05 38.6 5.4 107 12-128 134-258 (276)
51 3tm4_A TRNA (guanine N2-)-meth 86.9 1.9 6.4E-05 38.3 7.8 100 13-130 243-349 (373)
52 3g5l_A Putative S-adenosylmeth 86.9 2.2 7.4E-05 35.0 7.8 73 4-91 62-136 (253)
53 1xtp_A LMAJ004091AAA; SGPP, st 86.8 2.8 9.5E-05 34.1 8.4 125 11-151 116-253 (254)
54 2pt6_A Spermidine synthase; tr 86.7 4 0.00014 35.5 9.7 129 11-154 140-278 (321)
55 2i62_A Nicotinamide N-methyltr 86.6 6 0.00021 32.2 10.4 134 11-154 79-262 (265)
56 3e05_A Precorrin-6Y C5,15-meth 86.4 7 0.00024 30.7 10.5 97 12-132 65-167 (204)
57 2ih2_A Modification methylase 86.3 1 3.5E-05 40.2 5.8 129 12-153 65-211 (421)
58 2frx_A Hypothetical protein YE 86.0 3.2 0.00011 38.4 9.1 57 13-71 144-205 (479)
59 1nv8_A HEMK protein; class I a 85.7 1.6 5.4E-05 37.3 6.5 55 12-68 147-207 (284)
60 2f8l_A Hypothetical protein LM 85.2 4 0.00014 35.6 9.0 128 12-144 160-297 (344)
61 3v97_A Ribosomal RNA large sub 85.1 0.7 2.4E-05 45.0 4.3 56 11-68 562-624 (703)
62 3m6w_A RRNA methylase; rRNA me 85.0 2.6 8.9E-05 38.9 7.9 112 13-127 128-253 (464)
63 3dlc_A Putative S-adenosyl-L-m 84.9 5 0.00017 31.5 8.9 106 12-132 67-202 (219)
64 2b9e_A NOL1/NOP2/SUN domain fa 84.3 0.86 3E-05 39.7 4.2 59 13-71 129-192 (309)
65 3eey_A Putative rRNA methylase 84.3 4.4 0.00015 31.7 8.2 49 13-63 49-103 (197)
66 3e23_A Uncharacterized protein 84.0 8.8 0.0003 30.2 10.0 104 13-131 67-180 (211)
67 1o54_A SAM-dependent O-methylt 83.8 3.7 0.00013 34.3 7.9 91 13-129 139-235 (277)
68 2ex4_A Adrenal gland protein A 83.6 8.3 0.00028 31.2 9.8 123 11-150 102-239 (241)
69 2as0_A Hypothetical protein PH 83.5 0.26 9.1E-06 44.2 0.5 111 11-127 240-360 (396)
70 3p9n_A Possible methyltransfer 83.4 0.71 2.4E-05 36.4 3.0 52 11-63 67-123 (189)
71 2yxl_A PH0851 protein, 450AA l 83.3 5.3 0.00018 36.4 9.3 59 13-72 286-349 (450)
72 3id6_C Fibrillarin-like rRNA/T 82.7 16 0.00055 30.2 11.3 121 13-153 103-231 (232)
73 3tma_A Methyltransferase; thum 82.5 2.2 7.6E-05 37.3 6.2 48 13-63 230-282 (354)
74 2i7c_A Spermidine synthase; tr 81.8 9 0.00031 32.4 9.6 126 11-153 102-239 (283)
75 1uwv_A 23S rRNA (uracil-5-)-me 81.5 7.5 0.00026 35.1 9.5 96 12-130 309-411 (433)
76 2fpo_A Methylase YHHF; structu 80.8 0.78 2.7E-05 36.9 2.4 50 11-62 77-131 (202)
77 3bxo_A N,N-dimethyltransferase 80.6 16 0.00054 29.1 10.4 44 13-60 64-107 (239)
78 3d2l_A SAM-dependent methyltra 80.6 17 0.00058 29.0 10.6 46 12-61 55-104 (243)
79 2ift_A Putative methylase HI07 80.4 0.96 3.3E-05 36.3 2.8 52 11-63 76-135 (201)
80 1l3i_A Precorrin-6Y methyltran 80.0 5.3 0.00018 30.5 7.0 97 12-132 56-159 (192)
81 3grz_A L11 mtase, ribosomal pr 80.0 1.1 3.8E-05 35.6 3.0 93 11-131 83-183 (205)
82 2pwy_A TRNA (adenine-N(1)-)-me 79.6 7.3 0.00025 31.7 8.1 91 13-128 123-219 (258)
83 2fca_A TRNA (guanine-N(7)-)-me 78.9 9.6 0.00033 30.5 8.5 108 13-131 64-177 (213)
84 4df3_A Fibrillarin-like rRNA/T 78.7 17 0.00059 30.1 10.1 120 13-151 104-230 (233)
85 3ldg_A Putative uncharacterize 78.5 4.4 0.00015 36.3 6.8 70 13-92 258-333 (384)
86 1g8a_A Fibrillarin-like PRE-rR 78.3 11 0.00039 30.0 8.8 117 13-152 100-226 (227)
87 3bkw_A MLL3908 protein, S-aden 78.2 19 0.00066 28.6 10.2 68 11-91 66-135 (243)
88 4dzr_A Protein-(glutamine-N5) 77.7 3.5 0.00012 32.4 5.3 129 13-154 56-206 (215)
89 3bt7_A TRNA (uracil-5-)-methyl 77.3 3.6 0.00012 36.4 5.8 96 11-130 235-348 (369)
90 3njr_A Precorrin-6Y methylase; 77.1 19 0.00064 28.6 9.7 93 13-131 79-178 (204)
91 3mb5_A SAM-dependent methyltra 77.0 5.7 0.00019 32.5 6.7 90 12-127 119-216 (255)
92 3ou2_A SAM-dependent methyltra 77.0 6.6 0.00023 30.9 6.9 105 13-132 70-204 (218)
93 3i9f_A Putative type 11 methyl 76.5 22 0.00074 26.7 10.9 115 13-155 41-162 (170)
94 2ar0_A M.ecoki, type I restric 76.4 15 0.0005 34.4 10.0 120 13-137 213-347 (541)
95 1yb2_A Hypothetical protein TA 75.9 16 0.00055 30.3 9.3 90 13-130 137-234 (275)
96 3hp7_A Hemolysin, putative; st 75.6 14 0.00048 31.8 8.9 127 4-148 103-246 (291)
97 1mjf_A Spermidine synthase; sp 74.8 31 0.001 28.9 10.9 126 10-153 97-239 (281)
98 3sm3_A SAM-dependent methyltra 74.7 22 0.00077 27.9 9.6 128 13-154 54-228 (235)
99 3fut_A Dimethyladenosine trans 74.6 1.9 6.5E-05 36.9 3.1 124 3-152 63-198 (271)
100 3adn_A Spermidine synthase; am 73.9 30 0.001 29.5 10.6 130 11-155 107-247 (294)
101 3bzb_A Uncharacterized protein 73.4 21 0.00071 29.9 9.5 108 11-130 102-234 (281)
102 3ujc_A Phosphoethanolamine N-m 73.3 14 0.00049 29.8 8.2 106 13-131 80-204 (266)
103 2esr_A Methyltransferase; stru 72.3 1.6 5.5E-05 33.6 1.9 51 11-63 54-110 (177)
104 2zfu_A Nucleomethylin, cerebra 72.3 31 0.001 27.0 9.8 106 13-155 88-193 (215)
105 1fbn_A MJ fibrillarin homologu 71.9 36 0.0012 27.2 11.1 120 12-154 99-229 (230)
106 1ws6_A Methyltransferase; stru 71.5 2.2 7.6E-05 32.3 2.5 53 11-64 64-121 (171)
107 3gru_A Dimethyladenosine trans 70.4 2.5 8.5E-05 36.6 2.9 48 13-63 74-124 (295)
108 3g89_A Ribosomal RNA small sub 70.0 14 0.00048 30.6 7.5 117 13-154 106-230 (249)
109 3mti_A RRNA methylase; SAM-dep 69.7 34 0.0012 26.0 9.8 51 13-65 46-101 (185)
110 4fsd_A Arsenic methyltransfera 69.4 21 0.00071 31.4 8.9 104 13-128 110-246 (383)
111 3k0b_A Predicted N6-adenine-sp 68.6 5 0.00017 36.0 4.6 70 13-92 265-340 (393)
112 2nxc_A L11 mtase, ribosomal pr 68.4 9.9 0.00034 31.4 6.2 99 4-131 138-242 (254)
113 1xxl_A YCGJ protein; structura 67.7 25 0.00087 28.2 8.5 102 13-129 45-170 (239)
114 1xdz_A Methyltransferase GIDB; 67.5 47 0.0016 26.7 10.9 118 13-155 96-221 (240)
115 2h1r_A Dimethyladenosine trans 67.5 4.8 0.00016 34.5 4.1 48 13-65 66-118 (299)
116 3l8d_A Methyltransferase; stru 67.4 26 0.0009 27.8 8.5 110 4-131 71-198 (242)
117 3tqs_A Ribosomal RNA small sub 65.6 6.3 0.00022 33.1 4.4 120 12-152 52-185 (255)
118 3ldu_A Putative methylase; str 65.1 4.2 0.00014 36.4 3.3 70 13-92 259-334 (385)
119 1vl5_A Unknown conserved prote 64.6 27 0.00093 28.3 8.2 102 13-129 61-186 (260)
120 3ccf_A Cyclopropane-fatty-acyl 64.1 35 0.0012 28.0 8.9 46 13-62 81-126 (279)
121 2ld4_A Anamorsin; methyltransf 63.8 40 0.0014 25.4 8.6 104 17-132 26-134 (176)
122 2h00_A Methyltransferase 10 do 63.6 7.8 0.00027 31.7 4.6 55 13-67 91-154 (254)
123 1zq9_A Probable dimethyladenos 62.8 5.6 0.00019 33.8 3.5 50 13-67 52-107 (285)
124 3kkz_A Uncharacterized protein 61.9 18 0.00062 29.6 6.6 102 11-130 69-193 (267)
125 2gb4_A Thiopurine S-methyltran 61.7 9 0.00031 31.9 4.6 132 3-150 85-250 (252)
126 2b2c_A Spermidine synthase; be 61.3 43 0.0015 28.8 9.1 127 11-154 132-270 (314)
127 2vdv_E TRNA (guanine-N(7)-)-me 60.8 18 0.00062 29.4 6.3 104 13-125 75-191 (246)
128 1sqg_A SUN protein, FMU protei 60.7 4.2 0.00014 36.8 2.5 59 13-72 272-334 (429)
129 2qfm_A Spermine synthase; sper 60.2 45 0.0015 29.6 9.1 129 12-154 212-362 (364)
130 1zx0_A Guanidinoacetate N-meth 60.2 36 0.0012 27.2 8.1 51 11-62 83-138 (236)
131 2okc_A Type I restriction enzy 60.1 40 0.0014 30.3 9.0 51 13-67 210-267 (445)
132 2fhp_A Methylase, putative; al 60.0 3.5 0.00012 31.7 1.7 52 11-62 67-125 (187)
133 2pxx_A Uncharacterized protein 59.7 7.8 0.00027 30.3 3.7 57 4-65 60-119 (215)
134 2jjq_A Uncharacterized RNA met 59.5 6.7 0.00023 35.6 3.7 47 12-63 313-363 (425)
135 3o4f_A Spermidine synthase; am 59.0 80 0.0027 27.1 10.3 128 11-155 107-247 (294)
136 4gek_A TRNA (CMO5U34)-methyltr 58.7 23 0.00078 29.5 6.7 120 13-155 98-259 (261)
137 3ocj_A Putative exported prote 57.9 63 0.0021 27.0 9.5 47 12-62 144-196 (305)
138 3jwg_A HEN1, methyltransferase 57.7 38 0.0013 26.5 7.7 47 12-61 54-110 (219)
139 3ftd_A Dimethyladenosine trans 57.5 13 0.00045 30.9 4.9 120 11-152 54-181 (249)
140 1ve3_A Hypothetical protein PH 56.2 13 0.00046 29.2 4.6 47 13-62 62-112 (227)
141 1qyr_A KSGA, high level kasuga 55.7 6.4 0.00022 33.0 2.7 50 14-63 46-100 (252)
142 2gpy_A O-methyltransferase; st 55.4 12 0.00042 30.0 4.3 53 12-64 79-137 (233)
143 2a14_A Indolethylamine N-methy 55.2 84 0.0029 25.6 12.0 21 10-30 77-97 (263)
144 3uzu_A Ribosomal RNA small sub 54.6 12 0.00041 31.8 4.3 49 14-62 71-123 (279)
145 3axs_A Probable N(2),N(2)-dime 54.4 8.2 0.00028 34.7 3.3 54 10-64 76-136 (392)
146 1uir_A Polyamine aminopropyltr 54.0 45 0.0015 28.4 8.0 128 11-154 101-243 (314)
147 3dxy_A TRNA (guanine-N(7)-)-me 53.9 10 0.00035 30.7 3.6 52 13-64 60-116 (218)
148 3pfg_A N-methyltransferase; N, 53.9 16 0.00054 29.8 4.8 45 13-61 74-118 (263)
149 3ntv_A MW1564 protein; rossman 53.7 18 0.00061 29.2 5.1 50 12-62 96-151 (232)
150 3tfw_A Putative O-methyltransf 53.6 18 0.0006 29.7 5.0 77 12-105 89-172 (248)
151 2g72_A Phenylethanolamine N-me 53.6 92 0.0031 25.6 9.7 44 112-155 235-281 (289)
152 1m6y_A S-adenosyl-methyltransf 52.1 16 0.00053 31.5 4.6 54 13-66 52-111 (301)
153 3ckk_A TRNA (guanine-N(7)-)-me 51.2 23 0.00079 28.9 5.4 104 12-124 71-185 (235)
154 1pjz_A Thiopurine S-methyltran 51.1 11 0.00036 30.0 3.2 128 4-149 40-200 (203)
155 1o9g_A RRNA methyltransferase; 50.7 16 0.00056 29.7 4.4 20 12-31 78-97 (250)
156 2gs9_A Hypothetical protein TT 50.6 19 0.00064 28.1 4.6 68 11-91 56-123 (211)
157 1qam_A ERMC' methyltransferase 50.1 19 0.00065 29.6 4.7 49 12-63 53-104 (244)
158 3hm2_A Precorrin-6Y C5,15-meth 49.4 77 0.0026 23.5 10.3 98 11-131 49-151 (178)
159 2o07_A Spermidine synthase; st 49.3 1.2E+02 0.0041 25.6 10.1 128 11-153 119-256 (304)
160 4htf_A S-adenosylmethionine-de 48.7 30 0.001 28.5 5.8 48 13-62 92-145 (285)
161 3dmg_A Probable ribosomal RNA 48.5 14 0.00047 32.9 3.8 49 13-64 257-309 (381)
162 3gjy_A Spermidine synthase; AP 48.2 49 0.0017 28.7 7.2 128 13-155 115-249 (317)
163 3v97_A Ribosomal RNA large sub 47.3 24 0.0008 34.2 5.5 73 13-92 258-336 (703)
164 2o57_A Putative sarcosine dime 46.0 72 0.0025 26.2 7.9 103 13-130 107-231 (297)
165 3u81_A Catechol O-methyltransf 45.7 42 0.0014 26.5 6.1 93 13-124 85-187 (221)
166 1zh8_A Oxidoreductase; TM0312, 44.2 1.1E+02 0.0038 26.1 8.9 56 2-62 36-91 (340)
167 1i9g_A Hypothetical protein RV 44.0 93 0.0032 25.3 8.2 90 13-127 126-224 (280)
168 2dul_A N(2),N(2)-dimethylguano 43.3 13 0.00046 33.0 2.9 50 13-64 73-142 (378)
169 2k4m_A TR8_protein, UPF0146 pr 43.1 6.8 0.00023 30.6 0.8 46 2-62 52-99 (153)
170 3iv6_A Putative Zn-dependent a 42.8 32 0.0011 28.9 5.1 74 4-90 63-139 (261)
171 2oo3_A Protein involved in cat 42.4 18 0.00061 31.1 3.4 98 11-125 113-218 (283)
172 4fzv_A Putative methyltransfer 41.6 14 0.00048 32.8 2.7 53 12-66 173-236 (359)
173 3vc1_A Geranyl diphosphate 2-C 40.0 95 0.0032 25.9 7.7 102 13-130 142-266 (312)
174 2p35_A Trans-aconitate 2-methy 40.0 31 0.0011 27.7 4.4 48 13-64 59-106 (259)
175 2r3s_A Uncharacterized protein 39.8 83 0.0028 26.4 7.4 103 13-130 191-320 (335)
176 3uwp_A Histone-lysine N-methyl 39.3 19 0.00063 33.0 3.1 79 11-106 197-292 (438)
177 2b25_A Hypothetical protein; s 39.0 77 0.0026 26.9 7.0 96 12-130 131-242 (336)
178 1nkv_A Hypothetical protein YJ 38.9 51 0.0018 26.3 5.6 100 13-130 61-184 (256)
179 1vlm_A SAM-dependent methyltra 38.7 1.4E+02 0.0047 23.2 12.8 99 15-130 69-185 (219)
180 3ofk_A Nodulation protein S; N 38.5 36 0.0012 26.5 4.5 47 12-62 74-123 (216)
181 3lkd_A Type I restriction-modi 38.4 2.4E+02 0.0084 26.1 11.9 54 11-64 248-308 (542)
182 3tr6_A O-methyltransferase; ce 38.2 27 0.00094 27.5 3.8 77 12-105 90-176 (225)
183 3gu3_A Methyltransferase; alph 37.5 66 0.0023 26.5 6.3 46 13-62 49-98 (284)
184 3e9m_A Oxidoreductase, GFO/IDH 37.3 1.5E+02 0.0052 25.0 8.7 55 2-62 22-76 (330)
185 2p7i_A Hypothetical protein; p 36.9 31 0.0011 27.2 3.9 45 13-61 66-111 (250)
186 3ll7_A Putative methyltransfer 36.5 15 0.0005 33.3 2.0 91 13-108 117-214 (410)
187 3m70_A Tellurite resistance pr 36.1 24 0.00082 29.1 3.2 54 4-64 138-195 (286)
188 3duw_A OMT, O-methyltransferas 35.7 54 0.0018 25.7 5.2 76 13-105 85-169 (223)
189 1p91_A Ribosomal RNA large sub 35.4 45 0.0015 27.1 4.8 46 13-61 111-156 (269)
190 2fgc_A Acetolactate synthase, 35.0 59 0.002 26.2 5.2 46 97-151 32-78 (193)
191 1dus_A MJ0882; hypothetical pr 34.2 34 0.0011 25.8 3.6 47 13-63 76-129 (194)
192 1kpg_A CFA synthase;, cyclopro 34.2 1.9E+02 0.0063 23.5 9.4 103 13-131 89-226 (287)
193 2avd_A Catechol-O-methyltransf 34.2 33 0.0011 27.1 3.7 76 12-105 95-181 (229)
194 4had_A Probable oxidoreductase 34.1 35 0.0012 29.2 4.0 55 3-63 42-96 (350)
195 2fk8_A Methoxy mycolic acid sy 34.0 1.9E+02 0.0064 23.9 8.7 44 13-62 115-164 (318)
196 3opn_A Putative hemolysin; str 33.9 1.8E+02 0.0063 23.3 8.7 133 4-155 55-204 (232)
197 3u3x_A Oxidoreductase; structu 33.9 53 0.0018 28.5 5.2 48 10-62 50-97 (361)
198 3bus_A REBM, methyltransferase 33.8 1.8E+02 0.0062 23.2 8.7 102 13-131 86-214 (273)
199 3ohs_X Trans-1,2-dihydrobenzen 33.6 2.1E+02 0.0073 24.0 9.3 56 2-62 19-75 (334)
200 1x19_A CRTF-related protein; m 32.0 1.5E+02 0.0053 25.2 7.9 102 13-130 216-345 (359)
201 3g5t_A Trans-aconitate 3-methy 32.0 48 0.0016 27.5 4.4 70 11-91 61-140 (299)
202 4dcm_A Ribosomal RNA large sub 31.9 22 0.00075 31.4 2.4 49 12-64 247-303 (375)
203 2yvl_A TRMI protein, hypotheti 31.2 43 0.0015 26.7 3.9 86 13-123 115-206 (248)
204 3c6k_A Spermine synthase; sper 30.3 2.2E+02 0.0076 25.3 8.7 133 12-154 229-379 (381)
205 2p8j_A S-adenosylmethionine-de 30.0 65 0.0022 24.7 4.7 47 13-62 48-98 (209)
206 3dr5_A Putative O-methyltransf 29.4 28 0.00095 28.1 2.4 75 13-105 83-165 (221)
207 3hem_A Cyclopropane-fatty-acyl 29.1 1.6E+02 0.0054 24.2 7.3 44 13-62 97-146 (302)
208 3cc8_A Putative methyltransfer 29.1 1.9E+02 0.0066 22.0 7.7 48 12-62 55-102 (230)
209 1ej0_A FTSJ; methyltransferase 29.1 1.6E+02 0.0055 21.2 6.7 48 13-66 49-101 (180)
210 4gqb_A Protein arginine N-meth 29.0 50 0.0017 31.6 4.4 51 3-59 378-434 (637)
211 3ege_A Putative methyltransfer 28.5 63 0.0022 26.2 4.5 99 13-129 58-174 (261)
212 2p2s_A Putative oxidoreductase 27.5 36 0.0012 29.1 2.9 48 10-62 28-75 (336)
213 3lbf_A Protein-L-isoaspartate 27.4 61 0.0021 25.0 4.1 48 13-63 101-153 (210)
214 3kr9_A SAM-dependent methyltra 27.4 2.5E+02 0.0085 22.8 8.3 94 11-131 39-141 (225)
215 2yqz_A Hypothetical protein TT 27.2 57 0.0019 26.1 4.0 47 13-62 63-113 (263)
216 2xyq_A Putative 2'-O-methyl tr 27.0 1.8E+02 0.0062 24.5 7.3 94 13-127 94-191 (290)
217 4hkt_A Inositol 2-dehydrogenas 26.9 2.8E+02 0.0095 23.2 9.5 53 2-62 20-72 (331)
218 2avn_A Ubiquinone/menaquinone 26.8 75 0.0026 25.6 4.7 66 13-91 78-143 (260)
219 3jwh_A HEN1; methyltransferase 26.8 59 0.002 25.4 3.9 48 12-62 54-111 (217)
220 1vbf_A 231AA long hypothetical 26.5 43 0.0015 26.4 3.1 50 12-64 93-145 (231)
221 2oyr_A UPF0341 protein YHIQ; a 26.4 21 0.00071 30.0 1.1 50 11-63 111-174 (258)
222 1xj5_A Spermidine synthase 1; 26.2 48 0.0016 28.8 3.5 51 11-62 144-203 (334)
223 1i1n_A Protein-L-isoaspartate 26.0 64 0.0022 25.3 4.0 48 13-63 104-161 (226)
224 2r6z_A UPF0341 protein in RSP 25.5 37 0.0013 28.2 2.6 51 13-64 107-172 (258)
225 4h3v_A Oxidoreductase domain p 25.0 65 0.0022 27.6 4.1 48 10-62 37-84 (390)
226 3euw_A MYO-inositol dehydrogen 24.6 96 0.0033 26.4 5.2 54 2-62 21-74 (344)
227 3khk_A Type I restriction-modi 24.5 4.2E+02 0.014 24.4 10.8 51 12-64 284-340 (544)
228 3q7e_A Protein arginine N-meth 24.2 70 0.0024 27.6 4.2 48 11-62 89-142 (349)
229 2fyt_A Protein arginine N-meth 23.9 51 0.0017 28.4 3.2 47 11-61 87-139 (340)
230 2pbf_A Protein-L-isoaspartate 23.2 64 0.0022 25.3 3.5 52 13-64 111-173 (227)
231 2glx_A 1,5-anhydro-D-fructose 23.1 3.2E+02 0.011 22.6 9.7 56 2-64 18-73 (332)
232 3mz0_A Inositol 2-dehydrogenas 23.0 1.1E+02 0.0038 26.0 5.2 56 2-62 19-75 (344)
233 2ho3_A Oxidoreductase, GFO/IDH 22.9 3.3E+02 0.011 22.6 8.9 56 2-64 18-73 (325)
234 3m2t_A Probable dehydrogenase; 22.9 53 0.0018 28.4 3.2 55 2-62 23-77 (359)
235 1lss_A TRK system potassium up 22.8 1.5E+02 0.0051 20.8 5.3 55 2-62 21-78 (140)
236 4hc4_A Protein arginine N-meth 22.5 87 0.003 27.7 4.5 46 10-59 105-155 (376)
237 2kw5_A SLR1183 protein; struct 22.4 2.5E+02 0.0086 21.1 11.3 124 13-155 53-195 (202)
238 4fb5_A Probable oxidoreductase 22.3 47 0.0016 28.6 2.6 48 10-62 56-103 (393)
239 5nul_A Flavodoxin; electron tr 22.3 2.2E+02 0.0074 20.3 6.8 79 38-128 32-111 (138)
240 3dli_A Methyltransferase; PSI- 21.8 2.9E+02 0.0098 21.6 9.0 109 4-130 59-181 (240)
241 3f4k_A Putative methyltransfer 21.3 39 0.0013 27.1 1.8 99 13-129 71-192 (257)
242 2xvm_A Tellurite resistance pr 21.2 57 0.002 24.7 2.7 46 13-62 56-106 (199)
243 4azs_A Methyltransferase WBDD; 21.1 71 0.0024 29.7 3.8 56 1-60 81-141 (569)
244 1r18_A Protein-L-isoaspartate( 21.0 81 0.0028 24.9 3.7 49 13-64 116-174 (227)
245 4gqa_A NAD binding oxidoreduct 21.0 66 0.0022 28.3 3.4 50 10-64 58-107 (412)
246 3q2i_A Dehydrogenase; rossmann 20.5 92 0.0031 26.7 4.2 55 2-62 30-84 (354)
247 3gnl_A Uncharacterized protein 20.4 3.6E+02 0.012 22.1 9.4 95 11-131 45-147 (244)
248 2ixa_A Alpha-N-acetylgalactosa 20.3 4.4E+02 0.015 23.2 9.5 110 3-121 38-165 (444)
249 3llv_A Exopolyphosphatase-rela 20.2 1.1E+02 0.0039 21.9 4.2 57 1-62 22-79 (141)
250 3fwz_A Inner membrane protein 20.0 1.2E+02 0.0042 22.0 4.3 55 1-62 23-80 (140)
No 1
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=100.00 E-value=3.3e-57 Score=409.11 Aligned_cols=229 Identities=45% Similarity=0.720 Sum_probs=209.5
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
.||+++|+++++|+|+|+|+.|++||++|||+..++++||+++++++++..++|+|+||||||+||.+|++++.+|+|+.
T Consensus 18 ~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~ 97 (333)
T 4h0n_A 18 CAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFTRNGKYLDDNDPRTN 97 (333)
T ss_dssp HHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSEETTEECCTTCTTSC
T ss_pred HHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchhhhhhccCCcCcccc
Confidence 58999998889999999999999999999999888899999999998886679999999999999999999999999999
Q ss_pred HHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCCCCCCCC
Q psy3543 82 ALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEA 161 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~~~~~~~ 161 (250)
||++++++|+++++|++|+||||+|+++++.++.+++.|+++||.+.+.+|||.+||+||+|+|+|+||++++.
T Consensus 98 L~~~~~r~i~~~~~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~------ 171 (333)
T 4h0n_A 98 SFLYLIGILDQLDNVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNL------ 171 (333)
T ss_dssp CHHHHHHHGGGCTTCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTS------
T ss_pred cHHHHHHHHHHhcCCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCC------
Confidence 99999999999844999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcccCchhhhhhcCCccccCcCCCCCcccchhhhccCCCCCCCcccccccCHHHHHhccccceeecCCCCcceeeccCCc
Q psy3543 162 SFCFETSSELMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYT 241 (250)
Q Consensus 162 ~f~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~d~Le~~~~~~~~~~~y~~~~~~~~~~~~~~div~p~~~~~~cftk~y~ 241 (250)
.|.|+....++..+|++... .. +|+|+||++.+ ++|+++++.+ ++...+|+++|.+.+++||||||+
T Consensus 172 ~~~f~~~~~~~~~~P~~~~~-----~~--~l~d~Le~~~~-----~~y~~~~~~~-~~~~~~d~~~~~~~~~~~~~k~~~ 238 (333)
T 4h0n_A 172 TWPFKRRDEIITRLPKDFGV-----PH--SLESIIEEDVD-----EKFLVPEKML-RCAKVFDICYKTSKRSCCFTKAYT 238 (333)
T ss_dssp CCCSCCCSSCBSSCSSCCCS-----CC--CSSTTCCSSCC-----GGGBCCHHHH-TTGGGCCEECTTCSCCCCCCTTBT
T ss_pred CCCCCcccchhhhCCCCccc-----cc--cHHHHhccCCc-----ccccCCHHHH-HHHHHhccCChhhhhhhhhccccc
Confidence 67776555555567765432 23 89999998754 8999999999 888999999999999999999999
Q ss_pred ceeecccc
Q psy3543 242 HYAEGKID 249 (250)
Q Consensus 242 ~~~~g~gs 249 (250)
+|++|+||
T Consensus 239 ~~~~g~gs 246 (333)
T 4h0n_A 239 HYADGTGS 246 (333)
T ss_dssp TBSSSSCC
T ss_pred eEEeccCc
Confidence 99999997
No 2
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=100.00 E-value=2.1e-55 Score=396.42 Aligned_cols=219 Identities=30% Similarity=0.517 Sum_probs=199.2
Q ss_pred hHHhhcCCCcEEE-EEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchh--hhcCCCCCCCCc
Q psy3543 2 ERLSNHAFSLEVV-TAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPF--TRTGLQKDIADA 78 (250)
Q Consensus 2 egL~~~g~~~~~v-~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~f--S~ag~~~~~~d~ 78 (250)
.||+++|++++++ +|+|+|+.|++||++|||+. ++++||+++++++++..++|+|+||||||+| |.+|++++.+|+
T Consensus 25 ~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~fs~S~ag~~~~~~d~ 103 (327)
T 3qv2_A 25 SSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQPYNNSIMSKHKDINDP 103 (327)
T ss_dssp HHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCTTCSHHHHTTTCTTTCG
T ss_pred HHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCccCcccccCCCCCCCccc
Confidence 5899999888999 99999999999999999988 5799999999999886679999999999999 999999999999
Q ss_pred hhhHHHHHHH-Hcccc--CCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 79 RCTALSYLIE-TIPAI--PSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 79 r~~l~~~~~~-ii~~~--~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
|+.||+++++ +|+++ + |++|+||||+|+++++.++.+++.|+++||.+.+.+|||.+||+||+|+|+|+||++++.
T Consensus 104 r~~L~~~~~r~~i~~~~~~-P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~f 182 (327)
T 3qv2_A 104 RAKSVLHLYRDILPYLINK-PKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTPF 182 (327)
T ss_dssp GGHHHHHHHHTTGGGCSSC-CSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSCC
T ss_pred cchhHHHHHHHHHHHhccC-CCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCCC
Confidence 9999999999 99999 7 999999999999999999999999999999999999999999999999999999999873
Q ss_pred CCCCCCCcccCchhhhhhcCCccccCcCCCCCcccchhhhccCCCCCCCcccccccCHHHHHhccccceeecCCCCccee
Q psy3543 156 AHSSEASFCFETSSELMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNC 235 (250)
Q Consensus 156 ~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~d~Le~~~~~~~~~~~y~~~~~~~~~~~~~~div~p~~~~~~c 235 (250)
.|| ++... .... +|+|+||++. +++|+++++.|.+++..+||++|++++++|
T Consensus 183 --------~fP----------~~~~~---~~~~--~l~d~Le~~~-----~~~y~l~~~~~~~~~~~~di~~~~~~~~~~ 234 (327)
T 3qv2_A 183 --------KNE----------IQLHQ---EKES--MISNYLDNNV-----NESYSIPSDLILKKGMLFDIVGKDDKRTCC 234 (327)
T ss_dssp --------CSC----------CCCCC---CSCC--CGGGGCCSSC-----CGGGBCCHHHHHHHGGGSCEEETTSSCBCC
T ss_pred --------CCC----------Ccccc---cccc--cHHHHhcccc-----cccccCCHHHHHhhhccccccccccccccc
Confidence 332 22111 0123 7999999766 489999999999999999999999999999
Q ss_pred eccCCcceeeccccC
Q psy3543 236 FTKAYTHYAEGKIDY 250 (250)
Q Consensus 236 ftk~y~~~~~g~gs~ 250 (250)
|||+|++|++||||+
T Consensus 235 ~t~~y~~y~~~~gs~ 249 (327)
T 3qv2_A 235 FTKSYTKIVEGTGSI 249 (327)
T ss_dssp CCTTTTTSSTTSCCE
T ss_pred ccccceEEecCCCce
Confidence 999999999999984
No 3
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=100.00 E-value=1.7e-49 Score=360.13 Aligned_cols=236 Identities=42% Similarity=0.727 Sum_probs=182.3
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
.||+++|+.+++|+++|+|+.|+++|++||++..++++||++++.++++..++|+|++|||||+||.+|++++.+|+|+.
T Consensus 17 ~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS~ag~~~g~~d~r~~ 96 (343)
T 1g55_A 17 HALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTN 96 (343)
T ss_dssp HHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC------------------C
T ss_pred HHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchhhcCCcCCccCccch
Confidence 47889998899999999999999999999999877899999998877764468999999999999999999999999999
Q ss_pred HHHHHHHHccccC-CCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCCCCCCC
Q psy3543 82 ALSYLIETIPAIP-SLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSE 160 (250)
Q Consensus 82 l~~~~~~ii~~~~-~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~~~~~~ 160 (250)
||++++++|++++ +|++|+||||+|++++.+++.+++.|+++||.+.+.+|||.+||+||+|+|+|+||++++.
T Consensus 97 l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~----- 171 (343)
T 1g55_A 97 SFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSE----- 171 (343)
T ss_dssp HHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEEEECGGGGTCSCCCCEEEEEEEESSS-----
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCCeeEEEEEEHHHCCCCCcccEEEEEEEeCCC-----
Confidence 9999999999874 3999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCcccCchhhhhhcCCcccc-CcC----CCCCcccchhhhccCCCCCCCcccccccCHHHHHhccccceeecCCCCccee
Q psy3543 161 ASFCFETSSELMTELPKLKA-NTC----NPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNC 235 (250)
Q Consensus 161 ~~f~~~~~~~~~~~~p~~~~-~~~----~~~~~~~~l~d~Le~~~~~~~~~~~y~~~~~~~~~~~~~~div~p~~~~~~c 235 (250)
.|.||.+...+..+|...+ +.. ..... ++.|+|+.+.+ ..+|+++++.++++...+|++.|.++++.|
T Consensus 172 -~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (343)
T 1g55_A 172 -PLPFQAPGQVLMEFPKIEIHRKNQQDSDLSVK--MLKDFLEDDTD----VNQYLLPPKSLLRYALLLDIVQPTCRRSVC 244 (343)
T ss_dssp -CCTTCCTTCEESSCCC------------CCCC--CGGGGCCTTCC----HHHHBCCHHHHHHHGGGCCEECTTCSCCCC
T ss_pred -CCCCCCCcchhhhCCHhHhcCccCcccccccc--cHHHHhccCcc----hhhccCCHHHHHHHHHHhCCCCccccccch
Confidence 4555543322222332110 000 00112 68999986553 367899999999988889999999999999
Q ss_pred eccCCcceeecccc
Q psy3543 236 FTKAYTHYAEGKID 249 (250)
Q Consensus 236 ftk~y~~~~~g~gs 249 (250)
++|+|++|++|+||
T Consensus 245 ~~~~~~~~~~g~~~ 258 (343)
T 1g55_A 245 FTKGYGSYIEGTGS 258 (343)
T ss_dssp CCTTTTTCCTTSCC
T ss_pred hhccceeeeccccc
Confidence 99999999999986
No 4
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=100.00 E-value=2.6e-44 Score=323.04 Aligned_cols=148 Identities=23% Similarity=0.355 Sum_probs=141.1
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
.||+++| |++++|+|+|+.|++||++|||.. ++.+||++++.++++ ++|+|+||||||+||.+|++++.+|+|+.
T Consensus 15 ~G~~~aG--~~~v~a~e~d~~a~~ty~~N~~~~-~~~~DI~~i~~~~~~--~~D~l~ggpPCQ~fS~ag~~~g~~d~R~~ 89 (331)
T 3ubt_Y 15 LGFQKAG--FRIICANEYDKSIWKTYESNHSAK-LIKGDISKISSDEFP--KCDGIIGGPPSQSWSEGGSLRGIDDPRGK 89 (331)
T ss_dssp HHHHHTT--CEEEEEEECCTTTHHHHHHHCCSE-EEESCGGGCCGGGSC--CCSEEECCCCGGGTEETTEECCTTCGGGH
T ss_pred HHHHHCC--CEEEEEEeCCHHHHHHHHHHCCCC-cccCChhhCCHhhCC--cccEEEecCCCCCcCCCCCccCCCCchhH
Confidence 5899998 899999999999999999999975 578999999999998 79999999999999999999999999999
Q ss_pred HHHHHHHHccccCCCcEEEEccccCCCc---chHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 82 ALSYLIETIPAIPSLQCLLLENVKGFEG---SRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~i~~ENV~~~~~---~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
||++++++|++++ |++|+||||+|+++ ++.++.+++.|+++||++.+.+|||++||+||+|+|+|+||++++.
T Consensus 90 L~~~~~r~i~~~~-Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~ 165 (331)
T 3ubt_Y 90 LFYEYIRILKQKK-PIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKEL 165 (331)
T ss_dssp HHHHHHHHHHHHC-CSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGG
T ss_pred HHHHHHHHHhccC-CeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCCC
Confidence 9999999999999 99999999999986 4689999999999999999999999999999999999999999876
No 5
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=100.00 E-value=5.3e-43 Score=329.27 Aligned_cols=220 Identities=23% Similarity=0.361 Sum_probs=169.9
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhC---CCCCccccCccccccc----------------cccCCCCcEEEeCCC
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIE----------------EINAMSPDVILMSPP 62 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~---~~~~~~~~dI~~~~~~----------------~~~~~~~Dll~~gpP 62 (250)
.||+++| +++|+|+|+|+.|++||++|| |+..++++||.+++.. .++ ++|||+||||
T Consensus 103 lG~~~aG--~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~~~~--~~Dvl~gGpP 178 (482)
T 3me5_A 103 RGFESIG--GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHIP--EHDVLLAGFP 178 (482)
T ss_dssp HHHHTTT--EEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHHHSC--CCSEEEEECC
T ss_pred HHHHHCC--CEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhhcCC--CCCEEEecCC
Confidence 5888887 899999999999999999999 6666778999998743 233 7899999999
Q ss_pred CchhhhcCCCC--------CC-CCchhhHHHHHHHHccccCCCcEEEEccccCCCc---chHHHHHHHHHHhCCCeEE--
Q psy3543 63 CQPFTRTGLQK--------DI-ADARCTALSYLIETIPAIPSLQCLLLENVKGFEG---SRSRDLITSMLTRAGFRFQ-- 128 (250)
Q Consensus 63 CQ~fS~ag~~~--------~~-~d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~---~~~~~~i~~~L~~~GY~v~-- 128 (250)
||+||.+|+++ |+ .|+|+.||++++++|+..+ |++|+||||+|+++ ++.|+.+++.|+++||.+.
T Consensus 179 CQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~r-Pk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~ 257 (482)
T 3me5_A 179 CQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARR-PAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADA 257 (482)
T ss_dssp CCCC------------------CTTTTSHHHHHHHHHHHHC-CSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTT
T ss_pred CcchhhhCcccccccccccccccCccccHHHHHHHHHHHcC-CcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEec
Confidence 99999999654 33 3789999999999999999 99999999999987 4689999999999999996
Q ss_pred -------EEEEccCCCCccccCceEEEEEEeCCCCCCCCCCcccCchhhhhhcCCccccCcCCCCCcccchhhhccCCCC
Q psy3543 129 -------EFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANTCNPLLSRMTLHGILDSTHP 201 (250)
Q Consensus 129 -------~~il~a~~~GvPq~R~R~~lva~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~d~Le~~~~ 201 (250)
+.+|||.+| +||+|+|+||||++++.. ....|.++. +...+|.. +.+|+|+|++..+
T Consensus 258 ~~~g~~~~~vlnA~~~-vPQ~R~R~fivg~r~~~~--~~~~F~~~~---~~~~~p~~----------~~~l~diLe~~~~ 321 (482)
T 3me5_A 258 EDNGPDDPKIIDGKHF-LPQHRERIVLVGFRRDLN--LKADFTLRD---ISECFPAQ----------RVTLAQLLDPMVE 321 (482)
T ss_dssp TCCSTTCTTEEEGGGT-SSBCCEEEEEEEEEGGGC--CCTTCCGGG---GGGGSCSS----------CCCTGGGSCSSCC
T ss_pred cccCcccceeeecccc-CCccceEEEEEEEecCcc--cccCcCccc---cccccCCC----------cccHHHHhhcccc
Confidence 579999999 999999999999999861 012455443 22234431 2279999998875
Q ss_pred CCCcccccccCHHHHHh------------ccccceeecCCCCcceeeccCCcceeecc
Q psy3543 202 SGDLYRRYLVSDKDLLR------------RFHVFDIVNGKASSTNCFTKAYTHYAEGK 247 (250)
Q Consensus 202 ~~~~~~~y~~~~~~~~~------------~~~~~div~p~~~~~~cftk~y~~~~~g~ 247 (250)
++|+++++.|+. .|+.++++.|++.++.|+|.++..+..|+
T Consensus 322 -----~ky~l~~~~~~~l~~~~~~~~~~g~gf~~~i~~~~~~~~~~~Ti~a~~~k~gs 374 (482)
T 3me5_A 322 -----AKYILTPVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGA 374 (482)
T ss_dssp -----GGGBCCHHHHHHHHHHHHC----------CEECTTSGGGGTCCBCCC---CCS
T ss_pred -----cccccCHHHHHHHHHHHHhhhcccCCcccceecCCcccccceeeEEeeeccCc
Confidence 899999987741 35567999999999999998877766654
No 6
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=100.00 E-value=1.8e-41 Score=305.57 Aligned_cols=147 Identities=24% Similarity=0.430 Sum_probs=138.9
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
.||+++| +++++++|+|+.|+++|++|||+.. ++||.+++.++++ ++|+|++|||||+||.+|++++.+|+|+.
T Consensus 26 ~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~--~~D~l~~gpPCQ~fS~ag~~~g~~d~r~~ 99 (327)
T 2c7p_A 26 LALESCG--AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIP--DHDILCAGFPCQAFSISGKQKGFEDSRGT 99 (327)
T ss_dssp HHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSC--CCSEEEEECCCTTTCTTSCCCGGGSTTSC
T ss_pred HHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCC--CCCEEEECCCCCCcchhcccCCCcchhhH
Confidence 4788887 8999999999999999999999874 7999999998887 79999999999999999999999999999
Q ss_pred HHHHHHHHccccCCCcEEEEccccCCCcc---hHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 82 ALSYLIETIPAIPSLQCLLLENVKGFEGS---RSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~i~~ENV~~~~~~---~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
||++++++|++++ |++|+||||+|+++. ..++.+++.|+++||.+.+.+|||++||+||+|+|+|+||++++.
T Consensus 100 L~~~~~r~i~~~~-P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~ 175 (327)
T 2c7p_A 100 LFFDIARIVREKK-PKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDL 175 (327)
T ss_dssp HHHHHHHHHHHHC-CSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGG
T ss_pred HHHHHHHHHHhcc-CcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCCC
Confidence 9999999999999 999999999999873 589999999999999999999999999999999999999999875
No 7
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=100.00 E-value=3.2e-41 Score=311.18 Aligned_cols=151 Identities=22% Similarity=0.276 Sum_probs=137.1
Q ss_pred hHHhhcCCCcEE----EEEEeCcHHHHHHHHHhCCCCCc-----------------------------------------
Q psy3543 2 ERLSNHAFSLEV----VTAIDINTSANSVYKHNFPRTNL----------------------------------------- 36 (250)
Q Consensus 2 egL~~~g~~~~~----v~a~did~~a~~~y~~N~~~~~~----------------------------------------- 36 (250)
.||+++|+.+++ |+|+|+|+.|+.+|++||+....
