RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3543
(250 letters)
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 343
Score = 88.6 bits (218), Expect = 3e-21
Identities = 101/245 (41%), Positives = 144/245 (58%), Gaps = 8/245 (3%)
Query: 4 LSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63
L +VV AID+NT AN VYK+NFP T L + I+ ++EE + +S D+ILMSPPC
Sbjct: 19 LRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPC 78
Query: 64 QPFTRTGLQKDIADARCTALSYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTR 122
QPFTR G Q D+ D+R + ++++ +P + L + +LLENVKGFE S +RDL+ +
Sbjct: 79 QPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIEN 138
Query: 123 AGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANT 182
GF++QEFLLSPT G+PNSR RY+LIAK F+ +++ E PK++ +
Sbjct: 139 CGFQYQEFLLSPTSLGIPNSRLRYFLIAKL------QSEPLPFQAPGQVLMEFPKIEIHR 192
Query: 183 CNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTH 242
N S +++ + D D +YL+ K LLR + DIV + CFTK Y
Sbjct: 193 KNQQDSDLSVKMLKDFLEDDTD-VNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGS 251
Query: 243 YAEGK 247
Y EG
Sbjct: 252 YIEGT 256
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
haemolyticus [TaxId: 726]}
Length = 327
Score = 53.8 bits (128), Expect = 4e-09
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 6/141 (4%)
Query: 12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71
E V + + + A VY+ NF +I + + I D++ PCQ F+ +G
Sbjct: 34 ECVYSNEWDKYAQEVYEMNFGEKPE--GDITQVNEKTI--PDHDILCAGFPCQAFSISGK 89
Query: 72 QKDIADARCTALSYLIETIPAI--PSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQE 129
QK D+R T + + + ++N + + +++ + + + F
Sbjct: 90 QKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA 149
Query: 130 FLLSPTQFGVPNSRTRYYLIA 150
+L+ +G+P R R Y+I
Sbjct: 150 KVLNALDYGIPQKRERIYMIC 170
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius
[TaxId: 197575]}
Length = 324
Score = 51.9 bits (123), Expect = 2e-08
Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 9/175 (5%)
Query: 11 LEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTG 70
++ A + + S Y+ N ++G +I S +E D I+ PPCQ ++ G
Sbjct: 22 FRIICANEYDKSIWKTYESNHSAKLIKG-DISKISSDEF--PKCDGIIGGPPCQSWSEGG 78
Query: 71 LQKDIADARCTALSYLIETI----PAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFR 126
+ I D R I + P + + + + + AG+
Sbjct: 79 SLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFD--NAGYD 136
Query: 127 FQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKAN 181
LL+ +GV R R + I R + + LK N
Sbjct: 137 VHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKPTFKDVIWDLKDN 191
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 30.9 bits (69), Expect = 0.12
Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 9/142 (6%)
Query: 15 TAIDINTSANSVYKHNFPRTNLRGRNIQ--------SFSIEEINAMSPDVILMSPPCQPF 66
T +D + A K N L I+ EE + D+IL PP
Sbjct: 158 THVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGR 217
Query: 67 TRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFR 126
G + D + + I + +L +L +L+ + AG
Sbjct: 218 GTHGEVWQLFDHL-PLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGV 276
Query: 127 FQEFLLSPTQFGVPNSRTRYYL 148
L + G+ L
Sbjct: 277 VASGELVIREAGLDGKTPGRVL 298
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 29.6 bits (65), Expect = 0.33
Identities = 5/42 (11%), Positives = 10/42 (23%)
Query: 112 SRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+ I L + + + V R + K
Sbjct: 204 KEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245
>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa
(Medicago sativa) [TaxId: 3879]}
Length = 101
Score = 27.9 bits (62), Expect = 0.44
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 167 TSSELMTELP--KLKANTCNPLLSRMTLHGILDSTHPSGDLYR-----RYLVSDKD 215
+ S L++ L K L+ + +G + + Y LV D
Sbjct: 46 SLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSD 101
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein
MecI {Staphylococcus aureus [TaxId: 1280]}
Length = 120
Score = 28.0 bits (62), Expect = 0.47
Identities = 7/64 (10%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 167 TSSELMTELPK---LKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVF 223
+++ ++ E+ T L++R+ G + +++ Y + ++ ++
Sbjct: 23 SANNIIEEIQMQKDWSPKTIRTLITRLYKKGFI-DRKKDNKIFQYYSLVEESDIKYKTSK 81
Query: 224 DIVN 227
+ +N
Sbjct: 82 NFIN 85
>d1esza_ c.92.2.1 (A:) Periplasmic ferric siderophore binding
protein FhuD {Escherichia coli [TaxId: 562]}
Length = 260
Score = 27.5 bits (60), Expect = 1.4
Identities = 6/45 (13%), Positives = 11/45 (24%)
Query: 30 NFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKD 74
N + + SI+ + A +L L
Sbjct: 176 NAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMAT 220
Score = 27.1 bits (59), Expect = 2.1
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 43 SFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAI 93
++E