T Consensus 25 ~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~i~~l~~~~l~~i~~~~ 104 (403)
T 4dkj_A 25 KALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYGIKKINNTIKASYLNYA 104 (403)
T ss_dssp HHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccccccccHHHHHHHHhhc
Confidence 588998865555 99999999999999999986410
Q ss_pred -----cccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCC---chhhHHHHHHHHccc--------cCCCcEEE
Q psy3543 37 -----RGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIAD---ARCTALSYLIETIPA--------IPSLQCLL 100 (250)
Q Consensus 37 -----~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d---~r~~l~~~~~~ii~~--------~~~P~~i~ 100 (250)
..+||+++++.+++. .+|||+||||||+||.+|+++|.+| +|+.||+++++++++ .+ |++|+
T Consensus 105 ~~~~~~~~DI~~i~~~~ip~-~vDll~ggpPCQ~fS~ag~~~g~~d~~~~r~~L~~~~~rii~~~~~k~~~~~~-Pk~~l 182 (403)
T 4dkj_A 105 KKHFNNLFDIKKVNKDNFPK-NIDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWEIERILEEIKNSFSKEEM-PKYLL 182 (403)
T ss_dssp HHHSCBCCCGGGCCTTTSCS-SCSEEEECCCCTTTCTTSCCCCCCGGGCCSGGGHHHHHHHHHHHHHHSCGGGS-CSEEE
T ss_pred ccCCCcccchhhcCHhhCCC-CCcEEEEeCCCCCHHHhCCCCCCCccccccchhHHHHHHHHHHhhhhhccccC-CCEEE
Confidence 248999999999985 5899999999999999999999887 899999999999998 78 99999
Q ss_pred EccccCCCcc---hHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCC
Q psy3543 101 LENVKGFEGS---RSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 154 (250)
Q Consensus 101 ~ENV~~~~~~---~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~ 154 (250)
||||+|++++ ..++.+++.|+++||.+.+.+|||.+||+||+|+|+|+||++++
T Consensus 183 ~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~ 239 (403)
T 4dkj_A 183 MENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDD 239 (403)
T ss_dssp EEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHH
T ss_pred EecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCC
Confidence 9999999974 47899999999999999999999999999999999999999987
No 8
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=100.00 E-value=1.3e-40 Score=305.12 Aligned_cols=173 Identities=23% Similarity=0.352 Sum_probs=145.8
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccc-----cCCCCcEEEeCCCCchhhhcCCCCCCC
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEI-----NAMSPDVILMSPPCQPFTRTGLQKDIA 76 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~-----~~~~~Dll~~gpPCQ~fS~ag~~~~~~ 76 (250)
.||+++| +++++|+|+|+.|++||++|||++.++++||++++.+++ ...++|+|++|||||+||.+|++ +.+
T Consensus 17 lG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ~fS~ag~~-~~~ 93 (376)
T 3g7u_A 17 LGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQGFSSIGKG-NPD 93 (376)
T ss_dssp HHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCCTTC--------C
T ss_pred HHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCCCcccccCC-CCC
Confidence 5788888 999999999999999999999998888999999988776 23489999999999999999987 789
Q ss_pred CchhhHHHHHHHHccccCCCcEEEEccccCCCcc---hHHHHHHHHHHhCCCeE-EEEEEccCCCCccccCceEEEEEEe
Q psy3543 77 DARCTALSYLIETIPAIPSLQCLLLENVKGFEGS---RSRDLITSMLTRAGFRF-QEFLLSPTQFGVPNSRTRYYLIAKR 152 (250)
Q Consensus 77 d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~---~~~~~i~~~L~~~GY~v-~~~il~a~~~GvPq~R~R~~lva~~ 152 (250)
|+|+.||++++++|++++ |++|+||||+|+++. ..++.++ .|+++||++ .+.+|||.+||+||+|+|+|+||++
T Consensus 94 d~r~~L~~~~~~~v~~~~-P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v~~~~vl~a~dyGvPQ~R~R~~iig~r 171 (376)
T 3g7u_A 94 DSRNQLYMHFYRLVSELQ-PLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDILDPIKVKASDYGAPTIRTRYFFIGVK 171 (376)
T ss_dssp HHHHHHHHHHHHHHHHHC-CSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEECCCEEEEGGGGTCSBCCEEEEEEEEE
T ss_pred CchHHHHHHHHHHHHHhC-CCEEEEecchHhhccCcHHHHHHHH-HHHcCCCccCcEEEEEHhhCCCCCCCcEEEEEEEe
Confidence 999999999999999999 999999999999974 4788899 999999999 9999999999999999999999999
Q ss_pred CCCCCCC--CCC-----cccCchhhhhhcCCcccc
Q psy3543 153 SPAAHSS--EAS-----FCFETSSELMTELPKLKA 180 (250)
Q Consensus 153 ~~~~~~~--~~~-----f~~~~~~~~~~~~p~~~~ 180 (250)
++.. ++ .+. ....+++++|+++|.+..
T Consensus 172 ~~~~-~~~~~p~~~~~~~~~~tv~dai~dlp~~~~ 205 (376)
T 3g7u_A 172 KSLK-LDISDEVFMPKMIDPVTVKDALYGLPDIID 205 (376)
T ss_dssp GGGC-CCCCGGGTSCCSCCCCCHHHHTTTCCSSCE
T ss_pred CCCC-CCccccccccccCCCCcHHHHHhcCCcccc
Confidence 9862 11 111 124577888888887643
No 9
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=100.00 E-value=1.8e-38 Score=314.84 Aligned_cols=153 Identities=22% Similarity=0.290 Sum_probs=136.1
Q ss_pred hHHhhcC----CCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccc----------------------------
Q psy3543 2 ERLSNHA----FSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEI---------------------------- 49 (250)
Q Consensus 2 egL~~~g----~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~---------------------------- 49 (250)
+||+++| .+|++++|+|+|+.|++||++|||++.+++.||.++....+
T Consensus 227 ~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp~~~~~~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (784)
T 4ft4_B 227 TGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHPQTEVRNEKADEFLALLKEWAVLCKKYVQDVDSNLASSEDQADEDS 306 (784)
T ss_dssp HHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCTTSEEEESCHHHHHHHHHHHHHHHHHTC------------------
T ss_pred HHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCCCCceecCcHHHhhhhhhhccccccccccccccccccccccccccc
Confidence 5788876 34899999999999999999999999888899876632110
Q ss_pred --------------------------------------------------------------------c-CCCCcEEEeC
Q psy3543 50 --------------------------------------------------------------------N-AMSPDVILMS 60 (250)
Q Consensus 50 --------------------------------------------------------------------~-~~~~Dll~~g 60 (250)
+ ..++|||+||
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~VDvl~GG 386 (784)
T 4ft4_B 307 PLDKDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREFVQEGHKRKILPLPGDVDVICGG 386 (784)
T ss_dssp -----CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHHHHHHHHHTSSCCTTSCSEEEEC
T ss_pred ccccccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhccccccccchhhccCCCCCeEEEEec
Confidence 0 0268999999
Q ss_pred CCCchhhhcCCCCC----CCCchhhHHHHHHHHccccCCCcEEEEccccCCCc---chHHHHHHHHHHhCCCeEEEEEEc
Q psy3543 61 PPCQPFTRTGLQKD----IADARCTALSYLIETIPAIPSLQCLLLENVKGFEG---SRSRDLITSMLTRAGFRFQEFLLS 133 (250)
Q Consensus 61 pPCQ~fS~ag~~~~----~~d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~---~~~~~~i~~~L~~~GY~v~~~il~ 133 (250)
||||+||.+|++++ .+|+|+.||++++++|++++ |++|+||||+||++ +..++.+++.|.++||++.+.+||
T Consensus 387 pPCQ~FS~aG~~kg~~~~~~D~R~~L~~~~~riv~~~r-Pk~fvlENV~glls~~~g~~~~~il~~l~~lGY~v~~~vLn 465 (784)
T 4ft4_B 387 PPCQGISGFNRYRNRDEPLKDEKNKQMVTFMDIVAYLK-PKYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMV 465 (784)
T ss_dssp CCCCSSSGGGGGSCTTSTTTSTTCHHHHHHHHHHHHHC-CSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcchhhhhcccCcCccccCchhHHHHHHHHHHHHHC-CCEEEEEecCCccccccchHHHHHHHHHHhCCCeeeeeecC
Confidence 99999999998765 67899999999999999999 99999999999987 468999999999999999999999
Q ss_pred cCCCCccccCceEEEEEEeCCC
Q psy3543 134 PTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 134 a~~~GvPq~R~R~~lva~~~~~ 155 (250)
|.+||+||+|+|+||||++++.
T Consensus 466 A~dyGVPQ~R~Rvfivg~r~d~ 487 (784)
T 4ft4_B 466 AGCYGLPQFRMRVFLWGALSSM 487 (784)
T ss_dssp GGGGTCSSCCEEEEEEEECTTS
T ss_pred HHHcCCCcccccceeeeeccCC
Confidence 9999999999999999999986
No 10
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=100.00 E-value=1.8e-36 Score=304.09 Aligned_cols=152 Identities=18% Similarity=0.272 Sum_probs=134.4
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccc------------ccccc-CCCCcEEEeCCCCchhhh
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFS------------IEEIN-AMSPDVILMSPPCQPFTR 68 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~------------~~~~~-~~~~Dll~~gpPCQ~fS~ 68 (250)
.||+++|+ +++++|+|+|+.|++||++|||++.++.+||.++. ...++ ..++|||+||||||+||.
T Consensus 555 lGl~~AG~-~~vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~~~~vDll~GGpPCQ~FS~ 633 (1002)
T 3swr_A 555 EGFHQAGI-SDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSG 633 (1002)
T ss_dssp HHHHHHTS-EEEEEEECSSHHHHHHHHHHCTTSEEECSCHHHHHHHHHHTCSBCTTCCBCCCTTTCSEEEECCCCTTCCS
T ss_pred HHHHHCCC-CceEEEEECCHHHHHHHHHhCCCCccccccHHHHhhhccchhhhhhhhhhcccCCCeeEEEEcCCCcchhh
Confidence 58999983 39999999999999999999999888888887653 22333 236999999999999999
Q ss_pred cCCCC--CCCCchhhHHHHHHHHccccCCCcEEEEccccCCCcc---hHHHHHHHHHHhCCCeEEEEEEccCCCCccccC
Q psy3543 69 TGLQK--DIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGS---RSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSR 143 (250)
Q Consensus 69 ag~~~--~~~d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~---~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R 143 (250)
+|+++ +.+|+|+.||++++++|++++ |++|+||||+||++. ..++.+++.|+++||++.+.+|||++||+||+|
T Consensus 634 ag~~~~~~~~d~R~~L~~~~~riv~~~r-Pk~~llENV~glls~~~~~~~~~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R 712 (1002)
T 3swr_A 634 MNRFNSRTYSKFKNSLVVSFLSYCDYYR-PRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTR 712 (1002)
T ss_dssp SSCCCHHHHHHHTTSHHHHHHHHHHHHC-CSEEEEEEEGGGGTTGGGHHHHHHHHHHHHHTCEEEEEEEEGGGGTCSBCC
T ss_pred hCCCCCCcccchhhHHHHHHHHHHHHhC-CCEEEEeccHHHhccCcchHHHHHHHHHHhcCCeEEEEEEEHHHCCCCccc
Confidence 99753 346889999999999999999 999999999999873 579999999999999999999999999999999
Q ss_pred ceEEEEEEeCCC
Q psy3543 144 TRYYLIAKRSPA 155 (250)
Q Consensus 144 ~R~~lva~~~~~ 155 (250)
+|+||||++.+.
T Consensus 713 ~R~fiva~r~g~ 724 (1002)
T 3swr_A 713 RRAIILAAAPGE 724 (1002)
T ss_dssp EEEEEEEECTTS
T ss_pred eEEEEEEEeCCC
Confidence 999999999885
No 11
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=100.00 E-value=3.5e-35 Score=300.77 Aligned_cols=152 Identities=20% Similarity=0.280 Sum_probs=133.7
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccc------------cccccC-CCCcEEEeCCCCchhhh
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFS------------IEEINA-MSPDVILMSPPCQPFTR 68 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~------------~~~~~~-~~~Dll~~gpPCQ~fS~ 68 (250)
.||+++|+ +++++|+|+|+.|++||++|||++.++.+||.++. ...++. .++|||+||||||+||.
T Consensus 866 lGfe~AG~-~~vv~avEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp~~~~vDvl~GGpPCQ~FS~ 944 (1330)
T 3av4_A 866 EGFHQAGI-SETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSG 944 (1330)
T ss_dssp HHHHHTTS-EEEEEEECCSHHHHHHHHHHCTTSEEECSCHHHHHHHHTTTCSBCSSCCBCCCTTTCSEEEECCCCTTTCS
T ss_pred HHHHHCCC-CceEEEEECCHHHHHHHHHhCCCCcEeeccHHHHhHhhhccchhhhhhhhccccCccceEEecCCCccccc
Confidence 58999984 38999999999999999999999877777876553 223332 26899999999999999
Q ss_pred cCCCC--CCCCchhhHHHHHHHHccccCCCcEEEEccccCCCcc---hHHHHHHHHHHhCCCeEEEEEEccCCCCccccC
Q psy3543 69 TGLQK--DIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGS---RSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSR 143 (250)
Q Consensus 69 ag~~~--~~~d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~---~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R 143 (250)
+|+++ +.+|+|+.||++++++|+.++ |++|+||||+||++. ..++.++..|+++||++.+.+|||++||+||+|
T Consensus 945 agr~~~~~~~d~R~~L~~~~lriv~~~r-Pk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R 1023 (1330)
T 3av4_A 945 MNRFNSRTYSKFKNSLVVSFLSYCDYYR-PRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTR 1023 (1330)
T ss_dssp SSCCCHHHHHHHHHSHHHHHHHHHHHHC-CSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCC
T ss_pred ccccccccccchhhHHHHHHHHHHHHhc-CcEEEEeccHHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccc
Confidence 99753 356889999999999999999 999999999999874 579999999999999999999999999999999
Q ss_pred ceEEEEEEeCCC
Q psy3543 144 TRYYLIAKRSPA 155 (250)
Q Consensus 144 ~R~~lva~~~~~ 155 (250)
+|+||||++.+.
T Consensus 1024 ~Rvfivg~r~~~ 1035 (1330)
T 3av4_A 1024 RRAIILAAAPGE 1035 (1330)
T ss_dssp EEEEEEEECTTS
T ss_pred cEEEEEEecCCC
Confidence 999999999875
No 12
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=257.70 Aligned_cols=144 Identities=13% Similarity=0.199 Sum_probs=123.9
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccC-CCCcEEEeCCCCchhhhcC-CCCCCCCch
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINA-MSPDVILMSPPCQPFTRTG-LQKDIADAR 79 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~-~~~Dll~~gpPCQ~fS~ag-~~~~~~d~r 79 (250)
.||+++|+..++|+++|+|+.|++||++|||+..++.+||++++.+++++ .++|+|+||||||+||.+| +++|.+|+|
T Consensus 31 ~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~i~~~~~~Dll~ggpPCQ~fS~ag~~r~g~~d~r 110 (295)
T 2qrv_A 31 LVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGT 110 (295)
T ss_dssp HHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHHHHHTCCCSEEEECCCCGGGBTTCTTCCTTTSTT
T ss_pred HHHHHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHHhcccCCcCEEEecCCCccccccCcccccccccc
Confidence 58899995555599999999999999999998767899999999888763 2699999999999999999 788899999
Q ss_pred hhHHHHHHHHccccCCCc-------EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEe
Q psy3543 80 CTALSYLIETIPAIPSLQ-------CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKR 152 (250)
Q Consensus 80 ~~l~~~~~~ii~~~~~P~-------~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~ 152 (250)
+.||++++++|++++ |+ +|+||||+|++++. ...+.+.|+. .+.+|||.+|| ||+|+|+|+ |.+
T Consensus 111 ~~L~~~~~rii~~~~-P~~~~~~P~~~l~ENV~gl~~~~-~~~~~~~l~~-----~~~vl~a~~~~-PQ~R~R~~i-~~~ 181 (295)
T 2qrv_A 111 GRLFFEFYRLLHDAR-PKEGDDRPFFWLFENVVAMGVSD-KRDISRFLES-----NPVMIDAKEVS-AAHRARYFW-GNL 181 (295)
T ss_dssp TTHHHHHHHHHHHHS-CCTTCCCCCEEEEEEESSBCHHH-HHHHHHHHTS-----CCCCEEGGGTS-SBCCEEEEE-ECC
T ss_pred chhHHHHHHHHHHhC-cccccCCccEEEEEcCcchhhcC-ccHHHHHHhc-----CcEEeecceEC-CccCcEEEE-EEe
Confidence 999999999999999 99 99999999998753 2346666653 36789999996 999999998 655
Q ss_pred CC
Q psy3543 153 SP 154 (250)
Q Consensus 153 ~~ 154 (250)
.+
T Consensus 182 ~~ 183 (295)
T 2qrv_A 182 PG 183 (295)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 13
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=99.93 E-value=6.1e-27 Score=211.98 Aligned_cols=139 Identities=9% Similarity=0.043 Sum_probs=108.3
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccC-CCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINA-MSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~-~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
||+++| |++ ++|||+..++.+||++++.+++++ .++|||+||||||+||.+| +|+.
T Consensus 202 Gl~~aG--f~v--------------~~N~~~~~~~~~DI~~i~~~~i~~~~~~DlliGG~PCQ~FS~A~-------~Rg~ 258 (386)
T 2pv0_B 202 ELTSLG--FLE--------------SGSDPGQLKHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDR-------PPSW 258 (386)
T ss_dssp HHHHTT--SSC--------------SSCCSCSEEEESCCTTCCHHHHHHSCCCSEEEEECCCTTTCSCS-------CTHH
T ss_pred hHhhcC--ccH--------------HHcCCCCcEEeCChhhCCHhHhcccCCCCEEEECCCCCcccccC-------Ccch
Confidence 688888 443 589988666789999999877643 2789999999999999985 5789
Q ss_pred HHHHHHHHccccCCCc-------EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCC
Q psy3543 82 ALSYLIETIPAIPSLQ-------CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 154 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~-------~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~ 154 (250)
||++++|+|++++ |+ +|+||||+|+.+ .....+...|+ +.+.+|||.+||+||+|+| +++.+++
T Consensus 259 Lf~ef~Riv~~~r-Pk~~~~~P~~fv~ENV~gL~~-~~~~~i~~~L~-----v~~~VLnA~dyGVPQrRrR--f~g~~~~ 329 (386)
T 2pv0_B 259 YLFQFHRLLQYAR-PKPGSPGPFFWMFVDNLVLNK-EDLDVASRFLE-----MEPVTIPDVHGGSLQNAVR--VWSNIPA 329 (386)
T ss_dssp HHHHHHHHHHHHS-CCSSCCSCCEEEEEECSCSCH-HHHHHHHHHTT-----SCCCEEECCCSSSCCCEEE--EEECSSS
T ss_pred HHHHHHHHHHHhC-CCcccCCCcEEEEEechhhhh-cchHHHHHHHc-----CCeEEEEccccCccccccE--EEEECCC
Confidence 9999999999999 97 899999999954 33445555553 5677999999999999999 4576665
Q ss_pred CCCCCCCCcccCchhhhhhcCCc
Q psy3543 155 AAHSSEASFCFETSSELMTELPK 177 (250)
Q Consensus 155 ~~~~~~~~f~~~~~~~~~~~~p~ 177 (250)
. ...+.+++..+.+..+|.
T Consensus 330 ~----~~~~~~p~~~~~~s~l~~ 348 (386)
T 2pv0_B 330 I----RSRHWALVSEEELSLLAQ 348 (386)
T ss_dssp S----STTCCTTSCHHHHHHHHH
T ss_pred c----CCcCCCCcCccccccccc
Confidence 4 224567766666666554
No 14
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.92 E-value=3.6e-26 Score=194.42 Aligned_cols=112 Identities=7% Similarity=-0.003 Sum_probs=82.6
Q ss_pred HHhCCCCCccccCccccccccccC-CCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccccCCCc-------EE
Q psy3543 28 KHNFPRTNLRGRNIQSFSIEEINA-MSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQ-------CL 99 (250)
Q Consensus 28 ~~N~~~~~~~~~dI~~~~~~~~~~-~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~~~~P~-------~i 99 (250)
+.||++..++.+||++++.+++++ .++|||+||||||+||.+| +|+.||++++|+|++++ |+ +|
T Consensus 55 ~~N~~~~~~~~~DI~~i~~~~i~~~~~~DlliGG~PCQ~FS~ag-------~rg~Lf~ef~Riv~~~r-Pk~~~~~P~~f 126 (230)
T 2qrv_B 55 SGSDPGQLKHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDR-------PPSWYLFQFHRLLQYAR-PKPGSPRPFFW 126 (230)
T ss_dssp -----CCEEEESCCTTCCHHHHHHTCCCSEEEEECCCTTTSSCS-------CTHHHHHHHHHHHHHHC-CCSSCCSCCEE
T ss_pred hhcCCCCcEecCChhhCCHhHhcccCCCCEEEECCCCCcccccC-------CCchHHHHHHHHHHHHC-cCcccCCCcEE
Confidence 478887656789999999887753 2789999999999999987 37899999999999999 88 89
Q ss_pred EEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 100 LLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 100 ~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
+||||+|+.++ ....+.+.|+ +.+.+|||.+||+||+| |+|+ +...+.
T Consensus 127 v~ENV~gL~~~-~~~~i~~~l~-----~~~~vLnA~dfgvpQrR-r~f~-g~~~~~ 174 (230)
T 2qrv_B 127 MFVDNLVLNKE-DLDVASRFLE-----MEPVTIPDVHGGSLQNA-VRVW-SNIPAI 174 (230)
T ss_dssp EEEECSCSCHH-HHHHHHHHHT-----SCCEECCCCCSCC-----CEEE-ECSTTS
T ss_pred EEeccHHhhhc-cHHHHHHHHc-----CCcEEEEcccCCcCccc-EEEE-eecCCC
Confidence 99999999754 3355666663 34578999999999999 4444 655543
No 15
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.68 E-value=6.5e-05 Score=67.05 Aligned_cols=135 Identities=18% Similarity=0.069 Sum_probs=85.9
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----C--CCccccCccccccccc-cCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----R--TNLRGRNIQSFSIEEI-NAMSPDVILMSPPCQPFTRTGLQKDIADARCTALS 84 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~--~~~~~~dI~~~~~~~~-~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~ 84 (250)
.|.++|+++.+.+..+.|.. + ..++++|+.++..... ....+|++++.|||.+.+..+......+....++.
T Consensus 177 ~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~ 256 (332)
T 2igt_A 177 EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLD 256 (332)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHH
Confidence 67899999999999888752 1 3456778776543211 12268999999999876633211000011112333
Q ss_pred HHHHHccccCCCc-EEEEccccCCC-cchHHH-HHHHHHHhCCCeEEEEEEccCCCCcccc-CceEEEEEE
Q psy3543 85 YLIETIPAIPSLQ-CLLLENVKGFE-GSRSRD-LITSMLTRAGFRFQEFLLSPTQFGVPNS-RTRYYLIAK 151 (250)
Q Consensus 85 ~~~~ii~~~~~P~-~i~~ENV~~~~-~~~~~~-~i~~~L~~~GY~v~~~il~a~~~GvPq~-R~R~~lva~ 151 (250)
... +.++ |. ++++++..... +...+. .+.+.+.+.|+.+....+.....++||. +.|++..+.
T Consensus 257 ~~~---~~Lk-pgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~~~e~~~p~~~~~q~~~~r~lp~g~ 323 (332)
T 2igt_A 257 ICR---EILS-PKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVASGELVIREAGLDGKTPGRVLSTSL 323 (332)
T ss_dssp HHH---HTBC-TTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEEEEEEEEECCCSSSCCCCCEEEEEE
T ss_pred HHH---HhcC-cCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEEEEEEecccCCcccccCCceeeeEE
Confidence 333 3345 53 44777776543 333444 4444777899999887888888999999 999887664
No 16
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=96.69 E-value=0.021 Score=44.97 Aligned_cols=125 Identities=13% Similarity=0.088 Sum_probs=81.3
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccc
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPA 92 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~ 92 (250)
.+.++|+++.+.+..+.++++..++..|+.++. ++...+|++++.+++-.+.. .+....++.++.++++
T Consensus 70 ~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~~~~D~i~~~~~~~~~~~-------~~~~~~~l~~~~~~l~- 138 (195)
T 3cgg_A 70 DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQ---ISETDFDLIVSAGNVMGFLA-------EDGREPALANIHRALG- 138 (195)
T ss_dssp EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSC---CCCCCEEEEEECCCCGGGSC-------HHHHHHHHHHHHHHEE-
T ss_pred cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCC---CCCCceeEEEECCcHHhhcC-------hHHHHHHHHHHHHHhC-
Confidence 578899999999999999987767788887753 23336899999877654421 1122345555555554
Q ss_pred cCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeC
Q psy3543 93 IPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153 (250)
Q Consensus 93 ~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~ 153 (250)
|. .+++. ++.- .......+.+.|++.||.+....-+.......+...++++++.++
T Consensus 139 ---~~G~l~~~-~~~~-~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 139 ---ADGRAVIG-FGAG-RGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp ---EEEEEEEE-EETT-SSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred ---CCCEEEEE-eCCC-CCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 42 22332 2111 123567888899999999876655544445566778888888653
No 17
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=95.95 E-value=0.04 Score=47.24 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=71.1
Q ss_pred EEEEEEeCcHHHHHHHHHhCC-----C-CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP-----R-TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~-----~-~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
..|.++|+++.+.+..+.|.. + ..++++|+.++.. ...+|++++.||+.. ..++.+
T Consensus 149 ~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~----~~~fD~Vi~~~p~~~--------------~~~l~~ 210 (278)
T 2frn_A 149 AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG----ENIADRILMGYVVRT--------------HEFIPK 210 (278)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC----CSCEEEEEECCCSSG--------------GGGHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc----cCCccEEEECCchhH--------------HHHHHH
Confidence 368999999999998888742 1 2356778877755 236899999999422 246666
Q ss_pred HHHHccccCCCcEEEEcccc-CCCcchHHHHHHHHHHhCCCeEEE
Q psy3543 86 LIETIPAIPSLQCLLLENVK-GFEGSRSRDLITSMLTRAGFRFQE 129 (250)
Q Consensus 86 ~~~ii~~~~~P~~i~~ENV~-~~~~~~~~~~i~~~L~~~GY~v~~ 129 (250)
+.++++. . -.+++.++++ +......++.+.+.+++.||.+..
T Consensus 211 ~~~~Lkp-g-G~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 211 ALSIAKD-G-AIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp HHHHEEE-E-EEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred HHHHCCC-C-eEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 7776653 1 3688888886 455566788899999999998865
No 18
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=95.60 E-value=0.44 Score=37.26 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=75.9
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccc
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPA 92 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~ 92 (250)
-|.++|+++.+.+. .+...++++|+.+..+. ..+|++++.||-...+......+..+ ...++.++++.+
T Consensus 46 ~v~gvD~s~~~~~~----~~~~~~~~~d~~~~~~~----~~fD~i~~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l-- 114 (170)
T 3q87_B 46 TVVSTDLNIRALES----HRGGNLVRADLLCSINQ----ESVDVVVFNPPYVPDTDDPIIGGGYL-GREVIDRFVDAV-- 114 (170)
T ss_dssp EEEEEESCHHHHHT----CSSSCEEECSTTTTBCG----GGCSEEEECCCCBTTCCCTTTBCCGG-GCHHHHHHHHHC--
T ss_pred cEEEEECCHHHHhc----ccCCeEEECChhhhccc----CCCCEEEECCCCccCCccccccCCcc-hHHHHHHHHhhC--
Confidence 78999999999987 34455678888763222 27899999999665543322111111 224666777777
Q ss_pred cCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 93 IPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 93 ~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
-. -.+++.++.. ...+.+.+.|++.||.+....-.. + ..+|++.+=..++.
T Consensus 115 pg-G~l~~~~~~~-----~~~~~l~~~l~~~gf~~~~~~~~~--~----~~e~~~~~~~~~~~ 165 (170)
T 3q87_B 115 TV-GMLYLLVIEA-----NRPKEVLARLEERGYGTRILKVRK--I----LGETVYIIKGEKSH 165 (170)
T ss_dssp CS-SEEEEEEEGG-----GCHHHHHHHHHHTTCEEEEEEEEE--C----SSSEEEEEEEECC-
T ss_pred CC-CEEEEEEecC-----CCHHHHHHHHHHCCCcEEEEEeec--c----CCceEEEEEEeccc
Confidence 22 4555555433 346778888999999876554433 2 24688877766653
No 19
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=95.57 E-value=0.021 Score=51.60 Aligned_cols=123 Identities=17% Similarity=0.145 Sum_probs=72.7
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC-------CCCccccCccccccccc-cCCCCcEEEeCCCCchhhhcCCCCCCCCchhhH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP-------RTNLRGRNIQSFSIEEI-NAMSPDVILMSPPCQPFTRTGLQKDIADARCTA 82 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~-------~~~~~~~dI~~~~~~~~-~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l 82 (250)
...|.++|+++.|.+..+.|.. ...++.+|+.++..... ....+|++++.||+...|........ ..-..+
T Consensus 243 ~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~-~~~~~~ 321 (396)
T 3c0k_A 243 CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGAC-RGYKDI 321 (396)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCC-THHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHH-HHHHHH
Confidence 5678999999999999888752 22355677766543211 02268999999998776643321111 111123
Q ss_pred HHHHHHHccccCCC-cEEEEccccCCCcchH-HHHHHHHHHhCCCeEE--EEEEccCCCC
Q psy3543 83 LSYLIETIPAIPSL-QCLLLENVKGFEGSRS-RDLITSMLTRAGFRFQ--EFLLSPTQFG 138 (250)
Q Consensus 83 ~~~~~~ii~~~~~P-~~i~~ENV~~~~~~~~-~~~i~~~L~~~GY~v~--~~il~a~~~G 138 (250)
+...+ +.++ | .++++.+.+....... .+.+.+.+.+.|+.+. .....+.+|-
T Consensus 322 l~~~~---~~Lk-pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~~~~~~d~p 377 (396)
T 3c0k_A 322 NMLAI---QLLN-EGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHP 377 (396)
T ss_dssp HHHHH---HTEE-EEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEEEEECCTTSC
T ss_pred HHHHH---HhcC-CCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEECCCCCCCC
Confidence 33344 4444 5 4666666666555434 4445557888886654 3344555553
No 20
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=95.16 E-value=0.17 Score=40.54 Aligned_cols=95 Identities=18% Similarity=0.279 Sum_probs=61.5
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCC----CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPR----TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~----~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
...+.++|+++.+.+..+.|... ..++++|+.++ +. .+|++++.||+...+. .....++...
T Consensus 72 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-----~~-~~D~v~~~~p~~~~~~--------~~~~~~l~~~ 137 (207)
T 1wy7_A 72 AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF-----NS-RVDIVIMNPPFGSQRK--------HADRPFLLKA 137 (207)
T ss_dssp CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-----CC-CCSEEEECCCCSSSST--------TTTHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHc-----CC-CCCEEEEcCCCccccC--------CchHHHHHHH
Confidence 45789999999999999998752 33456666654 22 6899999999765432 1112345555
Q ss_pred HHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEE
Q psy3543 87 IETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQ 128 (250)
Q Consensus 87 ~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~ 128 (250)
.+++ . - .+++- +........+.+.|++.||.+.
T Consensus 138 ~~~l---~-~-~~~~~----~~~~~~~~~~~~~l~~~g~~~~ 170 (207)
T 1wy7_A 138 FEIS---D-V-VYSIH----LAKPEVRRFIEKFSWEHGFVVT 170 (207)
T ss_dssp HHHC---S-E-EEEEE----ECCHHHHHHHHHHHHHTTEEEE
T ss_pred HHhc---C-c-EEEEE----eCCcCCHHHHHHHHHHCCCeEE
Confidence 5555 3 2 22222 1123456778888999998875
No 21
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=94.79 E-value=0.34 Score=40.55 Aligned_cols=130 Identities=7% Similarity=0.105 Sum_probs=69.8
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCC---CC----Cch
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKD---IA----DAR 79 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~---~~----d~r 79 (250)
.|.++|+++.+.+.-+.|.. ...++++|+.++.. .++...+|+++..||+-..+..+.... .. ...
T Consensus 74 ~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~-~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~ 152 (259)
T 3lpm_A 74 KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD-LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVM 152 (259)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGG-TSCTTCEEEEEECCCC-----------------------
T ss_pred cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhh-hhccCCccEEEECCCCCCCccccCCCCchHHHhhhcccc
Confidence 78899999999888877743 13456788887653 233347999999999876633332110 00 000
Q ss_pred ---hhHHHHHHHHccccCCC--cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCC
Q psy3543 80 ---CTALSYLIETIPAIPSL--QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 154 (250)
Q Consensus 80 ---~~l~~~~~~ii~~~~~P--~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~ 154 (250)
..++..+.+++ + | .++++ ........++..+++.|+.+.....-...-|.| -.|+++.+.+.+
T Consensus 153 ~~~~~~l~~~~~~L---k-pgG~l~~~------~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~k~~ 220 (259)
T 3lpm_A 153 CTLEDTIRVAASLL---K-QGGKANFV------HRPERLLDIIDIMRKYRLEPKRIQFVHPRSDRE--ANTVLVEGIKDG 220 (259)
T ss_dssp HHHHHHHHHHHHHE---E-EEEEEEEE------ECTTTHHHHHHHHHHTTEEEEEEEEEESSTTSC--CSEEEEEEEETC
T ss_pred CCHHHHHHHHHHHc---c-CCcEEEEE------EcHHHHHHHHHHHHHCCCceEEEEEeecCCCCC--cEEEEEEEEeCC
Confidence 12333333343 3 4 33432 123456778888999998876543322222222 245666666654
Q ss_pred C
Q psy3543 155 A 155 (250)
Q Consensus 155 ~ 155 (250)
.
T Consensus 221 ~ 221 (259)
T 3lpm_A 221 K 221 (259)
T ss_dssp C
T ss_pred C
Confidence 4
No 22
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=94.08 E-value=0.37 Score=37.18 Aligned_cols=98 Identities=11% Similarity=0.123 Sum_probs=61.2
Q ss_pred cEEEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
...+.++|+++.+.+..+.|. +...++.+|+.+. ++...+|++++.+| .+ ...++..
T Consensus 57 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~i~~~~~-------------~~-~~~~l~~ 118 (183)
T 2yxd_A 57 CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV----LDKLEFNKAFIGGT-------------KN-IEKIIEI 118 (183)
T ss_dssp SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH----GGGCCCSEEEECSC-------------SC-HHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc----ccCCCCcEEEECCc-------------cc-HHHHHHH
Confidence 456789999999988887775 2333556676652 22237899999888 11 1234444
Q ss_pred HHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccC
Q psy3543 86 LIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPT 135 (250)
Q Consensus 86 ~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~ 135 (250)
+.++ . --.+++.. + .......+.+.|++.||.+........
T Consensus 119 ~~~~----~-gG~l~~~~-~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 159 (183)
T 2yxd_A 119 LDKK----K-INHIVANT-I---VLENAAKIINEFESRGYNVDAVNVFIS 159 (183)
T ss_dssp HHHT----T-CCEEEEEE-S---CHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HhhC----C-CCEEEEEe-c---ccccHHHHHHHHHHcCCeEEEEEeeee
Confidence 4444 2 33333332 1 124577899999999998876654433
No 23
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=93.64 E-value=1 Score=35.92 Aligned_cols=130 Identities=14% Similarity=0.125 Sum_probs=74.7
Q ss_pred HhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccC-CCCcEEEeCCCCchhhhcCCCCCCCCchhhH
Q psy3543 4 LSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINA-MSPDVILMSPPCQPFTRTGLQKDIADARCTA 82 (250)
Q Consensus 4 L~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~-~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l 82 (250)
|.+.| . .+.++|+++.+.+.-+.+ +...+...|+.++....... ..+|+++....-. ..+. ..+
T Consensus 70 l~~~~--~-~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~----------~~~~-~~~ 134 (227)
T 3e8s_A 70 LADRG--I-EAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL----------HQDI-IEL 134 (227)
T ss_dssp HHTTT--C-EEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC----------SSCC-HHH
T ss_pred HHHCC--C-EEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCccEEEECchhh----------hhhH-HHH
Confidence 44444 4 478999999999988888 44455677777763322222 2489999876543 1222 246
Q ss_pred HHHHHHHccccCCCcEEEEcccc------------------CCCc--------chHHHHHHHHHHhCCCeEEEEEEccCC
Q psy3543 83 LSYLIETIPAIPSLQCLLLENVK------------------GFEG--------SRSRDLITSMLTRAGFRFQEFLLSPTQ 136 (250)
Q Consensus 83 ~~~~~~ii~~~~~P~~i~~ENV~------------------~~~~--------~~~~~~i~~~L~~~GY~v~~~il~a~~ 136 (250)
+.++.++++.-- .+++.+..+ ++.. ....+.+.+.|++.||.+....- ..
T Consensus 135 l~~~~~~L~pgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~--~~ 210 (227)
T 3e8s_A 135 LSAMRTLLVPGG--ALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQE--PQ 210 (227)
T ss_dssp HHHHHHTEEEEE--EEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEEC--CC
T ss_pred HHHHHHHhCCCe--EEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEec--CC
Confidence 666666654211 233322211 1110 12578999999999999876543 12
Q ss_pred CCccccCceEEEEEEe
Q psy3543 137 FGVPNSRTRYYLIAKR 152 (250)
Q Consensus 137 ~GvPq~R~R~~lva~~ 152 (250)
+.-......++++|.+
T Consensus 211 ~~~~~~~~~~~~va~k 226 (227)
T 3e8s_A 211 HPQSAVPQSLLMVAER 226 (227)
T ss_dssp CTTCSSCSCEEEEEEE
T ss_pred CCCCCCceeEEEEeec
Confidence 2111123467777765
No 24
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=92.91 E-value=1.1 Score=36.36 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=83.1
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
-|.++|+++.+.+.-+.+.+. ..++.+|+.++.+.. .+|+++.......+. .+....++.++
T Consensus 90 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~----~fD~v~~~~~l~~~~--------~~~~~~~l~~~ 157 (235)
T 3lcc_A 90 FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTE----LFDLIFDYVFFCAIE--------PEMRPAWAKSM 157 (235)
T ss_dssp EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSS----CEEEEEEESSTTTSC--------GGGHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCC----CeeEEEEChhhhcCC--------HHHHHHHHHHH
Confidence 478999999999988888765 235577777755322 689999765433221 12333566666
Q ss_pred HHHccccCCCcEEEEccccCCC-c----chHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCC
Q psy3543 87 IETIPAIPSLQCLLLENVKGFE-G----SRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 154 (250)
Q Consensus 87 ~~ii~~~~~P~~i~~ENV~~~~-~----~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~ 154 (250)
.++++.- -.+++++....-. . .-..+.+.+.|++.||.+.............+.++++...+..+.
T Consensus 158 ~~~Lkpg--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~g~e~~~~~~~~~~ 228 (235)
T 3lcc_A 158 YELLKPD--GELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENPHAIPTRKGKEKLGRWKKINL 228 (235)
T ss_dssp HHHEEEE--EEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECTTCCTTTTTSCEEEEEEESCC
T ss_pred HHHCCCC--cEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecCCccccccCHHHHhhhhhccc
Confidence 6666532 2455444432211 1 134678889999999999888777777777788888877665443
No 25
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=92.62 E-value=1.6 Score=36.66 Aligned_cols=55 Identities=9% Similarity=0.113 Sum_probs=39.1
Q ss_pred EEEEEEeCcHHHHHHHHHhCCC---------CCccccCccccccc----cccCCCCcEEEeCCCCchh
Q psy3543 12 EVVTAIDINTSANSVYKHNFPR---------TNLRGRNIQSFSIE----EINAMSPDVILMSPPCQPF 66 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~---------~~~~~~dI~~~~~~----~~~~~~~Dll~~gpPCQ~f 66 (250)
..+.++|+++.+.+.-+.|... ..++++|+.+.... .++...+|+++..||.-..
T Consensus 61 ~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~ 128 (260)
T 2ozv_A 61 AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDA 128 (260)
T ss_dssp EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---
T ss_pred CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCC
Confidence 4678999999999999998765 23567788776331 2333478999999998765
No 26
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=92.50 E-value=2.2 Score=33.55 Aligned_cols=123 Identities=15% Similarity=0.040 Sum_probs=77.4
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccc
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPA 92 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~ 92 (250)
-+.++|+++.+.+.-+.++++..++.+|+.++. ++...+|++++...-..++ .+....++.++.++++.
T Consensus 65 ~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~--------~~~~~~~l~~~~~~L~p 133 (203)
T 3h2b_A 65 QIEGLEPATRLVELARQTHPSVTFHHGTITDLS---DSPKRWAGLLAWYSLIHMG--------PGELPDALVALRMAVED 133 (203)
T ss_dssp CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGG---GSCCCEEEEEEESSSTTCC--------TTTHHHHHHHHHHTEEE
T ss_pred eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccc---cCCCCeEEEEehhhHhcCC--------HHHHHHHHHHHHHHcCC
Confidence 568899999999999999888777888988764 3333789999864321111 12223455566655542
Q ss_pred cCCCcEEEEccccCCC----------cchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 93 IPSLQCLLLENVKGFE----------GSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 93 ~~~P~~i~~ENV~~~~----------~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
-- .+++......-. ..-..+.+.+.|++.||.+.....-.. |...+++..+...
T Consensus 134 gG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~-------~p~~~l~~~~~~~ 197 (203)
T 3h2b_A 134 GG--GLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR-------FPHAYLTAEASLE 197 (203)
T ss_dssp EE--EEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT-------SSEEEEEEEECC-
T ss_pred Cc--EEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC-------Ccchhhhhhhhhh
Confidence 11 333333222110 012467889999999999876654433 7888888887654
No 27
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=92.46 E-value=0.59 Score=37.15 Aligned_cols=92 Identities=23% Similarity=0.277 Sum_probs=59.9
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHc
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETI 90 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii 90 (250)
...|.++|+++.+.+..+.|.+...++++|+.++. ..+|++++.||-..++. + .....+.++++++
T Consensus 74 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~------~~~D~v~~~~p~~~~~~-----~---~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 74 AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS------GKYDTWIMNPPFGSVVK-----H---SDRAFIDKAFETS 139 (200)
T ss_dssp BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC------CCEEEEEECCCC---------------CHHHHHHHHHHE
T ss_pred CCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC------CCeeEEEECCCchhccC-----c---hhHHHHHHHHHhc
Confidence 55789999999999999999875556778887753 26899999999765542 1 1123555666665
Q ss_pred cccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEE
Q psy3543 91 PAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQ 128 (250)
Q Consensus 91 ~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~ 128 (250)
. .++++-|. .....+.+.+++.| .+.
T Consensus 140 ---g--~~~~~~~~------~~~~~~~~~~~~~g-~~~ 165 (200)
T 1ne2_A 140 ---M--WIYSIGNA------KARDFLRREFSARG-DVF 165 (200)
T ss_dssp ---E--EEEEEEEG------GGHHHHHHHHHHHE-EEE
T ss_pred ---C--cEEEEEcC------chHHHHHHHHHHCC-CEE
Confidence 3 23444332 24666777888888 554
No 28
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=91.53 E-value=0.63 Score=40.49 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=40.8
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCC
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~ 71 (250)
.|.|+|+++.+.+..+.|. ++..++++|+.++.. .. ..+|+++..+||.+.....+
T Consensus 145 ~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--~~-~~fD~Il~d~Pcsg~g~~~~ 205 (315)
T 1ixk_A 145 VIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--LN-VEFDKILLDAPCTGSGTIHK 205 (315)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--GC-CCEEEEEEECCTTSTTTCC-
T ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--cc-ccCCEEEEeCCCCCcccccC
Confidence 6789999999988887774 234456778776643 22 26899999999987765543
No 29
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=91.45 E-value=2.5 Score=34.08 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=62.6
Q ss_pred EEEEEEeCcHHHHHHHHHhCC----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCC------CCCCchhh
Q psy3543 12 EVVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQK------DIADARCT 81 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~------~~~d~r~~ 81 (250)
.-|.++|+++.+.+.-+.|.. ...++.+|+..+. .++...+|++++.||+-......... +..+.. .
T Consensus 80 ~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~-~ 156 (230)
T 3evz_A 80 CKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIK--GVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGE-E 156 (230)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSST--TTCCSCEEEEEECCCCC---------------CCSSSC-H
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhh--hcccCceeEEEECCCCcCCccccccChhhhhccCccch-H
Confidence 357899999999888777642 3345667764432 22233789999999986655321100 001111 2
Q ss_pred HHHHHHHH-ccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEE
Q psy3543 82 ALSYLIET-IPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLL 132 (250)
Q Consensus 82 l~~~~~~i-i~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il 132 (250)
.+..+++. .+.++ |.-.++=-++. .......+.+.|++.||.+.....
T Consensus 157 ~~~~~l~~~~~~Lk-pgG~l~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~ 205 (230)
T 3evz_A 157 FSVKLLEEAFDHLN-PGGKVALYLPD--KEKLLNVIKERGIKLGYSVKDIKF 205 (230)
T ss_dssp HHHHHHHHHGGGEE-EEEEEEEEEES--CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHhC-CCeEEEEEecc--cHhHHHHHHHHHHHcCCceEEEEe
Confidence 23444443 33445 64332222221 114577889999999998765543
No 30
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=91.16 E-value=0.78 Score=39.53 Aligned_cols=98 Identities=12% Similarity=0.061 Sum_probs=62.9
Q ss_pred EEEEEEeCcHHHHHHHHHhCC-----C-CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP-----R-TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~-----~-~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
.-|+|+|+|+.|.+..+.|.. + ..++++|..++..+ ..+|.+++++|... -..+..
T Consensus 149 ~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~----~~~D~Vi~~~p~~~--------------~~~l~~ 210 (278)
T 3k6r_A 149 AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE----NIADRILMGYVVRT--------------HEFIPK 210 (278)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC----SCEEEEEECCCSSG--------------GGGHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc----cCCCEEEECCCCcH--------------HHHHHH
Confidence 357899999999999998842 1 23467787766442 25799999999432 123445
Q ss_pred HHHHccccCCCcEEEEccccCCC-cchHHHHHHHHHHhCCCeEEE
Q psy3543 86 LIETIPAIPSLQCLLLENVKGFE-GSRSRDLITSMLTRAGFRFQE 129 (250)
Q Consensus 86 ~~~ii~~~~~P~~i~~ENV~~~~-~~~~~~~i~~~L~~~GY~v~~ 129 (250)
.+++++. . --..+-+||+.-. .....+.+.+..++.||.+..
T Consensus 211 a~~~lk~-g-G~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~ 253 (278)
T 3k6r_A 211 ALSIAKD-G-AIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp HHHHEEE-E-EEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred HHHHcCC-C-CEEEEEeeecccccchhHHHHHHHHHHHcCCcEEE
Confidence 6666542 1 1333456765422 234567777788889998753
No 31
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=91.13 E-value=3.3 Score=32.96 Aligned_cols=119 Identities=13% Similarity=0.178 Sum_probs=72.1
Q ss_pred EEEEEeCcHHHHHHHHHhCC-CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCch-hhHHHHHHHHc
Q psy3543 13 VVTAIDINTSANSVYKHNFP-RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADAR-CTALSYLIETI 90 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r-~~l~~~~~~ii 90 (250)
-+.++|+++.+.+..+.+.+ ...++.+|+.++... ..+|++++......+ .++. ..++.++.+++
T Consensus 69 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~----~~fD~v~~~~~l~~~---------~~~~~~~~l~~~~~~L 135 (220)
T 3hnr_A 69 TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP----TSIDTIVSTYAFHHL---------TDDEKNVAIAKYSQLL 135 (220)
T ss_dssp EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC----SCCSEEEEESCGGGS---------CHHHHHHHHHHHHHHS
T ss_pred eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC----CCeEEEEECcchhcC---------ChHHHHHHHHHHHHhc
Confidence 57889999999999999987 556778888887543 278999987542221 2221 22555565555
Q ss_pred cccCCCcEEEEccccCCCc-------------------------chHHHHHHHHHHhCCCeEEEEEEccCCCCccccCce
Q psy3543 91 PAIPSLQCLLLENVKGFEG-------------------------SRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTR 145 (250)
Q Consensus 91 ~~~~~P~~i~~ENV~~~~~-------------------------~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R 145 (250)
+.- -.+++.+....-.. ....+.+.+.|++.||.+.....+ ...
T Consensus 136 kpg--G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~---------~~~ 204 (220)
T 3hnr_A 136 NKG--GKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLN---------HFV 204 (220)
T ss_dssp CTT--CEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEECS---------SSE
T ss_pred CCC--CEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeecc---------ceE
Confidence 421 14444432211000 012367888999999988776655 234
Q ss_pred EEEEEEeCCC
Q psy3543 146 YYLIAKRSPA 155 (250)
Q Consensus 146 ~~lva~~~~~ 155 (250)
+++.+.+.+.
T Consensus 205 w~~~~~~~~~ 214 (220)
T 3hnr_A 205 WVMEATKQLE 214 (220)
T ss_dssp EEEEEEECSC
T ss_pred EEEeehhhhh
Confidence 4555555544
No 32
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=91.11 E-value=0.17 Score=45.53 Aligned_cols=111 Identities=11% Similarity=0.172 Sum_probs=58.4
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCC-------CCCccccCccccccccc-cCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFP-------RTNLRGRNIQSFSIEEI-NAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~-------~~~~~~~dI~~~~~~~~-~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
+...|.++|+++.|.+.-+.|.. ...++.+|+.+..+... ....+|++++-||+-..|.. ...+.. .
T Consensus 234 ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~----~~~~~~-~ 308 (385)
T 2b78_A 234 GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKK----EVFSVS-K 308 (385)
T ss_dssp TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC---------CCCCHH-H
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChh----hHHHHH-H
Confidence 35678999999999888887741 23456777766433211 12268999999998654421 111111 1
Q ss_pred HHHHHHH-HccccCCC-cEEEEccccCCCc-chHHHHHHHHHHhCCCe
Q psy3543 82 ALSYLIE-TIPAIPSL-QCLLLENVKGFEG-SRSRDLITSMLTRAGFR 126 (250)
Q Consensus 82 l~~~~~~-ii~~~~~P-~~i~~ENV~~~~~-~~~~~~i~~~L~~~GY~ 126 (250)
.+.++++ +...++ | -.++++.-+.... ....+.+.+.+.+.|..
T Consensus 309 ~~~~ll~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 309 DYHKLIRQGLEILS-ENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp HHHHHHHHHHHTEE-EEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHhcC-CCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence 2222322 223344 5 3444554443333 33444555556666665
No 33
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=90.34 E-value=0.84 Score=40.06 Aligned_cols=90 Identities=13% Similarity=0.131 Sum_probs=59.6
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHH
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTAL 83 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~ 83 (250)
+...|.++|+++.|.+..+.|.. ...++++|+.++. ..+|++++.||.... .++
T Consensus 215 ~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~------~~fD~Vi~dpP~~~~--------------~~l 274 (336)
T 2yx1_A 215 NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD------VKGNRVIMNLPKFAH--------------KFI 274 (336)
T ss_dssp TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC------CCEEEEEECCTTTGG--------------GGH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc------CCCcEEEECCcHhHH--------------HHH
Confidence 35578999999999999888742 2335567776654 278999999985321 466
Q ss_pred HHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhC-CCeE
Q psy3543 84 SYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRA-GFRF 127 (250)
Q Consensus 84 ~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~-GY~v 127 (250)
..++++++. . ..+++.++.+. ...+.+.|++. ||.+
T Consensus 275 ~~~~~~L~~-g-G~l~~~~~~~~------~~~~~~~l~~~~~~~i 311 (336)
T 2yx1_A 275 DKALDIVEE-G-GVIHYYTIGKD------FDKAIKLFEKKCDCEV 311 (336)
T ss_dssp HHHHHHEEE-E-EEEEEEEEESS------SHHHHHHHHHHSEEEE
T ss_pred HHHHHHcCC-C-CEEEEEEeecC------chHHHHHHHHhcCCcE
Confidence 666676653 2 46677788877 23344445554 6655
No 34
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=90.32 E-value=1.7 Score=35.12 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=31.9
Q ss_pred EEEEEeCcHHHHHHHHHhCC----CCCccccCccccccccccCCCCcEEEeCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEEINAMSPDVILMSP 61 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~~~~~~~Dll~~gp 61 (250)
-+.++|+++.+.+.-+.+.+ ...++.+|+.++... ..+|++++..
T Consensus 61 ~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~----~~fD~v~~~~ 109 (246)
T 1y8c_A 61 NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN----RKFDLITCCL 109 (246)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS----CCEEEEEECT
T ss_pred cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc----CCceEEEEcC
Confidence 47899999998887777653 344567787766432 2689999765
No 35
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=90.25 E-value=1.6 Score=38.74 Aligned_cols=104 Identities=8% Similarity=0.018 Sum_probs=61.3
Q ss_pred EEEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
..|.++|+++.+.+.-+.|.. ...++.+|+.+.-+.... ..+|+++..|||.... + ..++.+.
T Consensus 196 ~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~-~~fD~Vi~~~p~~~~~---------~--~~~l~~~ 263 (373)
T 2qm3_A 196 KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYAL-HKFDTFITDPPETLEA---------I--RAFVGRG 263 (373)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTS-SCBSEEEECCCSSHHH---------H--HHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhcc-CCccEEEECCCCchHH---------H--HHHHHHH
Confidence 367899999999888887742 334567888772221122 2689999999987541 1 2233333
Q ss_pred HHHccccCCC-c-EEEEccccCCCcchHHHHHHHHHH-hCCCeEEEEE
Q psy3543 87 IETIPAIPSL-Q-CLLLENVKGFEGSRSRDLITSMLT-RAGFRFQEFL 131 (250)
Q Consensus 87 ~~ii~~~~~P-~-~i~~ENV~~~~~~~~~~~i~~~L~-~~GY~v~~~i 131 (250)
.+ .++ | - +++++-...-.+...+..+.+.+. +.|+.+....
T Consensus 264 ~~---~Lk-pgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 307 (373)
T 2qm3_A 264 IA---TLK-GPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVITDII 307 (373)
T ss_dssp HH---TBC-STTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred HH---Hcc-cCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhhh
Confidence 33 344 5 3 445654431111122356677777 8898775443
No 36
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=90.03 E-value=1 Score=36.49 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=71.3
Q ss_pred EEEEEeCcHHHHHHHHHhCCC---CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPR---TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIET 89 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~---~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~i 89 (250)
-+.++|+++.+.+..+.+.+. ..++.+|+.++... ..+|++++......++ ++.+..++.++.++
T Consensus 70 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----~~fD~v~~~~~l~~~~--------~~~~~~~l~~~~~~ 137 (234)
T 3dtn_A 70 TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE----EKYDMVVSALSIHHLE--------DEDKKELYKRSYSI 137 (234)
T ss_dssp EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC----SCEEEEEEESCGGGSC--------HHHHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC----CCceEEEEeCccccCC--------HHHHHHHHHHHHHh
Confidence 578899999999999988764 33567777776543 2789999876533221 11223466666666
Q ss_pred ccccCCCcEEEEccccCCCc-----------------------------------chHHHHHHHHHHhCCCeEEEEEEcc
Q psy3543 90 IPAIPSLQCLLLENVKGFEG-----------------------------------SRSRDLITSMLTRAGFRFQEFLLSP 134 (250)
Q Consensus 90 i~~~~~P~~i~~ENV~~~~~-----------------------------------~~~~~~i~~~L~~~GY~v~~~il~a 134 (250)
++.- -.+++.+.+.+-.. ....+.+.+.|++.||.........
T Consensus 138 Lkpg--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~ 215 (234)
T 3dtn_A 138 LKES--GIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKY 215 (234)
T ss_dssp EEEE--EEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cCCC--cEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeeee
Confidence 6431 25666654432110 0133567788999999988777777
Q ss_pred CCCC
Q psy3543 135 TQFG 138 (250)
Q Consensus 135 ~~~G 138 (250)
..||
T Consensus 216 ~~~~ 219 (234)
T 3dtn_A 216 YQFA 219 (234)
T ss_dssp TTEE
T ss_pred ccee
Confidence 6664
No 37
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=89.68 E-value=1.5 Score=37.14 Aligned_cols=98 Identities=13% Similarity=0.012 Sum_probs=61.3
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLI 87 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~ 87 (250)
-|.++|+++.|.+.-+.|. .+..++++|+.++ +. ...+|++++.||. + ...++..++
T Consensus 145 ~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~---~~~~D~Vi~d~p~-------------~-~~~~l~~~~ 206 (272)
T 3a27_A 145 LVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL---KDVADRVIMGYVH-------------K-THKFLDKTF 206 (272)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC---TTCEEEEEECCCS-------------S-GGGGHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc---cCCceEEEECCcc-------------c-HHHHHHHHH
Confidence 6789999999998888764 2334567888777 33 2268999999994 1 123555566
Q ss_pred HHccccCCCcEEEEccccCCCcchHHHHHHHHHHh-CCCeEEEE
Q psy3543 88 ETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTR-AGFRFQEF 130 (250)
Q Consensus 88 ~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~-~GY~v~~~ 130 (250)
+.++. . -.+++..+...-.....+...++.+.+ .||.+...
T Consensus 207 ~~Lkp-g-G~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (272)
T 3a27_A 207 EFLKD-R-GVIHYHETVAEKIMYERPIERLKFYAEKNGYKLIDY 248 (272)
T ss_dssp HHEEE-E-EEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEEEE
T ss_pred HHcCC-C-CEEEEEEcCccccccccHHHHHHHHHHHhCCeeEEe
Confidence 66542 1 255555665432222456666666665 57777643
No 38
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=89.13 E-value=0.59 Score=39.65 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=37.1
Q ss_pred EEEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccc-cCCCCcEEEeCCCCchhhhcCC
Q psy3543 12 EVVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEI-NAMSPDVILMSPPCQPFTRTGL 71 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~-~~~~~Dll~~gpPCQ~fS~ag~ 71 (250)
..|.|+|+++.+.+..+.|. ++..++++|+.++..... ....+|+++..+||.++....+
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~ 174 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDK 174 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC-------
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCccccc
Confidence 36889999999999888873 233455677766543100 1226899999999998765543
No 39
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=89.13 E-value=1.5 Score=35.64 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=72.7
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccc
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPA 92 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~ 92 (250)
.|.++|+++.+.+..+.|.++..++.+|+.+..+-.+ ...+|+++..+ +. ..++.++.+++
T Consensus 72 ~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~-~~~fD~v~~~~---------------~~-~~~l~~~~~~L-- 132 (226)
T 3m33_A 72 RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGL-GAPFGLIVSRR---------------GP-TSVILRLPELA-- 132 (226)
T ss_dssp EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTC-CCCEEEEEEES---------------CC-SGGGGGHHHHE--
T ss_pred EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcC-CCCEEEEEeCC---------------CH-HHHHHHHHHHc--
Confidence 5789999999999999998877777888853322111 23689998761 22 23445555554
Q ss_pred cCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEc-------------------------------cCCCCccc
Q psy3543 93 IPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLS-------------------------------PTQFGVPN 141 (250)
Q Consensus 93 ~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~-------------------------------a~~~GvPq 141 (250)
+ |--.++ -+.+.. ....+.+.|++.||.+...... ..-=|.|-
T Consensus 133 -k-pgG~l~-~~~~~~---~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~g~~~ 206 (226)
T 3m33_A 133 -A-PDAHFL-YVGPRL---NVPEVPERLAAVGWDIVAEDHVSVLAHAPTWEDWQMRGEFMGKLARRADWDAEATVRGMPY 206 (226)
T ss_dssp -E-EEEEEE-EEESSS---CCTHHHHHHHHTTCEEEEEEEEEEEEEECSHHHHHHHHHHHTSCCCHHHHHHHCBTTBEEE
T ss_pred -C-CCcEEE-EeCCcC---CHHHHHHHHHHCCCeEEEEEeeeecccCcCHHHHhhhHHhhhhhhcccccccccCCCCceE
Confidence 4 665665 222222 3456777888889876432211 11235677
Q ss_pred cCceEEEEEEeCCC
Q psy3543 142 SRTRYYLIAKRSPA 155 (250)
Q Consensus 142 ~R~R~~lva~~~~~ 155 (250)
..+|.+++|...+.
T Consensus 207 ~~~~~~~la~~~~~ 220 (226)
T 3m33_A 207 REERHLVLARQLGV 220 (226)
T ss_dssp EEEEEEEEEECC--
T ss_pred eeeeEEEEEeccch
Confidence 77888888876554
No 40
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=88.92 E-value=0.28 Score=40.33 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=41.0
Q ss_pred EEEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcC
Q psy3543 12 EVVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTG 70 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag 70 (250)
..|.++|+++.+.+..+.|.. ...++++|+.++.+ ...+|++++.|||.......
T Consensus 101 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~~~~~ 161 (241)
T 3gdh_A 101 MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS----FLKADVVFLSPPWGGPDYAT 161 (241)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG----GCCCSEEEECCCCSSGGGGG
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc----cCCCCEEEECCCcCCcchhh
Confidence 467899999999988887752 33456777776652 23799999999999877543
No 41
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=88.59 E-value=0.29 Score=44.35 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=61.9
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCC----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
+.+ |.++|+++.+.+.-+.|.. ...+.++|+.++... +.. .+|+++..|||-.-|.. ...+. ...+..
T Consensus 236 ga~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~-~~~-~fD~Ii~dpP~f~~~~~----~~~~~-~~~~~~ 307 (393)
T 4dmg_A 236 GAY-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRG-LEG-PFHHVLLDPPTLVKRPE----ELPAM-KRHLVD 307 (393)
T ss_dssp TCE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHT-CCC-CEEEEEECCCCCCSSGG----GHHHH-HHHHHH
T ss_pred CCe-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHH-hcC-CCCEEEECCCcCCCCHH----HHHHH-HHHHHH
Confidence 366 9999999999988887742 222446666654322 233 48999999998221111 11110 112223
Q ss_pred HHH-HccccCCC--cEEEEccccCCCcchHHHHHHHHHHhCCCeEE
Q psy3543 86 LIE-TIPAIPSL--QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQ 128 (250)
Q Consensus 86 ~~~-ii~~~~~P--~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~ 128 (250)
+++ .++.++ | .+++..+..........+.+.+.+.+.|..+.
T Consensus 308 ll~~a~~~Lk-pGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~ 352 (393)
T 4dmg_A 308 LVREALRLLA-EEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLR 352 (393)
T ss_dssp HHHHHHHTEE-EEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 222 233344 6 45557777665444455566677777775543
No 42
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=88.39 E-value=10 Score=31.97 Aligned_cols=128 Identities=10% Similarity=0.087 Sum_probs=74.1
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC---------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP---------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~---------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
..-|.++|+|+.+.+.-+.|++ ...++.+|..+.... . ...+|+++..+|- ++.. ..... ...
T Consensus 99 ~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~-~-~~~fD~Ii~d~~~-~~~~---~~~l~--~~~ 170 (275)
T 1iy9_A 99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK-S-ENQYDVIMVDSTE-PVGP---AVNLF--TKG 170 (275)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-C-CSCEEEEEESCSS-CCSC---CCCCS--TTH
T ss_pred CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh-C-CCCeeEEEECCCC-CCCc---chhhh--HHH
Confidence 5678899999999999988873 223456676553221 1 2268999998874 2211 11111 123
Q ss_pred HHHHHHHHccccCCCcEEEEccc-cCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeC
Q psy3543 82 ALSYLIETIPAIPSLQCLLLENV-KGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~i~~ENV-~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~ 153 (250)
.+..+.+.+ + |.-+++=|. ..+...+.+..+.+.|++..-.+......-..| | ...-.|++|+++
T Consensus 171 ~~~~~~~~L---~-pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~--~-~g~w~~~~ask~ 236 (275)
T 1iy9_A 171 FYAGIAKAL---K-EDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTY--P-SGLWTFTIGSKK 236 (275)
T ss_dssp HHHHHHHHE---E-EEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTS--G-GGCEEEEEEESS
T ss_pred HHHHHHHhc---C-CCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcc--c-CcceEEEEeeCC
Confidence 444454444 4 654444443 333445678888899988844444333322222 1 346788888865
No 43
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=88.21 E-value=5.7 Score=31.43 Aligned_cols=120 Identities=13% Similarity=0.074 Sum_probs=70.1
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLI 87 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~ 87 (250)
.+.++|+++.+.+..+.+. +...++.+|+.++. ++...+|+++....-..+ .+. ..++.++.
T Consensus 64 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~---------~~~-~~~l~~~~ 130 (219)
T 3dh0_A 64 KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP---LPDNTVDFIFMAFTFHEL---------SEP-LKFLEELK 130 (219)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS---SCSSCEEEEEEESCGGGC---------SSH-HHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC---CCCCCeeEEEeehhhhhc---------CCH-HHHHHHHH
Confidence 6789999999887777664 33445667776653 233368999976442221 222 34666666
Q ss_pred HHccccCCCcEEEEccccCCC-------cchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 88 ETIPAIPSLQCLLLENVKGFE-------GSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 88 ~ii~~~~~P~~i~~ENV~~~~-------~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
++++.- -.+++.+-...-. ..-..+.+.+.|++.||.+....-.. ...+++++.+...
T Consensus 131 ~~Lkpg--G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~--------~~~~~~~~~k~~~ 195 (219)
T 3dh0_A 131 RVAKPF--AYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVG--------KYCFGVYAMIVKQ 195 (219)
T ss_dssp HHEEEE--EEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEET--------TTEEEEEEECC--
T ss_pred HHhCCC--eEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeC--------CceEEEEEEeccc
Confidence 666531 2555555333221 11246788899999999976543211 1356666665543
No 44
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=88.08 E-value=3.9 Score=33.15 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=64.3
Q ss_pred EEEEEeCcHHHHH----HHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHH
Q psy3543 13 VVTAIDINTSANS----VYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIE 88 (250)
Q Consensus 13 ~v~a~did~~a~~----~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ 88 (250)
.|.++|+++.+.+ ..+.| ++..++.+|+.+...-......+|+++..+| ..+....++.++.+
T Consensus 104 ~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~------------~~~~~~~~~~~~~~ 170 (233)
T 2ipx_A 104 LVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADVA------------QPDQTRIVALNAHT 170 (233)
T ss_dssp EEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECCC------------CTTHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcCC------------CccHHHHHHHHHHH
Confidence 5789999976543 33333 4445667888764321222236899999776 11222234455655
Q ss_pred HccccCCC-cEEEEccccC----CCc--chHHHHHHHHHHhCCCeEEEEE-EccCCCCccccCceEEEEEEeC
Q psy3543 89 TIPAIPSL-QCLLLENVKG----FEG--SRSRDLITSMLTRAGFRFQEFL-LSPTQFGVPNSRTRYYLIAKRS 153 (250)
Q Consensus 89 ii~~~~~P-~~i~~ENV~~----~~~--~~~~~~i~~~L~~~GY~v~~~i-l~a~~~GvPq~R~R~~lva~~~ 153 (250)
+++ | -.++++ +.. ... ...+..-++.|++.||.+...+ ++ |..+..++++|.++
T Consensus 171 ~Lk----pgG~l~i~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~------~~~~~~~~v~~~~~ 232 (233)
T 2ipx_A 171 FLR----NGGHFVIS-IKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLE------PYERDHAVVVGVYR 232 (233)
T ss_dssp HEE----EEEEEEEE-EEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECT------TTSSSEEEEEEEEC
T ss_pred HcC----CCeEEEEE-EcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecC------CccCCcEEEEEEeC
Confidence 554 4 334443 221 100 1123333688889999987633 32 34456788888764
No 45
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=87.93 E-value=1.7 Score=37.40 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=71.3
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC---------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP---------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~---------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
..-|.++|+|+.+.+.-+.+++ ...++.+|+.+.... .....+|+++..++-. +. ...... ...
T Consensus 119 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~~~~fDvIi~d~~~~-~~---~~~~l~--~~~ 191 (304)
T 3bwc_A 119 VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ-TPDNTYDVVIIDTTDP-AG---PASKLF--GEA 191 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS-SCTTCEEEEEEECC-------------C--CHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh-ccCCceeEEEECCCCc-cc---cchhhh--HHH
Confidence 4578899999999998888773 233556776655321 1123689999976642 11 000000 112
Q ss_pred HHHHHHHHccccCCCcEEEEcccc-CCCcchHHHHHHHHHHhCCCeEE-EEEEccCCCCccccCceEEEEEEeCC
Q psy3543 82 ALSYLIETIPAIPSLQCLLLENVK-GFEGSRSRDLITSMLTRAGFRFQ-EFLLSPTQFGVPNSRTRYYLIAKRSP 154 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~i~~ENV~-~~~~~~~~~~i~~~L~~~GY~v~-~~il~a~~~GvPq~R~R~~lva~~~~ 154 (250)
.+..+.+++ + |.-+++=+.. .+........+.+.|++.||... ........| ..-...|++|+++.
T Consensus 192 ~l~~~~~~L---k-pgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~y---p~g~w~f~~as~~~ 259 (304)
T 3bwc_A 192 FYKDVLRIL---K-PDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTY---PCGSIGTLVCSKKA 259 (304)
T ss_dssp HHHHHHHHE---E-EEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTS---TTSCCEEEEEESSS
T ss_pred HHHHHHHhc---C-CCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccc---cCcceEEEEEeCCc
Confidence 344444444 4 6433332222 23344567889999999999643 332322223 12346788888764
No 46
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=87.66 E-value=6.3 Score=33.67 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=70.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC---------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP---------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~---------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
..-|.++|+|+.+.+.-+.|++ ...++.+|..+.... . ...+|+++..+|+..... .... ....
T Consensus 114 ~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~-~~~fD~Ii~d~~~~~~~~---~~~l--~~~~ 186 (296)
T 1inl_A 114 VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK-F-KNEFDVIIIDSTDPTAGQ---GGHL--FTEE 186 (296)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-C-SSCEEEEEEEC-------------C--CSHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh-C-CCCceEEEEcCCCcccCc---hhhh--hHHH
Confidence 4578899999999999888873 223456666554222 1 226899999888741211 1111 1123
Q ss_pred HHHHHHHHccccCCCcE-EEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeC
Q psy3543 82 ALSYLIETIPAIPSLQC-LLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~-i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~ 153 (250)
.+..+.+++ + |.- ++++....+.....+..+++.|++..-.+......-..| | ...-.|++|+++
T Consensus 187 ~l~~~~~~L---k-pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~--p-~g~~~f~~as~~ 252 (296)
T 1inl_A 187 FYQACYDAL---K-EDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTY--P-SGMWSYTFASKG 252 (296)
T ss_dssp HHHHHHHHE---E-EEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTS--T-TSEEEEEEEESS
T ss_pred HHHHHHHhc---C-CCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCcc--C-CCceEEEEecCC
Confidence 444444444 4 643 444433333445567788888888744444433332223 2 456778888865
No 47
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=87.65 E-value=0.62 Score=43.03 Aligned_cols=111 Identities=9% Similarity=0.098 Sum_probs=62.4
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCC------CCCch--
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKD------IADAR-- 79 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~------~~d~r-- 79 (250)
.|.|+|+++.+.+..+.|.. +..+.+.|..++.. .++ ..+|+++.-+||.+.....+... ..+..
T Consensus 132 ~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~-~~~-~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l 209 (456)
T 3m4x_A 132 LLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVP-HFS-GFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYC 209 (456)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHH-HHT-TCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhh-hcc-ccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHH
Confidence 67899999999998888742 23344566665532 122 26899999999988766543211 01100
Q ss_pred hhHHHHHHH-HccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCe
Q psy3543 80 CTALSYLIE-TIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFR 126 (250)
Q Consensus 80 ~~l~~~~~~-ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~ 126 (250)
..+-..+++ ..+.++ |--.++=....+...+.-+.+...|++.|+.
T Consensus 210 ~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs~~~eEne~vv~~~l~~~~~~ 256 (456)
T 3m4x_A 210 QKRQQEILSSAIKMLK-NKGQLIYSTCTFAPEENEEIISWLVENYPVT 256 (456)
T ss_dssp HHHHHHHHHHHHHTEE-EEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred HHHHHHHHHHHHHhcC-CCcEEEEEEeecccccCHHHHHHHHHhCCCE
Confidence 011123332 223345 7555543333343334455666777787743
No 48
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=87.61 E-value=0.65 Score=41.45 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=62.7
Q ss_pred cEEEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccc-cCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEI-NAMSPDVILMSPPCQPFTRTGLQKDIADARCTALS 84 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~-~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~ 84 (250)
..-|.++|+++.+.+.-+.|. .+..++.+|+.++..... ....+|++++.||+-..|...... ....-..++.
T Consensus 231 ~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~-~~~~~~~~l~ 309 (382)
T 1wxx_A 231 FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVER-AYRAYKEVNL 309 (382)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHH-HHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHH-HHHHHHHHHH
Confidence 356899999999998888874 223456677766543211 123689999999974433211000 0000112333
Q ss_pred HHHHHccccCCC--cEEEEccccCCCcchHHHHHHHHHHhCCCeEE
Q psy3543 85 YLIETIPAIPSL--QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQ 128 (250)
Q Consensus 85 ~~~~ii~~~~~P--~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~ 128 (250)
..++ .++ | .+++..|...+......+.+.+.+.+.|..+.
T Consensus 310 ~~~~---~Lk-pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 351 (382)
T 1wxx_A 310 RAIK---LLK-EGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLR 351 (382)
T ss_dssp HHHH---TEE-EEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHH---hcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3333 344 5 45555665555433345555667778876553
No 49
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=87.33 E-value=2.9 Score=33.43 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=62.0
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCch----hhHH
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADAR----CTAL 83 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r----~~l~ 83 (250)
-+.++|+++.+.+.-+.|. ++..++.+|+.++. +.++...+|+++..+|.. +... ....| ..++
T Consensus 67 ~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~D~i~~~~~~~-~~~~-----~~~~~~~~~~~~l 139 (214)
T 1yzh_A 67 NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT-DYFEDGEIDRLYLNFSDP-WPKK-----RHEKRRLTYKTFL 139 (214)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG-GTSCTTCCSEEEEESCCC-CCSG-----GGGGGSTTSHHHH
T ss_pred CEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-hhcCCCCCCEEEEECCCC-cccc-----chhhhccCCHHHH
Confidence 5789999999988777764 34446678887643 223334689999998743 2111 11122 2244
Q ss_pred HHHHHHccccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEE
Q psy3543 84 SYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLL 132 (250)
Q Consensus 84 ~~~~~ii~~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il 132 (250)
..+.+++ + | -.++++-- .......+++.|++.||.+.....
T Consensus 140 ~~~~~~L---k-pgG~l~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~ 181 (214)
T 1yzh_A 140 DTFKRIL---P-ENGEIHFKTD----NRGLFEYSLVSFSQYGMKLNGVWL 181 (214)
T ss_dssp HHHHHHS---C-TTCEEEEEES----CHHHHHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHc---C-CCcEEEEEeC----CHHHHHHHHHHHHHCCCeeeeccc
Confidence 4444444 4 4 34444321 123467788889999998765543
No 50
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=87.28 E-value=0.8 Score=38.63 Aligned_cols=107 Identities=20% Similarity=0.178 Sum_probs=62.2
Q ss_pred EEEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCC--CCCchh----
Q psy3543 12 EVVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKD--IADARC---- 80 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~--~~d~r~---- 80 (250)
..+.++|+++.+.+.-+.|. +...++++|+.+.. +...+|+++..|||.+.+......+ ...++.
T Consensus 134 ~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~ 209 (276)
T 2b3t_A 134 CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVA 209 (276)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc----ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcC
Confidence 36789999999999888875 23345667776532 1236899999999987643110000 011211
Q ss_pred -----hHHHHHHHH-ccccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCCeEE
Q psy3543 81 -----TALSYLIET-IPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQ 128 (250)
Q Consensus 81 -----~l~~~~~~i-i~~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~ 128 (250)
..+..+++. .+.++ | -++++|. + ....+.+.+.|++.||...
T Consensus 210 ~~~g~~~~~~~l~~~~~~Lk-pgG~l~~~~--~---~~~~~~~~~~l~~~Gf~~v 258 (276)
T 2b3t_A 210 ADSGMADIVHIIEQSRNALV-SGGFLLLEH--G---WQQGEAVRQAFILAGYHDV 258 (276)
T ss_dssp HHHHTHHHHHHHHHHGGGEE-EEEEEEEEC--C---SSCHHHHHHHHHHTTCTTC
T ss_pred CCcHHHHHHHHHHHHHHhcC-CCCEEEEEE--C---chHHHHHHHHHHHCCCcEE
Confidence 123344433 33445 6 3556653 2 1235667778888999754
No 51
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=86.86 E-value=1.9 Score=38.35 Aligned_cols=100 Identities=11% Similarity=0.120 Sum_probs=60.0
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
-+.++|+++.+.+.-+.|.. ...+.++|+.++... ...+|+++..||. |.+.+.......++..+
T Consensus 243 ~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~---~~~fD~Ii~npPy------g~r~~~~~~~~~ly~~~ 313 (373)
T 3tm4_A 243 EIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY---VDSVDFAISNLPY------GLKIGKKSMIPDLYMKF 313 (373)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT---CSCEEEEEEECCC------C------CCHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc---cCCcCEEEECCCC------CcccCcchhHHHHHHHH
Confidence 57899999999888888752 234567777776432 1268999999994 33322222333455555
Q ss_pred HHHccc-cCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEE
Q psy3543 87 IETIPA-IPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 87 ~~ii~~-~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
++.+.. +. +..+++-- ....+.+.+.+.||.+...
T Consensus 314 ~~~l~r~l~-g~~~~i~~--------~~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 314 FNELAKVLE-KRGVFITT--------EKKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp HHHHHHHEE-EEEEEEES--------CHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHcC-CeEEEEEC--------CHHHHHHHHHHcCCEEEEE
Confidence 554443 23 55555532 2344556778889887543
No 52
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=86.86 E-value=2.2 Score=35.00 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=46.8
Q ss_pred HhhcCCCcEEEEEEeCcHHHHHHHHHhCC--CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 4 LSNHAFSLEVVTAIDINTSANSVYKHNFP--RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 4 L~~~g~~~~~v~a~did~~a~~~y~~N~~--~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
|.+.| ...+.++|+++.+.+.-+.+.. ...++.+|+.++. ++...+|++++......+ .+. ..
T Consensus 62 l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~---------~~~-~~ 126 (253)
T 3g5l_A 62 AAEHG--AKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIA---IEPDAYNVVLSSLALHYI---------ASF-DD 126 (253)
T ss_dssp HHHTT--CSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCC---CCTTCEEEEEEESCGGGC---------SCH-HH
T ss_pred HHHcC--CCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCC---CCCCCeEEEEEchhhhhh---------hhH-HH
Confidence 44444 4478899999999999888875 3335677776654 223378999987542222 222 34
Q ss_pred HHHHHHHHcc
Q psy3543 82 ALSYLIETIP 91 (250)
Q Consensus 82 l~~~~~~ii~ 91 (250)
++.++.++++
T Consensus 127 ~l~~~~~~Lk 136 (253)
T 3g5l_A 127 ICKKVYINLK 136 (253)
T ss_dssp HHHHHHHHEE
T ss_pred HHHHHHHHcC
Confidence 6666666664
No 53
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=86.77 E-value=2.8 Score=34.15 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=74.8
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCC---CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPR---TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLI 87 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~---~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~ 87 (250)
...+.++|+++.+.+.-+.+... ..++.+|+.++. ++...+|+++....-..++ .+....++.++.
T Consensus 116 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~--------~~~~~~~l~~~~ 184 (254)
T 1xtp_A 116 YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT---LPPNTYDLIVIQWTAIYLT--------DADFVKFFKHCQ 184 (254)
T ss_dssp CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC---CCSSCEEEEEEESCGGGSC--------HHHHHHHHHHHH
T ss_pred cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCC---CCCCCeEEEEEcchhhhCC--------HHHHHHHHHHHH
Confidence 44688999999999999888753 334566776653 2333689999754321111 012234566666
Q ss_pred HHccccCCCcEEEEccccCCCc----------chHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEE
Q psy3543 88 ETIPAIPSLQCLLLENVKGFEG----------SRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAK 151 (250)
Q Consensus 88 ~ii~~~~~P~~i~~ENV~~~~~----------~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~ 151 (250)
++++.- -.+++.+|+..-.. ....+.+.+.|++.||.+...... -+.|.....+.+++.
T Consensus 185 ~~Lkpg--G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~---~~~~~~~~~~~~~~~ 253 (254)
T 1xtp_A 185 QALTPN--GYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ---EEWPTDLFPLKMYAL 253 (254)
T ss_dssp HHEEEE--EEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC---TTCCTTSCCEEEEEE
T ss_pred HhcCCC--eEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeec---CCCCchhheEEEEEe
Confidence 666431 25666676432111 124578889999999998765433 235666666666554
No 54
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=86.66 E-value=4 Score=35.53 Aligned_cols=129 Identities=10% Similarity=0.064 Sum_probs=73.0
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCC---------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPR---------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~---------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
...+.++|+|+.+.+.-+.|++. ..++.+|+.+.... . ...+|+++..++.. + +..... -...
T Consensus 140 ~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~-~-~~~fDvIi~d~~~p-~---~~~~~l--~~~~ 211 (321)
T 2pt6_A 140 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN-V-TNTYDVIIVDSSDP-I---GPAETL--FNQN 211 (321)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH-C-CSCEEEEEEECCCS-S---SGGGGG--SSHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh-c-CCCceEEEECCcCC-C---Ccchhh--hHHH
Confidence 45788999999999999999864 12345555443211 1 22689999877531 1 100000 0012
Q ss_pred HHHHHHHHccccCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCC
Q psy3543 82 ALSYLIETIPAIPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 154 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~ 154 (250)
.+..+.+. ++ |. +++++....+...+.+..+.+.|++..-.+......-..|. .-.-.|++|+++.
T Consensus 212 ~l~~~~~~---Lk-pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~---~g~w~f~~as~~~ 278 (321)
T 2pt6_A 212 FYEKIYNA---LK-PNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYP---CGCIGILCCSKTD 278 (321)
T ss_dssp HHHHHHHH---EE-EEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSG---GGEEEEEEEESST
T ss_pred HHHHHHHh---cC-CCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEecccc---CceEEEEEeeCCC
Confidence 33333333 34 64 55555544555556788888999888555554443333331 1235688887654
No 55
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=86.59 E-value=6 Score=32.23 Aligned_cols=134 Identities=11% Similarity=0.179 Sum_probs=71.5
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCC-----------------------------------CccccCcccccc-ccccCCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRT-----------------------------------NLRGRNIQSFSI-EEINAMSP 54 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~-----------------------------------~~~~~dI~~~~~-~~~~~~~~ 54 (250)
..-|.++|+++.+.+..+.+.... .+...|+.+..+ .......+
T Consensus 79 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~f 158 (265)
T 2i62_A 79 FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPA 158 (265)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCE
T ss_pred cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCc
Confidence 457899999999988877765432 345567766543 12211368
Q ss_pred cEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccccCCC--cEEEEcccc-CC---------CcchHHHHHHHHHHh
Q psy3543 55 DVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSL--QCLLLENVK-GF---------EGSRSRDLITSMLTR 122 (250)
Q Consensus 55 Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~~~~P--~~i~~ENV~-~~---------~~~~~~~~i~~~L~~ 122 (250)
|++++..--..++ .... ....++.++.+++ + | .+++.+-.. .+ ...-..+.+.+.|++
T Consensus 159 D~v~~~~~l~~~~-----~~~~-~~~~~l~~~~~~L---k-pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 228 (265)
T 2i62_A 159 DCLLSTLCLDAAC-----PDLP-AYRTALRNLGSLL---K-PGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEE 228 (265)
T ss_dssp EEEEEESCHHHHC-----SSHH-HHHHHHHHHHTTE---E-EEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHH
T ss_pred cEEEEhhhhhhhc-----CChH-HHHHHHHHHHhhC---C-CCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHH
Confidence 9998764311111 0001 1123444444443 4 5 333332111 00 001135588899999
Q ss_pred CCCeEEEEEEccCCCC--ccccCceEEEEEEeCC
Q psy3543 123 AGFRFQEFLLSPTQFG--VPNSRTRYYLIAKRSP 154 (250)
Q Consensus 123 ~GY~v~~~il~a~~~G--vPq~R~R~~lva~~~~ 154 (250)
.||.+.........|. .......++++|.+..
T Consensus 229 aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~ 262 (265)
T 2i62_A 229 AGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPG 262 (265)
T ss_dssp TTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC
T ss_pred CCCEEEEEEEecccCCccccccceEEEEEecccc
Confidence 9999877665554443 2333456677776554
No 56
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=86.44 E-value=7 Score=30.73 Aligned_cols=97 Identities=10% Similarity=0.094 Sum_probs=59.2
Q ss_pred EEEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
..+.++|+++.+.+.-+.|. +...++.+|+.+.... .. .+|+++.+.+.. ....++.++
T Consensus 65 ~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~--~~D~i~~~~~~~-------------~~~~~l~~~ 128 (204)
T 3e05_A 65 GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD-LP--DPDRVFIGGSGG-------------MLEEIIDAV 128 (204)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT-SC--CCSEEEESCCTT-------------CHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc-CC--CCCEEEECCCCc-------------CHHHHHHHH
Confidence 36789999999988887764 2333456666443221 12 689999887642 122455566
Q ss_pred HHHccccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEE
Q psy3543 87 IETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLL 132 (250)
Q Consensus 87 ~~ii~~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il 132 (250)
.++++ | -.+++.... ......+.+.|++.||.+....+
T Consensus 129 ~~~Lk----pgG~l~~~~~~----~~~~~~~~~~l~~~g~~~~~~~~ 167 (204)
T 3e05_A 129 DRRLK----SEGVIVLNAVT----LDTLTKAVEFLEDHGYMVEVACV 167 (204)
T ss_dssp HHHCC----TTCEEEEEECB----HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhcC----CCeEEEEEecc----cccHHHHHHHHHHCCCceeEEEE
Confidence 66554 4 233332211 24677888999999996554433
No 57
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=86.33 E-value=1 Score=40.16 Aligned_cols=129 Identities=13% Similarity=0.119 Sum_probs=69.1
Q ss_pred EEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCC---------------CCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQK---------------DIA 76 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~---------------~~~ 76 (250)
..+.|+|+++.+.+.- +...++++|+.+.... ..+|++++-||.-.....+... ...
T Consensus 65 ~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~~~----~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (421)
T 2ih2_A 65 YRFVGVEIDPKALDLP----PWAEGILADFLLWEPG----EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTW 136 (421)
T ss_dssp SEEEEEESCTTTCCCC----TTEEEEESCGGGCCCS----SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTC
T ss_pred CeEEEEECCHHHHHhC----CCCcEEeCChhhcCcc----CCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcc
Confidence 4688999999887543 2334567787765432 2789999999986554321100 000
Q ss_pred CchhhHHHHHHH-HccccCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCC-CccccCceEEEEEEeC
Q psy3543 77 DARCTALSYLIE-TIPAIPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQF-GVPNSRTRYYLIAKRS 153 (250)
Q Consensus 77 d~r~~l~~~~~~-ii~~~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~-GvPq~R~R~~lva~~~ 153 (250)
+.+..++..+++ +++.++ |. .+++.--.+++.....+.+.+.|.+.|+ .....+. .-| |.+. .+++++..+.
T Consensus 137 ~~~~~~~~~fl~~~~~~Lk-~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~-~~i~~l~-~~F~~~~~--~~~il~~~k~ 211 (421)
T 2ih2_A 137 KGKYNLYGAFLEKAVRLLK-PGGVLVFVVPATWLVLEDFALLREFLAREGK-TSVYYLG-EVFPQKKV--SAVVIRFQKS 211 (421)
T ss_dssp CTTCCHHHHHHHHHHHHEE-EEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE-EEEEEEE-SCSTTCCC--CEEEEEEESS
T ss_pred cCCccHHHHHHHHHHHHhC-CCCEEEEEEChHHhcCccHHHHHHHHHhcCC-eEEEECC-CCCCCCCc--cEEEEEEEeC
Confidence 112223334443 233344 42 2233333345555566778888888887 4444454 444 2332 4455555443
No 58
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=86.03 E-value=3.2 Score=38.43 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=41.1
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCC
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~ 71 (250)
.|.|+|+++.+.+..+.|. .+..+++.|..++... .. ..+|+++.-+||.+.....+
T Consensus 144 ~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~-~~-~~fD~Il~D~PcSg~G~~~~ 205 (479)
T 2frx_A 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA-VP-EMFDAILLDAPCSGEGVVRK 205 (479)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH-ST-TCEEEEEEECCCCCGGGGGT
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh-cc-ccCCEEEECCCcCCcccccC
Confidence 6889999999999888874 2334556777665321 22 26899999999998766544
No 59
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=85.69 E-value=1.6 Score=37.33 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=38.7
Q ss_pred EEEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCCchhhh
Q psy3543 12 EVVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTR 68 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ 68 (250)
..|.++|+++.+.+.-+.|... ..++++|+.+..+..+. .+|+++..|||-+.+.
T Consensus 147 ~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~--~~D~IvsnPPyi~~~~ 207 (284)
T 1nv8_A 147 AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFA--SIEMILSNPPYVKSSA 207 (284)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTT--TCCEEEECCCCBCGGG
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccC--CCCEEEEcCCCCCccc
Confidence 3678999999999988887421 33567777664322111 2399999999998776
No 60
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=85.16 E-value=4 Score=35.58 Aligned_cols=128 Identities=11% Similarity=0.051 Sum_probs=67.1
Q ss_pred EEEEEEeCcHHHHHHHHHhCC----CCCccccCccccccccccCCCCcEEEeCCCCchhhhc---CC-CCCCCCchhhHH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRT---GL-QKDIADARCTAL 83 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~a---g~-~~~~~d~r~~l~ 83 (250)
..++++|+++.+.+.-+.|.. ...+.++|..+.. ....+|++++.||..-+... .+ ..+..+......
T Consensus 160 ~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~----~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~ 235 (344)
T 2f8l_A 160 VHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL----LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAH 235 (344)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC----CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHH
T ss_pred ceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc----ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHH
Confidence 468999999999888877732 2334556654321 12368999999996332110 00 001111111121
Q ss_pred HH-HHHHccccCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCc
Q psy3543 84 SY-LIETIPAIPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRT 144 (250)
Q Consensus 84 ~~-~~~ii~~~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~ 144 (250)
.. +.++++.++ |. .+++..-.++..+.....+.+.|.+.|+......+...-|+-.....
T Consensus 236 ~~~l~~~~~~Lk-~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~lp~~~F~~~~~~~ 297 (344)
T 2f8l_A 236 FLFIEQGMRYTK-PGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLPETLFKSEQARK 297 (344)
T ss_dssp HHHHHHHHHTEE-EEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECCGGGSCC-CCCE
T ss_pred HHHHHHHHHHhC-CCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeCChhhccCCCCce
Confidence 11 222334445 53 33333334566666678888888887764433334444565433333
No 61
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=85.10 E-value=0.7 Score=45.01 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=38.0
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC-------CCCccccCccccccccccCCCCcEEEeCCCCchhhh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP-------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTR 68 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~-------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ 68 (250)
...|.++|+++.+.+.-+.|.. ...++++|+.++.... ...+|+++.-|||-.-|.
T Consensus 562 a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~--~~~fD~Ii~DPP~f~~~~ 624 (703)
T 3v97_A 562 ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA--NEQFDLIFIDPPTFSNSK 624 (703)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC--CCCEEEEEECCCSBC---
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc--CCCccEEEECCccccCCc
Confidence 5678999999999998888741 2235567776643321 236899999999854443
No 62
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=84.96 E-value=2.6 Score=38.94 Aligned_cols=112 Identities=11% Similarity=0.142 Sum_probs=62.6
Q ss_pred EEEEEeCcHHHHHHHHHhCC----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCC----Cch----h
Q psy3543 13 VVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIA----DAR----C 80 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~----d~r----~ 80 (250)
.|.|+|+++.+.+..+.|.. ...++++|..++... .. ..+|+++.-+||.+.....+..... ... .
T Consensus 128 ~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~-~~-~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~ 205 (464)
T 3m6w_A 128 LLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEA-FG-TYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMA 205 (464)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHH-HC-SCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhh-cc-ccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHH
Confidence 67899999999998888742 134456776665321 22 2689999999998877665432211 000 1
Q ss_pred hHHHHHHH-HccccCCCcEEEEccccCCCcchHHHHHHHHHHhC-CCeE
Q psy3543 81 TALSYLIE-TIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRA-GFRF 127 (250)
Q Consensus 81 ~l~~~~~~-ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~-GY~v 127 (250)
.+...+++ +.+.++ |--.++=....+...+.-+.+...|++. ++.+
T Consensus 206 ~~Q~~iL~~a~~~Lk-pGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l 253 (464)
T 3m6w_A 206 EVQKALLAQASRLLG-PGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRL 253 (464)
T ss_dssp HHHHHHHHHHHTTEE-EEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHHhcC-CCcEEEEEeccCchhcCHHHHHHHHHHCCCcEE
Confidence 12233333 333445 7544443333333333445555556665 3433
No 63
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=84.93 E-value=5 Score=31.49 Aligned_cols=106 Identities=14% Similarity=0.182 Sum_probs=62.6
Q ss_pred EEEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
..+.++|+++.+.+.-+.+.. ...++.+|+.++. ++...+|++++......+ .+. ..++.+
T Consensus 67 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~---------~~~-~~~l~~ 133 (219)
T 3dlc_A 67 FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP---IEDNYADLIVSRGSVFFW---------EDV-ATAFRE 133 (219)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS---SCTTCEEEEEEESCGGGC---------SCH-HHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC---CCcccccEEEECchHhhc---------cCH-HHHHHH
Confidence 367899999998887777732 2335567776654 333368999987653332 222 346666
Q ss_pred HHHHccccCCCcEEEEccccCC------------------------CcchHHHHHHHHHHhCCCeEEEEEE
Q psy3543 86 LIETIPAIPSLQCLLLENVKGF------------------------EGSRSRDLITSMLTRAGFRFQEFLL 132 (250)
Q Consensus 86 ~~~ii~~~~~P~~i~~ENV~~~------------------------~~~~~~~~i~~~L~~~GY~v~~~il 132 (250)
+.++++.- -.+++.+....- ......+.+.+.|++.||.......
T Consensus 134 ~~~~L~pg--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 202 (219)
T 3dlc_A 134 IYRILKSG--GKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIIL 202 (219)
T ss_dssp HHHHEEEE--EEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEEE
T ss_pred HHHhCCCC--CEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEEe
Confidence 66666421 144444322110 0011336788899999998765543
No 64
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=84.32 E-value=0.86 Score=39.73 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=38.2
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~ 71 (250)
.|+|+|+++.+.+..+.|.. +..++++|..++....-....+|.++.-+||.+.-...+
T Consensus 129 ~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r 192 (309)
T 2b9e_A 129 KIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSR 192 (309)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCcc
Confidence 68999999999998888742 334556777766532110026899999999998765544
No 65
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=84.30 E-value=4.4 Score=31.67 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=34.8
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
-+.++|+++.+.+.-+.|.. ...++++|+.++.. .....+|+++..+|-
T Consensus 49 ~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~v~~~~~~ 103 (197)
T 3eey_A 49 RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK--YIDCPVKAVMFNLGY 103 (197)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG--TCCSCEEEEEEEESB
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh--hccCCceEEEEcCCc
Confidence 67899999999888877742 23456778766642 112378999998876
No 66
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=84.02 E-value=8.8 Score=30.21 Aligned_cols=104 Identities=10% Similarity=-0.011 Sum_probs=62.2
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccc
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPA 92 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~ 92 (250)
-+.++|+++.+.+..+.+. ...+..+|+.++. ....+|++++...-..+. .+....++.++.++++.
T Consensus 67 ~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~--------~~~~~~~l~~~~~~Lkp 133 (211)
T 3e23_A 67 DVDATDGSPELAAEASRRL-GRPVRTMLFHQLD----AIDAYDAVWAHACLLHVP--------RDELADVLKLIWRALKP 133 (211)
T ss_dssp EEEEEESCHHHHHHHHHHH-TSCCEECCGGGCC----CCSCEEEEEECSCGGGSC--------HHHHHHHHHHHHHHEEE
T ss_pred eEEEECCCHHHHHHHHHhc-CCceEEeeeccCC----CCCcEEEEEecCchhhcC--------HHHHHHHHHHHHHhcCC
Confidence 5679999999999888886 3345678887775 223789999865422221 11223466666666642
Q ss_pred cCCCcEEEEccccCC---------CcchHHHHHHHHHHhCC-CeEEEEE
Q psy3543 93 IPSLQCLLLENVKGF---------EGSRSRDLITSMLTRAG-FRFQEFL 131 (250)
Q Consensus 93 ~~~P~~i~~ENV~~~---------~~~~~~~~i~~~L~~~G-Y~v~~~i 131 (250)
-- .+++......- ...-..+.+.+.|++.| |.+....
T Consensus 134 gG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 134 GG--LFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp EE--EEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred Cc--EEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 11 22222111110 00125678899999999 9986654
No 67
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=83.79 E-value=3.7 Score=34.32 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=57.0
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.+.++|+++.+.+.-+.|.. ...++.+|+.+. ++...+|+++..+|+. ..++.++
T Consensus 139 ~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~D~V~~~~~~~---------------~~~l~~~ 199 (277)
T 1o54_A 139 KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG----FDEKDVDALFLDVPDP---------------WNYIDKC 199 (277)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC----CSCCSEEEEEECCSCG---------------GGTHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc----ccCCccCEEEECCcCH---------------HHHHHHH
Confidence 57899999999888887752 223456666554 3323689999987743 2455666
Q ss_pred HHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEE
Q psy3543 87 IETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQE 129 (250)
Q Consensus 87 ~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~ 129 (250)
.++++.- -.+++.... ......+++.|++.||....
T Consensus 200 ~~~L~pg--G~l~~~~~~-----~~~~~~~~~~l~~~gf~~~~ 235 (277)
T 1o54_A 200 WEALKGG--GRFATVCPT-----TNQVQETLKKLQELPFIRIE 235 (277)
T ss_dssp HHHEEEE--EEEEEEESS-----HHHHHHHHHHHHHSSEEEEE
T ss_pred HHHcCCC--CEEEEEeCC-----HHHHHHHHHHHHHCCCceeE
Confidence 6665421 133333321 13466788888899987543
No 68
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=83.60 E-value=8.3 Score=31.19 Aligned_cols=123 Identities=17% Similarity=0.134 Sum_probs=71.7
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCC-----CccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCc-hhhHHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRT-----NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADA-RCTALS 84 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~-----~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~-r~~l~~ 84 (250)
...+.++|+++.+.+.-+.+++.. .++..|+.++.. +...+|++++...-.. ..++ ...++.
T Consensus 102 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~l~~---------~~~~~~~~~l~ 169 (241)
T 2ex4_A 102 FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP---EPDSYDVIWIQWVIGH---------LTDQHLAEFLR 169 (241)
T ss_dssp CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC---CSSCEEEEEEESCGGG---------SCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC---CCCCEEEEEEcchhhh---------CCHHHHHHHHH
Confidence 446889999999999988887542 244566655532 2225899987632111 1122 224555
Q ss_pred HHHHHccccCCCcEEEEccccCC------Cc---chHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEE
Q psy3543 85 YLIETIPAIPSLQCLLLENVKGF------EG---SRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150 (250)
Q Consensus 85 ~~~~ii~~~~~P~~i~~ENV~~~------~~---~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva 150 (250)
++.++++.- -.+++.+++..- .. ....+.+.+.|++.||.+...... -+.|..-.-+.+++
T Consensus 170 ~~~~~Lkpg--G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~---~~~~~~~~~v~~~~ 239 (241)
T 2ex4_A 170 RCKGSLRPN--GIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ---ENLPDEIYHVYSFA 239 (241)
T ss_dssp HHHHHEEEE--EEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC---CSCCTTSCEEEEEE
T ss_pred HHHHhcCCC--eEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec---CCCcchhhhhhhhe
Confidence 666665431 256666765431 00 125788999999999998765433 23444434444433
No 69
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=83.55 E-value=0.26 Score=44.20 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=61.6
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccc-cCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEI-NAMSPDVILMSPPCQPFTRTGLQKDIADARCTAL 83 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~-~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~ 83 (250)
..-|.++|+++.+.+.-+.|.. ...++.+|+.++..... ....+|++++.||+-..|... ..+.. ..+
T Consensus 240 ~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~----~~~~~-~~~ 314 (396)
T 2as0_A 240 ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKD----LKAGL-RAY 314 (396)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGG----HHHHH-HHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHH----HHHHH-HHH
Confidence 5678999999999988888753 22345667666533211 123689999999964433211 00000 111
Q ss_pred HHH-HHHccccCCC--cEEEEccccCCCcchHHHHHHHHHHhCCCeE
Q psy3543 84 SYL-IETIPAIPSL--QCLLLENVKGFEGSRSRDLITSMLTRAGFRF 127 (250)
Q Consensus 84 ~~~-~~ii~~~~~P--~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v 127 (250)
..+ .++++.++ | .+++..+-..+......+.+.+.+...|..+
T Consensus 315 ~~~l~~~~~~Lk-pgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 360 (396)
T 2as0_A 315 FNVNFAGLNLVK-DGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFL 360 (396)
T ss_dssp HHHHHHHHTTEE-EEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHhcC-CCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 222 23444455 6 3555566555543334455556777777554
No 70
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=83.39 E-value=0.71 Score=36.37 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=37.7
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
...|.++|+++.+.+..+.|.. ...++++|+.++... ++...+|++++.||.
T Consensus 67 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 67 AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA-GTTSPVDLVLADPPY 123 (189)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH-CCSSCCSEEEECCCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh-ccCCCccEEEECCCC
Confidence 5678999999999988888752 334567787766432 222379999999993
No 71
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=83.33 E-value=5.3 Score=36.36 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=42.2
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCC
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQ 72 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~ 72 (250)
.|.|+|+++...+..+.|. ++..++++|+.++.. .++...+|+++.-+||.+.....+.
T Consensus 286 ~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~-~~~~~~fD~Vl~D~Pcsg~g~~~~~ 349 (450)
T 2yxl_A 286 KIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPE-IIGEEVADKVLLDAPCTSSGTIGKN 349 (450)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSS-SSCSSCEEEEEEECCCCCGGGTTTS
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcch-hhccCCCCEEEEcCCCCCCeeeccC
Confidence 6789999999988888773 233455677766542 2332368999999999988766543
No 72
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=82.72 E-value=16 Score=30.17 Aligned_cols=121 Identities=9% Similarity=0.034 Sum_probs=67.7
Q ss_pred EEEEEeCcHHHHHHH---HHhCCCCCccccCccccccc-cccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHH
Q psy3543 13 VVTAIDINTSANSVY---KHNFPRTNLRGRNIQSFSIE-EINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIE 88 (250)
Q Consensus 13 ~v~a~did~~a~~~y---~~N~~~~~~~~~dI~~~~~~-~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ 88 (250)
.|+|+|+++...... ....++...+.+|++..... .+.. .+|+++...+- .+....+.....+
T Consensus 103 ~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~-~~D~I~~d~a~------------~~~~~il~~~~~~ 169 (232)
T 3id6_C 103 KAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVE-NVDVLYVDIAQ------------PDQTDIAIYNAKF 169 (232)
T ss_dssp EEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCC-CEEEEEECCCC------------TTHHHHHHHHHHH
T ss_pred EEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhcccc-ceEEEEecCCC------------hhHHHHHHHHHHH
Confidence 688999999764322 11224444567888765331 2222 68999887551 2222222222222
Q ss_pred HccccCCCcEEEEccccC----CCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeC
Q psy3543 89 TIPAIPSLQCLLLENVKG----FEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153 (250)
Q Consensus 89 ii~~~~~P~~i~~ENV~~----~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~ 153 (250)
+++.= =.+++..--.- +...+.++..+..|++.||.+...+ +. -|..|.-++++|.++
T Consensus 170 ~LkpG--G~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~----~l-~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 170 FLKVN--GDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQII----NL-DPYDKDHAIVLSKYK 231 (232)
T ss_dssp HEEEE--EEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEE----EC-TTTCSSCEEEEEEEC
T ss_pred hCCCC--eEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEe----cc-CCCcCceEEEEEEeC
Confidence 54321 14444321111 1113456778899999998887654 22 477889999999875
No 73
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=82.48 E-value=2.2 Score=37.34 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=35.5
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
.+.++|+|+.+.+.-+.|.. ...+.++|+.++.... ..+|+++.-||+
T Consensus 230 ~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~---~~~D~Ii~npPy 282 (354)
T 3tma_A 230 PVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF---PEVDRILANPPH 282 (354)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC---CCCSEEEECCCS
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc---CCCCEEEECCCC
Confidence 46899999999999888853 2345667777664322 147999999997
No 74
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=81.76 E-value=9 Score=32.43 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=71.7
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCC---------CccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRT---------NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~---------~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
..-+.++|+|+...+.-+.+++.. .++.+|+.+..... ...+|+++..++.. + + +...
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~Ii~d~~~~-~---~-------~~~~ 168 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV--TNTYDVIIVDSSDP-I---G-------PAET 168 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC--CSCEEEEEEECCCT-T---T-------GGGG
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC--CCCceEEEEcCCCC-C---C-------cchh
Confidence 457889999999999999988642 24456665542221 22689999876532 1 1 1112
Q ss_pred HH-HHHHHHc-cccCCCcEEEEccccC-CCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeC
Q psy3543 82 AL-SYLIETI-PAIPSLQCLLLENVKG-FEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153 (250)
Q Consensus 82 l~-~~~~~ii-~~~~~P~~i~~ENV~~-~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~ 153 (250)
++ .++++.+ +.++ |.-+++=|... +.....+..+.+.|++.--.+......-..|.- -.--|++|+++
T Consensus 169 l~~~~~l~~~~~~L~-pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~---g~~g~~~~s~~ 239 (283)
T 2i7c_A 169 LFNQNFYEKIYNALK-PNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPC---GCIGILCCSKT 239 (283)
T ss_dssp GSSHHHHHHHHHHEE-EEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGG---GEEEEEEEESS
T ss_pred hhHHHHHHHHHHhcC-CCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCC---CcEEEEEEeCC
Confidence 22 2333322 2345 76565555443 334456778888888774444444333333422 22568888866
No 75
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=81.53 E-value=7.5 Score=35.13 Aligned_cols=96 Identities=11% Similarity=0.100 Sum_probs=59.2
Q ss_pred EEEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccc-cccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIE-EINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~-~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
.-|.++|+++.+.+.-+.|. .+..++.+|+.+.... .+....+|+++..||..+ .. +
T Consensus 309 ~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g---------~~--------~ 371 (433)
T 1uwv_A 309 ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG---------AA--------G 371 (433)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC---------CH--------H
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCCCcc---------HH--------H
Confidence 46789999999988887764 2334567787764322 233336899999999421 10 2
Q ss_pred HHHHccccCCCcEEEE-ccccCCCcchHHHHHHHHHHhCCCeEEEE
Q psy3543 86 LIETIPAIPSLQCLLL-ENVKGFEGSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 86 ~~~ii~~~~~P~~i~~-ENV~~~~~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
+++.+...+ |..++. ..- ..++..-+..|.+.||.+...
T Consensus 372 ~~~~l~~~~-p~~ivyvsc~-----p~tlard~~~l~~~Gy~~~~~ 411 (433)
T 1uwv_A 372 VMQQIIKLE-PIRIVYVSCN-----PATLARDSEALLKAGYTIARL 411 (433)
T ss_dssp HHHHHHHHC-CSEEEEEESC-----HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhcC-CCeEEEEECC-----hHHHHhhHHHHHHCCcEEEEE
Confidence 334444466 755542 211 234555567778889999763
No 76
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=80.77 E-value=0.78 Score=36.86 Aligned_cols=50 Identities=16% Similarity=0.351 Sum_probs=36.0
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
...|.++|+++.+.+..+.|.. ...++++|+.+..+. ....+|+++..||
T Consensus 77 ~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~--~~~~fD~V~~~~p 131 (202)
T 2fpo_A 77 AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ--KGTPHNIVFVDPP 131 (202)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS--CCCCEEEEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh--cCCCCCEEEECCC
Confidence 4578999999999999888752 334567777664322 1226899999999
No 77
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=80.64 E-value=16 Score=29.08 Aligned_cols=44 Identities=7% Similarity=0.244 Sum_probs=35.0
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeC
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMS 60 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~g 60 (250)
.+.++|+++.+.+.-+.++++..++.+|+.++.. + ..+|+++.+
T Consensus 64 ~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~---~-~~~D~v~~~ 107 (239)
T 3bxo_A 64 DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL---G-RKFSAVVSM 107 (239)
T ss_dssp EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC---S-SCEEEEEEC
T ss_pred cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc---C-CCCcEEEEc
Confidence 5788999999999999998877777888887643 2 268999953
No 78
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=80.60 E-value=17 Score=28.96 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=31.6
Q ss_pred EEEEEEeCcHHHHHHHHHhC----CCCCccccCccccccccccCCCCcEEEeCC
Q psy3543 12 EVVTAIDINTSANSVYKHNF----PRTNLRGRNIQSFSIEEINAMSPDVILMSP 61 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gp 61 (250)
..+.++|+++.+.+.-+.+. +...++.+|+.++.. + ..+|+++...
T Consensus 55 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~---~-~~fD~v~~~~ 104 (243)
T 3d2l_A 55 YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELEL---P-EPVDAITILC 104 (243)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCC---S-SCEEEEEECT
T ss_pred CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCC---C-CCcCEEEEeC
Confidence 36789999998887777664 234456777776542 2 2689998764
No 79
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=80.42 E-value=0.96 Score=36.26 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=36.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC-------CCCccccCccccccccccCCC-CcEEEeCCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP-------RTNLRGRNIQSFSIEEINAMS-PDVILMSPPC 63 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~-------~~~~~~~dI~~~~~~~~~~~~-~Dll~~gpPC 63 (250)
...|.++|+++.+.+..+.|.. ...++.+|+.++... +.... +|++++.||.
T Consensus 76 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~~~~~~ 135 (201)
T 2ift_A 76 AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ-PQNQPHFDVVFLDPPF 135 (201)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS-CCSSCCEEEEEECCCS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh-hccCCCCCEEEECCCC
Confidence 4578999999999998888752 334556777655322 11226 8999999993
No 80
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=80.04 E-value=5.3 Score=30.55 Aligned_cols=97 Identities=16% Similarity=0.118 Sum_probs=56.4
Q ss_pred EEEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
..+.++|+++.+.+..+.|.. ...+...|+.+. ..+. ..+|+++.+.+.. +. ..++..
T Consensus 56 ~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~--~~~D~v~~~~~~~------------~~-~~~l~~ 119 (192)
T 1l3i_A 56 RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-LCKI--PDIDIAVVGGSGG------------EL-QEILRI 119 (192)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH-HTTS--CCEEEEEESCCTT------------CH-HHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh-cccC--CCCCEEEECCchH------------HH-HHHHHH
Confidence 467899999999888777642 222345565441 1111 2689999887641 11 234444
Q ss_pred HHHHccccCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEE
Q psy3543 86 LIETIPAIPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLL 132 (250)
Q Consensus 86 ~~~ii~~~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il 132 (250)
+.+++ + |. .+++. .. .......+.+.|++.||.+....+
T Consensus 120 ~~~~l---~-~gG~l~~~-~~---~~~~~~~~~~~l~~~g~~~~~~~~ 159 (192)
T 1l3i_A 120 IKDKL---K-PGGRIIVT-AI---LLETKFEAMECLRDLGFDVNITEL 159 (192)
T ss_dssp HHHTE---E-EEEEEEEE-EC---BHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHhc---C-CCcEEEEE-ec---CcchHHHHHHHHHHCCCceEEEEE
Confidence 44443 4 54 33332 11 134677888999999997765443
No 81
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=79.95 E-value=1.1 Score=35.55 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=56.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
...+.++|+++.+.+.-+.|.. +..+..+|+.+.. ...+|+++..+|.+. +..
T Consensus 83 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----~~~fD~i~~~~~~~~-----------------~~~ 140 (205)
T 3grz_A 83 AKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV-----DGKFDLIVANILAEI-----------------LLD 140 (205)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC-----CSCEEEEEEESCHHH-----------------HHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC-----CCCceEEEECCcHHH-----------------HHH
Confidence 5578899999999887777643 2334566665432 237899999876421 122
Q ss_pred HHHH-ccccCCCc--EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE
Q psy3543 86 LIET-IPAIPSLQ--CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 86 ~~~i-i~~~~~P~--~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
+++- .+.++ |. +++.+... .....+.+.|++.||.+....
T Consensus 141 ~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 141 LIPQLDSHLN-EDGQVIFSGIDY-----LQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp HGGGSGGGEE-EEEEEEEEEEEG-----GGHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhcC-CCCEEEEEecCc-----ccHHHHHHHHHHcCCceEEee
Confidence 2222 22334 53 33322222 257778889999999886543
No 82
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=79.57 E-value=7.3 Score=31.68 Aligned_cols=91 Identities=7% Similarity=-0.019 Sum_probs=57.3
Q ss_pred EEEEEeCcHHHHHHHHHhC------CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF------PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~------~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.+.++|+++.+.+.-+.|+ +...+..+|+.+.. ++...+|+++..+|. + ..++.++
T Consensus 123 ~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~~~~~~D~v~~~~~~--------------~-~~~l~~~ 184 (258)
T 2pwy_A 123 LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE---LEEAAYDGVALDLME--------------P-WKVLEKA 184 (258)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC---CCTTCEEEEEEESSC--------------G-GGGHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC---CCCCCcCEEEECCcC--------------H-HHHHHHH
Confidence 6789999999888777764 22334566776552 333368999986552 1 2456666
Q ss_pred HHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEE
Q psy3543 87 IETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQ 128 (250)
Q Consensus 87 ~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~ 128 (250)
.++++.- -.+++.+... .....+++.|++.||...
T Consensus 185 ~~~L~~g--G~l~~~~~~~-----~~~~~~~~~l~~~gf~~~ 219 (258)
T 2pwy_A 185 ALALKPD--RFLVAYLPNI-----TQVLELVRAAEAHPFRLE 219 (258)
T ss_dssp HHHEEEE--EEEEEEESCH-----HHHHHHHHHHTTTTEEEE
T ss_pred HHhCCCC--CEEEEEeCCH-----HHHHHHHHHHHHCCCceE
Confidence 6666421 2444444322 356788888999998753
No 83
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=78.94 E-value=9.6 Score=30.52 Aligned_cols=108 Identities=6% Similarity=0.010 Sum_probs=60.0
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLI 87 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~ 87 (250)
.+.|+|+++.+.+.-+.|. ++..++.+|+.++. ..++...+|.++..+|+.-.......+.. ....++.++.
T Consensus 64 ~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-~~~~~~~~d~v~~~~~~p~~~~~~~~~rl--~~~~~l~~~~ 140 (213)
T 2fca_A 64 NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-DVFEPGEVKRVYLNFSDPWPKKRHEKRRL--TYSHFLKKYE 140 (213)
T ss_dssp EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-HHCCTTSCCEEEEESCCCCCSGGGGGGST--TSHHHHHHHH
T ss_pred CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-hhcCcCCcCEEEEECCCCCcCcccccccc--CcHHHHHHHH
Confidence 5789999999988777652 34456678887753 22444468999887775322110000000 0123444455
Q ss_pred HHccccCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE
Q psy3543 88 ETIPAIPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 88 ~ii~~~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
+++ + |- .++++- .....+..+++.|++.||......
T Consensus 141 ~~L---k-pgG~l~~~t----d~~~~~~~~~~~~~~~g~~~~~~~ 177 (213)
T 2fca_A 141 EVM---G-KGGSIHFKT----DNRGLFEYSLKSFSEYGLLLTYVS 177 (213)
T ss_dssp HHH---T-TSCEEEEEE----SCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHc---C-CCCEEEEEe----CCHHHHHHHHHHHHHCCCcccccc
Confidence 554 3 53 333331 012346677888888898776543
No 84
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=78.71 E-value=17 Score=30.10 Aligned_cols=120 Identities=7% Similarity=-0.056 Sum_probs=68.4
Q ss_pred EEEEEeCcHHHHHHHHHhCCCC---CccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPRT---NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIET 89 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~---~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~i 89 (250)
.|+|+|+++...+....+.... ..+..|..+..........+|+++...+.. +.....+.++.++
T Consensus 104 ~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~------------~~~~~~l~~~~r~ 171 (233)
T 4df3_A 104 RIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQP------------EQAAIVVRNARFF 171 (233)
T ss_dssp EEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCT------------THHHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEeccCC------------hhHHHHHHHHHHh
Confidence 6799999999998888876442 234556655432222223689888766532 1222355566666
Q ss_pred ccccCCCcEEEEccccCCC----cchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEE
Q psy3543 90 IPAIPSLQCLLLENVKGFE----GSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAK 151 (250)
Q Consensus 90 i~~~~~P~~i~~ENV~~~~----~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~ 151 (250)
++.-- ++++........ ....+...++.|++.||.+.+.+ +- .|-.|.-+.++|.
T Consensus 172 LKpGG--~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i-~L----~pf~~~H~lv~~~ 230 (233)
T 4df3_A 172 LRDGG--YMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVV-HL----DPFDRDHAMIYAV 230 (233)
T ss_dssp EEEEE--EEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEE-EC----TTTSTTEEEEEEC
T ss_pred ccCCC--EEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEE-cc----CCCCCceEEEEEE
Confidence 54321 444432222111 12467788899999999987654 21 2334455666653
No 85
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=78.51 E-value=4.4 Score=36.34 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=47.9
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----C-CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----R-TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~-~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.+.++|+|+.+.+.-+.|.. + ..+.++|+.++... . .+|+++.-|| -|.+.+....-..|+..+
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~---~-~fD~Iv~NPP------YG~rl~~~~~l~~ly~~l 327 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN---K-INGVLISNPP------YGERLLDDKAVDILYNEM 327 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC---C-CSCEEEECCC------CTTTTSCHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc---C-CcCEEEECCc------hhhccCCHHHHHHHHHHH
Confidence 37899999999999888842 1 23456777776542 2 6899999999 354433223334577777
Q ss_pred HHHccc
Q psy3543 87 IETIPA 92 (250)
Q Consensus 87 ~~ii~~ 92 (250)
.+.++.
T Consensus 328 g~~lk~ 333 (384)
T 3ldg_A 328 GETFAP 333 (384)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 777776
No 86
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=78.27 E-value=11 Score=29.99 Aligned_cols=117 Identities=9% Similarity=0.028 Sum_probs=62.4
Q ss_pred EEEEEeCcHHHHHHHHHhC---CCCCccccCcccccc-ccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSI-EEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIE 88 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~---~~~~~~~~dI~~~~~-~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ 88 (250)
.|.++|+++.+.+....|. ++..++.+|+.+... ..+.. .+|+++..+| ..+....++.++.+
T Consensus 100 ~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~D~v~~~~~------------~~~~~~~~l~~~~~ 166 (227)
T 1g8a_A 100 KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVP-KVDVIFEDVA------------QPTQAKILIDNAEV 166 (227)
T ss_dssp EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCC-CEEEEEECCC------------STTHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccC-CceEEEECCC------------CHhHHHHHHHHHHH
Confidence 5789999998776665553 344456778776432 12222 6899998776 11222234666666
Q ss_pred HccccCCCcEEEEcccc--CCCc----chHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEe
Q psy3543 89 TIPAIPSLQCLLLENVK--GFEG----SRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKR 152 (250)
Q Consensus 89 ii~~~~~P~~i~~ENV~--~~~~----~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~ 152 (250)
+++.-- .+++. +. .... ......-+..|.+. |.+.... + . -|..+.+++++|.+
T Consensus 167 ~LkpgG--~l~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~-f~~~~~~-~---~-~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 167 YLKRGG--YGMIA--VKSRSIDVTKEPEQVFREVERELSEY-FEVIERL-N---L-EPYEKDHALFVVRK 226 (227)
T ss_dssp HEEEEE--EEEEE--EEGGGTCTTSCHHHHHHHHHHHHHTT-SEEEEEE-E---C-TTTSSSEEEEEEEC
T ss_pred hcCCCC--EEEEE--EecCCCCCCCChhhhhHHHHHHHHhh-ceeeeEe-c---c-CcccCCCEEEEEEe
Confidence 665311 33333 21 1111 12233334445555 6654332 2 2 35566788888865
No 87
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=78.21 E-value=19 Score=28.60 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=43.1
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCC--CccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRT--NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIE 88 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~--~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ 88 (250)
...+.++|+++.+.+.-+.+.... .+..+|+.++. ++...+|+++....-..+ .+ ...++.++.+
T Consensus 66 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~---------~~-~~~~l~~~~~ 132 (243)
T 3bkw_A 66 ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLH---LPQDSFDLAYSSLALHYV---------ED-VARLFRTVHQ 132 (243)
T ss_dssp CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCC---CCTTCEEEEEEESCGGGC---------SC-HHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhcc---CCCCCceEEEEecccccc---------ch-HHHHHHHHHH
Confidence 436789999999999998887642 34566776653 333368999986543221 12 2345666666
Q ss_pred Hcc
Q psy3543 89 TIP 91 (250)
Q Consensus 89 ii~ 91 (250)
+++
T Consensus 133 ~L~ 135 (243)
T 3bkw_A 133 ALS 135 (243)
T ss_dssp HEE
T ss_pred hcC
Confidence 654
No 88
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=77.70 E-value=3.5 Score=32.35 Aligned_cols=129 Identities=17% Similarity=0.134 Sum_probs=55.7
Q ss_pred EEEEEeCcHHHHHHHHHhCCC----CCccccCccccccc-cccCCCCcEEEeCCCCchhhhcCCCCC---CCCch-----
Q psy3543 13 VVTAIDINTSANSVYKHNFPR----TNLRGRNIQSFSIE-EINAMSPDVILMSPPCQPFTRTGLQKD---IADAR----- 79 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~----~~~~~~dI~~~~~~-~~~~~~~Dll~~gpPCQ~fS~ag~~~~---~~d~r----- 79 (250)
-+.++|+++.+.+.-+.|... ..++++|+.+..+. ......+|++++.||+-.......-.. ..++.
T Consensus 56 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (215)
T 4dzr_A 56 SVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDG 135 (215)
T ss_dssp EEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC----------------------
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccC
Confidence 578999999999888888653 33456666652221 011137999999999865543321100 00111
Q ss_pred ----hhHHHHHHHHc-cccCCCcE--EEEccccCCCcchHHHHHHHHHH--hCCCeEEEEEEccCCCCccccCceEEEEE
Q psy3543 80 ----CTALSYLIETI-PAIPSLQC--LLLENVKGFEGSRSRDLITSMLT--RAGFRFQEFLLSPTQFGVPNSRTRYYLIA 150 (250)
Q Consensus 80 ----~~l~~~~~~ii-~~~~~P~~--i~~ENV~~~~~~~~~~~i~~~L~--~~GY~v~~~il~a~~~GvPq~R~R~~lva 150 (250)
-..+..+++-+ +.++ |.- ++++-. ......+.+.|+ +.||......-+. ..+.|++ ++
T Consensus 136 ~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~-----~~~~~~~~~~l~~~~~gf~~~~~~~~~------~~~~r~~-~~ 202 (215)
T 4dzr_A 136 GEDGLQFYRRMAALPPYVLA-RGRAGVFLEVG-----HNQADEVARLFAPWRERGFRVRKVKDL------RGIDRVI-AV 202 (215)
T ss_dssp --CTTHHHHHHHTCCGGGBC-SSSEEEEEECT-----TSCHHHHHHHTGGGGGGTEECCEEECT------TSCEEEE-EE
T ss_pred CCcHHHHHHHHHHHHHHHhc-CCCeEEEEEEC-----CccHHHHHHHHHHhhcCCceEEEEEec------CCCEEEE-EE
Confidence 11234444433 3345 632 455432 224566777788 8888654433322 2346654 55
Q ss_pred EeCC
Q psy3543 151 KRSP 154 (250)
Q Consensus 151 ~~~~ 154 (250)
.++.
T Consensus 203 ~~~~ 206 (215)
T 4dzr_A 203 TREP 206 (215)
T ss_dssp EECC
T ss_pred EEcC
Confidence 5554
No 89
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=77.33 E-value=3.6 Score=36.36 Aligned_cols=96 Identities=11% Similarity=0.115 Sum_probs=56.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccc-------------cCCCCcEEEeCCCCchhhhcCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEI-------------NAMSPDVILMSPPCQPFTRTGLQ 72 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~-------------~~~~~Dll~~gpPCQ~fS~ag~~ 72 (250)
+.-|.++|+++.|.+..+.|. .+..++.+|+.++.+... ....+|+++..||..+
T Consensus 235 ~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g------- 307 (369)
T 3bt7_A 235 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG------- 307 (369)
T ss_dssp SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC-------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccc-------
Confidence 357899999999999888774 233456777766532211 1125899999999641
Q ss_pred CCCCCchhhHHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEE
Q psy3543 73 KDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 73 ~~~~d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
+..++++++. +..+++++..-+ .++..-+..|.+ ||.+...
T Consensus 308 ---------~~~~~~~~l~--~~g~ivyvsc~p-----~t~ard~~~l~~-~y~~~~~ 348 (369)
T 3bt7_A 308 ---------LDSETEKMVQ--AYPRILYISCNP-----ETLCKNLETLSQ-THKVERL 348 (369)
T ss_dssp ---------CCHHHHHHHT--TSSEEEEEESCH-----HHHHHHHHHHHH-HEEEEEE
T ss_pred ---------cHHHHHHHHh--CCCEEEEEECCH-----HHHHHHHHHHhh-CcEEEEE
Confidence 2234666665 313555554332 233333344543 7877644
No 90
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=77.11 E-value=19 Score=28.56 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=57.9
Q ss_pred EEEEEeCcHHHHHHHHHhC-----C-CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF-----P-RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~-~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
-|.++|+++.+.+.-+.|. + ...++.+|+.+... ..+ .+|+++.+... +.. ++.++
T Consensus 79 ~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~--~~D~v~~~~~~-------------~~~--~l~~~ 140 (204)
T 3njr_A 79 RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA-DLP--LPEAVFIGGGG-------------SQA--LYDRL 140 (204)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT-TSC--CCSEEEECSCC-------------CHH--HHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc-cCC--CCCEEEECCcc-------------cHH--HHHHH
Confidence 5789999999988877763 3 33456777766322 222 68999865411 222 55556
Q ss_pred HHHccccCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE
Q psy3543 87 IETIPAIPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 87 ~~ii~~~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
.+++ + |. .+++..+ .......+.+.|++.||.+....
T Consensus 141 ~~~L---k-pgG~lv~~~~----~~~~~~~~~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 141 WEWL---A-PGTRIVANAV----TLESETLLTQLHARHGGQLLRID 178 (204)
T ss_dssp HHHS---C-TTCEEEEEEC----SHHHHHHHHHHHHHHCSEEEEEE
T ss_pred HHhc---C-CCcEEEEEec----CcccHHHHHHHHHhCCCcEEEEE
Confidence 5555 4 53 3333322 22567888899999998876543
No 91
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=77.01 E-value=5.7 Score=32.48 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=57.2
Q ss_pred EEEEEEeCcHHHHHHHHHhC-----CC-CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNF-----PR-TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~-----~~-~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
..+.++|+++.+.+.-+.|+ ++ ..+..+|+.+. ++...+|+++..+|+. ...+.+
T Consensus 119 ~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~D~v~~~~~~~---------------~~~l~~ 179 (255)
T 3mb5_A 119 GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG----IEEENVDHVILDLPQP---------------ERVVEH 179 (255)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC----CCCCSEEEEEECSSCG---------------GGGHHH
T ss_pred eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc----cCCCCcCEEEECCCCH---------------HHHHHH
Confidence 36789999999888777774 23 34566777644 3333689999977733 245666
Q ss_pred HHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCC--CeE
Q psy3543 86 LIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAG--FRF 127 (250)
Q Consensus 86 ~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~G--Y~v 127 (250)
+.++++.- -.+++.+ +. ......+.+.|++.| |..
T Consensus 180 ~~~~L~~g--G~l~~~~--~~---~~~~~~~~~~l~~~g~~f~~ 216 (255)
T 3mb5_A 180 AAKALKPG--GFFVAYT--PC---SNQVMRLHEKLREFKDYFMK 216 (255)
T ss_dssp HHHHEEEE--EEEEEEE--SS---HHHHHHHHHHHHHTGGGBSC
T ss_pred HHHHcCCC--CEEEEEE--CC---HHHHHHHHHHHHHcCCCccc
Confidence 66666532 1344333 22 235677888899999 653
No 92
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=77.01 E-value=6.6 Score=30.85 Aligned_cols=105 Identities=12% Similarity=0.032 Sum_probs=62.0
Q ss_pred EEEEEeCcHHHHHHHHHhC-CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCc-hhhHHHHHHHHc
Q psy3543 13 VVTAIDINTSANSVYKHNF-PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADA-RCTALSYLIETI 90 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~-r~~l~~~~~~ii 90 (250)
-+.++|+++.+.+.-+.+. ++..++.+|+.++ ++...+|+++++.-... ..++ ...++.++.+++
T Consensus 70 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~~~~l~~---------~~~~~~~~~l~~~~~~L 136 (218)
T 3ou2_A 70 RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW----TPDRQWDAVFFAHWLAH---------VPDDRFEAFWESVRSAV 136 (218)
T ss_dssp EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC----CCSSCEEEEEEESCGGG---------SCHHHHHHHHHHHHHHE
T ss_pred eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC----CCCCceeEEEEechhhc---------CCHHHHHHHHHHHHHHc
Confidence 5678999999988877643 3444567787766 23337899997642111 1222 244666666666
Q ss_pred cccCCCcEEEEccccC---------------C---C-c---------chHHHHHHHHHHhCCCeEEEEEE
Q psy3543 91 PAIPSLQCLLLENVKG---------------F---E-G---------SRSRDLITSMLTRAGFRFQEFLL 132 (250)
Q Consensus 91 ~~~~~P~~i~~ENV~~---------------~---~-~---------~~~~~~i~~~L~~~GY~v~~~il 132 (250)
+.- -.+++.+..+. + . . ......+.+.|++.|+.+.....
T Consensus 137 ~pg--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 204 (218)
T 3ou2_A 137 APG--GVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDEV 204 (218)
T ss_dssp EEE--EEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred CCC--eEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEeeec
Confidence 431 13444443221 0 0 0 01457888999999999766544
No 93
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=76.52 E-value=22 Score=26.68 Aligned_cols=115 Identities=18% Similarity=0.181 Sum_probs=68.3
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccc
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPA 92 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~ 92 (250)
.+.++|+++.+.+..+.+.+...+...| ..++...+|+++....-..+ .+. ..++.++.++++.
T Consensus 41 ~v~~vD~s~~~~~~a~~~~~~v~~~~~d------~~~~~~~~D~v~~~~~l~~~---------~~~-~~~l~~~~~~L~p 104 (170)
T 3i9f_A 41 KLYCIDINVIALKEVKEKFDSVITLSDP------KEIPDNSVDFILFANSFHDM---------DDK-QHVISEVKRILKD 104 (170)
T ss_dssp EEEEECSCHHHHHHHHHHCTTSEEESSG------GGSCTTCEEEEEEESCSTTC---------SCH-HHHHHHHHHHEEE
T ss_pred eEEEEeCCHHHHHHHHHhCCCcEEEeCC------CCCCCCceEEEEEccchhcc---------cCH-HHHHHHHHHhcCC
Confidence 7889999999999999887766666666 22333368999976543222 222 3466666666643
Q ss_pred cCCCcEEEEccccCCCc-------chHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 93 IPSLQCLLLENVKGFEG-------SRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 93 ~~~P~~i~~ENV~~~~~-------~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
- -.+++.+-...-.. .-..+.+.+.|+ ||.+.... ++ ....+.+++.+.+.
T Consensus 105 g--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~----~~----~~~~~~l~~~~~~~ 162 (170)
T 3i9f_A 105 D--GRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRF----NP----TPYHFGLVLKRKTS 162 (170)
T ss_dssp E--EEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEE----CS----STTEEEEEEEECCC
T ss_pred C--CEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEcc----CC----CCceEEEEEecCCC
Confidence 1 14555443332111 113456667676 88765442 22 24557778877765
No 94
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=76.40 E-value=15 Score=34.44 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=60.1
Q ss_pred EEEEEeCcHHHHHHHHHhC---C--C-----CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhH
Q psy3543 13 VVTAIDINTSANSVYKHNF---P--R-----TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTA 82 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~---~--~-----~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l 82 (250)
.++++|+++.+...-+.|. + . ..+.++|.-....... ..+|++++-||.-.......+.+..-+.+..
T Consensus 213 ~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~--~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~ 290 (541)
T 2ar0_A 213 AFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL--PKAHIVATNPPFGSAAGTNITRTFVHPTSNK 290 (541)
T ss_dssp SEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTS--CCEEEEEECCCCTTCSSCCCCSCCSSCCSCH
T ss_pred eEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccccc--cCCeEEEECCCcccccchhhHhhcCCCCCch
Confidence 5899999999988877762 2 1 2344555433222222 2789999999986654332111111111111
Q ss_pred HHH-HHHHccccCCC--cEEEEcccc-CCC-cchHHHHHHHHHHhCCCeEEEEEEccCCC
Q psy3543 83 LSY-LIETIPAIPSL--QCLLLENVK-GFE-GSRSRDLITSMLTRAGFRFQEFLLSPTQF 137 (250)
Q Consensus 83 ~~~-~~~ii~~~~~P--~~i~~ENV~-~~~-~~~~~~~i~~~L~~~GY~v~~~il~a~~~ 137 (250)
... +.++++.++ | ++.++ +| +++ .+.....+.+.|.+.++-.....+...-|
T Consensus 291 ~~~Fl~~~l~~Lk-~gGr~a~V--~p~~~L~~~~~~~~iR~~L~~~~~l~~ii~Lp~~~F 347 (541)
T 2ar0_A 291 QLCFMQHIIETLH-PGGRAAVV--VPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF 347 (541)
T ss_dssp HHHHHHHHHHHEE-EEEEEEEE--EEHHHHHCCTHHHHHHHHHHHHEEEEEEEECCSSCS
T ss_pred HHHHHHHHHHHhC-CCCEEEEE--ecCcceecCcHHHHHHHHHhhcCCEEEEEEcCcCcc
Confidence 111 223444455 5 33433 22 222 23345566666666543222233445455
No 95
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=75.85 E-value=16 Score=30.33 Aligned_cols=90 Identities=12% Similarity=0.152 Sum_probs=55.5
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.+.++|+++.+.+.-+.|.. ...+..+|+.+. ++...+|+++..+| ++ ..++.++
T Consensus 137 ~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~----~~~~~fD~Vi~~~~--------------~~-~~~l~~~ 197 (275)
T 1yb2_A 137 TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF----ISDQMYDAVIADIP--------------DP-WNHVQKI 197 (275)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC----CCSCCEEEEEECCS--------------CG-GGSHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc----CcCCCccEEEEcCc--------------CH-HHHHHHH
Confidence 57899999999888777742 223456676652 22236899998555 11 2355555
Q ss_pred HHHccccCCC--cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEE
Q psy3543 87 IETIPAIPSL--QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 87 ~~ii~~~~~P--~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
.+++ + | .+++..+.. .....+.+.|++.||.....
T Consensus 198 ~~~L---k-pgG~l~i~~~~~-----~~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 198 ASMM---K-PGSVATFYLPNF-----DQSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp HHTE---E-EEEEEEEEESSH-----HHHHHHHHHSGGGTEEEEEE
T ss_pred HHHc---C-CCCEEEEEeCCH-----HHHHHHHHHHHHCCCeEEEE
Confidence 5555 3 5 334333221 24677888899999986544
No 96
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=75.58 E-value=14 Score=31.79 Aligned_cols=127 Identities=15% Similarity=0.129 Sum_probs=74.3
Q ss_pred HhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCC-ccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhH
Q psy3543 4 LSNHAFSLEVVTAIDINTSANSVYKHNFPRTN-LRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTA 82 (250)
Q Consensus 4 L~~~g~~~~~v~a~did~~a~~~y~~N~~~~~-~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l 82 (250)
|.+.| ..-|+|+|+++...+.-..+.+... +-..|++.+.+++++...+|++++..-.. +- ...
T Consensus 103 L~~~g--a~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~------------sl-~~v 167 (291)
T 3hp7_A 103 MLQNG--AKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI------------SL-NLI 167 (291)
T ss_dssp HHHTT--CSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS------------CG-GGT
T ss_pred HHhCC--CCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHh------------hH-HHH
Confidence 44444 5578999999876655334444422 12357777877777653489888643211 11 346
Q ss_pred HHHHHHHccccCCCcEEEE-----c----cc--cCCCcc-----hHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceE
Q psy3543 83 LSYLIETIPAIPSLQCLLL-----E----NV--KGFEGS-----RSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRY 146 (250)
Q Consensus 83 ~~~~~~ii~~~~~P~~i~~-----E----NV--~~~~~~-----~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~ 146 (250)
+.++.++++-= -.++++ | .| .|.+.. ...+.+.+.+++.||.+......+. -|---+++=+
T Consensus 168 L~e~~rvLkpG--G~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi-~g~~gn~e~l 244 (291)
T 3hp7_A 168 LPALAKILVDG--GQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPI-QGGHGNIEFL 244 (291)
T ss_dssp HHHHHHHSCTT--CEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSS-CCGGGCCCEE
T ss_pred HHHHHHHcCcC--CEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCcCHHHH
Confidence 77777777531 255555 1 22 133221 2456788889999999887666664 3444455544
Q ss_pred EE
Q psy3543 147 YL 148 (250)
Q Consensus 147 ~l 148 (250)
+.
T Consensus 245 ~~ 246 (291)
T 3hp7_A 245 AH 246 (291)
T ss_dssp EE
T ss_pred HH
Confidence 33
No 97
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=74.81 E-value=31 Score=28.94 Aligned_cols=126 Identities=12% Similarity=0.078 Sum_probs=67.5
Q ss_pred CcEEEEEEeCcHHHHHHHHHhC----C-----------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCC
Q psy3543 10 SLEVVTAIDINTSANSVYKHNF----P-----------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKD 74 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~----~-----------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~ 74 (250)
+..-+.++|+|+.+.+.-+.|+ + ...++.+|..+.... . ..+|+++..+|+. +. ....
T Consensus 97 ~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~--~-~~fD~Ii~d~~~~-~~---~~~~ 169 (281)
T 1mjf_A 97 DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--N-RGFDVIIADSTDP-VG---PAKV 169 (281)
T ss_dssp CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--C-CCEEEEEEECCCC-C--------
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc--c-CCeeEEEECCCCC-CC---cchh
Confidence 3567889999999999988887 1 112344555443222 2 2689999998863 21 1111
Q ss_pred CCCchhhHHHHHHHHccccCCCcEEEEcccc-CCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccc-cCceEEEEEEe
Q psy3543 75 IADARCTALSYLIETIPAIPSLQCLLLENVK-GFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPN-SRTRYYLIAKR 152 (250)
Q Consensus 75 ~~d~r~~l~~~~~~ii~~~~~P~~i~~ENV~-~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq-~R~R~~lva~~ 152 (250)
.. ....+..+.+++ + |.-+++=|.. -+.....+..+.+.|++..=.+...... +|. ...-.|++|++
T Consensus 170 l~--~~~~l~~~~~~L---~-pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~-----vP~~~g~~~~~~as~ 238 (281)
T 1mjf_A 170 LF--SEEFYRYVYDAL---N-NPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFP-----VIGYASPWAFLVGVK 238 (281)
T ss_dssp TT--SHHHHHHHHHHE---E-EEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEEC-----CTTSSSSEEEEEEEE
T ss_pred hh--HHHHHHHHHHhc---C-CCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEe-----cCCCCceEEEEEeeC
Confidence 10 122344444443 4 6544433332 2223456677777777663233322221 232 34577888887
Q ss_pred C
Q psy3543 153 S 153 (250)
Q Consensus 153 ~ 153 (250)
+
T Consensus 239 ~ 239 (281)
T 1mjf_A 239 G 239 (281)
T ss_dssp S
T ss_pred C
Confidence 6
No 98
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=74.68 E-value=22 Score=27.94 Aligned_cols=128 Identities=19% Similarity=0.198 Sum_probs=72.8
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCC----------ccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCc--hh
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTN----------LRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADA--RC 80 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~----------~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~--r~ 80 (250)
-+.++|+++.+.+..+.+..... ++..|+.++. ++...+|++++......+ .++ +.
T Consensus 54 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~---------~~~~~~~ 121 (235)
T 3sm3_A 54 SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS---FHDSSFDFAVMQAFLTSV---------PDPKERS 121 (235)
T ss_dssp EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC---SCTTCEEEEEEESCGGGC---------CCHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC---CCCCceeEEEEcchhhcC---------CCHHHHH
Confidence 57899999999999988875422 3345555442 223368999986443222 121 22
Q ss_pred hHHHHHHHHccccCCCcEEEEccccCCC-----------------------------------cchHHHHHHHHHHhCCC
Q psy3543 81 TALSYLIETIPAIPSLQCLLLENVKGFE-----------------------------------GSRSRDLITSMLTRAGF 125 (250)
Q Consensus 81 ~l~~~~~~ii~~~~~P~~i~~ENV~~~~-----------------------------------~~~~~~~i~~~L~~~GY 125 (250)
.++.++.++++.- -.+++.+-..... .....+.+.+.|++.||
T Consensus 122 ~~l~~~~~~L~pg--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf 199 (235)
T 3sm3_A 122 RIIKEVFRVLKPG--AYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRF 199 (235)
T ss_dssp HHHHHHHHHEEEE--EEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTE
T ss_pred HHHHHHHHHcCCC--eEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCC
Confidence 4555565655421 1444443222110 11246789999999999
Q ss_pred eEEEEEEccCCCCccccCceEEEEEEeCC
Q psy3543 126 RFQEFLLSPTQFGVPNSRTRYYLIAKRSP 154 (250)
Q Consensus 126 ~v~~~il~a~~~GvPq~R~R~~lva~~~~ 154 (250)
.+...........-...-.-+|+.+....
T Consensus 200 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~~ 228 (235)
T 3sm3_A 200 EIDYFRVKELETRTGNKILGFVIIAQKLL 228 (235)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEECC
T ss_pred EEEEEEecceeeccCCccceEEEeeHHHH
Confidence 98876554444434444445555554443
No 99
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=74.57 E-value=1.9 Score=36.86 Aligned_cols=124 Identities=16% Similarity=0.198 Sum_probs=72.0
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHHHhCCC--CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchh
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPR--TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARC 80 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~~N~~~--~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~ 80 (250)
.|.+.+ .-|.|+|+|+...+..+.++++ ..++++|+.+++..++. ..|.+++.+|= + -.+
T Consensus 63 ~L~~~~---~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~--~~~~iv~NlPy------~-------iss 124 (271)
T 3fut_A 63 ALLEAG---AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVP--QGSLLVANLPY------H-------IAT 124 (271)
T ss_dssp HHHHTT---CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSC--TTEEEEEEECS------S-------CCH
T ss_pred HHHHcC---CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhcc--CccEEEecCcc------c-------ccH
Confidence 344444 3578999999999999999864 34678999888766553 57899999981 1 113
Q ss_pred hHHHHHHHHccccCCCcEEEEcc---ccCCCc------chHHHHHHHHHHhCCCeEEE-EEEccCCCCccccCceEEEEE
Q psy3543 81 TALSYLIETIPAIPSLQCLLLEN---VKGFEG------SRSRDLITSMLTRAGFRFQE-FLLSPTQFGVPNSRTRYYLIA 150 (250)
Q Consensus 81 ~l~~~~~~ii~~~~~P~~i~~EN---V~~~~~------~~~~~~i~~~L~~~GY~v~~-~il~a~~~GvPq~R~R~~lva 150 (250)
.+++++++- ... ...++|=. +..+.. ...+..++.. -|++.. +.+.+..| .|.-+--.-+|-
T Consensus 125 ~il~~ll~~-~~~--~~~~lm~QkEva~Rl~A~pg~k~yg~lSv~~q~----~~~~~~~~~v~~~~F-~P~PkVdSavv~ 196 (271)
T 3fut_A 125 PLVTRLLKT-GRF--ARLVFLVQKEVAERMTARPKTPAYGVLTLRVAH----HAVAERLFDLPPGAF-FPPPKVWSSLVR 196 (271)
T ss_dssp HHHHHHHHH-CCE--EEEEEEEEHHHHHHHTCCTTSTTCSHHHHHHHH----HEEEEEEEEECGGGE-ESCCSSCEEEEE
T ss_pred HHHHHHhcC-CCC--CEEEEEeeeeeeeecccCCCCCcccHHHHHHHH----HeeEEEEEEEChHHe-ECCCCCcEEEEE
Confidence 466666655 222 23333311 111111 1223333333 355544 36788888 676665555555
Q ss_pred Ee
Q psy3543 151 KR 152 (250)
Q Consensus 151 ~~ 152 (250)
..
T Consensus 197 l~ 198 (271)
T 3fut_A 197 LT 198 (271)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 100
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=73.88 E-value=30 Score=29.47 Aligned_cols=130 Identities=13% Similarity=0.083 Sum_probs=70.6
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC----------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP----------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARC 80 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~----------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~ 80 (250)
..-|.++|+|+.+.+.-+.|++ ...++.+|..+..... ...+|+++..+|- ++ +...... ..
T Consensus 107 ~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~--~~~fDvIi~D~~~-p~---~~~~~l~--~~ 178 (294)
T 3adn_A 107 VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT--SQTFDVIISDCTD-PI---GPGESLF--TS 178 (294)
T ss_dssp CCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CC--CCCEEEEEECC--------------C--CH
T ss_pred CCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhc--CCCccEEEECCCC-cc---Ccchhcc--HH
Confidence 5678899999999998888764 2345667776653321 2368999997763 22 1100000 01
Q ss_pred hHHHHHHHHccccCCCcEEEEccccC-CCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 81 TALSYLIETIPAIPSLQCLLLENVKG-FEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 81 ~l~~~~~~ii~~~~~P~~i~~ENV~~-~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
..+..+. +.++ |.-+++=|... +.....+..+.+.|++..-.+......-..| | .-.-.|++|++...
T Consensus 179 ~f~~~~~---~~Lk-pgG~lv~~~~s~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~--p-~g~~~f~~as~~~~ 247 (294)
T 3adn_A 179 AFYEGCK---RCLN-PGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTY--Y-GGIMTFAWATDNDA 247 (294)
T ss_dssp HHHHHHH---HTEE-EEEEEEEEEEECSSCCHHHHHHHHHHHHHCSEEEEEEEECTTS--S-SSEEEEEEEESCTT
T ss_pred HHHHHHH---HhcC-CCCEEEEecCCcccchHHHHHHHHHHHHHCCCeEEEEEEeccc--C-CCceEEEEEeCCcc
Confidence 2223333 3345 76666555532 3344667788888887744444443332233 1 24567888887653
No 101
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=73.44 E-value=21 Score=29.89 Aligned_cols=108 Identities=9% Similarity=0.014 Sum_probs=55.1
Q ss_pred cEEEEEEeC-cHHHHHHHHHhC-----CC----------CCccccCccccccccc----cCCCCcEEEeCCCCchhhhcC
Q psy3543 11 LEVVTAIDI-NTSANSVYKHNF-----PR----------TNLRGRNIQSFSIEEI----NAMSPDVILMSPPCQPFTRTG 70 (250)
Q Consensus 11 ~~~v~a~di-d~~a~~~y~~N~-----~~----------~~~~~~dI~~~~~~~~----~~~~~Dll~~gpPCQ~fS~ag 70 (250)
...|.++|+ ++.+.+.-+.|. .. ..+...|+.+.. .++ ....+|+++++-.-..
T Consensus 102 ~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~fD~Ii~~dvl~~----- 175 (281)
T 3bzb_A 102 ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSP-DSLQRCTGLQRFQVVLLADLLSF----- 175 (281)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCT-HHHHHHHSCSSBSEEEEESCCSC-----
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCcc-HHHHhhccCCCCCEEEEeCcccC-----
Confidence 447899999 899988888776 21 112212222211 112 2236899987433111
Q ss_pred CCCCCCCchhhHHHHHHHHccccCCC----cEEEEccccCCCcchHHHHHHHHHHhCC-CeEEEE
Q psy3543 71 LQKDIADARCTALSYLIETIPAIPSL----QCLLLENVKGFEGSRSRDLITSMLTRAG-FRFQEF 130 (250)
Q Consensus 71 ~~~~~~d~r~~l~~~~~~ii~~~~~P----~~i~~ENV~~~~~~~~~~~i~~~L~~~G-Y~v~~~ 130 (250)
.+....++..+.++++... | .++++-....-........+++.+++.| |.+...
T Consensus 176 -----~~~~~~ll~~l~~~Lk~~~-p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 176 -----HQAHDALLRSVKMLLALPA-NDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp -----GGGHHHHHHHHHHHBCCTT-TCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEE
T ss_pred -----hHHHHHHHHHHHHHhcccC-CCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEe
Confidence 1123357777777777322 3 4344322211000112356677888999 988643
No 102
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=73.27 E-value=14 Score=29.84 Aligned_cols=106 Identities=9% Similarity=0.051 Sum_probs=62.9
Q ss_pred EEEEEeCcHHHHHHHHHhCCC---CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPR---TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIET 89 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~---~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~i 89 (250)
.|.++|+++.+.+.-+.+... ..++.+|+.++. ++...+|+++.......++ .+....++.++.++
T Consensus 80 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~--------~~~~~~~l~~~~~~ 148 (266)
T 3ujc_A 80 HTHGIDICSNIVNMANERVSGNNKIIFEANDILTKE---FPENNFDLIYSRDAILALS--------LENKNKLFQKCYKW 148 (266)
T ss_dssp EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCC---CCTTCEEEEEEESCGGGSC--------HHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCC---CCCCcEEEEeHHHHHHhcC--------hHHHHHHHHHHHHH
Confidence 578999999999999888743 335567777653 2333789999764432221 01223456666666
Q ss_pred ccccCCCcEEEEccccCCC---c-------------chHHHHHHHHHHhCCCeEEEEE
Q psy3543 90 IPAIPSLQCLLLENVKGFE---G-------------SRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 90 i~~~~~P~~i~~ENV~~~~---~-------------~~~~~~i~~~L~~~GY~v~~~i 131 (250)
++.- -.+++.+-+..-. . ......+.+.|++.||.+....
T Consensus 149 L~pg--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 204 (266)
T 3ujc_A 149 LKPT--GTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSK 204 (266)
T ss_dssp EEEE--EEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred cCCC--CEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 6421 1555554332210 0 1135678888899999875443
No 103
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=72.32 E-value=1.6 Score=33.65 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=35.5
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
...|.++|+++.+.+..+.|... ..++.+|+.+..+. ... .+|++++.+|.
T Consensus 54 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~-~fD~i~~~~~~ 110 (177)
T 2esr_A 54 MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC-LTG-RFDLVFLDPPY 110 (177)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH-BCS-CEEEEEECCSS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh-hcC-CCCEEEECCCC
Confidence 45789999999999988887532 23456676654221 222 58999999885
No 104
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=72.29 E-value=31 Score=26.99 Aligned_cols=106 Identities=12% Similarity=0.083 Sum_probs=64.5
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccc
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPA 92 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~ 92 (250)
-+.++|+++. ...+..+|+.++. ++...+|+++++..-. ..+ ...++.++.++++.
T Consensus 88 ~v~~~D~s~~----------~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~----------~~~-~~~~l~~~~~~L~~ 143 (215)
T 2zfu_A 88 PVHCFDLASL----------DPRVTVCDMAQVP---LEDESVDVAVFCLSLM----------GTN-IRDFLEEANRVLKP 143 (215)
T ss_dssp CEEEEESSCS----------STTEEESCTTSCS---CCTTCEEEEEEESCCC----------SSC-HHHHHHHHHHHEEE
T ss_pred cEEEEeCCCC----------CceEEEeccccCC---CCCCCEeEEEEehhcc----------ccC-HHHHHHHHHHhCCC
Confidence 4678899887 2335677777643 3333689999755321 122 23566666666653
Q ss_pred cCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 93 IPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 93 ~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
- -.+++.|....+. ....+.+.|++.||.+........ ..+++++.+.+.
T Consensus 144 g--G~l~i~~~~~~~~---~~~~~~~~l~~~Gf~~~~~~~~~~--------~~~~~~~~k~~~ 193 (215)
T 2zfu_A 144 G--GLLKVAEVSSRFE---DVRTFLRAVTKLGFKIVSKDLTNS--------HFFLFDFQKTGP 193 (215)
T ss_dssp E--EEEEEEECGGGCS---CHHHHHHHHHHTTEEEEEEECCST--------TCEEEEEEECSS
T ss_pred C--eEEEEEEcCCCCC---CHHHHHHHHHHCCCEEEEEecCCC--------eEEEEEEEecCc
Confidence 1 2566666554432 467788889999998876443322 346677777665
No 105
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=71.90 E-value=36 Score=27.16 Aligned_cols=120 Identities=10% Similarity=0.028 Sum_probs=64.7
Q ss_pred EEEEEEeCcHHHHHHHHHhCC---CCCccccCcccccc-ccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP---RTNLRGRNIQSFSI-EEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLI 87 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~---~~~~~~~dI~~~~~-~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~ 87 (250)
..|.++|+++.+.+..+.|.. +..++.+|+.+... ..+. ..+|+++..+|- .+....++.++.
T Consensus 99 ~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~~~~------------~~~~~~~l~~~~ 165 (230)
T 1fbn_A 99 GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYEDVAQ------------PNQAEILIKNAK 165 (230)
T ss_dssp SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEECCCS------------TTHHHHHHHHHH
T ss_pred cEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEEecCC------------hhHHHHHHHHHH
Confidence 468899999999888777653 22344567665211 1122 268999833220 011223455555
Q ss_pred HHccccCCCcEEEEccccC--CCc----chHH-HHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCC
Q psy3543 88 ETIPAIPSLQCLLLENVKG--FEG----SRSR-DLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 154 (250)
Q Consensus 88 ~ii~~~~~P~~i~~ENV~~--~~~----~~~~-~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~ 154 (250)
++++.- -.+++. +.. ... ...+ +.+. .|++.||.+...+ + + -|..+..++++|.++.
T Consensus 166 ~~Lkpg---G~l~i~-~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~-~---~-~~~~~~~~~v~~~k~~ 229 (230)
T 1fbn_A 166 WFLKKG---GYGMIA-IKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEV-D---I-EPFEKDHVMFVGIWEG 229 (230)
T ss_dssp HHEEEE---EEEEEE-EEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEE-E---C-TTTSTTEEEEEEEECC
T ss_pred HhCCCC---cEEEEE-EecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEE-c---c-CCCccceEEEEEEeCC
Confidence 555421 233332 211 001 1223 3444 8888999776543 2 1 2456788999998764
No 106
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=71.48 E-value=2.2 Score=32.32 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=35.8
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC----CCCccccCcccccccc-ccCCCCcEEEeCCCCc
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEE-INAMSPDVILMSPPCQ 64 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~-~~~~~~Dll~~gpPCQ 64 (250)
.+ +.++|+++.+.+..+.|.. ...++++|+.+..+.. -....+|++++.+|..
T Consensus 64 ~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 64 WE-AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA 121 (171)
T ss_dssp CE-EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred Ce-EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence 45 8999999999888887753 3445677776642211 1112589999999843
No 107
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=70.42 E-value=2.5 Score=36.58 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=37.0
Q ss_pred EEEEEeCcHHHHHHHHHhC---CCCCccccCccccccccccCCCCcEEEeCCCC
Q psy3543 13 VVTAIDINTSANSVYKHNF---PRTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~---~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
-|.++|+|+...+..+.++ ++..++++|+.+++..+. .+|++++.+|-
T Consensus 74 ~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~---~fD~Iv~NlPy 124 (295)
T 3gru_A 74 KVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKL---DFNKVVANLPY 124 (295)
T ss_dssp EEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGS---CCSEEEEECCG
T ss_pred EEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccC---CccEEEEeCcc
Confidence 5789999998888777765 555678899988765442 58999999884
No 108
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=70.05 E-value=14 Score=30.57 Aligned_cols=117 Identities=11% Similarity=0.159 Sum_probs=67.1
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLI 87 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~ 87 (250)
.|.++|+++.+.+..+.|. .+..++++|+.++.........+|+++... ..+ -..++..+.
T Consensus 106 ~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a-------------~~~-~~~ll~~~~ 171 (249)
T 3g89_A 106 ELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA-------------VAP-LCVLSELLL 171 (249)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES-------------SCC-HHHHHHHHG
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC-------------cCC-HHHHHHHHH
Confidence 5789999999988888774 233456777776654321123689998621 111 122333333
Q ss_pred HHccccCCC--cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccc-cCceEEEEEEeCC
Q psy3543 88 ETIPAIPSL--QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPN-SRTRYYLIAKRSP 154 (250)
Q Consensus 88 ~ii~~~~~P--~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq-~R~R~~lva~~~~ 154 (250)
+++ + | .++++.... .......+...++.+|+.+.... .+.+|. .-.|..++..+..
T Consensus 172 ~~L---k-pgG~l~~~~g~~---~~~e~~~~~~~l~~~G~~~~~~~----~~~~p~~~~~R~l~~~~k~~ 230 (249)
T 3g89_A 172 PFL---E-VGGAAVAMKGPR---VEEELAPLPPALERLGGRLGEVL----ALQLPLSGEARHLVVLEKTA 230 (249)
T ss_dssp GGE---E-EEEEEEEEECSC---CHHHHTTHHHHHHHHTEEEEEEE----EEECTTTCCEEEEEEEEECS
T ss_pred HHc---C-CCeEEEEEeCCC---cHHHHHHHHHHHHHcCCeEEEEE----EeeCCCCCCcEEEEEEEeCC
Confidence 333 4 5 455555432 12345567777888898876433 234554 2467776666644
No 109
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=69.66 E-value=34 Score=25.96 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=31.2
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCCch
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQP 65 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~ 65 (250)
.|.++|+++.+.+.-+.|.. ...+++.|...+.. +....+|+++..++.-+
T Consensus 46 ~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~--~~~~~fD~v~~~~~~~~ 101 (185)
T 3mti_A 46 KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH--YVREPIRAAIFNLGYLP 101 (185)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG--TCCSCEEEEEEEEC---
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh--hccCCcCEEEEeCCCCC
Confidence 57899999999888777652 33344555554421 22236899998865433
No 110
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=69.39 E-value=21 Score=31.41 Aligned_cols=104 Identities=11% Similarity=0.117 Sum_probs=63.6
Q ss_pred EEEEEeCcHHHHHHHHHhC-------------CCCCccccCccccccc---cccCCCCcEEEeCCCCchhhhcCCCCCCC
Q psy3543 13 VVTAIDINTSANSVYKHNF-------------PRTNLRGRNIQSFSIE---EINAMSPDVILMSPPCQPFTRTGLQKDIA 76 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-------------~~~~~~~~dI~~~~~~---~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~ 76 (250)
-|.++|+++.+.+.-+.|. +...++.+|+.++... .++...+|+++....-.. ..
T Consensus 110 ~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~---------~~ 180 (383)
T 4fsd_A 110 KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNL---------ST 180 (383)
T ss_dssp EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGG---------CS
T ss_pred EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhc---------CC
Confidence 6789999999988888763 3445677888876422 344447899998754222 12
Q ss_pred CchhhHHHHHHHHccccCCCcEEEEccccCCC-c----------------chHHHHHHHHHHhCCCeEE
Q psy3543 77 DARCTALSYLIETIPAIPSLQCLLLENVKGFE-G----------------SRSRDLITSMLTRAGFRFQ 128 (250)
Q Consensus 77 d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~-~----------------~~~~~~i~~~L~~~GY~v~ 128 (250)
|. ..++.++.++++-= =.+++.+-...-. . .-..+.+.+.|++.||...
T Consensus 181 d~-~~~l~~~~r~Lkpg--G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 246 (383)
T 4fsd_A 181 NK-LALFKEIHRVLRDG--GELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDV 246 (383)
T ss_dssp CH-HHHHHHHHHHEEEE--EEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCE
T ss_pred CH-HHHHHHHHHHcCCC--CEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceE
Confidence 33 35666777766521 1444444322211 0 0234788999999999754
No 111
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=68.62 E-value=5 Score=36.02 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=46.4
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----C-CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----R-TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~-~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.|.++|+|+.+.+.-+.|.. + ..+.++|+.++... . .+|+++..|| -|.+.+....-..++..+
T Consensus 265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~---~-~fD~Iv~NPP------Yg~rl~~~~~l~~ly~~l 334 (393)
T 3k0b_A 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE---D-EYGVVVANPP------YGERLEDEEAVRQLYREM 334 (393)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC---C-CSCEEEECCC------CCCSHHHHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC---C-CCCEEEECCC------CccccCCchhHHHHHHHH
Confidence 37899999999998888742 1 33556777776542 2 6899999999 344322212223466677
Q ss_pred HHHccc
Q psy3543 87 IETIPA 92 (250)
Q Consensus 87 ~~ii~~ 92 (250)
.+.++.
T Consensus 335 g~~lk~ 340 (393)
T 3k0b_A 335 GIVYKR 340 (393)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 777765
No 112
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=68.44 E-value=9.9 Score=31.44 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=59.3
Q ss_pred HhhcCCCcEEEEEEeCcHHHHHHHHHhCCC----CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCch
Q psy3543 4 LSNHAFSLEVVTAIDINTSANSVYKHNFPR----TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADAR 79 (250)
Q Consensus 4 L~~~g~~~~~v~a~did~~a~~~y~~N~~~----~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r 79 (250)
+.+.| . -|.++|+++.+.+.-+.|... ..+..+|+.+. ++...+|++++.++... -
T Consensus 138 la~~g--~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~----~~~~~fD~Vv~n~~~~~-------------~ 197 (254)
T 2nxc_A 138 AEKLG--G-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA----LPFGPFDLLVANLYAEL-------------H 197 (254)
T ss_dssp HHHTT--C-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH----GGGCCEEEEEEECCHHH-------------H
T ss_pred HHHhC--C-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc----CcCCCCCEEEECCcHHH-------------H
Confidence 34444 4 788999999998888776421 23344555442 32336899998765321 1
Q ss_pred hhHHHHHHHHccccCCC--cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE
Q psy3543 80 CTALSYLIETIPAIPSL--QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 80 ~~l~~~~~~ii~~~~~P--~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
..++.++.+++ + | .+++..... .....+.+.|++.||.+....
T Consensus 198 ~~~l~~~~~~L---k-pgG~lils~~~~-----~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 198 AALAPRYREAL---V-PGGRALLTGILK-----DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp HHHHHHHHHHE---E-EEEEEEEEEEEG-----GGHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHc---C-CCCEEEEEeecc-----CCHHHHHHHHHHCCCEEEEEe
Confidence 23444555554 3 4 333322221 357788899999999986543
No 113
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=67.68 E-value=25 Score=28.22 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=58.9
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLI 87 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~ 87 (250)
.+.++|+++.+.+.-+.+. ++..+..+|+.++. ++...+|+++.......+ .|. ..++.++.
T Consensus 45 ~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~---------~~~-~~~l~~~~ 111 (239)
T 1xxl_A 45 ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP---FPDDSFDIITCRYAAHHF---------SDV-RKAVREVA 111 (239)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC---SCTTCEEEEEEESCGGGC---------SCH-HHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC---CCCCcEEEEEECCchhhc---------cCH-HHHHHHHH
Confidence 6789999998887766653 33445667776653 333368999986543222 233 24556666
Q ss_pred HHccccCCCcEEEEccccCC-------------------CcchHHHHHHHHHHhCCCeEEE
Q psy3543 88 ETIPAIPSLQCLLLENVKGF-------------------EGSRSRDLITSMLTRAGFRFQE 129 (250)
Q Consensus 88 ~ii~~~~~P~~i~~ENV~~~-------------------~~~~~~~~i~~~L~~~GY~v~~ 129 (250)
++++.- -.+++.+....- ...-....+.+.|++.||.+..
T Consensus 112 ~~Lkpg--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~ 170 (239)
T 1xxl_A 112 RVLKQD--GRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQD 170 (239)
T ss_dssp HHEEEE--EEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEE
T ss_pred HHcCCC--cEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEE
Confidence 666431 245555544310 0112355677778888877543
No 114
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=67.49 E-value=47 Score=26.68 Aligned_cols=118 Identities=12% Similarity=0.146 Sum_probs=65.8
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccc-cccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIE-EINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~-~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
-|.++|+++.+.+.-+.|. ++..++++|+.++... ... ..+|+++... ..+ ...++..+
T Consensus 96 ~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~-------------~~~-~~~~l~~~ 160 (240)
T 1xdz_A 96 HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVR-ESYDIVTARA-------------VAR-LSVLSELC 160 (240)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTT-TCEEEEEEEC-------------CSC-HHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccccccc-CCccEEEEec-------------cCC-HHHHHHHH
Confidence 4789999998887777653 2344567777665421 111 2689999633 112 12233333
Q ss_pred HHHccccCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccc-cCceEEEEEEeCCC
Q psy3543 87 IETIPAIPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPN-SRTRYYLIAKRSPA 155 (250)
Q Consensus 87 ~~ii~~~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq-~R~R~~lva~~~~~ 155 (250)
.+ .++ |- .+++. .|.........+.+.++..|+.+.... .+.+|. ...|.+++..+...
T Consensus 161 ~~---~Lk-pgG~l~~~--~g~~~~~~~~~~~~~l~~~g~~~~~~~----~~~~~~~~~~~~l~~~~k~~~ 221 (240)
T 1xdz_A 161 LP---LVK-KNGLFVAL--KAASAEEELNAGKKAITTLGGELENIH----SFKLPIEESDRNIMVIRKIKN 221 (240)
T ss_dssp GG---GEE-EEEEEEEE--ECC-CHHHHHHHHHHHHHTTEEEEEEE----EEECTTTCCEEEEEEEEECSC
T ss_pred HH---hcC-CCCEEEEE--eCCCchHHHHHHHHHHHHcCCeEeEEE----EEecCCCCCceEEEEEEecCC
Confidence 33 344 52 23332 232223456678888999999875432 112443 34577777776654
No 115
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=67.46 E-value=4.8 Score=34.50 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=32.6
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCch
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQP 65 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~ 65 (250)
-|.|+|+|+.+.+..+.|. ++..++++|+.++.. . .+|++++.+|++.
T Consensus 66 ~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~---~--~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 66 KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF---P--KFDVCTANIPYKI 118 (299)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC---C--CCSEEEEECCGGG
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc---c--cCCEEEEcCCccc
Confidence 5789999999988877764 334456778776542 2 6799999999764
No 116
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=67.40 E-value=26 Score=27.82 Aligned_cols=110 Identities=10% Similarity=0.034 Sum_probs=63.7
Q ss_pred HhhcCCCcEEEEEEeCcHHHHHHHHHhCC--CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 4 LSNHAFSLEVVTAIDINTSANSVYKHNFP--RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 4 L~~~g~~~~~v~a~did~~a~~~y~~N~~--~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
|.+.| . -+.++|+++.+.+..+.+.. ...++.+|+.++. ++...+|+++....-. ...+.. .
T Consensus 71 l~~~~--~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~---------~~~~~~-~ 134 (242)
T 3l8d_A 71 LSRTG--Y-KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLP---FENEQFEAIMAINSLE---------WTEEPL-R 134 (242)
T ss_dssp HHHTT--C-EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCS---SCTTCEEEEEEESCTT---------SSSCHH-H
T ss_pred HHHcC--C-eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCC---CCCCCccEEEEcChHh---------hccCHH-H
Confidence 44444 4 46799999999999888753 2335567777653 2333789999753321 123333 4
Q ss_pred HHHHHHHHccccCCCcEEEEccccCCCc----------------chHHHHHHHHHHhCCCeEEEEE
Q psy3543 82 ALSYLIETIPAIPSLQCLLLENVKGFEG----------------SRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~~i~~ENV~~~~~----------------~~~~~~i~~~L~~~GY~v~~~i 131 (250)
++.++.++++.-- .+++....+.... .-....+...|++.||.+....
T Consensus 135 ~l~~~~~~L~pgG--~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 135 ALNEIKRVLKSDG--YACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp HHHHHHHHEEEEE--EEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHhCCCe--EEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 6666666664311 3343332111100 0234578889999999986543
No 117
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=65.60 E-value=6.3 Score=33.13 Aligned_cols=120 Identities=14% Similarity=0.248 Sum_probs=67.0
Q ss_pred EEEEEEeCcHHHHHHHHHhCC---CCCccccCcccccccccc-CCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP---RTNLRGRNIQSFSIEEIN-AMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLI 87 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~---~~~~~~~dI~~~~~~~~~-~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~ 87 (250)
.-|.|+|+|+...+..+.++. +..++++|+.+++..++. ...+| +++.+|=. -.+.++++++
T Consensus 52 ~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~NlPY~-------------is~~il~~ll 117 (255)
T 3tqs_A 52 DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPLR-VVGNLPYN-------------ISTPLLFHLF 117 (255)
T ss_dssp SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCCSSCEE-EEEECCHH-------------HHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhccCCCeE-EEecCCcc-------------cCHHHHHHHH
Confidence 368899999999999988864 345678999988765542 11345 77777721 1123555555
Q ss_pred HHccccCCCcEEEE---ccccCCCc---c---hHHHHHHHHHHhCCCeEEE-EEEccCCCCccccCceEEEEEEe
Q psy3543 88 ETIPAIPSLQCLLL---ENVKGFEG---S---RSRDLITSMLTRAGFRFQE-FLLSPTQFGVPNSRTRYYLIAKR 152 (250)
Q Consensus 88 ~ii~~~~~P~~i~~---ENV~~~~~---~---~~~~~i~~~L~~~GY~v~~-~il~a~~~GvPq~R~R~~lva~~ 152 (250)
+-..... ..++| |=...+.. + ..+..++..+ |++.. +.+.+..| .|+-+--.-+|-..
T Consensus 118 ~~~~~~~--~~~lm~QkEva~Rl~a~pg~k~yg~lsv~~q~~----~~~~~~~~v~~~~F-~P~PkVdSavv~l~ 185 (255)
T 3tqs_A 118 SQIHCIE--DMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYF----CDNTYLFTVSPQAF-TPPPRVESAIIRLI 185 (255)
T ss_dssp HTGGGEE--EEEEEEEHHHHHHHTCCTTSTTCSHHHHHHHHH----EEEEEEEEECGGGE-ESCCSSCEEEEEEE
T ss_pred hCCCChh--eEEEEEeHHHHHHhhCCCCCCccchhhheeeee----EEEEEEEEEChHHc-cCCCCCeEEEEEEE
Confidence 4222222 33333 21222221 1 2233343333 55544 36888888 67777555555543
No 118
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=65.10 E-value=4.2 Score=36.41 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=45.6
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.|+++|+|+.+.+.-+.|.. ...+.++|+.++... ..+|+++.-|| -|.+.+....-..++.++
T Consensus 259 ~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~----~~~D~Iv~NPP------yg~rl~~~~~l~~ly~~l 328 (385)
T 3ldu_A 259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE----DEFGFIITNPP------YGERLEDKDSVKQLYKEL 328 (385)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS----CBSCEEEECCC------CCCSHHHHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC----CCCcEEEECCC------CcCccCCHHHHHHHHHHH
Confidence 47899999999998888742 123456777766432 26899999999 343322222223466667
Q ss_pred HHHccc
Q psy3543 87 IETIPA 92 (250)
Q Consensus 87 ~~ii~~ 92 (250)
.+.++.
T Consensus 329 g~~lk~ 334 (385)
T 3ldu_A 329 GYAFRK 334 (385)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 777765
No 119
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=64.63 E-value=27 Score=28.29 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=59.2
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLI 87 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~ 87 (250)
.+.++|+++...+.-+.+. ++..+..+|+.++. ++...+|+++.....+-+ .|.. .++.++.
T Consensus 61 ~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~---~~~~~fD~V~~~~~l~~~---------~d~~-~~l~~~~ 127 (260)
T 1vl5_A 61 KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP---FTDERFHIVTCRIAAHHF---------PNPA-SFVSEAY 127 (260)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC---SCTTCEEEEEEESCGGGC---------SCHH-HHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC---CCCCCEEEEEEhhhhHhc---------CCHH-HHHHHHH
Confidence 6789999998887766653 33445677877653 333368999977543322 2333 4666666
Q ss_pred HHccccCCCcEEEEccccCC-------------------CcchHHHHHHHHHHhCCCeEEE
Q psy3543 88 ETIPAIPSLQCLLLENVKGF-------------------EGSRSRDLITSMLTRAGFRFQE 129 (250)
Q Consensus 88 ~ii~~~~~P~~i~~ENV~~~-------------------~~~~~~~~i~~~L~~~GY~v~~ 129 (250)
++++-- =.+++.+....- ........+.+.|++.||.+..
T Consensus 128 r~Lkpg--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 186 (260)
T 1vl5_A 128 RVLKKG--GQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEE 186 (260)
T ss_dssp HHEEEE--EEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEE
T ss_pred HHcCCC--CEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEE
Confidence 666421 144454433210 0112345677888888987643
No 120
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=64.13 E-value=35 Score=28.02 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=36.4
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.|.++|+++...+.-+.+.+...+..+|+.++.. + ..+|++++...
T Consensus 81 ~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~---~-~~fD~v~~~~~ 126 (279)
T 3ccf_A 81 EVLGTDNAATMIEKARQNYPHLHFDVADARNFRV---D-KPLDAVFSNAM 126 (279)
T ss_dssp EEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC---S-SCEEEEEEESC
T ss_pred eEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc---C-CCcCEEEEcch
Confidence 6789999999999888888777777888887653 2 26899998654
No 121
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=63.81 E-value=40 Score=25.40 Aligned_cols=104 Identities=14% Similarity=0.051 Sum_probs=60.0
Q ss_pred EeCcHHHHHHHHHhCCC-CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccccCC
Q psy3543 17 IDINTSANSVYKHNFPR-TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPS 95 (250)
Q Consensus 17 ~did~~a~~~y~~N~~~-~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~~~~ 95 (250)
+|+++...+.-+.+.+. ..+..+|+.++....++...+|+++.+.--+.+ ..|. ..++.++.++++---
T Consensus 26 vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~--------~~~~-~~~l~~~~r~LkpgG- 95 (176)
T 2ld4_A 26 VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGST--------TLHS-AEILAEIARILRPGG- 95 (176)
T ss_dssp HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCC--------CCCC-HHHHHHHHHHEEEEE-
T ss_pred eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhc--------ccCH-HHHHHHHHHHCCCCE-
Confidence 68888888877777643 345677887765322233468999976432211 0232 357777777775311
Q ss_pred CcEEEEccccCCC----cchHHHHHHHHHHhCCCeEEEEEE
Q psy3543 96 LQCLLLENVKGFE----GSRSRDLITSMLTRAGFRFQEFLL 132 (250)
Q Consensus 96 P~~i~~ENV~~~~----~~~~~~~i~~~L~~~GY~v~~~il 132 (250)
.+++.+...... .......+.+.|++.|| +....+
T Consensus 96 -~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~ 134 (176)
T 2ld4_A 96 -CLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKEL 134 (176)
T ss_dssp -EEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEE
T ss_pred -EEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecC
Confidence 344422221110 01246889999999999 664433
No 122
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=63.59 E-value=7.8 Score=31.68 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=35.1
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----C-CCccccCccccccccccC---CCCcEEEeCCCCchhh
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----R-TNLRGRNIQSFSIEEINA---MSPDVILMSPPCQPFT 67 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~-~~~~~~dI~~~~~~~~~~---~~~Dll~~gpPCQ~fS 67 (250)
.|.++|+++.+.+.-+.|.. + ..++++|+.+.-.+.++. ..+|+++..||+-...
T Consensus 91 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~ 154 (254)
T 2h00_A 91 YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQ 154 (254)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC---
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCc
Confidence 57899999999888777642 1 335667766521112221 2689999999987654
No 123
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=62.77 E-value=5.6 Score=33.81 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=36.9
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCCchhh
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFT 67 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS 67 (250)
-|.++|+|+...+..+.+... ..++++|+.+++ ++ .+|++++.+|++-.+
T Consensus 52 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~---~~--~fD~vv~nlpy~~~~ 107 (285)
T 1zq9_A 52 KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD---LP--FFDTCVANLPYQISS 107 (285)
T ss_dssp EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC---CC--CCSEEEEECCGGGHH
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc---ch--hhcEEEEecCcccch
Confidence 578999999999888887532 235567776653 33 579999999987554
No 124
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=61.86 E-value=18 Score=29.59 Aligned_cols=102 Identities=11% Similarity=0.002 Sum_probs=59.2
Q ss_pred cEEEEEEeCcHHHHHHHHHhC------CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNF------PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALS 84 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~------~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~ 84 (250)
..-|.++|+++.+.+.-+.+. +...++.+|+.++. ++...+|++++......+ +. ..++.
T Consensus 69 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~i~~~~~~~~~----------~~-~~~l~ 134 (267)
T 3kkz_A 69 TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP---FRNEELDLIWSEGAIYNI----------GF-ERGLN 134 (267)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---CCTTCEEEEEESSCGGGT----------CH-HHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC---CCCCCEEEEEEcCCceec----------CH-HHHHH
Confidence 336789999999888777764 22345677877654 223368999988765433 11 22333
Q ss_pred HHHHHccccCCC--cEEEEccccCCC---------------cchHHHHHHHHHHhCCCeEEEE
Q psy3543 85 YLIETIPAIPSL--QCLLLENVKGFE---------------GSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 85 ~~~~ii~~~~~P--~~i~~ENV~~~~---------------~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
++.+ .++ | .+++.+-+..-. .-.....+.+.|++.||.+...
T Consensus 135 ~~~~---~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 135 EWRK---YLK-KGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp HHGG---GEE-EEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred HHHH---HcC-CCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 3433 344 5 333333221000 0113457888899999987644
No 125
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=61.75 E-value=9 Score=31.89 Aligned_cols=132 Identities=11% Similarity=0.110 Sum_probs=69.5
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHHHhCC----------------------CCCccccCccccccccccCCCCcEEEeC
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFP----------------------RTNLRGRNIQSFSIEEINAMSPDVILMS 60 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~~N~~----------------------~~~~~~~dI~~~~~~~~~~~~~Dll~~g 60 (250)
.|.+.| + -|.|+|+++.+++..+.++. +..++++|+.++...+.. .+|+++..
T Consensus 85 ~La~~G--~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~--~FD~V~~~ 159 (252)
T 2gb4_A 85 WFADRG--H-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIG--KFDRIWDR 159 (252)
T ss_dssp HHHHTT--C-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCC--CEEEEEES
T ss_pred HHHHCC--C-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcccCC--CEEEEEEh
Confidence 355555 5 57899999999998876552 233567888877654322 68999853
Q ss_pred CCCchhhhcCCCCCCCCchhhHHHHHHHHccccCCCcEEE--EccccCCCcc----hHHHHHHHHHHhCCCeEEEE-EEc
Q psy3543 61 PPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLL--LENVKGFEGS----RSRDLITSMLTRAGFRFQEF-LLS 133 (250)
Q Consensus 61 pPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~~~~P~~i~--~ENV~~~~~~----~~~~~i~~~L~~~GY~v~~~-il~ 133 (250)
.- +.... .+.+...+.++.++++-= -.+++ ++--.+-..+ -..+.+.+.|.. +|.+... ..+
T Consensus 160 ~~---l~~l~-----~~~~~~~l~~~~~~LkpG--G~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~~~~ 228 (252)
T 2gb4_A 160 GA---LVAIN-----PGDHDRYADIILSLLRKE--FQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLEEVD 228 (252)
T ss_dssp SS---TTTSC-----GGGHHHHHHHHHHTEEEE--EEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEEEEE
T ss_pred hh---hhhCC-----HHHHHHHHHHHHHHcCCC--eEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEeccc
Confidence 21 11110 123444555666655421 13321 2211111111 134667777765 5766433 222
Q ss_pred c-----CCCCccccCceEEEEE
Q psy3543 134 P-----TQFGVPNSRTRYYLIA 150 (250)
Q Consensus 134 a-----~~~GvPq~R~R~~lva 150 (250)
. ...|++.-.+++|.+-
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~l~ 250 (252)
T 2gb4_A 229 ALEERHKAWGLDYLFEKLYLLT 250 (252)
T ss_dssp CCCGGGTTTTCSCCEEEEEEEE
T ss_pred cchhhhhhcCcchhhheeEEEe
Confidence 2 2446666666666553
No 126
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=61.28 E-value=43 Score=28.79 Aligned_cols=127 Identities=16% Similarity=0.082 Sum_probs=64.3
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCC---------CccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRT---------NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~---------~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
...|.++|+|+.+.+.-+.|++.. .++.+|+.+.... ....+|+++..++. ++ +. ...
T Consensus 132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~--~~~~fD~Ii~d~~~-~~---~~-------~~~ 198 (314)
T 2b2c_A 132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN--HKNEFDVIITDSSD-PV---GP-------AES 198 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH--CTTCEEEEEECCC-------------------
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh--cCCCceEEEEcCCC-CC---Cc-------chh
Confidence 457889999999999999998642 2345565543221 12368999987763 22 11 112
Q ss_pred HH-HHHHHHc-cccCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCC
Q psy3543 82 AL-SYLIETI-PAIPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 154 (250)
Q Consensus 82 l~-~~~~~ii-~~~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~ 154 (250)
++ .++++.+ +.++ |. .+++++-.-+........+.+.|++.-=.+......-..|... .--|++|+++.
T Consensus 199 l~t~~~l~~~~~~Lk-pgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g---~~g~~~ask~~ 270 (314)
T 2b2c_A 199 LFGQSYYELLRDALK-EDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSG---SMGYLICAKNA 270 (314)
T ss_dssp -----HHHHHHHHEE-EEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGG---EEEEEEEESST
T ss_pred hhHHHHHHHHHhhcC-CCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCC---ceEEEEEeCCC
Confidence 22 3333322 2344 64 4445442223344556677777777632343332221122111 23477887663
No 127
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=60.84 E-value=18 Score=29.42 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=54.5
Q ss_pred EEEEEeCcHHHHHHHHHh-------------CCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCch
Q psy3543 13 VVTAIDINTSANSVYKHN-------------FPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADAR 79 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N-------------~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r 79 (250)
.+.++|+++.+.+.-+.| .++..++.+|+.+..+..++...+|.++..+|...+-.....+.. ..
T Consensus 75 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~--~~ 152 (246)
T 2vdv_E 75 LILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARI--IT 152 (246)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEEEEEEESCCCC------CSSC--CC
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccCEEEEECCCcccccchhHHhh--cc
Confidence 578999999887665543 234445678887644433444467888877776433221111111 11
Q ss_pred hhHHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCC
Q psy3543 80 CTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGF 125 (250)
Q Consensus 80 ~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY 125 (250)
..++..+.++++.= -.+++.-++. ...+.+.+.+...|.
T Consensus 153 ~~~l~~~~~~Lkpg--G~l~~~td~~-----~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 153 NTLLSEYAYVLKEG--GVVYTITDVK-----DLHEWMVKHLEEHPL 191 (246)
T ss_dssp HHHHHHHHHHEEEE--EEEEEEESCH-----HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCC--CEEEEEeccH-----HHHHHHHHHHHhCcC
Confidence 24556666666421 1333322222 234556667777774
No 128
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=60.73 E-value=4.2 Score=36.76 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=41.4
Q ss_pred EEEEEeCcHHHHHHHHHhCC----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQ 72 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~ 72 (250)
.|.|+|+++.+.+..+.|.. ...++.+|..++.. .++...+|+++.-+||.+.....+.
T Consensus 272 ~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~-~~~~~~fD~Vl~D~Pcsg~g~~~~~ 334 (429)
T 1sqg_A 272 QVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ-WCGEQQFDRILLDAPCSATGVIRRH 334 (429)
T ss_dssp EEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH-HHTTCCEEEEEEECCCCCGGGTTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchh-hcccCCCCEEEEeCCCCcccccCCC
Confidence 67899999988887777742 23345667766542 1332368999999999988766543
No 129
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=60.23 E-value=45 Score=29.65 Aligned_cols=129 Identities=8% Similarity=0.029 Sum_probs=67.2
Q ss_pred EEEEEEeCcHHHHHHHHHhCCCC-------------CccccCccccccccc-cCCCCcEEEeCCCCchhhhcCCCCCCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFPRT-------------NLRGRNIQSFSIEEI-NAMSPDVILMSPPCQPFTRTGLQKDIAD 77 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~~-------------~~~~~dI~~~~~~~~-~~~~~Dll~~gpPCQ~fS~ag~~~~~~d 77 (250)
.-|.++|+|+.+.+.-+.|++.. .++.+|..++-.+.. ....+|+++.-+|=.|++ . .
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~---~-----~ 283 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPIS---T-----S 283 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCC---C-----C
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcccC---c-----C
Confidence 56788999999999999998732 233455554432210 123689999998732221 1 1
Q ss_pred chhhHH-HHHHHH-----ccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEE--EEEccCCCCccccCceEEEE
Q psy3543 78 ARCTAL-SYLIET-----IPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQE--FLLSPTQFGVPNSRTRYYLI 149 (250)
Q Consensus 78 ~r~~l~-~~~~~i-----i~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~--~il~a~~~GvPq~R~R~~lv 149 (250)
+. .|+ .++++. .+.++ |.-+++=|.....-.+....+.+.|+++=-.+.. ....-..|+- ...|.+
T Consensus 284 p~-~L~t~eFy~~~~~~~~~~L~-pgGilv~qs~s~~~~e~~~~~~~~l~~~F~~v~~~~~~~~vPsy~~----~w~f~~ 357 (364)
T 2qfm_A 284 PE-EDSTWEFLRLILDLSMKVLK-QDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLE----LWVFYT 357 (364)
T ss_dssp -----CHHHHHHHHHHHHHHTEE-EEEEEEEEEEETTCHHHHHHHHHHHTTSSSCEEEEEEEECCGGGSS----CEEEEE
T ss_pred ch-hhhHHHHHHHHHHHHHhhCC-CCcEEEEEcCCcchHHHHHHHHHHHHHhCCceEEeeEeeecCCchh----heEeEE
Confidence 11 121 233333 24556 7666554443322233344444446654334443 2333333422 677777
Q ss_pred EEeCC
Q psy3543 150 AKRSP 154 (250)
Q Consensus 150 a~~~~ 154 (250)
++++.
T Consensus 358 ~~k~~ 362 (364)
T 2qfm_A 358 VWKKA 362 (364)
T ss_dssp EEECC
T ss_pred eeccc
Confidence 77663
No 130
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=60.22 E-value=36 Score=27.18 Aligned_cols=51 Identities=14% Similarity=0.039 Sum_probs=34.2
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC----CCCccccCccccccccccCCCCcEEEe-CCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEEINAMSPDVILM-SPP 62 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~~~~~~~Dll~~-gpP 62 (250)
...+.++|+++.+.+.-+.+.. ...++.+|+.++.. .++...+|+++. +.+
T Consensus 83 ~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 83 IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP-TLPDGHFDGILYDTYP 138 (236)
T ss_dssp EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG-GSCTTCEEEEEECCCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhc-ccCCCceEEEEECCcc
Confidence 5578899999999888887763 23345667666521 233336899998 444
No 131
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=60.05 E-value=40 Score=30.31 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=35.0
Q ss_pred EEEEEeCcHHHHHHHHHhC---C----CCCccccCccccccccccCCCCcEEEeCCCCchhh
Q psy3543 13 VVTAIDINTSANSVYKHNF---P----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFT 67 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~---~----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS 67 (250)
.++++|+++.+...-+.|. + ...+.++|....... ..+|++++-||.....
T Consensus 210 ~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~----~~fD~Iv~NPPf~~~~ 267 (445)
T 2okc_A 210 ALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS----TLVDVILANPPFGTRP 267 (445)
T ss_dssp TEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS----SCEEEEEECCCSSCCC
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCccc----CCcCEEEECCCCCCcc
Confidence 5799999999988777663 2 233556665544321 1689999999976544
No 132
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=60.01 E-value=3.5 Score=31.69 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=35.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC------CCCccccCcccccccc-ccCCCCcEEEeCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEE-INAMSPDVILMSPP 62 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~-~~~~~~Dll~~gpP 62 (250)
..-|.++|+++.+.+..+.|.. ...++++|+.+....- .....+|++++.+|
T Consensus 67 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~ 125 (187)
T 2fhp_A 67 MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP 125 (187)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCC
Confidence 4578999999999888877752 2345667776643211 11236899999988
No 133
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=59.68 E-value=7.8 Score=30.28 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=38.9
Q ss_pred HhhcCCCcEEEEEEeCcHHHHHHHHHhCCC---CCccccCccccccccccCCCCcEEEeCCCCch
Q psy3543 4 LSNHAFSLEVVTAIDINTSANSVYKHNFPR---TNLRGRNIQSFSIEEINAMSPDVILMSPPCQP 65 (250)
Q Consensus 4 L~~~g~~~~~v~a~did~~a~~~y~~N~~~---~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~ 65 (250)
|.+.| ...+.++|+++.+.+.-+.+... ..++.+|+.++. ++...+|+++...+-..
T Consensus 60 l~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 60 LFLGG--FPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD---FPSASFDVVLEKGTLDA 119 (215)
T ss_dssp HHHTT--CCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCC---SCSSCEEEEEEESHHHH
T ss_pred HHHcC--CCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCC---CCCCcccEEEECcchhh
Confidence 33444 33688999999999998888743 345567776652 33336899998776443
No 134
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=59.54 E-value=6.7 Score=35.58 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=34.5
Q ss_pred EEEEEEeCcHHHHHHHHHhCCC----CCccccCccccccccccCCCCcEEEeCCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFPR----TNLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~----~~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
.-|.++|+++.+.+.-+.|... ..++.+|+.++.+. .+|+++..||.
T Consensus 313 ~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~-----~fD~Vv~dPPr 363 (425)
T 2jjq_A 313 FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK-----GFDTVIVDPPR 363 (425)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT-----TCSEEEECCCT
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc-----CCCEEEEcCCc
Confidence 3678999999998888777521 34566777765432 58999999994
No 135
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=58.95 E-value=80 Score=27.07 Aligned_cols=128 Identities=14% Similarity=0.097 Sum_probs=75.5
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC----------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP----------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARC 80 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~----------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~ 80 (250)
.+-|..+|||+.-.+..+..+| ...++.+|-.+.-.+. ...+|+++.-.+-. . |...
T Consensus 107 v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~--~~~yDvIi~D~~dp-~---~~~~------- 173 (294)
T 3o4f_A 107 VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT--SQTFDVIISDCTDP-I---GPGE------- 173 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS--SCCEEEEEESCCCC-C---CTTC-------
T ss_pred cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc--cccCCEEEEeCCCc-C---CCch-------
Confidence 5678889999998887777664 2235566766654332 22689999887632 1 1111
Q ss_pred hHH-HHHHHHcc-ccCCCcEEEEccccC-CCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 81 TAL-SYLIETIP-AIPSLQCLLLENVKG-FEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 81 ~l~-~~~~~ii~-~~~~P~~i~~ENV~~-~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
.|| .++++.++ .++ |.-+++=+... +...+.+..+.+.|++..-.+......--.|. .=...|++|+++..
T Consensus 174 ~L~t~eFy~~~~~~L~-p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~~~~~vPty~---~g~w~f~~as~~~~ 247 (294)
T 3o4f_A 174 SLFTSAFYEGCKRCLN-PGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYY---GGIMTFAWATDNDA 247 (294)
T ss_dssp CSSCCHHHHHHHHTEE-EEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEEEEECCTTSS---SSCEEEEEEESCTT
T ss_pred hhcCHHHHHHHHHHhC-CCCEEEEecCCcccChHHHHHHHHHHHhhCCceeeeeeeeccCC---CcceeheeEECCCc
Confidence 122 13333333 345 87777766543 33456677778888877655655544433341 23577888987654
No 136
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=58.73 E-value=23 Score=29.53 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=67.7
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
-|.++|+++...+.-+.+... ..++++|+.++.. + ++|+++...--+-+. .+.+..++.++
T Consensus 98 ~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~---~--~~d~v~~~~~l~~~~--------~~~~~~~l~~i 164 (261)
T 4gek_A 98 KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---E--NASMVVLNFTLQFLE--------PSERQALLDKI 164 (261)
T ss_dssp EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC---C--SEEEEEEESCGGGSC--------HHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc---c--ccccceeeeeeeecC--------chhHhHHHHHH
Confidence 467899999988777665321 2245678776643 2 568887654322111 12344566667
Q ss_pred HHHccccCCCcEEEEccccCCCc------------------------------------chHHHHHHHHHHhCCCeEEEE
Q psy3543 87 IETIPAIPSLQCLLLENVKGFEG------------------------------------SRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 87 ~~ii~~~~~P~~i~~ENV~~~~~------------------------------------~~~~~~i~~~L~~~GY~v~~~ 130 (250)
.+.++-= =.+++.|.+..-.. ....+.+.+.|++.||.....
T Consensus 165 ~~~LkpG--G~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~ 242 (261)
T 4gek_A 165 YQGLNPG--GALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSEL 242 (261)
T ss_dssp HHHEEEE--EEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEE
T ss_pred HHHcCCC--cEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEE
Confidence 6666421 25666665542110 012345667789999976544
Q ss_pred EEccCCCCccccCceEEEEEEeCCC
Q psy3543 131 LLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 131 il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
.....+||. +||.+.+.
T Consensus 243 ~fq~~nF~~--------~iA~K~~~ 259 (261)
T 4gek_A 243 WFQCFNFGS--------LVALKAED 259 (261)
T ss_dssp EEEETTEEE--------EEEECCTT
T ss_pred EEEeccEEE--------EEEEEcCC
Confidence 444455543 57776553
No 137
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=57.92 E-value=63 Score=26.95 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=34.0
Q ss_pred EEEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.-+.++|+++.+.+.-+.|+.. ..++.+|+.++... ..+|+++...+
T Consensus 144 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~fD~v~~~~~ 196 (305)
T 3ocj_A 144 VQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR----EGYDLLTSNGL 196 (305)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC----SCEEEEECCSS
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc----CCeEEEEECCh
Confidence 3678999999999998888754 23456777776432 27899997554
No 138
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=57.72 E-value=38 Score=26.51 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=31.9
Q ss_pred EEEEEEeCcHHHHHHHHHhCC----------CCCccccCccccccccccCCCCcEEEeCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFP----------RTNLRGRNIQSFSIEEINAMSPDVILMSP 61 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~----------~~~~~~~dI~~~~~~~~~~~~~Dll~~gp 61 (250)
..+.++|+++.+.+.-+.++. ...++.+|+..... ....+|++++..
T Consensus 54 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~V~~~~ 110 (219)
T 3jwg_A 54 EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK---RFSGYDAATVIE 110 (219)
T ss_dssp CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG---GGTTCSEEEEES
T ss_pred CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc---ccCCCCEEEEHH
Confidence 467899999999998888764 33455667644322 122689999653
No 139
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=57.54 E-value=13 Score=30.93 Aligned_cols=120 Identities=12% Similarity=0.215 Sum_probs=66.5
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCC--CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPR--TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIE 88 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~--~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ 88 (250)
..-|.++|+|+.+.+..+.| +. ..++++|+.+++..++.. ..++++.+|=. -.+.++.++++
T Consensus 54 ~~~v~avEid~~~~~~~~~~-~~~~v~~i~~D~~~~~~~~~~~--~~~vv~NlPy~-------------i~~~il~~ll~ 117 (249)
T 3ftd_A 54 LKKLYVIELDREMVENLKSI-GDERLEVINEDASKFPFCSLGK--ELKVVGNLPYN-------------VASLIIENTVY 117 (249)
T ss_dssp CSEEEEECCCHHHHHHHTTS-CCTTEEEECSCTTTCCGGGSCS--SEEEEEECCTT-------------THHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHhc-cCCCeEEEEcchhhCChhHccC--CcEEEEECchh-------------ccHHHHHHHHh
Confidence 35688999999999988887 43 246788998887666542 35788888831 12345556655
Q ss_pred HccccCCCcEEEEcc--ccCCCcc---hHHHHHHHHHHhCCCeEEE-EEEccCCCCccccCceEEEEEEe
Q psy3543 89 TIPAIPSLQCLLLEN--VKGFEGS---RSRDLITSMLTRAGFRFQE-FLLSPTQFGVPNSRTRYYLIAKR 152 (250)
Q Consensus 89 ii~~~~~P~~i~~EN--V~~~~~~---~~~~~i~~~L~~~GY~v~~-~il~a~~~GvPq~R~R~~lva~~ 152 (250)
-..... --+++++- ...+..+ ..+..++ +.-|++.. +.+.+..| .|.-.--.-+|-..
T Consensus 118 ~~~~~~-~~~~m~Qkeva~Rl~a~k~yg~lsv~~----q~~~~~~~~~~v~~~~F-~P~PkV~savv~l~ 181 (249)
T 3ftd_A 118 NKDCVP-LAVFMVQKEVAEKLQGKKDTGWLSVFV----RTFYDVNYVMTVPPRFF-VPPPKVQSAVIKLV 181 (249)
T ss_dssp TGGGCS-EEEEEEEHHHHHHHHTSSCCCHHHHHH----HHHEEEEEEEEECGGGE-ESCCSSCEEEEEEE
T ss_pred cCCCCc-eEEEEEeHHHHHHhhccccccHHHHHH----HhHEEEEEEEEEChHHc-cCCCCCeEEEEEEE
Confidence 433333 23333321 1111111 1222222 22244443 36788888 67666555555443
No 140
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=56.22 E-value=13 Score=29.24 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=33.9
Q ss_pred EEEEEeCcHHHHHHHHHhC----CCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNF----PRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.+.++|+++.+.+.-+.+. +...++.+|+.++. ++...+|+++..++
T Consensus 62 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~ 112 (227)
T 1ve3_A 62 EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS---FEDKTFDYVIFIDS 112 (227)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC---SCTTCEEEEEEESC
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCC---CCCCcEEEEEEcCc
Confidence 6789999998887776664 44556678877653 23336899998876
No 141
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=55.66 E-value=6.4 Score=32.98 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=37.0
Q ss_pred EEEEeCcHHHHHHHHHhCC---CCCccccCcccccccccc--CCCCcEEEeCCCC
Q psy3543 14 VTAIDINTSANSVYKHNFP---RTNLRGRNIQSFSIEEIN--AMSPDVILMSPPC 63 (250)
Q Consensus 14 v~a~did~~a~~~y~~N~~---~~~~~~~dI~~~~~~~~~--~~~~Dll~~gpPC 63 (250)
|.|+|+|+...+..+.++. +..++++|+.+++..++. ....+++++.+|=
T Consensus 46 v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 46 LTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp EEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHHHHTSCEEEEEECCT
T ss_pred EEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhcccCCceEEEECCCC
Confidence 7899999999999988875 344678899887654431 0135789999983
No 142
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=55.41 E-value=12 Score=30.00 Aligned_cols=53 Identities=9% Similarity=0.013 Sum_probs=34.1
Q ss_pred EEEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 12 EVVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
..|.++|+++.+.+.-+.|+. ...++.+|+.+..+.......+|+++...||.
T Consensus 79 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~ 137 (233)
T 2gpy_A 79 ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKG 137 (233)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECCCHH
Confidence 367899999999888777742 23345667665433211122689999877753
No 143
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=55.21 E-value=84 Score=25.57 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=16.9
Q ss_pred CcEEEEEEeCcHHHHHHHHHh
Q psy3543 10 SLEVVTAIDINTSANSVYKHN 30 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N 30 (250)
++..|.|+|+++.+.+.-+.+
T Consensus 77 ~~~~v~g~D~s~~~l~~a~~~ 97 (263)
T 2a14_A 77 SFQDITLSDFTDRNREELEKW 97 (263)
T ss_dssp TEEEEEEEESCHHHHHHHHHH
T ss_pred hhcceeeccccHHHHHHHHHH
Confidence 467799999999988876654
No 144
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=54.60 E-value=12 Score=31.84 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=35.4
Q ss_pred EEEEeCcHHHHHHHHHhC-CCCCccccCccccccccccCC---CCcEEEeCCC
Q psy3543 14 VTAIDINTSANSVYKHNF-PRTNLRGRNIQSFSIEEINAM---SPDVILMSPP 62 (250)
Q Consensus 14 v~a~did~~a~~~y~~N~-~~~~~~~~dI~~~~~~~~~~~---~~Dll~~gpP 62 (250)
|.++|+|+...+..+.++ ++..++++|+.+++..++... ..+.+++-+|
T Consensus 71 V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 71 LHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSIARPGDEPSLRIIGNLP 123 (279)
T ss_dssp EEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGGSCSSSSCCEEEEEECC
T ss_pred EEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhHhcccccCCceEEEEccC
Confidence 789999999999888873 344567899998876665320 2356777776
No 145
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=54.42 E-value=8.2 Score=34.72 Aligned_cols=54 Identities=24% Similarity=0.291 Sum_probs=37.3
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCC-----C--CCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFP-----R--TNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~-----~--~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
|..-|.++|+++.|.+..+.|.. + ..++++|+.++....+. ..+|+++.-|||.
T Consensus 76 ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~-~~fD~V~lDP~g~ 136 (392)
T 3axs_A 76 CVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWG-FGFDYVDLDPFGT 136 (392)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCS-SCEEEEEECCSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhC-CCCcEEEECCCcC
Confidence 35788999999999999988852 1 33456666554320122 2689999999864
No 146
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=53.96 E-value=45 Score=28.44 Aligned_cols=128 Identities=11% Similarity=0.081 Sum_probs=69.1
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCC----------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPR----------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARC 80 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~----------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~ 80 (250)
..-+.++|+|+.+.+.-+.|++. ..++.+|+.+.... ....+|+++..++-.. . ...+..
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD~Ii~d~~~~~-~-------~~~~~~ 170 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER--TEERYDVVIIDLTDPV-G-------EDNPAR 170 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH--CCCCEEEEEEECCCCB-S-------TTCGGG
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh--cCCCccEEEECCCCcc-c-------ccCcch
Confidence 45788999999999888877642 23456676654222 1226899999876421 0 001111
Q ss_pred hH-HHHHHHHc-cccCCCcEEEEccccC-C-CcchHHHHHHHHHHhCCCeEEEEEEccCCCCccc-cCceEEEEEEeCC
Q psy3543 81 TA-LSYLIETI-PAIPSLQCLLLENVKG-F-EGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPN-SRTRYYLIAKRSP 154 (250)
Q Consensus 81 ~l-~~~~~~ii-~~~~~P~~i~~ENV~~-~-~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq-~R~R~~lva~~~~ 154 (250)
.| ..++++.+ +.++ |.-+++=|... . ...+.+..+.+.|++..-.+...... +|. .-...|++|+++.
T Consensus 171 ~l~~~~~l~~~~~~Lk-pgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~-----vP~~~g~~~~~~as~~~ 243 (314)
T 1uir_A 171 LLYTVEFYRLVKAHLN-PGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNH-----IPGFFLNFGFLLASDAF 243 (314)
T ss_dssp GGSSHHHHHHHHHTEE-EEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEE-----EGGGTEEEEEEEEESSS
T ss_pred hccHHHHHHHHHHhcC-CCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEe-----cCCCCCeEEEEEEECCC
Confidence 22 12333322 3345 65444434322 1 23456788888888875444433221 232 2356788888764
No 147
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=53.94 E-value=10 Score=30.66 Aligned_cols=52 Identities=8% Similarity=0.006 Sum_probs=35.8
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
.|.++|+++.+.+.-+.|. .+..++.+|+.++.+..++...+|.++..+|..
T Consensus 60 ~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p 116 (218)
T 3dxy_A 60 DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDP 116 (218)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESCCC
T ss_pred eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCCCC
Confidence 5789999999877766552 344466788877644334444789999886654
No 148
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=53.89 E-value=16 Score=29.84 Aligned_cols=45 Identities=11% Similarity=0.228 Sum_probs=36.7
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSP 61 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gp 61 (250)
-+.++|+++.+.+.-+.+.+...++.+|+.++.. + ..+|+++...
T Consensus 74 ~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~---~-~~fD~v~~~~ 118 (263)
T 3pfg_A 74 TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL---G-RRFSAVTCMF 118 (263)
T ss_dssp EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC---S-CCEEEEEECT
T ss_pred eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc---c-CCcCEEEEcC
Confidence 4789999999999999998877777889887654 2 2789999865
No 149
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=53.66 E-value=18 Score=29.20 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=33.3
Q ss_pred EEEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
..|.++|+++.+.+.-+.|+. ...++.+|+.+..+..+. ..+|+++...+
T Consensus 96 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~fD~V~~~~~ 151 (232)
T 3ntv_A 96 IHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVND-KVYDMIFIDAA 151 (232)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTT-SCEEEEEEETT
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhcc-CCccEEEEcCc
Confidence 467899999998887777652 234567787765431222 27899996643
No 150
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=53.63 E-value=18 Score=29.68 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=45.6
Q ss_pred EEEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
..|.++|+++...+.-+.|+. ...++.+|+.+..+..-....+|+++...++..+ ...+..
T Consensus 89 ~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~~~~-------------~~~l~~ 155 (248)
T 3tfw_A 89 GQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDADKPNN-------------PHYLRW 155 (248)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSCGGGH-------------HHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCchHHH-------------HHHHHH
Confidence 367899999998887777752 2234566766543321111268999986653222 123334
Q ss_pred HHHHccccCCC-cEEEEcccc
Q psy3543 86 LIETIPAIPSL-QCLLLENVK 105 (250)
Q Consensus 86 ~~~ii~~~~~P-~~i~~ENV~ 105 (250)
+.+ .++ | -++++.||-
T Consensus 156 ~~~---~Lk-pGG~lv~~~~~ 172 (248)
T 3tfw_A 156 ALR---YSR-PGTLIIGDNVV 172 (248)
T ss_dssp HHH---TCC-TTCEEEEECCS
T ss_pred HHH---hcC-CCeEEEEeCCC
Confidence 444 344 5 578888884
No 151
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=53.58 E-value=92 Score=25.58 Aligned_cols=44 Identities=9% Similarity=0.228 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCeEEEEEEcc--CCCCcc-ccCceEEEEEEeCCC
Q psy3543 112 SRDLITSMLTRAGFRFQEFLLSP--TQFGVP-NSRTRYYLIAKRSPA 155 (250)
Q Consensus 112 ~~~~i~~~L~~~GY~v~~~il~a--~~~GvP-q~R~R~~lva~~~~~ 155 (250)
..+.+.+.|++.||.+.....-. ..|..+ ..=+|+|.++.++..
T Consensus 235 ~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (289)
T 2g72_A 235 SEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVG 281 (289)
T ss_dssp CHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEECC
T ss_pred CHHHHHHHHHHcCCeEEEeeEeeccccccccccCcceEEEEEEeccc
Confidence 46788899999999876543222 445433 244577766666554
No 152
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=52.07 E-value=16 Score=31.52 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=37.9
Q ss_pred EEEEEeCcHHHHHHHHHhCC----CCCccccCcccccc--ccccCCCCcEEEeCCCCchh
Q psy3543 13 VVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSI--EEINAMSPDVILMSPPCQPF 66 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~--~~~~~~~~Dll~~gpPCQ~f 66 (250)
.|.++|+|+.+.+.-+.|.. ...++++|..++.. .++....+|.++..+||..+
T Consensus 52 ~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D~gvSs~ 111 (301)
T 1m6y_A 52 RIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTY 111 (301)
T ss_dssp EEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHH
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEEEEcCccchh
Confidence 57899999999998888763 23356778776641 11111268999999998655
No 153
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=51.19 E-value=23 Score=28.89 Aligned_cols=104 Identities=12% Similarity=0.056 Sum_probs=53.2
Q ss_pred EEEEEEeCcHHHHHHHHHh-----------CCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchh
Q psy3543 12 EVVTAIDINTSANSVYKHN-----------FPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARC 80 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N-----------~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~ 80 (250)
..+.++|+++.+.+.-+.+ .++..++.+|+.+..+.-++...+|.++..+|..-+.....++.. ...
T Consensus 71 ~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~--~~~ 148 (235)
T 3ckk_A 71 TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRI--ISP 148 (235)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------C--CCH
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhh--hhH
Confidence 3578999999887654432 233445678887633333444468999888875433211111111 112
Q ss_pred hHHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCC
Q psy3543 81 TALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAG 124 (250)
Q Consensus 81 ~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~G 124 (250)
.++.++.++++-= -.+++.-.+. .....+++.|...|
T Consensus 149 ~~l~~~~~~LkpG--G~l~~~td~~-----~~~~~~~~~l~~~~ 185 (235)
T 3ckk_A 149 TLLAEYAYVLRVG--GLVYTITDVL-----ELHDWMCTHFEEHP 185 (235)
T ss_dssp HHHHHHHHHEEEE--EEEEEEESCH-----HHHHHHHHHHHTST
T ss_pred HHHHHHHHHCCCC--CEEEEEeCCH-----HHHHHHHHHHHHCC
Confidence 3555666666421 1333322222 24566777777776
No 154
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=51.08 E-value=11 Score=29.99 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=67.7
Q ss_pred HhhcCCCcEEEEEEeCcHHHHHHHHHhC-----------------CCCCccccCccccccccccCCCCcEEEeCCCCchh
Q psy3543 4 LSNHAFSLEVVTAIDINTSANSVYKHNF-----------------PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPF 66 (250)
Q Consensus 4 L~~~g~~~~~v~a~did~~a~~~y~~N~-----------------~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~f 66 (250)
|.+.| + .|.++|+++.+.+..+.+. ++..++++|+.++...+.. .+|+++...- +
T Consensus 40 la~~g--~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~--~fD~v~~~~~---l 111 (203)
T 1pjz_A 40 LSGQG--Y-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG--HCAAFYDRAA---M 111 (203)
T ss_dssp HHHHC--C-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH--SEEEEEEESC---G
T ss_pred HHHCC--C-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC--CEEEEEECcc---h
Confidence 44445 5 5789999999998887763 2344567888887654323 5899886432 1
Q ss_pred hhcCCCCCCCCchhhHHHHHHHHccccCCCc----EEEEccccCCCcc----hHHHHHHHHHHhCCCeEEEEEE-ccC--
Q psy3543 67 TRTGLQKDIADARCTALSYLIETIPAIPSLQ----CLLLENVKGFEGS----RSRDLITSMLTRAGFRFQEFLL-SPT-- 135 (250)
Q Consensus 67 S~ag~~~~~~d~r~~l~~~~~~ii~~~~~P~----~i~~ENV~~~~~~----~~~~~i~~~L~~~GY~v~~~il-~a~-- 135 (250)
.... .+.+...+.++.++++ |- ++.++--.+...+ -..+.+.+.|.+ ||.+....- +..
T Consensus 112 ~~l~-----~~~~~~~l~~~~r~Lk----pgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~~~~~~~ 181 (203)
T 1pjz_A 112 IALP-----ADMRERYVQHLEALMP----QACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQDTLHS 181 (203)
T ss_dssp GGSC-----HHHHHHHHHHHHHHSC----SEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEESSCTTT
T ss_pred hhCC-----HHHHHHHHHHHHHHcC----CCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEeccccchhc
Confidence 1110 1234445566666654 53 2222211111111 134566666766 777654322 111
Q ss_pred -----CCCccccCceEEEE
Q psy3543 136 -----QFGVPNSRTRYYLI 149 (250)
Q Consensus 136 -----~~GvPq~R~R~~lv 149 (250)
..|++.-.+++|.+
T Consensus 182 ~p~~~~~g~~~~~~~~~~~ 200 (203)
T 1pjz_A 182 SARGLKAGLERMDEHVYVL 200 (203)
T ss_dssp CHHHHHHTCSSCCEEEEEE
T ss_pred chhhhhcCcchhheeEEEE
Confidence 23555555666544
No 155
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=50.74 E-value=16 Score=29.70 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.2
Q ss_pred EEEEEEeCcHHHHHHHHHhC
Q psy3543 12 EVVTAIDINTSANSVYKHNF 31 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~ 31 (250)
..|.++|+++.+.+.-+.|.
T Consensus 78 ~~v~gvDis~~~l~~A~~~~ 97 (250)
T 1o9g_A 78 RQVIASDVDPAPLELAAKNL 97 (250)
T ss_dssp EEEEEEESCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHH
Confidence 46789999999988877654
No 156
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=50.60 E-value=19 Score=28.15 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=44.8
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHc
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETI 90 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii 90 (250)
+..+.++|+++.+.+..+.+.+...++.+|+.++. ++...+|++++...-.. ..+.. .++.++.+++
T Consensus 56 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~---------~~~~~-~~l~~~~~~L 122 (211)
T 2gs9_A 56 YPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALP---FPGESFDVVLLFTTLEF---------VEDVE-RVLLEARRVL 122 (211)
T ss_dssp CSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCC---SCSSCEEEEEEESCTTT---------CSCHH-HHHHHHHHHE
T ss_pred CCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCC---CCCCcEEEEEEcChhhh---------cCCHH-HHHHHHHHHc
Confidence 43678999999999999988866666778887653 33336899997643221 22332 4566666665
Q ss_pred c
Q psy3543 91 P 91 (250)
Q Consensus 91 ~ 91 (250)
+
T Consensus 123 ~ 123 (211)
T 2gs9_A 123 R 123 (211)
T ss_dssp E
T ss_pred C
Confidence 4
No 157
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=50.10 E-value=19 Score=29.60 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=34.3
Q ss_pred EEEEEEeCcHHHHHHHHHhCC---CCCccccCccccccccccCCCCcEEEeCCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFP---RTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~---~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
.-|.++|+|+.+.+..+.|+. +..++++|+.++...+ ...+ .+++.+|=
T Consensus 53 ~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~--~~~~-~vv~nlPy 104 (244)
T 1qam_A 53 NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK--NQSY-KIFGNIPY 104 (244)
T ss_dssp SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS--SCCC-EEEEECCG
T ss_pred CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCccc--CCCe-EEEEeCCc
Confidence 357899999999999998874 3346778887765322 1123 67888883
No 158
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=49.45 E-value=77 Score=23.46 Aligned_cols=98 Identities=10% Similarity=0.051 Sum_probs=55.0
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCCC-----CccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPRT-----NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~~-----~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
...+.++|+++.+.+.-+.|.... ..+.+|..+.-+ +.. ..+|+++.+.+... ..++.+
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~-~~~D~i~~~~~~~~--------------~~~l~~ 112 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFD-DVP-DNPDVIFIGGGLTA--------------PGVFAA 112 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGG-GCC-SCCSEEEECC-TTC--------------TTHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhh-ccC-CCCCEEEECCcccH--------------HHHHHH
Confidence 346789999999888877764221 134455433111 111 37899997665321 245566
Q ss_pred HHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE
Q psy3543 86 LIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 86 ~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
+.++++.- -.+++.... ......+...+++.|+.+....
T Consensus 113 ~~~~L~~g--G~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 113 AWKRLPVG--GRLVANAVT-----VESEQMLWALRKQFGGTISSFA 151 (178)
T ss_dssp HHHTCCTT--CEEEEEECS-----HHHHHHHHHHHHHHCCEEEEEE
T ss_pred HHHhcCCC--CEEEEEeec-----cccHHHHHHHHHHcCCeeEEEE
Confidence 66655421 133332221 2456677788888898876543
No 159
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=49.28 E-value=1.2e+02 Score=25.63 Aligned_cols=128 Identities=11% Similarity=0.040 Sum_probs=64.8
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCC---------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPR---------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~---------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
...+.++|+|+...+.-+.|++. ..++.+|..+.... ....+|+++..+|.. .... . ......
T Consensus 119 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~--~~~~fD~Ii~d~~~~-~~~~---~--~l~~~~ 190 (304)
T 2o07_A 119 VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ--NQDAFDVIITDSSDP-MGPA---E--SLFKES 190 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT--CSSCEEEEEEECC-----------------CH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh--CCCCceEEEECCCCC-CCcc---h--hhhHHH
Confidence 45788999999999988888742 23455666553221 122689999977632 1110 0 001122
Q ss_pred HHHHHHHHccccCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeC
Q psy3543 82 ALSYLIETIPAIPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153 (250)
Q Consensus 82 l~~~~~~ii~~~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~ 153 (250)
.+..+.+++ + |. .+++++..-+........+.+.+++.-=.+......-..|. .-.--|++|+++
T Consensus 191 ~l~~~~~~L---k-pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~---~g~~g~~~as~~ 256 (304)
T 2o07_A 191 YYQLMKTAL---K-EDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYP---SGQIGFMLCSKN 256 (304)
T ss_dssp HHHHHHHHE---E-EEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSG---GGEEEEEEEESS
T ss_pred HHHHHHhcc---C-CCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEecccc---CcceEEEEEeCC
Confidence 444444444 4 64 44455533333334455666666654223333322222231 124557888765
No 160
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=48.67 E-value=30 Score=28.50 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=33.0
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
-+.++|+++.+.+..+.+.. ...++.+|+.++.. +....+|++++...
T Consensus 92 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 92 QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS--HLETPVDLILFHAV 145 (285)
T ss_dssp EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG--GCSSCEEEEEEESC
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh--hcCCCceEEEECch
Confidence 47889999999888887752 22356777776642 22337899998654
No 161
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=48.46 E-value=14 Score=32.91 Aligned_cols=49 Identities=12% Similarity=0.237 Sum_probs=35.9
Q ss_pred EEEEEeCcHHHHHHHHHhCC----CCCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 13 VVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
-|.++|+++.+.+.-+.|.. ...++.+|+.+.... ...+|+++..||..
T Consensus 257 ~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~---~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 257 EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTE---EARFDIIVTNPPFH 309 (381)
T ss_dssp EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCT---TCCEEEEEECCCCC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcccc---CCCeEEEEECCchh
Confidence 57899999999888877753 334567777765432 23789999999964
No 162
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=48.15 E-value=49 Score=28.69 Aligned_cols=128 Identities=11% Similarity=0.040 Sum_probs=68.3
Q ss_pred EEEEEeCcHHHHHHHHHhCCCC-----CccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHH-HHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPRT-----NLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTAL-SYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~-----~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~-~~~ 86 (250)
-+.++|+|+...+.-+.+++.. .++.+|..++.. .++...+|+++...+... +. + ..|+ .++
T Consensus 115 ~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~-~~~~~~fDvIi~D~~~~~----~~------~-~~L~t~ef 182 (317)
T 3gjy_A 115 RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAE-SFTPASRDVIIRDVFAGA----IT------P-QNFTTVEF 182 (317)
T ss_dssp EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHH-TCCTTCEEEEEECCSTTS----CC------C-GGGSBHHH
T ss_pred EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHh-hccCCCCCEEEECCCCcc----cc------c-hhhhHHHH
Confidence 4678999999999999998632 345677665532 222236899998654321 11 1 1111 233
Q ss_pred HHHc-cccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCC
Q psy3543 87 IETI-PAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPA 155 (250)
Q Consensus 87 ~~ii-~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~ 155 (250)
++.+ +.++ |.-+++=|+..-.....+..++..|++.-=.+.........+|- .--=++++|++...
T Consensus 183 l~~~~r~Lk-pgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~--~~gN~Vl~As~~pl 249 (317)
T 3gjy_A 183 FEHCHRGLA-PGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIADPPMLKGR--RYGNIILMGSDTEF 249 (317)
T ss_dssp HHHHHHHEE-EEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEEECHHHHTTS--SCEEEEEEEESSCC
T ss_pred HHHHHHhcC-CCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEEEecCCCCCC--cCceEEEEEECCCC
Confidence 3322 2345 77777777754333345667777777652222221111111220 11135678877665
No 163
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=47.33 E-value=24 Score=34.18 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=44.5
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.++++|+|+.+.+.-+.|-.. ..+.++|+.++....-. ..+|+++.-||= |.+.+....-..++..+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~-~~~d~Iv~NPPY------G~Rlg~~~~l~~ly~~l 330 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPK-GPYGTVLSNPPY------GERLDSEPALIALHSLL 330 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTT-CCCCEEEECCCC------CC---CCHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccccc-CCCCEEEeCCCc------cccccchhHHHHHHHHH
Confidence 578999999999988888421 22456677665422111 158999999993 54433222333466666
Q ss_pred HHHccc
Q psy3543 87 IETIPA 92 (250)
Q Consensus 87 ~~ii~~ 92 (250)
.++++.
T Consensus 331 ~~~lk~ 336 (703)
T 3v97_A 331 GRIMKN 336 (703)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
No 164
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=45.96 E-value=72 Score=26.21 Aligned_cols=103 Identities=11% Similarity=0.027 Sum_probs=58.7
Q ss_pred EEEEEeCcHHHHHHHHHhC------CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF------PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~------~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.+.++|+++.+.+.-+.+. +...+..+|+.++. ++...+|+++....-..+ .+ ...++.++
T Consensus 107 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~---------~~-~~~~l~~~ 173 (297)
T 2o57_A 107 SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP---CEDNSYDFIWSQDAFLHS---------PD-KLKVFQEC 173 (297)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS---SCTTCEEEEEEESCGGGC---------SC-HHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC---CCCCCEeEEEecchhhhc---------CC-HHHHHHHH
Confidence 5788999998877666553 22345567776653 233368999876442221 22 33566677
Q ss_pred HHHccccCCCcEEEEccccC-CCc---------------chHHHHHHHHHHhCCCeEEEE
Q psy3543 87 IETIPAIPSLQCLLLENVKG-FEG---------------SRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 87 ~~ii~~~~~P~~i~~ENV~~-~~~---------------~~~~~~i~~~L~~~GY~v~~~ 130 (250)
.++++.- =.+++.+-... ... ......+.+.|++.||.+...
T Consensus 174 ~~~Lkpg--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 231 (297)
T 2o57_A 174 ARVLKPR--GVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRT 231 (297)
T ss_dssp HHHEEEE--EEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEE
T ss_pred HHHcCCC--eEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 7766531 14455443221 100 113456778888999886543
No 165
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=45.69 E-value=42 Score=26.53 Aligned_cols=93 Identities=11% Similarity=0.133 Sum_probs=53.2
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccc---cCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEI---NAMSPDVILMSPPCQPFTRTGLQKDIADARCTAL 83 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~---~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~ 83 (250)
.|.++|+++.+.+.-+.|+. ...++.+|..+..+..- ....+|+++...++..+. -.
T Consensus 85 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~--------------~~ 150 (221)
T 3u81_A 85 RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYL--------------PD 150 (221)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHH--------------HH
T ss_pred EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccch--------------HH
Confidence 57899999999888877642 13345677655432211 113689999875433221 11
Q ss_pred HHHHHHccccCCC-cEEEEccccCCCcchHHHHHHHHHHhCC
Q psy3543 84 SYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAG 124 (250)
Q Consensus 84 ~~~~~ii~~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~G 124 (250)
..+++.++.++ | -.+++.|+.- .....+.+.+++..
T Consensus 151 ~~~~~~~~~Lk-pgG~lv~~~~~~----~~~~~~~~~l~~~~ 187 (221)
T 3u81_A 151 TLLLEKCGLLR-KGTVLLADNVIV----PGTPDFLAYVRGSS 187 (221)
T ss_dssp HHHHHHTTCCC-TTCEEEESCCCC----CCCHHHHHHHHHCT
T ss_pred HHHHHhccccC-CCeEEEEeCCCC----cchHHHHHHHhhCC
Confidence 23444346666 6 6777888862 12244555555543
No 166
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=44.16 E-value=1.1e+02 Score=26.08 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=37.9
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.+|.+.+-++++++.+|.++...+.+...++... ...|+.++-. ..++|+++.+.|
T Consensus 36 ~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~-~~~~~~~ll~----~~~vD~V~i~tp 91 (340)
T 1zh8_A 36 PALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPA-VFDSYEELLE----SGLVDAVDLTLP 91 (340)
T ss_dssp HHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCE-EESCHHHHHH----SSCCSEEEECCC
T ss_pred HHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCc-ccCCHHHHhc----CCCCCEEEEeCC
Confidence 4566653468999999999998888877765422 3456655532 226788877766
No 167
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=44.02 E-value=93 Score=25.25 Aligned_cols=90 Identities=11% Similarity=0.036 Sum_probs=53.5
Q ss_pred EEEEEeCcHHHHHHHHHhC--------CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF--------PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALS 84 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~--------~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~ 84 (250)
.+.++|+++.+.+.-+.|. +...+..+|+.+.. ++...+|+++..+| ++ ...+.
T Consensus 126 ~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~---~~~~~~D~v~~~~~--------------~~-~~~l~ 187 (280)
T 1i9g_A 126 QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE---LPDGSVDRAVLDML--------------AP-WEVLD 187 (280)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC---CCTTCEEEEEEESS--------------CG-GGGHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC---CCCCceeEEEECCc--------------CH-HHHHH
Confidence 6789999999888777764 23335567776652 22236899998655 11 13555
Q ss_pred HHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHh-CCCeE
Q psy3543 85 YLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTR-AGFRF 127 (250)
Q Consensus 85 ~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~-~GY~v 127 (250)
++.++++ |.-.++=.++.. .....++..|++ .||..
T Consensus 188 ~~~~~L~----pgG~l~~~~~~~---~~~~~~~~~l~~~~~f~~ 224 (280)
T 1i9g_A 188 AVSRLLV----AGGVLMVYVATV---TQLSRIVEALRAKQCWTE 224 (280)
T ss_dssp HHHHHEE----EEEEEEEEESSH---HHHHHHHHHHHHHSSBCC
T ss_pred HHHHhCC----CCCEEEEEeCCH---HHHHHHHHHHHhcCCcCC
Confidence 6666654 433333233322 345667777776 67753
No 168
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=43.32 E-value=13 Score=33.01 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=33.6
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----------------C---CCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----------------R---TNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----------------~---~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
-|+++|+++.|.+.-+.|.. + ..++++|+.++... .. ..+|+++.-|||.
T Consensus 73 ~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~-~~-~~fD~I~lDP~~~ 142 (378)
T 2dul_A 73 EVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE-RH-RYFHFIDLDPFGS 142 (378)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH-ST-TCEEEEEECCSSC
T ss_pred eEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh-cc-CCCCEEEeCCCCC
Confidence 38999999999988887741 1 22345555544321 11 2689999999985
No 169
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=43.09 E-value=6.8 Score=30.62 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=30.6
Q ss_pred hHHhh-cCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEE-EeCCC
Q psy3543 2 ERLSN-HAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVI-LMSPP 62 (250)
Q Consensus 2 egL~~-~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll-~~gpP 62 (250)
+.|++ .| ++ |.|+|+++.|.. ++..||.+-..+-.. .+|++ ..-||
T Consensus 52 ~~La~~~g--~~-V~atDInp~Av~----------~v~dDiF~P~~~~Y~--~~DLIYsirPP 99 (153)
T 2k4m_A 52 DYIRKHSK--VD-LVLTDIKPSHGG----------IVRDDITSPRMEIYR--GAALIYSIRPP 99 (153)
T ss_dssp HHHHHHSC--CE-EEEECSSCSSTT----------EECCCSSSCCHHHHT--TEEEEEEESCC
T ss_pred HHHHHhCC--Ce-EEEEECCccccc----------eEEccCCCCcccccC--CcCEEEEcCCC
Confidence 34554 55 55 578999999888 467788764433223 67888 77777
No 170
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=42.75 E-value=32 Score=28.85 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=47.8
Q ss_pred HhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCcccccc---ccccCCCCcEEEeCCCCchhhhcCCCCCCCCchh
Q psy3543 4 LSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSI---EEINAMSPDVILMSPPCQPFTRTGLQKDIADARC 80 (250)
Q Consensus 4 L~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~---~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~ 80 (250)
|.+.| . -|.++|+++.+.+.-+.|.... .++.++.+++. .++.. .+|++++...-+.++. +...
T Consensus 63 La~~g--~-~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~-~fD~Vv~~~~l~~~~~--------~~~~ 129 (261)
T 3iv6_A 63 ALERG--A-SVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEIPKELAG-HFDFVLNDRLINRFTT--------EEAR 129 (261)
T ss_dssp HHHTT--C-EEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTT-CCSEEEEESCGGGSCH--------HHHH
T ss_pred HHhcC--C-EEEEEECCHHHHHHHHHHHHhc-cceeeeeecccccccccCC-CccEEEEhhhhHhCCH--------HHHH
Confidence 44444 4 5788999999999999998765 45677766654 33332 7899998766444321 1222
Q ss_pred hHHHHHHHHc
Q psy3543 81 TALSYLIETI 90 (250)
Q Consensus 81 ~l~~~~~~ii 90 (250)
..+.++.+++
T Consensus 130 ~~l~~l~~lL 139 (261)
T 3iv6_A 130 RACLGMLSLV 139 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 4556666665
No 171
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=42.36 E-value=18 Score=31.10 Aligned_cols=98 Identities=5% Similarity=-0.087 Sum_probs=58.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCC---CCccccCcccccccccc-CCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPR---TNLRGRNIQSFSIEEIN-AMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~---~~~~~~dI~~~~~~~~~-~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.+-+..+|.++.+..+.+.|+.. ..++..|..+.-..-.+ ....|+++.-|| -++ . ..+..+
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP------Ye~----k----~~~~~v 178 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS------YER----K----EEYKEI 178 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC------CCS----T----THHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC------CCC----C----cHHHHH
Confidence 46778899999999999999954 23455664432211112 125899999999 111 1 134444
Q ss_pred HHHcccc---C-CCcEEEEccccCCCcchHHHHHHHHHHhCCC
Q psy3543 87 IETIPAI---P-SLQCLLLENVKGFEGSRSRDLITSMLTRAGF 125 (250)
Q Consensus 87 ~~ii~~~---~-~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY 125 (250)
++.+.+. . .--++++=-|. .....+.+.+.|++.|-
T Consensus 179 l~~L~~~~~r~~~Gi~v~WYPi~---~~~~~~~~~~~l~~~~~ 218 (283)
T 2oo3_A 179 PYAIKNAYSKFSTGLYCVWYPVV---NKAWTEQFLRKMREISS 218 (283)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEES---SHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCccCCCeEEEEEEecc---chHHHHHHHHHHHhcCC
Confidence 4444331 1 12455554443 34556788888887765
No 172
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=41.59 E-value=14 Score=32.78 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=33.2
Q ss_pred EEEEEEeCcHHHHHHHHHhCC----C-------CCccccCccccccccccCCCCcEEEeCCCCchh
Q psy3543 12 EVVTAIDINTSANSVYKHNFP----R-------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPF 66 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~----~-------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~f 66 (250)
..|+|+|+++......+.|.. . ..+...|-+.+. ......+|.++.-+||.+-
T Consensus 173 ~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~--~~~~~~fD~VLlDaPCSg~ 236 (359)
T 4fzv_A 173 RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWG--ELEGDTYDRVLVDVPCTTD 236 (359)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHH--HHSTTCEEEEEEECCCCCH
T ss_pred CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcc--hhccccCCEEEECCccCCC
Confidence 357899999999888877642 1 111222322221 1222368999999999874
No 173
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=40.03 E-value=95 Score=25.90 Aligned_cols=102 Identities=7% Similarity=-0.049 Sum_probs=59.3
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
-|.++|+++.+.+.-+.|.. ...++.+|+.++. ++...+|+++...--.- . + ...++.++
T Consensus 142 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l~~---------~-~-~~~~l~~~ 207 (312)
T 3vc1_A 142 RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP---FDKGAVTASWNNESTMY---------V-D-LHDLFSEH 207 (312)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---CCTTCEEEEEEESCGGG---------S-C-HHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC---CCCCCEeEEEECCchhh---------C-C-HHHHHHHH
Confidence 47899999998887776632 2345677777653 33337899986432111 1 2 33466666
Q ss_pred HHHccccCCCcEEEEccccCC-C---c-------------chHHHHHHHHHHhCCCeEEEE
Q psy3543 87 IETIPAIPSLQCLLLENVKGF-E---G-------------SRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 87 ~~ii~~~~~P~~i~~ENV~~~-~---~-------------~~~~~~i~~~L~~~GY~v~~~ 130 (250)
.++++.- =.+++.+....- . . ......+.+.|++.||.+...
T Consensus 208 ~~~Lkpg--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~ 266 (312)
T 3vc1_A 208 SRFLKVG--GRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTI 266 (312)
T ss_dssp HHHEEEE--EEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEE
T ss_pred HHHcCCC--cEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEE
Confidence 6666431 255555533221 1 0 013467788899999886544
No 174
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=40.00 E-value=31 Score=27.71 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=36.9
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
.+.++|+++...+..+.+.++..+..+|+.++. +...+|+++....-+
T Consensus 59 ~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~----~~~~fD~v~~~~~l~ 106 (259)
T 2p35_A 59 VITGIDSDDDMLEKAADRLPNTNFGKADLATWK----PAQKADLLYANAVFQ 106 (259)
T ss_dssp SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC----CSSCEEEEEEESCGG
T ss_pred EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC----ccCCcCEEEEeCchh
Confidence 478899999999998888777667788888765 123689999866533
No 175
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=39.82 E-value=83 Score=26.36 Aligned_cols=103 Identities=15% Similarity=0.171 Sum_probs=60.3
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
-+.++|++ .+.+.-+.+.. ...+..+|+.+. .++. .+|+++....-..++ .+....++.++
T Consensus 191 ~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~-~~D~v~~~~~l~~~~--------~~~~~~~l~~~ 257 (335)
T 2r3s_A 191 EIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV---DYGN-DYDLVLLPNFLHHFD--------VATCEQLLRKI 257 (335)
T ss_dssp EEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS---CCCS-CEEEEEEESCGGGSC--------HHHHHHHHHHH
T ss_pred eEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC---CCCC-CCcEEEEcchhccCC--------HHHHHHHHHHH
Confidence 56789999 77776666532 133456666554 2333 489999865533331 11223455666
Q ss_pred HHHccccCCCcEEEEccccCCC---------------------cchHHHHHHHHHHhCCCeEEEE
Q psy3543 87 IETIPAIPSLQCLLLENVKGFE---------------------GSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 87 ~~ii~~~~~P~~i~~ENV~~~~---------------------~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
.+.++.- -.++++|.+..-. .....+.+.+.|++.||.+...
T Consensus 258 ~~~L~pg--G~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~ 320 (335)
T 2r3s_A 258 KTALAVE--GKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQL 320 (335)
T ss_dssp HHHEEEE--EEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred HHhCCCC--cEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeE
Confidence 6665421 2677787765421 0123567888899999987654
No 176
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=39.28 E-value=19 Score=33.00 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=50.4
Q ss_pred cEEEEEEeCcHHHHHHHHHhC--------------CCCCccccCcccccccc-ccCCCCcEEEeCCCCchhhhcCCCCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNF--------------PRTNLRGRNIQSFSIEE-INAMSPDVILMSPPCQPFTRTGLQKDI 75 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~--------------~~~~~~~~dI~~~~~~~-~~~~~~Dll~~gpPCQ~fS~ag~~~~~ 75 (250)
..-++|+|+++.+++.-+.|. +...++++|+.++...+ +. .+|++++.++| |.
T Consensus 197 ~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~--~aDVVf~Nn~~--F~-------- 264 (438)
T 3uwp_A 197 CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA--NTSVIFVNNFA--FG-------- 264 (438)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHH--TCSEEEECCTT--CC--------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccC--CccEEEEcccc--cC--------
Confidence 556899999998766555431 33456789998875432 34 68999998876 21
Q ss_pred CCchhhHHHHHHHHccccCCC--cEEEEccccC
Q psy3543 76 ADARCTALSYLIETIPAIPSL--QCLLLENVKG 106 (250)
Q Consensus 76 ~d~r~~l~~~~~~ii~~~~~P--~~i~~ENV~~ 106 (250)
.+.+ .. +.++.+.++ | ++++.|....
T Consensus 265 pdl~-~a---L~Ei~RvLK-PGGrIVssE~f~p 292 (438)
T 3uwp_A 265 PEVD-HQ---LKERFANMK-EGGRIVSSKPFAP 292 (438)
T ss_dssp HHHH-HH---HHHHHTTSC-TTCEEEESSCSSC
T ss_pred chHH-HH---HHHHHHcCC-CCcEEEEeecccC
Confidence 1222 22 334445566 5 8888888764
No 177
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=38.98 E-value=77 Score=26.91 Aligned_cols=96 Identities=9% Similarity=0.110 Sum_probs=51.4
Q ss_pred EEEEEEeCcHHHHHHHHHhCC----------------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFP----------------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDI 75 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~----------------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~ 75 (250)
..|.++|+++.+.+.-+.|.. ...+..+|+.+... .++...+|+++...|..
T Consensus 131 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-~~~~~~fD~V~~~~~~~----------- 198 (336)
T 2b25_A 131 GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-DIKSLTFDAVALDMLNP----------- 198 (336)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--------EEEEEECSSST-----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-ccCCCCeeEEEECCCCH-----------
Confidence 367899999999888777643 23345667765431 23323589999876521
Q ss_pred CCchhhHHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEE
Q psy3543 76 ADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 76 ~d~r~~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
. .++.+ +.+.++ |--.++=-++ .......+++.|.+.++.+...
T Consensus 199 ---~-~~l~~---~~~~Lk-pgG~lv~~~~---~~~~~~~~~~~l~~~~~~~~~~ 242 (336)
T 2b25_A 199 ---H-VTLPV---FYPHLK-HGGVCAVYVV---NITQVIELLDGIRTCELALSCE 242 (336)
T ss_dssp ---T-TTHHH---HGGGEE-EEEEEEEEES---SHHHHHHHHHHHHHHTCCEEEE
T ss_pred ---H-HHHHH---HHHhcC-CCcEEEEEeC---CHHHHHHHHHHHHhcCCCcccc
Confidence 1 12333 344455 6444441122 1234556677777666554433
No 178
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=38.86 E-value=51 Score=26.33 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=55.8
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.+.++|+++...+.-+.+.. ...+..+|+.++.. ...+|+++....... ..|. ..++.++
T Consensus 61 ~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~V~~~~~~~~---------~~~~-~~~l~~~ 126 (256)
T 1nkv_A 61 TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA----NEKCDVAACVGATWI---------AGGF-AGAEELL 126 (256)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC----SSCEEEEEEESCGGG---------TSSS-HHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc----CCCCCEEEECCChHh---------cCCH-HHHHHHH
Confidence 45899999998887776642 23355677776543 226899987433211 1122 2344444
Q ss_pred HHHccccCCC--cEEEEccccCCC----------------cchHHHHHHHHHHhCCCeEEEE
Q psy3543 87 IETIPAIPSL--QCLLLENVKGFE----------------GSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 87 ~~ii~~~~~P--~~i~~ENV~~~~----------------~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
.+ .++ | .+++.+....-. .......+.+.|++.||.+...
T Consensus 127 ~r---~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 127 AQ---SLK-PGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp TT---SEE-EEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred HH---HcC-CCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence 33 344 5 344444321100 1113467888899999987543
No 179
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=38.75 E-value=1.4e+02 Score=23.24 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=57.7
Q ss_pred EEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccccC
Q psy3543 15 TAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIP 94 (250)
Q Consensus 15 ~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~~~ 94 (250)
.++|+++.+.+..+.+ ...++..|+.++. ++...+|++++...-.. ..+. ..++.++.++++.-.
T Consensus 69 ~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~---------~~~~-~~~l~~~~~~L~pgG 133 (219)
T 1vlm_A 69 IGVEPSERMAEIARKR--GVFVLKGTAENLP---LKDESFDFALMVTTICF---------VDDP-ERALKEAYRILKKGG 133 (219)
T ss_dssp EEEESCHHHHHHHHHT--TCEEEECBTTBCC---SCTTCEEEEEEESCGGG---------SSCH-HHHHHHHHHHEEEEE
T ss_pred hccCCCHHHHHHHHhc--CCEEEEcccccCC---CCCCCeeEEEEcchHhh---------ccCH-HHHHHHHHHHcCCCc
Confidence 7899999999988887 3445677776653 33336899997643221 1232 245556666654211
Q ss_pred CCcEEEEccccC-C-----------------CcchHHHHHHHHHHhCCCeEEEE
Q psy3543 95 SLQCLLLENVKG-F-----------------EGSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 95 ~P~~i~~ENV~~-~-----------------~~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
.+++.+..+. . ...-..+.+.+.|++.||.+...
T Consensus 134 --~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 134 --YLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp --EEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred --EEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 2333221110 0 01124678889999999988654
No 180
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=38.50 E-value=36 Score=26.55 Aligned_cols=47 Identities=23% Similarity=0.190 Sum_probs=34.9
Q ss_pred EEEEEEeCcHHHHHHHHHhCCCC---CccccCccccccccccCCCCcEEEeCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFPRT---NLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~~---~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.-+.++|+++.+.+.-+.+.... .++.+|+.++.+ ...+|++++...
T Consensus 74 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~~~fD~v~~~~~ 123 (216)
T 3ofk_A 74 KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFST----AELFDLIVVAEV 123 (216)
T ss_dssp EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCC----SCCEEEEEEESC
T ss_pred CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCC----CCCccEEEEccH
Confidence 36789999999999999987543 456778877652 237899998633
No 181
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=38.42 E-value=2.4e+02 Score=26.08 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=34.6
Q ss_pred cEEEEEEeCcHHHHHHHHHh---CCC----CCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 11 LEVVTAIDINTSANSVYKHN---FPR----TNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N---~~~----~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
-..++++|+++.+...-+.| ++- ..+.++|.-..+........+|++++-||-.
T Consensus 248 ~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~ 308 (542)
T 3lkd_A 248 TVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYS 308 (542)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTT
T ss_pred CceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccEEEecCCcC
Confidence 35789999999998888777 221 1234555443321112223799999999954
No 182
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=38.17 E-value=27 Score=27.52 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=45.0
Q ss_pred EEEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccC---CCCcEEEeCCCCchhhhcCCCCCCCCchhhH
Q psy3543 12 EVVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINA---MSPDVILMSPPCQPFTRTGLQKDIADARCTA 82 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~---~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l 82 (250)
..|.++|+++.+.+.-+.|+. ...++.+|+.+..+..... ..+|+++..++. ......
T Consensus 90 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~-------------~~~~~~ 156 (225)
T 3tr6_A 90 GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADK-------------ANTDLY 156 (225)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCG-------------GGHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCH-------------HHHHHH
Confidence 467899999998887777652 1234566765543321110 368999976651 111224
Q ss_pred HHHHHHHccccCCC-cEEEEcccc
Q psy3543 83 LSYLIETIPAIPSL-QCLLLENVK 105 (250)
Q Consensus 83 ~~~~~~ii~~~~~P-~~i~~ENV~ 105 (250)
+..+.+++ + | -++++.|+-
T Consensus 157 l~~~~~~L---~-pgG~lv~~~~~ 176 (225)
T 3tr6_A 157 YEESLKLL---R-EGGLIAVDNVL 176 (225)
T ss_dssp HHHHHHHE---E-EEEEEEEECSS
T ss_pred HHHHHHhc---C-CCcEEEEeCCC
Confidence 44454444 4 5 567777774
No 183
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=37.51 E-value=66 Score=26.48 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=32.5
Q ss_pred EEEEEeCcHHHHHHHHHhCCC----CCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPR----TNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~----~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
-+.++|+++.+.+.-+.+... ..+..+|+.++.. ++ .+|++++...
T Consensus 49 ~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~---~~-~fD~v~~~~~ 98 (284)
T 3gu3_A 49 KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL---ND-KYDIAICHAF 98 (284)
T ss_dssp EEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC---SS-CEEEEEEESC
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc---CC-CeeEEEECCh
Confidence 568899999998887777542 3355677776543 22 6899998654
No 184
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=37.35 E-value=1.5e+02 Score=24.99 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=36.6
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.+|.+.. ++++++.+|.++...+.+...++... ...|+.++-. ..++|+++.+-|
T Consensus 22 ~~l~~~~-~~~l~av~d~~~~~~~~~~~~~~~~~-~~~~~~~ll~----~~~~D~V~i~tp 76 (330)
T 3e9m_A 22 AGLRESA-QAEVRGIASRRLENAQKMAKELAIPV-AYGSYEELCK----DETIDIIYIPTY 76 (330)
T ss_dssp HHHHHSS-SEEEEEEBCSSSHHHHHHHHHTTCCC-CBSSHHHHHH----CTTCSEEEECCC
T ss_pred HHHHhCC-CcEEEEEEeCCHHHHHHHHHHcCCCc-eeCCHHHHhc----CCCCCEEEEcCC
Confidence 4566643 58999999999988888888775432 2456655532 126788777666
No 185
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=36.90 E-value=31 Score=27.24 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=33.6
Q ss_pred EEEEEeCcHHHHHHHHHhCC-CCCccccCccccccccccCCCCcEEEeCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP-RTNLRGRNIQSFSIEEINAMSPDVILMSP 61 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-~~~~~~~dI~~~~~~~~~~~~~Dll~~gp 61 (250)
.+.++|+++.+.+.-+.+.+ ...++.+|+.++. +...+|++++..
T Consensus 66 ~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~----~~~~fD~v~~~~ 111 (250)
T 2p7i_A 66 DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ----LPRRYDNIVLTH 111 (250)
T ss_dssp CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC----CSSCEEEEEEES
T ss_pred cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcC----cCCcccEEEEhh
Confidence 47889999999999998887 4445677877662 223689999764
No 186
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=36.46 E-value=15 Score=33.33 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=51.7
Q ss_pred EEEEEeCcHHHHHHHHHhCC-------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP-------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
-|.++|+++.+.+.-++|.. +..++++|+.+.... +....+|+++.-||=.+- ..|+.-..++-. --+..
T Consensus 117 ~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~~~~fDvV~lDPPrr~~-~~grv~~led~~-P~l~~ 193 (410)
T 3ll7_A 117 QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IKTFHPDYIYVDPARRSG-ADKRVYAIADCE-PDLIP 193 (410)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HHHHCCSEEEECCEEC------CCCCGGGEE-SCHHH
T ss_pred EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-ccCCCceEEEECCCCcCC-CCceEEehhhcC-CCHHH
Confidence 67899999999999888853 233567787765322 111268999999995431 111111222211 13344
Q ss_pred HHHHccccCCCcEEEEccccCCC
Q psy3543 86 LIETIPAIPSLQCLLLENVKGFE 108 (250)
Q Consensus 86 ~~~ii~~~~~P~~i~~ENV~~~~ 108 (250)
+.+.+...- +.+++---|++-
T Consensus 194 ~~~~l~~~~--~~~~vK~sP~ld 214 (410)
T 3ll7_A 194 LATELLPFC--SSILAKLSPMID 214 (410)
T ss_dssp HHHHHGGGS--SEEEEEECTTSC
T ss_pred HHHHHHhhC--CcEEEEcCCCCC
Confidence 555444433 455666677763
No 187
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=36.06 E-value=24 Score=29.15 Aligned_cols=54 Identities=19% Similarity=0.080 Sum_probs=36.8
Q ss_pred HhhcCCCcEEEEEEeCcHHHHHHHHHhCC----CCCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 4 LSNHAFSLEVVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 4 L~~~g~~~~~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
|.+.| . -|.++|+++.+.+.-+.+.. ...++.+|+.+... ...+|++++..+..
T Consensus 138 l~~~g--~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~----~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 138 LSLLG--Y-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI----QENYDFIVSTVVFM 195 (286)
T ss_dssp HHHTT--C-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC----CSCEEEEEECSSGG
T ss_pred HHHCC--C-eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc----cCCccEEEEccchh
Confidence 44444 4 57899999998887777643 33455677776544 22789999987644
No 188
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=35.70 E-value=54 Score=25.71 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=45.2
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----C-CCccccCccccccccccC--CCCcEEEeCCCCchhhhcCCCCCCCCchhhHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----R-TNLRGRNIQSFSIEEINA--MSPDVILMSPPCQPFTRTGLQKDIADARCTALS 84 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~-~~~~~~dI~~~~~~~~~~--~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~ 84 (250)
.+.++|+++...+.-+.|+. + ..++.+|+.+..+.-... ..+|+++...++..+ ...+.
T Consensus 85 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~~~-------------~~~l~ 151 (223)
T 3duw_A 85 RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNN-------------PAYFE 151 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGGGH-------------HHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcHHH-------------HHHHH
Confidence 67899999998887777652 1 234566765543221110 258999988774321 12333
Q ss_pred HHHHHccccCCC-cEEEEcccc
Q psy3543 85 YLIETIPAIPSL-QCLLLENVK 105 (250)
Q Consensus 85 ~~~~ii~~~~~P-~~i~~ENV~ 105 (250)
.+.++ ++ | -++++.|+-
T Consensus 152 ~~~~~---L~-pgG~lv~~~~~ 169 (223)
T 3duw_A 152 WALKL---SR-PGTVIIGDNVV 169 (223)
T ss_dssp HHHHT---CC-TTCEEEEESCS
T ss_pred HHHHh---cC-CCcEEEEeCCC
Confidence 44443 44 5 577788875
No 189
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=35.40 E-value=45 Score=27.06 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=34.7
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSP 61 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gp 61 (250)
.+.++|+++.+.+.-+.+.+...+...|+.++. ++...+|+++...
T Consensus 111 ~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~ 156 (269)
T 1p91_A 111 TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP---FSDTSMDAIIRIY 156 (269)
T ss_dssp EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCS---BCTTCEEEEEEES
T ss_pred eEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCC---CCCCceeEEEEeC
Confidence 578999999999999988877666777877653 2223689998643
No 190
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=35.03 E-value=59 Score=26.23 Aligned_cols=46 Identities=20% Similarity=0.438 Sum_probs=34.4
Q ss_pred cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEE-ccCCCCccccCceEEEEEE
Q psy3543 97 QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLL-SPTQFGVPNSRTRYYLIAK 151 (250)
Q Consensus 97 ~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il-~a~~~GvPq~R~R~~lva~ 151 (250)
--+++||-|| .+..+...|.+.||++....+ ...+.|+ .|+.++..
T Consensus 32 LsVlVeN~pG-----vLaRItglfsrRG~NI~SLtV~~ted~gi----sRitIvV~ 78 (193)
T 2fgc_A 32 VSMLVHNKPG-----VMRKVANLFARRGFNISSITVGESETPGL----SRLVIMVK 78 (193)
T ss_dssp EEEEEECCTT-----HHHHHHHHHHTTTCEEEEEEEEECSSTTE----EEEEEEEE
T ss_pred EEEEECCCCh-----HHHHHHHHHHHCCceEEEEEeeccCCCCE----EEEEEEEE
Confidence 4578999999 578899999999999987654 4556653 56655554
No 191
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=34.24 E-value=34 Score=25.81 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=32.3
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----C--CCccccCccccccccccCCCCcEEEeCCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----R--TNLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~--~~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
.+.++|+++.+.+..+.|.. + ..++.+|+.+... ...+|++++.+|-
T Consensus 76 ~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~~ 129 (194)
T 1dus_A 76 STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK----DRKYNKIITNPPI 129 (194)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT----TSCEEEEEECCCS
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc----cCCceEEEECCCc
Confidence 67899999999888777642 2 3345566655322 2368999998774
No 192
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=34.21 E-value=1.9e+02 Score=23.45 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=57.3
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.|.++|+++...+.-+.+.. ...+..+|+.++. ..+|+++....-..+ +. +....++.++
T Consensus 89 ~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------~~fD~v~~~~~l~~~---~~-----~~~~~~l~~~ 154 (287)
T 1kpg_A 89 NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD------EPVDRIVSIGAFEHF---GH-----ERYDAFFSLA 154 (287)
T ss_dssp EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC------CCCSEEEEESCGGGT---CT-----TTHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC------CCeeEEEEeCchhhc---Ch-----HHHHHHHHHH
Confidence 67899999998887777643 2234456665442 278999876432221 10 1223456666
Q ss_pred HHHccccCCCcEEEEccccCCC-----------------------------cchHHHHHHHHHHhCCCeEEEEE
Q psy3543 87 IETIPAIPSLQCLLLENVKGFE-----------------------------GSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 87 ~~ii~~~~~P~~i~~ENV~~~~-----------------------------~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
.++++.- =.+++.+-...-. .-.....+.+.|++.|+.+....
T Consensus 155 ~~~Lkpg--G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 226 (287)
T 1kpg_A 155 HRLLPAD--GVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQ 226 (287)
T ss_dssp HHHSCTT--CEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEE
T ss_pred HHhcCCC--CEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEE
Confidence 6665421 1344433221100 00135677788888999876554
No 193
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=34.18 E-value=33 Score=27.08 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=44.5
Q ss_pred EEEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccC----CCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543 12 EVVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINA----MSPDVILMSPPCQPFTRTGLQKDIADARCT 81 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~----~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~ 81 (250)
..+.++|+++.+.+.-+.|+. ...++.+|+.+..+. +.. ..+|+++..+|- .....
T Consensus 95 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~-~~~~~~~~~~D~v~~d~~~-------------~~~~~ 160 (229)
T 2avd_A 95 GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDE-LLAAGEAGTFDVAVVDADK-------------ENCSA 160 (229)
T ss_dssp CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH-HHHTTCTTCEEEEEECSCS-------------TTHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHH-HHhcCCCCCccEEEECCCH-------------HHHHH
Confidence 367899999998887777652 223455666544221 210 268999987660 11123
Q ss_pred HHHHHHHHccccCCC-cEEEEcccc
Q psy3543 82 ALSYLIETIPAIPSL-QCLLLENVK 105 (250)
Q Consensus 82 l~~~~~~ii~~~~~P-~~i~~ENV~ 105 (250)
++..+.+++ + | -.+++.|+-
T Consensus 161 ~l~~~~~~L---~-pgG~lv~~~~~ 181 (229)
T 2avd_A 161 YYERCLQLL---R-PGGILAVLRVL 181 (229)
T ss_dssp HHHHHHHHE---E-EEEEEEEECCS
T ss_pred HHHHHHHHc---C-CCeEEEEECCC
Confidence 445555554 3 4 467777764
No 194
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=34.08 E-value=35 Score=29.21 Aligned_cols=55 Identities=7% Similarity=0.070 Sum_probs=37.2
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCC
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
+|+... ++++++.+|.++...+.+...|+-.. ...|.+++-.+ .++|+++.+.|=
T Consensus 42 ~~~~~~-~~~lvav~d~~~~~a~~~a~~~g~~~-~y~d~~ell~~----~~iDaV~I~tP~ 96 (350)
T 4had_A 42 AIQDAE-NCVVTAIASRDLTRAREMADRFSVPH-AFGSYEEMLAS----DVIDAVYIPLPT 96 (350)
T ss_dssp HHHHCS-SEEEEEEECSSHHHHHHHHHHHTCSE-EESSHHHHHHC----SSCSEEEECSCG
T ss_pred HHHhCC-CeEEEEEECCCHHHHHHHHHHcCCCe-eeCCHHHHhcC----CCCCEEEEeCCC
Confidence 455543 58999999999998888888776433 34566665432 267887666663
No 195
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=34.00 E-value=1.9e+02 Score=23.92 Aligned_cols=44 Identities=9% Similarity=0.130 Sum_probs=30.1
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.|.++|+++...+.-+.+... ..+..+|+.++ + ..+|+++....
T Consensus 115 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~fD~v~~~~~ 164 (318)
T 2fk8_A 115 NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-----A-EPVDRIVSIEA 164 (318)
T ss_dssp EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-----C-CCCSEEEEESC
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-----C-CCcCEEEEeCh
Confidence 578899999998877776432 23445666554 2 26899987654
No 196
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=33.91 E-value=1.8e+02 Score=23.31 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=70.7
Q ss_pred HhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCc-cccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhH
Q psy3543 4 LSNHAFSLEVVTAIDINTSANSVYKHNFPRTNL-RGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTA 82 (250)
Q Consensus 4 L~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~-~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l 82 (250)
|.+.| ..-|.|+|+++...+.-..+.+.... -..+++.+...++....+|........ +.. ..+
T Consensus 55 la~~g--~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~---~~l----------~~~ 119 (232)
T 3opn_A 55 MLQNG--AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSF---ISL----------DLI 119 (232)
T ss_dssp HHHTT--CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSS---SCG----------GGT
T ss_pred HHhcC--CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEh---hhH----------HHH
Confidence 44444 44789999999887765666554221 123555555455543113443332221 110 346
Q ss_pred HHHHHHHccccCCCcEEEE-----ccc------cCCCcc-----hHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceE
Q psy3543 83 LSYLIETIPAIPSLQCLLL-----ENV------KGFEGS-----RSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRY 146 (250)
Q Consensus 83 ~~~~~~ii~~~~~P~~i~~-----ENV------~~~~~~-----~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~ 146 (250)
+.++.++++.= =.++++ |-. .|+... ...+.+.+.|++.||.+......+..- |.....+
T Consensus 120 l~~i~rvLkpg--G~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g--~~gn~e~ 195 (232)
T 3opn_A 120 LPPLYEILEKN--GEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKG--GAGNVEF 195 (232)
T ss_dssp HHHHHHHSCTT--CEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCB--TTTBCCE
T ss_pred HHHHHHhccCC--CEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCC--CCCCHHH
Confidence 66777766531 144444 111 122111 245678889999999988766655432 3344556
Q ss_pred EEEEEeCCC
Q psy3543 147 YLIAKRSPA 155 (250)
Q Consensus 147 ~lva~~~~~ 155 (250)
++.+.+.+.
T Consensus 196 l~~~~~~~~ 204 (232)
T 3opn_A 196 LVHLLKDGK 204 (232)
T ss_dssp EEEEEESSC
T ss_pred HHHHhhccC
Confidence 666665443
No 197
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=33.91 E-value=53 Score=28.51 Aligned_cols=48 Identities=4% Similarity=0.058 Sum_probs=35.0
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
++++++.+|.++...+.+...++... ...|+.++-.+ .++|+++.+-|
T Consensus 50 ~~~lvav~d~~~~~a~~~a~~~~~~~-~~~~~~~ll~~----~~vD~V~I~tp 97 (361)
T 3u3x_A 50 GARLAGFHEKDDALAAEFSAVYADAR-RIATAEEILED----ENIGLIVSAAV 97 (361)
T ss_dssp TCEEEEEECSCHHHHHHHHHHSSSCC-EESCHHHHHTC----TTCCEEEECCC
T ss_pred CcEEEEEEcCCHHHHHHHHHHcCCCc-ccCCHHHHhcC----CCCCEEEEeCC
Confidence 48999999999999998888887544 34566655432 25788777666
No 198
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=33.80 E-value=1.8e+02 Score=23.21 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=56.7
Q ss_pred EEEEEeCcHHHHHHHHHhCC------CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP------RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.|.++|+++...+.-+.+.. ...+..+|+.++. ++...+|+++....-.. ..+. ..++.++
T Consensus 86 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~---------~~~~-~~~l~~~ 152 (273)
T 3bus_A 86 RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP---FEDASFDAVWALESLHH---------MPDR-GRALREM 152 (273)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---SCTTCEEEEEEESCTTT---------SSCH-HHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC---CCCCCccEEEEechhhh---------CCCH-HHHHHHH
Confidence 57889999988777666532 1334566776653 22336899987544222 1222 2455555
Q ss_pred HHHccccCCC--cEEEEccccC-CC------------------cchHHHHHHHHHHhCCCeEEEEE
Q psy3543 87 IETIPAIPSL--QCLLLENVKG-FE------------------GSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 87 ~~ii~~~~~P--~~i~~ENV~~-~~------------------~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
.+++ + | .+++.+-... -. .......+.+.|++.||.+....
T Consensus 153 ~~~L---~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 214 (273)
T 3bus_A 153 ARVL---R-PGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTV 214 (273)
T ss_dssp HTTE---E-EEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHc---C-CCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEE
Confidence 5444 3 4 3444443221 00 01123677888889999876443
No 199
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=33.58 E-value=2.1e+02 Score=23.99 Aligned_cols=56 Identities=9% Similarity=0.069 Sum_probs=36.7
Q ss_pred hHHhhcC-CCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 2 ERLSNHA-FSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 2 egL~~~g-~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
++|...+ .++++++.+|.++...+.+...++-.. ...|..++-.+ .++|+++.+-|
T Consensus 19 ~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~-~~~~~~~ll~~----~~vD~V~i~tp 75 (334)
T 3ohs_X 19 AVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPK-AYGSYEELAKD----PNVEVAYVGTQ 75 (334)
T ss_dssp HHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSC-EESSHHHHHHC----TTCCEEEECCC
T ss_pred HHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCc-ccCCHHHHhcC----CCCCEEEECCC
Confidence 3555543 357999999999988888877765432 34566555332 26788777666
No 200
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=32.03 E-value=1.5e+02 Score=25.16 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=55.6
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CC-CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PR-TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~-~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
-+.++|+ +...+.-+.+. ++ ..+..+|+.+. .++ +.|+++.......++. +....++.++
T Consensus 216 ~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~--~~D~v~~~~vlh~~~d--------~~~~~~l~~~ 281 (359)
T 1x19_A 216 DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE---SYP--EADAVLFCRILYSANE--------QLSTIMCKKA 281 (359)
T ss_dssp EEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS---CCC--CCSEEEEESCGGGSCH--------HHHHHHHHHH
T ss_pred eEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC---CCC--CCCEEEEechhccCCH--------HHHHHHHHHH
Confidence 4568999 87776666553 22 33456676654 233 3499988654333221 1122344444
Q ss_pred HHHccccCCCcEEEEccccCC----------------Ccc------hHHHHHHHHHHhCCCeEEEE
Q psy3543 87 IETIPAIPSLQCLLLENVKGF----------------EGS------RSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 87 ~~ii~~~~~P~~i~~ENV~~~----------------~~~------~~~~~i~~~L~~~GY~v~~~ 130 (250)
.+.++. . -+++++|.+..- ..+ ...+.+.+.|++.||.+...
T Consensus 282 ~~~L~p-g-G~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~ 345 (359)
T 1x19_A 282 FDAMRS-G-GRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM 345 (359)
T ss_dssp HTTCCT-T-CEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEE
T ss_pred HHhcCC-C-CEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEE
Confidence 444331 1 266677755320 001 34567788888999987544
No 201
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=31.96 E-value=48 Score=27.54 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=44.7
Q ss_pred cEEEEEEeCcHHHHHHHHHh-------CCCCCccccCcccccccc---ccCCCCcEEEeCCCCchhhhcCCCCCCCCchh
Q psy3543 11 LEVVTAIDINTSANSVYKHN-------FPRTNLRGRNIQSFSIEE---INAMSPDVILMSPPCQPFTRTGLQKDIADARC 80 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N-------~~~~~~~~~dI~~~~~~~---~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~ 80 (250)
...|.++|+++...+..+.+ .+...++.+|+.++...+ +....+|++++.....-+ |. .
T Consensus 61 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~----------~~-~ 129 (299)
T 3g5t_A 61 FEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF----------DF-E 129 (299)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS----------CH-H
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh----------CH-H
Confidence 45678999999988877776 344456678888765322 222378999987542221 22 2
Q ss_pred hHHHHHHHHcc
Q psy3543 81 TALSYLIETIP 91 (250)
Q Consensus 81 ~l~~~~~~ii~ 91 (250)
.++.++.++++
T Consensus 130 ~~l~~~~~~Lk 140 (299)
T 3g5t_A 130 KFQRSAYANLR 140 (299)
T ss_dssp HHHHHHHHHEE
T ss_pred HHHHHHHHhcC
Confidence 46666666665
No 202
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=31.91 E-value=22 Score=31.43 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=32.7
Q ss_pred EEEEEEeCcHHHHHHHHHhCCC--------CCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 12 EVVTAIDINTSANSVYKHNFPR--------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~--------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
..|.++|+++.+.+.-+.|... ..++..|+.+ .++...+|+++..||..
T Consensus 247 ~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~----~~~~~~fD~Ii~nppfh 303 (375)
T 4dcm_A 247 AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS----GVEPFRFNAVLCNPPFH 303 (375)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT----TCCTTCEEEEEECCCC-
T ss_pred CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc----cCCCCCeeEEEECCCcc
Confidence 3578999999998887777532 1124555544 23333789999999964
No 203
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=31.24 E-value=43 Score=26.66 Aligned_cols=86 Identities=5% Similarity=-0.051 Sum_probs=49.2
Q ss_pred EEEEEeCcHHHHHHHHHhC------CCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNF------PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~------~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.+.++|+++.+.+.-+.|. +...+..+|+.+... +...+|+++..+| ++ ...+.++
T Consensus 115 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~~~--------------~~-~~~l~~~ 176 (248)
T 2yvl_A 115 EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV---PEGIFHAAFVDVR--------------EP-WHYLEKV 176 (248)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC---CTTCBSEEEECSS--------------CG-GGGHHHH
T ss_pred EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc---CCCcccEEEECCc--------------CH-HHHHHHH
Confidence 5789999999988877764 223345566665431 2236899998665 22 2355666
Q ss_pred HHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhC
Q psy3543 87 IETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRA 123 (250)
Q Consensus 87 ~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~ 123 (250)
.++++.- -.+++..... .....+.+.|++.
T Consensus 177 ~~~L~~g--G~l~~~~~~~-----~~~~~~~~~l~~~ 206 (248)
T 2yvl_A 177 HKSLMEG--APVGFLLPTA-----NQVIKLLESIENY 206 (248)
T ss_dssp HHHBCTT--CEEEEEESSH-----HHHHHHHHHSTTT
T ss_pred HHHcCCC--CEEEEEeCCH-----HHHHHHHHHHHhh
Confidence 6665421 1333333211 3455666666665
No 204
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=30.31 E-value=2.2e+02 Score=25.27 Aligned_cols=133 Identities=8% Similarity=0.029 Sum_probs=72.5
Q ss_pred EEEEEEeCcHHHHHHHHHhCCCCC-------------ccccCccccccccc-cCCCCcEEEeCCCCchhhhcCCCCCCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFPRTN-------------LRGRNIQSFSIEEI-NAMSPDVILMSPPCQPFTRTGLQKDIAD 77 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~~~-------------~~~~dI~~~~~~~~-~~~~~Dll~~gpPCQ~fS~ag~~~~~~d 77 (250)
+.|..+|||+...+.-+..+|... ++.+|-.+.-.+.. ....+|+++.-.+=.+.|.. ...
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~-----p~g 303 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTS-----PEE 303 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC--------
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCc-----ccC
Confidence 567889999999999888877521 12233322211100 11268999987652222211 111
Q ss_pred chhhHH-HHHHHHcc-ccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE--EccCCCCccccCceEEEEEEeC
Q psy3543 78 ARCTAL-SYLIETIP-AIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL--LSPTQFGVPNSRTRYYLIAKRS 153 (250)
Q Consensus 78 ~r~~l~-~~~~~ii~-~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i--l~a~~~GvPq~R~R~~lva~~~ 153 (250)
+-..|| .++++.++ .++ |.-+++=+.-.....+.+..+.+.|++..-.+.... ..--.|+ -...|++|+++
T Consensus 304 ~a~~Lft~eFy~~~~~~L~-p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~----~~W~F~~aSK~ 378 (381)
T 3c6k_A 304 DSTWEFLRLILDLSMKVLK-QDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYL----ELWVFYTVWKK 378 (381)
T ss_dssp -CHHHHHHHHHHHHHHTEE-EEEEEEEEEEETTCHHHHHHHHHHHTTSSSCEEEEEEEECCGGGS----SCEEEEEEEEC
T ss_pred cchHHHHHHHHHHHHHhcC-CCCEEEEecCCCcchhHHHHHHHHHHHhCCcceEeeEEEEecCCC----CceeeeEEECC
Confidence 223455 35666554 355 877776543222223567788888988755554322 2222342 25789999886
Q ss_pred C
Q psy3543 154 P 154 (250)
Q Consensus 154 ~ 154 (250)
.
T Consensus 379 ~ 379 (381)
T 3c6k_A 379 A 379 (381)
T ss_dssp C
T ss_pred C
Confidence 4
No 205
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=30.01 E-value=65 Score=24.71 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=32.0
Q ss_pred EEEEEeCcHHHHHHHHHhC----CCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNF----PRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.+.++|+++.+.+.-+.+. +...++..|+.++. ++...+|++++...
T Consensus 48 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 48 KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP---FKDESMSFVYSYGT 98 (209)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC---SCTTCEEEEEECSC
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC---CCCCceeEEEEcCh
Confidence 5789999998877766552 34456677877653 33336899997644
No 206
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=29.39 E-value=28 Score=28.06 Aligned_cols=75 Identities=11% Similarity=0.006 Sum_probs=45.0
Q ss_pred EEEEEeCcHHHHHHHHHhCCC-------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPR-------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSY 85 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~-------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~ 85 (250)
.|.++|+++...+.-+.|+.. ..++.+|..++.+ .++...+|+++...+.. .....+..
T Consensus 83 ~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~-~~~~~~fD~V~~d~~~~-------------~~~~~l~~ 148 (221)
T 3dr5_A 83 TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS-RLANDSYQLVFGQVSPM-------------DLKALVDA 148 (221)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG-GSCTTCEEEEEECCCTT-------------THHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH-HhcCCCcCeEEEcCcHH-------------HHHHHHHH
Confidence 578899999988888777532 2344566655432 22223789998764311 11124445
Q ss_pred HHHHccccCCC-cEEEEcccc
Q psy3543 86 LIETIPAIPSL-QCLLLENVK 105 (250)
Q Consensus 86 ~~~ii~~~~~P-~~i~~ENV~ 105 (250)
+.+++ + | -++++.||-
T Consensus 149 ~~~~L---k-pGG~lv~dn~~ 165 (221)
T 3dr5_A 149 AWPLL---R-RGGALVLADAL 165 (221)
T ss_dssp HHHHE---E-EEEEEEETTTT
T ss_pred HHHHc---C-CCcEEEEeCCC
Confidence 55544 4 5 678888884
No 207
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=29.10 E-value=1.6e+02 Score=24.23 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=30.4
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
-|.++|+++...+.-+.+... ..+..+|+.++ ...+|+++....
T Consensus 97 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~fD~v~~~~~ 146 (302)
T 3hem_A 97 NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------DEPVDRIVSLGA 146 (302)
T ss_dssp EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC------CCCCSEEEEESC
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc------CCCccEEEEcch
Confidence 478999999988877776432 23456677655 237899997644
No 208
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=29.07 E-value=1.9e+02 Score=22.04 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=33.0
Q ss_pred EEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
..+.++|+++.+.+.-+.+.. .++..|+.+... .++...+|+++++..
T Consensus 55 ~~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~-~~~~~~fD~v~~~~~ 102 (230)
T 3cc8_A 55 TRVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDM-PYEEEQFDCVIFGDV 102 (230)
T ss_dssp CEEEEEESSHHHHHHHHTTSS--EEEESCTTTCCC-CSCTTCEEEEEEESC
T ss_pred CeEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCC-CCCCCccCEEEECCh
Confidence 357899999999988887764 346778775422 233336899998644
No 209
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=29.07 E-value=1.6e+02 Score=21.18 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=30.3
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCcccccc-----ccccCCCCcEEEeCCCCchh
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSI-----EEINAMSPDVILMSPPCQPF 66 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~-----~~~~~~~~Dll~~gpPCQ~f 66 (250)
.+.++|+++ .... +...++..|+.+... ..++...+|+++..+|+..+
T Consensus 49 ~v~~~D~~~-~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~ 101 (180)
T 1ej0_A 49 RIIACDLLP-MDPI-----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMS 101 (180)
T ss_dssp EEEEEESSC-CCCC-----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred eEEEEECcc-cccc-----CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCcccc
Confidence 567899998 5432 334456677776531 11333468999999987643
No 210
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=29.04 E-value=50 Score=31.62 Aligned_cols=51 Identities=10% Similarity=0.229 Sum_probs=32.9
Q ss_pred HHhhcCCCcEE-EEEEeCcHHHHHHHHH---h-CCC-CCccccCccccccccccCCCCcEEEe
Q psy3543 3 RLSNHAFSLEV-VTAIDINTSANSVYKH---N-FPR-TNLRGRNIQSFSIEEINAMSPDVILM 59 (250)
Q Consensus 3 gL~~~g~~~~~-v~a~did~~a~~~y~~---N-~~~-~~~~~~dI~~~~~~~~~~~~~Dll~~ 59 (250)
|.++++ .++ |+|+|-++.|..+.+. | +.+ ..++++|+++++ +++ ++||++-
T Consensus 378 A~a~~~--~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~---LPE-KVDIIVS 434 (637)
T 4gqb_A 378 AAKQAD--RRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWV---APE-KADIIVS 434 (637)
T ss_dssp HHHHTT--CEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCC---CSS-CEEEEEC
T ss_pred HHHhcC--CCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceecc---CCc-ccCEEEE
Confidence 344444 333 7999999988655443 3 222 237899999985 444 7899873
No 211
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=28.46 E-value=63 Score=26.18 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=61.1
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccc
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPA 92 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~ 92 (250)
-|.++|+++...+.-+.+. +..++.+|+.++. ++...+|++++......+ .|. ..++.++.++++
T Consensus 58 ~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~---------~~~-~~~l~~~~~~Lk- 122 (261)
T 3ege_A 58 FVYAVEPSIVMRQQAVVHP-QVEWFTGYAENLA---LPDKSVDGVISILAIHHF---------SHL-EKSFQEMQRIIR- 122 (261)
T ss_dssp EEEEECSCHHHHHSSCCCT-TEEEECCCTTSCC---SCTTCBSEEEEESCGGGC---------SSH-HHHHHHHHHHBC-
T ss_pred EEEEEeCCHHHHHHHHhcc-CCEEEECchhhCC---CCCCCEeEEEEcchHhhc---------cCH-HHHHHHHHHHhC-
Confidence 5689999998776544443 4445677877654 333378999987653322 233 367888888887
Q ss_pred cCCCcEEEEccccCCCc------------------chHHHHHHHHHHhCCCeEEE
Q psy3543 93 IPSLQCLLLENVKGFEG------------------SRSRDLITSMLTRAGFRFQE 129 (250)
Q Consensus 93 ~~~P~~i~~ENV~~~~~------------------~~~~~~i~~~L~~~GY~v~~ 129 (250)
. -.+++++-.+.-.. ......+. .|++.||....
T Consensus 123 -g-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~ 174 (261)
T 3ege_A 123 -D-GTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVE 174 (261)
T ss_dssp -S-SCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEE
T ss_pred -C-cEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCcee
Confidence 4 46666664432211 01234566 88999996543
No 212
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=27.53 E-value=36 Score=29.07 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=33.0
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
+++++..+|.++...+.+...++... ...|..++-. ..++|+++.+.|
T Consensus 28 ~~~lvav~d~~~~~~~~~a~~~~~~~-~~~~~~~ll~----~~~~D~V~i~tp 75 (336)
T 2p2s_A 28 GAELAGVFESDSDNRAKFTSLFPSVP-FAASAEQLIT----DASIDLIACAVI 75 (336)
T ss_dssp TCEEEEEECSCTTSCHHHHHHSTTCC-BCSCHHHHHT----CTTCCEEEECSC
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCc-ccCCHHHHhh----CCCCCEEEEeCC
Confidence 48999999999988888888776544 2456555432 225788776665
No 213
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=27.42 E-value=61 Score=25.05 Aligned_cols=48 Identities=8% Similarity=-0.031 Sum_probs=32.9
Q ss_pred EEEEEeCcHHHHHHHHHhCC-----CCCccccCccccccccccCCCCcEEEeCCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP-----RTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~-----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
.|.++|+++.+.+.-+.|+. +..++.+|+.+.... ...+|+++....+
T Consensus 101 ~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D~i~~~~~~ 153 (210)
T 3lbf_A 101 HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA---RAPFDAIIVTAAP 153 (210)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---GCCEEEEEESSBC
T ss_pred EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc---CCCccEEEEccch
Confidence 57899999999888777642 233556777654332 2268999998654
No 214
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=27.38 E-value=2.5e+02 Score=22.76 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=55.8
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCC-CCcEEEeCCCCchhhhcCCCCCCCCchhhHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAM-SPDVILMSPPCQPFTRTGLQKDIADARCTAL 83 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~-~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~ 83 (250)
...|.|+|+++.|.+.-+.|... ..+..+|..+. ++.. .+|+++. +|. -+.++
T Consensus 39 ~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~----l~~~~~~D~Ivi---------aG~-------Gg~~i 98 (225)
T 3kr9_A 39 IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA----FEETDQVSVITI---------AGM-------GGRLI 98 (225)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG----CCGGGCCCEEEE---------EEE-------CHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh----cccCcCCCEEEE---------cCC-------ChHHH
Confidence 34688999999999988887421 12344555321 2211 4787764 221 13455
Q ss_pred HHHHHHcc-ccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE
Q psy3543 84 SYLIETIP-AIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 84 ~~~~~ii~-~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
.+++.-.. .++ | .++++.=+. ....+.+.|.+.||.+....
T Consensus 99 ~~Il~~~~~~L~-~~~~lVlq~~~------~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 99 ARILEEGLGKLA-NVERLILQPNN------REDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp HHHHHHTGGGCT-TCCEEEEEESS------CHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHhC-CCCEEEEECCC------CHHHHHHHHHHCCCEEEEEE
Confidence 66665433 344 4 455553332 36778888999999987654
No 215
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=27.24 E-value=57 Score=26.08 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=33.0
Q ss_pred EEEEEeCcHHHHHHHHHhC----CCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNF----PRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.+.++|+++.+.+.-+.+. ++..+..+|+.++. ++...+|+++....
T Consensus 63 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~ 113 (263)
T 2yqz_A 63 RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP---LPDESVHGVIVVHL 113 (263)
T ss_dssp EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC---SCTTCEEEEEEESC
T ss_pred EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC---CCCCCeeEEEECCc
Confidence 5789999999999888885 33345567776553 33336899998644
No 216
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=27.01 E-value=1.8e+02 Score=24.55 Aligned_cols=94 Identities=10% Similarity=0.059 Sum_probs=50.5
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCc-cccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchh-hHHHHHHHHc
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNL-RGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARC-TALSYLIETI 90 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~-~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~-~l~~~~~~ii 90 (250)
.|.++|+++. .++..+ +++|+.+.... ..+|+++..+++.. .|.. ..++.+. .++..+++.+
T Consensus 94 ~V~gvDis~~--------v~~v~~~i~gD~~~~~~~----~~fD~Vvsn~~~~~---~g~~-~~d~~~~~~l~~~~l~~a 157 (290)
T 2xyq_A 94 LLVDSDLNDF--------VSDADSTLIGDCATVHTA----NKWDLIISDMYDPR---TKHV-TKENDSKEGFFTYLCGFI 157 (290)
T ss_dssp EEEEEESSCC--------BCSSSEEEESCGGGCCCS----SCEEEEEECCCCCC------C-CSCCCCCCTHHHHHHHHH
T ss_pred EEEEEECCCC--------CCCCEEEEECccccCCcc----CcccEEEEcCCccc---cccc-cccccchHHHHHHHHHHH
Confidence 5789999988 245567 78998876432 26899998765322 1211 1222222 2444444433
Q ss_pred -cccCCCc-EEEEccccCCCcchHHHHHHHHHHhCCCeE
Q psy3543 91 -PAIPSLQ-CLLLENVKGFEGSRSRDLITSMLTRAGFRF 127 (250)
Q Consensus 91 -~~~~~P~-~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v 127 (250)
+.++ |- .|++. +.. ......+...|++.||..
T Consensus 158 ~r~Lk-pGG~~v~~-~~~---~~~~~~l~~~l~~~GF~~ 191 (290)
T 2xyq_A 158 KQKLA-LGGSIAVK-ITE---HSWNADLYKLMGHFSWWT 191 (290)
T ss_dssp HHHEE-EEEEEEEE-ECS---SSCCHHHHHHHTTEEEEE
T ss_pred HHhcC-CCcEEEEE-Eec---cCCHHHHHHHHHHcCCcE
Confidence 2344 63 23332 211 123457778888888753
No 217
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=26.89 E-value=2.8e+02 Score=23.18 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=34.4
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
++|.+.. ++++++.+|.++...+.+...++-. ..|+.++-. ..++|+++.+-|
T Consensus 20 ~~l~~~~-~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~~l~----~~~~D~V~i~tp 72 (331)
T 4hkt_A 20 KAVSGNA-DARLVAVADAFPAAAEAIAGAYGCE---VRTIDAIEA----AADIDAVVICTP 72 (331)
T ss_dssp HHHHHCT-TEEEEEEECSSHHHHHHHHHHTTCE---ECCHHHHHH----CTTCCEEEECSC
T ss_pred HHHhhCC-CcEEEEEECCCHHHHHHHHHHhCCC---cCCHHHHhc----CCCCCEEEEeCC
Confidence 4555542 5899999999999888877776422 344444322 226788777666
No 218
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=26.81 E-value=75 Score=25.65 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=43.5
Q ss_pred EEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHcc
Q psy3543 13 VVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIP 91 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~ 91 (250)
.+.++|+++.+.+.-+.+.... ++..|+.++. ++...+|+++.......+. .+ ...++.++.++++
T Consensus 78 ~v~gvD~s~~~l~~a~~~~~~~-~~~~d~~~~~---~~~~~fD~v~~~~~~~~~~--------~~-~~~~l~~~~~~Lk 143 (260)
T 2avn_A 78 EVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLP---FPSGAFEAVLALGDVLSYV--------EN-KDKAFSEIRRVLV 143 (260)
T ss_dssp EEEEEESCHHHHHHHHHHTCSC-EEECCTTSCC---SCTTCEEEEEECSSHHHHC--------SC-HHHHHHHHHHHEE
T ss_pred eEEEEeCCHHHHHHHHhhcCCC-EEECcHHHCC---CCCCCEEEEEEcchhhhcc--------cc-HHHHHHHHHHHcC
Confidence 4788999999999888887633 5677877654 3333689998765544332 12 3346666666654
No 219
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=26.76 E-value=59 Score=25.36 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=32.2
Q ss_pred EEEEEEeCcHHHHHHHHHhCC----------CCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 12 EVVTAIDINTSANSVYKHNFP----------RTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~----------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
..+.++|+++.+.+.-+.++. ...++.+|+..... ....+|++++...
T Consensus 54 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v~~~~~ 111 (217)
T 3jwh_A 54 EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK---RFHGYDAATVIEV 111 (217)
T ss_dssp SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG---GGCSCSEEEEESC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc---cCCCcCEEeeHHH
Confidence 467899999999998888864 23345666643322 1226899997543
No 220
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=26.53 E-value=43 Score=26.44 Aligned_cols=50 Identities=10% Similarity=-0.008 Sum_probs=34.8
Q ss_pred EEEEEEeCcHHHHHHHHHhCCC---CCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 12 EVVTAIDINTSANSVYKHNFPR---TNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~~~---~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
..+.++|+++.+.+.-+.+... ..++.+|+.+..+ ....+|+++...++.
T Consensus 93 ~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v~~~~~~~ 145 (231)
T 1vbf_A 93 DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE---EEKPYDRVVVWATAP 145 (231)
T ss_dssp SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG---GGCCEEEEEESSBBS
T ss_pred CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc---cCCCccEEEECCcHH
Confidence 3678999999999988888653 3345667665222 122689999887764
No 221
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=26.37 E-value=21 Score=30.03 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=30.2
Q ss_pred cEEEEEEeCcHHHHHHHHHhC--------------CCCCccccCccccccccccCCCCcEEEeCCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNF--------------PRTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~--------------~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
.+ |.++|+++..+...+.|. ....++++|..++.. .++. .+|+++.-||=
T Consensus 111 ~~-V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~-~~~~-~fDvV~lDP~y 174 (258)
T 2oyr_A 111 CR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT-DITP-RPQVVYLDPMF 174 (258)
T ss_dssp CC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHST-TCSS-CCSEEEECCCC
T ss_pred CE-EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHH-hCcc-cCCEEEEcCCC
Confidence 44 889999997544443332 112345666655432 2222 68999999984
No 222
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=26.17 E-value=48 Score=28.77 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=34.5
Q ss_pred cEEEEEEeCcHHHHHHHHHhCCC---------CCccccCccccccccccCCCCcEEEeCCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNFPR---------TNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~~---------~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
..-|.++|+++.+.+.-+.|++. ..++.+|+.+... .++...+|+++..++
T Consensus 144 ~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~-~~~~~~fDlIi~d~~ 203 (334)
T 1xj5_A 144 IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK-NAAEGSYDAVIVDSS 203 (334)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH-TSCTTCEEEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHH-hccCCCccEEEECCC
Confidence 45788999999999998888742 2345667655422 122236899998765
No 223
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=26.04 E-value=64 Score=25.31 Aligned_cols=48 Identities=19% Similarity=0.027 Sum_probs=32.3
Q ss_pred EEEEEeCcHHHHHHHHHhCC----------CCCccccCccccccccccCCCCcEEEeCCCC
Q psy3543 13 VVTAIDINTSANSVYKHNFP----------RTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~----------~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPC 63 (250)
.|.++|+++.+.+.-+.|.. ...+...|+.+.... ...+|+++...+|
T Consensus 104 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~i~~~~~~ 161 (226)
T 1i1n_A 104 KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE---EAPYDAIHVGAAA 161 (226)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG---GCCEEEEEECSBB
T ss_pred EEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc---CCCcCEEEECCch
Confidence 67899999998877766542 233455666543221 2268999999988
No 224
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=25.52 E-value=37 Score=28.24 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=33.7
Q ss_pred EEEEEeCcH-------HHHHHHHHhCC-----C-CCccccCccccccccccC--CCCcEEEeCCCCc
Q psy3543 13 VVTAIDINT-------SANSVYKHNFP-----R-TNLRGRNIQSFSIEEINA--MSPDVILMSPPCQ 64 (250)
Q Consensus 13 ~v~a~did~-------~a~~~y~~N~~-----~-~~~~~~dI~~~~~~~~~~--~~~Dll~~gpPCQ 64 (250)
-|.++|+++ .+.+..+.|.. + ..++++|..++.+ .++. ..+|+++..||=.
T Consensus 107 ~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~-~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 107 TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMP-ALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHH-HHHHHHCCCSEEEECCCC-
T ss_pred EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHH-hhhccCCCccEEEECCCCC
Confidence 468999999 88887776631 2 3456777766532 1221 2689999998743
No 225
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=24.98 E-value=65 Score=27.60 Aligned_cols=48 Identities=4% Similarity=0.021 Sum_probs=33.5
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
..++++.+|.++...+.+...|+... ...|.+++-.+ .++|+++.+-|
T Consensus 37 ~~~l~av~d~~~~~a~~~a~~~g~~~-~~~d~~~ll~~----~~iDaV~I~tP 84 (390)
T 4h3v_A 37 HPDLNVLCGRDAEAVRAAAGKLGWST-TETDWRTLLER----DDVQLVDVCTP 84 (390)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTCSE-EESCHHHHTTC----TTCSEEEECSC
T ss_pred CceEEEEEcCCHHHHHHHHHHcCCCc-ccCCHHHHhcC----CCCCEEEEeCC
Confidence 45899999999999998888886543 34566665332 26777665555
No 226
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=24.65 E-value=96 Score=26.36 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=35.8
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.+|.+.. ++++++.+|.++...+.+...++ .. ...|+.++-. ..++|+++.+.|
T Consensus 21 ~~l~~~~-~~~l~av~d~~~~~~~~~a~~~g-~~-~~~~~~~~l~----~~~~D~V~i~tp 74 (344)
T 3euw_A 21 ANIAANP-DLELVVIADPFIEGAQRLAEANG-AE-AVASPDEVFA----RDDIDGIVIGSP 74 (344)
T ss_dssp HHHHHCT-TEEEEEEECSSHHHHHHHHHTTT-CE-EESSHHHHTT----CSCCCEEEECSC
T ss_pred HHHHhCC-CcEEEEEECCCHHHHHHHHHHcC-Cc-eeCCHHHHhc----CCCCCEEEEeCC
Confidence 4555543 48999999999999888888776 32 3455555432 125777766665
No 227
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=24.52 E-value=4.2e+02 Score=24.43 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=32.5
Q ss_pred EEEEEEeCcHHHHHHHHHhC---C-CCCc--cccCccccccccccCCCCcEEEeCCCCc
Q psy3543 12 EVVTAIDINTSANSVYKHNF---P-RTNL--RGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 12 ~~v~a~did~~a~~~y~~N~---~-~~~~--~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
..++++|+|+.+...-+.|. + +..+ .++|.-... ......+|++++-||=.
T Consensus 284 ~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~--~~~~~~fD~Iv~NPPf~ 340 (544)
T 3khk_A 284 ISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDD--QHPDLRADFVMTNPPFN 340 (544)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSC--SCTTCCEEEEEECCCSS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCc--ccccccccEEEECCCcC
Confidence 46899999999988877763 2 1112 445533221 12223789999999943
No 228
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=24.22 E-value=70 Score=27.59 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=30.6
Q ss_pred cEEEEEEeCcHHHHHHHHH----hC-CC-CCccccCccccccccccCCCCcEEEeCCC
Q psy3543 11 LEVVTAIDINTSANSVYKH----NF-PR-TNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~----N~-~~-~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
..-|.++|+++ +.+..+. |. ++ ..++.+|+.++. ++...+|+++..++
T Consensus 89 ~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 89 ARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVE---LPVEKVDIIISEWM 142 (349)
T ss_dssp CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC---CSSSCEEEEEECCC
T ss_pred CCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHcc---CCCCceEEEEEccc
Confidence 55788999996 4443333 32 22 346678888773 33337899998764
No 229
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=23.86 E-value=51 Score=28.44 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=30.1
Q ss_pred cEEEEEEeCcHHHHHHHHHhC------CCCCccccCccccccccccCCCCcEEEeCC
Q psy3543 11 LEVVTAIDINTSANSVYKHNF------PRTNLRGRNIQSFSIEEINAMSPDVILMSP 61 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~------~~~~~~~~dI~~~~~~~~~~~~~Dll~~gp 61 (250)
..-|.++|+++ ..+.-+.|. +...++.+|+.++. ++...+|+++..+
T Consensus 87 ~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~Ivs~~ 139 (340)
T 2fyt_A 87 AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH---LPVEKVDVIISEW 139 (340)
T ss_dssp CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC---CSCSCEEEEEECC
T ss_pred CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc---CCCCcEEEEEEcC
Confidence 45789999996 555444442 23345677887763 3323689999765
No 230
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=23.22 E-value=64 Score=25.33 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=33.5
Q ss_pred EEEEEeCcHHHHHHHHHhC----------CCCCccccCcccccccc-ccCCCCcEEEeCCCCc
Q psy3543 13 VVTAIDINTSANSVYKHNF----------PRTNLRGRNIQSFSIEE-INAMSPDVILMSPPCQ 64 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~----------~~~~~~~~dI~~~~~~~-~~~~~~Dll~~gpPCQ 64 (250)
.|.++|+++.+.+.-+.|. +...++.+|+.+..+.. .....+|+++.+.++.
T Consensus 111 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~ 173 (227)
T 2pbf_A 111 YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASAS 173 (227)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBS
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCCCcCEEEECCchH
Confidence 6789999999887777663 23345567776643100 1112689999888764
No 231
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=23.10 E-value=3.2e+02 Score=22.64 Aligned_cols=56 Identities=11% Similarity=0.139 Sum_probs=35.5
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
.+|.+ -+++++..+|.++...+.+...++... ...|+.++- ...++|+++.+-|=+
T Consensus 18 ~~l~~--~~~~~vav~d~~~~~~~~~~~~~g~~~-~~~~~~~~l----~~~~~D~V~i~tp~~ 73 (332)
T 2glx_A 18 GAIRA--TGGEVVSMMSTSAERGAAYATENGIGK-SVTSVEELV----GDPDVDAVYVSTTNE 73 (332)
T ss_dssp HHHHH--TTCEEEEEECSCHHHHHHHHHHTTCSC-CBSCHHHHH----TCTTCCEEEECSCGG
T ss_pred HHhhc--CCCeEEEEECCCHHHHHHHHHHcCCCc-ccCCHHHHh----cCCCCCEEEEeCChh
Confidence 35555 358999999999988877777665422 233444332 222588887777743
No 232
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=23.00 E-value=1.1e+02 Score=26.01 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=36.0
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCC-CCccccCccccccccccCCCCcEEEeCCC
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPR-TNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~-~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.+|.+..-++++++.+|.++...+.+...++- .. ...|..++-.+ .++|+++.+.|
T Consensus 19 ~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~-~~~~~~~ll~~----~~~D~V~i~tp 75 (344)
T 3mz0_A 19 NRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNAT-VYPNDDSLLAD----ENVDAVLVTSW 75 (344)
T ss_dssp HHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCE-EESSHHHHHHC----TTCCEEEECSC
T ss_pred HHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCe-eeCCHHHHhcC----CCCCEEEECCC
Confidence 34552223589999999999988888887762 22 34555554322 25787776665
No 233
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=22.94 E-value=3.3e+02 Score=22.64 Aligned_cols=56 Identities=11% Similarity=0.209 Sum_probs=35.9
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
++|.+.+ +++++..+|.++...+.+...++... ...|..++- ..++|+++.+.|=+
T Consensus 18 ~~l~~~~-~~~~~~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~l-----~~~~D~V~i~tp~~ 73 (325)
T 2ho3_A 18 EAAHTSG-EYQLVAIYSRKLETAATFASRYQNIQ-LFDQLEVFF-----KSSFDLVYIASPNS 73 (325)
T ss_dssp HHHHHTT-SEEEEEEECSSHHHHHHHGGGSSSCE-EESCHHHHH-----TSSCSEEEECSCGG
T ss_pred HHHHhCC-CeEEEEEEeCCHHHHHHHHHHcCCCe-EeCCHHHHh-----CCCCCEEEEeCChH
Confidence 4555553 58899999999988887777665322 234544432 12688877776633
No 234
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=22.92 E-value=53 Score=28.42 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=37.0
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.+|.+.. ++++++.+|.++...+.+...++.... ..|+.++-.+ .++|+++.+.|
T Consensus 23 ~~l~~~~-~~~l~av~d~~~~~~~~~a~~~~~~~~-~~~~~~ll~~----~~vD~V~i~tp 77 (359)
T 3m2t_A 23 PSLLQMQ-DIRIVAACDSDLERARRVHRFISDIPV-LDNVPAMLNQ----VPLDAVVMAGP 77 (359)
T ss_dssp HHHHTCT-TEEEEEEECSSHHHHGGGGGTSCSCCE-ESSHHHHHHH----SCCSEEEECSC
T ss_pred HHHHhCC-CcEEEEEEcCCHHHHHHHHHhcCCCcc-cCCHHHHhcC----CCCCEEEEcCC
Confidence 3454442 589999999999998888877766543 4566555332 25677777666
No 235
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=22.75 E-value=1.5e+02 Score=20.77 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=33.8
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCcccccc---ccccCCCCcEEEeCCC
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSI---EEINAMSPDVILMSPP 62 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~---~~~~~~~~Dll~~gpP 62 (250)
+.|.+.| ++ |..+|.++...+.....++ ...+.+|..+... ..+. ++|+++.+.|
T Consensus 21 ~~L~~~g--~~-v~~~d~~~~~~~~~~~~~~-~~~~~~d~~~~~~l~~~~~~--~~d~vi~~~~ 78 (140)
T 1lss_A 21 KSLSEKG--HD-IVLIDIDKDICKKASAEID-ALVINGDCTKIKTLEDAGIE--DADMYIAVTG 78 (140)
T ss_dssp HHHHHTT--CE-EEEEESCHHHHHHHHHHCS-SEEEESCTTSHHHHHHTTTT--TCSEEEECCS
T ss_pred HHHHhCC--Ce-EEEEECCHHHHHHHHHhcC-cEEEEcCCCCHHHHHHcCcc--cCCEEEEeeC
Confidence 4567776 55 4568999887777765543 2234566543321 1233 6899999876
No 236
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=22.47 E-value=87 Score=27.74 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=30.8
Q ss_pred CcEEEEEEeCcH---HHHHHHHHhCCC--CCccccCccccccccccCCCCcEEEe
Q psy3543 10 SLEVVTAIDINT---SANSVYKHNFPR--TNLRGRNIQSFSIEEINAMSPDVILM 59 (250)
Q Consensus 10 ~~~~v~a~did~---~a~~~y~~N~~~--~~~~~~dI~~~~~~~~~~~~~Dll~~ 59 (250)
|.+-|+|+|.++ .|.+..+.|.-. ..++++|++++. +++ .+|+++.
T Consensus 105 GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~---lpe-~~Dvivs 155 (376)
T 4hc4_A 105 GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVE---LPE-QVDAIVS 155 (376)
T ss_dssp TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC---CSS-CEEEEEC
T ss_pred CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeec---CCc-cccEEEe
Confidence 367889999985 445555566422 336788888874 343 7899985
No 237
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=22.36 E-value=2.5e+02 Score=21.09 Aligned_cols=124 Identities=12% Similarity=-0.037 Sum_probs=67.6
Q ss_pred EEEEEeCcHHHHHHHHHhCC----CCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFP----RTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIE 88 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~----~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ 88 (250)
-+.++|+++.+.+.-+.+.. ...++..|+.++. ++...+|++++... . .. .+....++.++.+
T Consensus 53 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~--------~-~~-~~~~~~~l~~~~~ 119 (202)
T 2kw5_A 53 EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD---IVADAWEGIVSIFC--------H-LP-SSLRQQLYPKVYQ 119 (202)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS---CCTTTCSEEEEECC--------C-CC-HHHHHHHHHHHHT
T ss_pred eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC---CCcCCccEEEEEhh--------c-CC-HHHHHHHHHHHHH
Confidence 57889999998777666642 3345567776653 33336899997431 0 00 0112233344433
Q ss_pred HccccCCC--cEEEEccccCCC-----------cchHHHHHHHHHHhCCCeEEEEE--EccCCCCccccCceEEEEEEeC
Q psy3543 89 TIPAIPSL--QCLLLENVKGFE-----------GSRSRDLITSMLTRAGFRFQEFL--LSPTQFGVPNSRTRYYLIAKRS 153 (250)
Q Consensus 89 ii~~~~~P--~~i~~ENV~~~~-----------~~~~~~~i~~~L~~~GY~v~~~i--l~a~~~GvPq~R~R~~lva~~~ 153 (250)
.++ | .+++....+.-. ..-..+.+.+.|+ ||.+.... -....-|.++.-.+.++-+..+
T Consensus 120 ---~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~~~~~~g~~~~~~~~~i~~~~~ 193 (202)
T 2kw5_A 120 ---GLK-PGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLERNLDEGAYHQGKAALIQLLGQ 193 (202)
T ss_dssp ---TCC-SSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEEEECSCSSSSCCEEEEEEEEEC
T ss_pred ---hcC-CCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEEeecCCCCCcccHHHHHHHHHH
Confidence 344 5 333332222111 0123466777776 99886543 2234457888777888777655
Q ss_pred CC
Q psy3543 154 PA 155 (250)
Q Consensus 154 ~~ 155 (250)
..
T Consensus 194 ~~ 195 (202)
T 2kw5_A 194 KL 195 (202)
T ss_dssp CC
T ss_pred hh
Confidence 43
No 238
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=22.28 E-value=47 Score=28.58 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=32.2
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
++++++.+|.++...+.+...|+... ...|.+++-.+ .++|+++.+.|
T Consensus 56 ~~~lvav~d~~~~~a~~~a~~~g~~~-~y~d~~ell~~----~~iDaV~IatP 103 (393)
T 4fb5_A 56 RPRLVHLAEANAGLAEARAGEFGFEK-ATADWRALIAD----PEVDVVSVTTP 103 (393)
T ss_dssp CCEEEEEECC--TTHHHHHHHHTCSE-EESCHHHHHHC----TTCCEEEECSC
T ss_pred CcEEEEEECCCHHHHHHHHHHhCCCe-ecCCHHHHhcC----CCCcEEEECCC
Confidence 47899999999998888888876543 34566665432 26788766665
No 239
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.27 E-value=2.2e+02 Score=20.28 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=43.4
Q ss_pred ccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHHHHHccc-cCCCcEEEEccccCCCcchHHHHH
Q psy3543 38 GRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPA-IPSLQCLLLENVKGFEGSRSRDLI 116 (250)
Q Consensus 38 ~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~~~ii~~-~~~P~~i~~ENV~~~~~~~~~~~i 116 (250)
..|+.+.+..++. +.|+++.|.|.-... ...+ ..+..+++.+.. ++.-++.++- .-|.......+.+
T Consensus 32 ~~~~~~~~~~~l~--~~d~iiig~pty~~g-------~~p~--~~~~~fl~~l~~~l~~k~~~~f~-t~g~~~~~a~~~l 99 (138)
T 5nul_A 32 TINVSDVNIDELL--NEDILILGCSAMTDE-------VLEE--SEFEPFIEEISTKISGKKVALFG-SYGWGDGKWMRDF 99 (138)
T ss_dssp EEEGGGCCHHHHT--TCSEEEEEECCBTTT-------BCCT--TTHHHHHHHHGGGCTTCEEEEEE-EESSSCSHHHHHH
T ss_pred EEEhhhCCHHHHh--hCCEEEEEcCccCCC-------CCCh--HHHHHHHHHHHhhcCCCEEEEEE-ecCCCCChHHHHH
Confidence 3456666666776 689999998853221 1111 022334433332 2312333333 3343335678899
Q ss_pred HHHHHhCCCeEE
Q psy3543 117 TSMLTRAGFRFQ 128 (250)
Q Consensus 117 ~~~L~~~GY~v~ 128 (250)
.+.|+++|+.+-
T Consensus 100 ~~~l~~~G~~~v 111 (138)
T 5nul_A 100 EERMNGYGCVVV 111 (138)
T ss_dssp HHHHHHTTCEEC
T ss_pred HHHHHHCCCEEE
Confidence 999999998764
No 240
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=21.83 E-value=2.9e+02 Score=21.57 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=60.1
Q ss_pred HhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCc-hhhH
Q psy3543 4 LSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADA-RCTA 82 (250)
Q Consensus 4 L~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~-r~~l 82 (250)
|.+.| .+ |.++|+++.+.+.-+.+ ..++..|+.+... .++...+|+++...--.. ..++ ...+
T Consensus 59 l~~~~--~~-v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~-~~~~~~fD~i~~~~~l~~---------~~~~~~~~~ 122 (240)
T 3dli_A 59 CKEEG--IE-SIGVDINEDMIKFCEGK---FNVVKSDAIEYLK-SLPDKYLDGVMISHFVEH---------LDPERLFEL 122 (240)
T ss_dssp HHHHT--CC-EEEECSCHHHHHHHHTT---SEEECSCHHHHHH-TSCTTCBSEEEEESCGGG---------SCGGGHHHH
T ss_pred HHhCC--Cc-EEEEECCHHHHHHHHhh---cceeeccHHHHhh-hcCCCCeeEEEECCchhh---------CCcHHHHHH
Confidence 44444 44 58999999999888777 3445677765421 233347899997532111 1222 2345
Q ss_pred HHHHHHHccccCCCcEEEEc-cccCCC------------cchHHHHHHHHHHhCCCeEEEE
Q psy3543 83 LSYLIETIPAIPSLQCLLLE-NVKGFE------------GSRSRDLITSMLTRAGFRFQEF 130 (250)
Q Consensus 83 ~~~~~~ii~~~~~P~~i~~E-NV~~~~------------~~~~~~~i~~~L~~~GY~v~~~ 130 (250)
+.++.++++.-- .+++.. |...+. ..-....+.+.|++.||.+...
T Consensus 123 l~~~~~~LkpgG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 123 LSLCYSKMKYSS--YIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp HHHHHHHBCTTC--CEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHcCCCc--EEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 566666654211 333322 211110 1113467888899999986543
No 241
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=21.33 E-value=39 Score=27.08 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=56.9
Q ss_pred EEEEEeCcHHHHHHHHHhCCC------CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHHHH
Q psy3543 13 VVTAIDINTSANSVYKHNFPR------TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYL 86 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~~~------~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~~~ 86 (250)
.|.++|+++.+.+.-+.+... ..++.+|+.++. ++...+|++++...... . +. ..++.++
T Consensus 71 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~---------~-~~-~~~l~~~ 136 (257)
T 3f4k_A 71 QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP---FQNEELDLIWSEGAIYN---------I-GF-ERGMNEW 136 (257)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS---SCTTCEEEEEEESCSCC---------C-CH-HHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC---CCCCCEEEEEecChHhh---------c-CH-HHHHHHH
Confidence 778999999988877776422 335567776654 22336899988744222 1 22 2344444
Q ss_pred HHHccccCCC--cEEEEccc-cCCCc--------------chHHHHHHHHHHhCCCeEEE
Q psy3543 87 IETIPAIPSL--QCLLLENV-KGFEG--------------SRSRDLITSMLTRAGFRFQE 129 (250)
Q Consensus 87 ~~ii~~~~~P--~~i~~ENV-~~~~~--------------~~~~~~i~~~L~~~GY~v~~ 129 (250)
.+++ + | .+++.+-. ..-.. ......+.+.|++.||.+..
T Consensus 137 ~~~L---~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~ 192 (257)
T 3f4k_A 137 SKYL---K-KGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTA 192 (257)
T ss_dssp HTTE---E-EEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEE
T ss_pred HHHc---C-CCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEE
Confidence 4444 4 5 34444321 00000 11346778889999998765
No 242
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=21.20 E-value=57 Score=24.70 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=31.8
Q ss_pred EEEEEeCcHHHHHHHHHhC-----CCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 13 VVTAIDINTSANSVYKHNF-----PRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~-----~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
.+.++|+++.+.+..+.+. ++..++..|+.++.. ...+|+++....
T Consensus 56 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~ 106 (199)
T 2xvm_A 56 DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF----DRQYDFILSTVV 106 (199)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC----CCCEEEEEEESC
T ss_pred eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC----CCCceEEEEcch
Confidence 5789999999888776653 233455677776543 226899997764
No 243
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=21.11 E-value=71 Score=29.68 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=33.6
Q ss_pred ChHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCC-----CccccCccccccccccCCCCcEEEeC
Q psy3543 1 AERLSNHAFSLEVVTAIDINTSANSVYKHNFPRT-----NLRGRNIQSFSIEEINAMSPDVILMS 60 (250)
Q Consensus 1 ~egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~-----~~~~~dI~~~~~~~~~~~~~Dll~~g 60 (250)
+|.|.+.| . .|.++|+.+.+.++-+...... .+.++++.++... .....+|++++.
T Consensus 81 ~~~la~~g--a-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~v~~~ 141 (569)
T 4azs_A 81 SLSLASKG--A-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA-LEEGEFDLAIGL 141 (569)
T ss_dssp HHHHHHTT--C-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH-CCTTSCSEEEEE
T ss_pred HHHHHhCC--C-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh-ccCCCccEEEEC
Confidence 36677777 4 4789999999888766543222 2234455444221 122368998864
No 244
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=21.05 E-value=81 Score=24.86 Aligned_cols=49 Identities=8% Similarity=-0.027 Sum_probs=32.4
Q ss_pred EEEEEeCcHHHHHHHHHhC----------CCCCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 13 VVTAIDINTSANSVYKHNF----------PRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 13 ~v~a~did~~a~~~y~~N~----------~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
.|.++|+++.+.+.-+.|. +...+..+|+.+..+. ...+|+++.+.++.
T Consensus 116 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~I~~~~~~~ 174 (227)
T 1r18_A 116 RIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP---NAPYNAIHVGAAAP 174 (227)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG---GCSEEEEEECSCBS
T ss_pred EEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc---CCCccEEEECCchH
Confidence 6789999999877766653 2333456676652111 12689999988864
No 245
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=21.05 E-value=66 Score=28.28 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=35.5
Q ss_pred CcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCc
Q psy3543 10 SLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQ 64 (250)
Q Consensus 10 ~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ 64 (250)
++++++.+|.++...+.+...|+... ...|.+++-.+ .++|+++.+.|=.
T Consensus 58 ~~elvav~d~~~~~a~~~a~~~~~~~-~y~d~~~ll~~----~~vD~V~I~tp~~ 107 (412)
T 4gqa_A 58 RPHLYALADQDQAMAERHAAKLGAEK-AYGDWRELVND----PQVDVVDITSPNH 107 (412)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTCSE-EESSHHHHHHC----TTCCEEEECSCGG
T ss_pred CeEEEEEEcCCHHHHHHHHHHcCCCe-EECCHHHHhcC----CCCCEEEECCCcH
Confidence 47899999999999998888887654 34576665432 2678876665533
No 246
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=20.47 E-value=92 Score=26.66 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=36.1
Q ss_pred hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCC
Q psy3543 2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPP 62 (250)
Q Consensus 2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpP 62 (250)
++|.+..-++++++.+|.++...+.+...++- . ...|+.++-.+ .++|+++.+-|
T Consensus 30 ~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~-~-~~~~~~~ll~~----~~~D~V~i~tp 84 (354)
T 3q2i_A 30 GALEKHADRAELIDVCDIDPAALKAAVERTGA-R-GHASLTDMLAQ----TDADIVILTTP 84 (354)
T ss_dssp HHHHHTTTTEEEEEEECSSHHHHHHHHHHHCC-E-EESCHHHHHHH----CCCSEEEECSC
T ss_pred HHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCC-c-eeCCHHHHhcC----CCCCEEEECCC
Confidence 45666633689999999999988877776642 2 24455554321 26787777666
No 247
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=20.36 E-value=3.6e+02 Score=22.12 Aligned_cols=95 Identities=11% Similarity=0.057 Sum_probs=54.9
Q ss_pred cEEEEEEeCcHHHHHHHHHhCC-----C-CCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhHHH
Q psy3543 11 LEVVTAIDINTSANSVYKHNFP-----R-TNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALS 84 (250)
Q Consensus 11 ~~~v~a~did~~a~~~y~~N~~-----~-~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l~~ 84 (250)
..-|.|+|+++.|.+.-+.|.. + ..+..+|..+.... ...+|+++. +|-. +.++.
T Consensus 45 ~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~---~~~~D~Ivi---------agmG-------g~lI~ 105 (244)
T 3gnl_A 45 ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK---KDAIDTIVI---------AGMG-------GTLIR 105 (244)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---GGCCCEEEE---------EEEC-------HHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc---cccccEEEE---------eCCc-------hHHHH
Confidence 4468999999999999888842 1 22445555443221 114788774 2321 34566
Q ss_pred HHHHHcc-ccCCC-cEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEE
Q psy3543 85 YLIETIP-AIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131 (250)
Q Consensus 85 ~~~~ii~-~~~~P-~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~i 131 (250)
+++.-.. .++ | .++++-=. .....+.+.|.+.||.+....
T Consensus 106 ~IL~~~~~~L~-~~~~lIlq~~------~~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 106 TILEEGAAKLA-GVTKLILQPN------IAAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp HHHHHTGGGGT-TCCEEEEEES------SCHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHhC-CCCEEEEEcC------CChHHHHHHHHHCCCEEEEEE
Confidence 6555332 333 3 33333321 136678888999999985543
No 248
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=20.32 E-value=4.4e+02 Score=23.16 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=57.3
Q ss_pred HHhhcCCCcEEEEEEeCcHHHHHHHHH-----hCCCCCcccc---CccccccccccCCCCcEEEeCCCCchhh-------
Q psy3543 3 RLSNHAFSLEVVTAIDINTSANSVYKH-----NFPRTNLRGR---NIQSFSIEEINAMSPDVILMSPPCQPFT------- 67 (250)
Q Consensus 3 gL~~~g~~~~~v~a~did~~a~~~y~~-----N~~~~~~~~~---dI~~~~~~~~~~~~~Dll~~gpPCQ~fS------- 67 (250)
+|.... ++++++.+|.++...+.+.. ++|....+.. |+.++-. ..++|+++.+.|=.-+-
T Consensus 38 ~l~~~~-~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~----~~~vD~V~i~tp~~~h~~~~~~al 112 (444)
T 2ixa_A 38 NMARRD-DVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLK----DKNIDAVFVSSPWEWHHEHGVAAM 112 (444)
T ss_dssp HHHTCT-TEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTT----CTTCCEEEECCCGGGHHHHHHHHH
T ss_pred HHHhCC-CcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhc----CCCCCEEEEcCCcHHHHHHHHHHH
Confidence 454432 58999999999987766554 2333332221 4444322 22688887777633322
Q ss_pred hcCCCCCCCCchh---hHHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHH
Q psy3543 68 RTGLQKDIADARC---TALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLT 121 (250)
Q Consensus 68 ~ag~~~~~~d~r~---~l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~ 121 (250)
.+|+.==.+-|-. .-..++++..++.. -.+.+.+|..- ...+..+.+.++
T Consensus 113 ~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g-~~~~v~~~~r~---~p~~~~~~~~i~ 165 (444)
T 2ixa_A 113 KAGKIVGMEVSGAITLEECWDYVKVSEQTG-VPLMALENVCY---RRDVMAILNMVR 165 (444)
T ss_dssp HTTCEEEECCCCCSSHHHHHHHHHHHHHHC-CCEEECCGGGG---CHHHHHHHHHHH
T ss_pred HCCCeEEEeCCCcCCHHHHHHHHHHHHHhC-CeEEEEecccc---CHHHHHHHHHHH
Confidence 2343100111111 22344555555555 66777777642 244566666665
No 249
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=20.23 E-value=1.1e+02 Score=21.88 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=35.7
Q ss_pred ChHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCcccccc-ccccCCCCcEEEeCCC
Q psy3543 1 AERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSI-EEINAMSPDVILMSPP 62 (250)
Q Consensus 1 ~egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~-~~~~~~~~Dll~~gpP 62 (250)
|+.|.+.| ++ |.++|.++...+..... ...++.+|+.+... ....-.++|+++.+.|
T Consensus 22 a~~L~~~g--~~-V~~id~~~~~~~~~~~~--~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 22 VRELTAAG--KK-VLAVDKSKEKIELLEDE--GFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp HHHHHHTT--CC-EEEEESCHHHHHHHHHT--TCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred HHHHHHCC--Ce-EEEEECCHHHHHHHHHC--CCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 35677777 44 45689999888777654 23345677765432 1111126899998777
No 250
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=20.02 E-value=1.2e+02 Score=21.95 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=36.2
Q ss_pred ChHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCcccccc---ccccCCCCcEEEeCCC
Q psy3543 1 AERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSI---EEINAMSPDVILMSPP 62 (250)
Q Consensus 1 ~egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~---~~~~~~~~Dll~~gpP 62 (250)
|+.|.+.| + -|.++|.|+...+..+.. +..++.+|..+... ..+. ++|+++...|
T Consensus 23 a~~L~~~g--~-~v~vid~~~~~~~~~~~~--g~~~i~gd~~~~~~l~~a~i~--~ad~vi~~~~ 80 (140)
T 3fwz_A 23 GEKLLASD--I-PLVVIETSRTRVDELRER--GVRAVLGNAANEEIMQLAHLE--CAKWLILTIP 80 (140)
T ss_dssp HHHHHHTT--C-CEEEEESCHHHHHHHHHT--TCEEEESCTTSHHHHHHTTGG--GCSEEEECCS
T ss_pred HHHHHHCC--C-CEEEEECCHHHHHHHHHc--CCCEEECCCCCHHHHHhcCcc--cCCEEEEECC
Confidence 35677777 4 356799999988877752 34456777765432 1233 6889888776
Done!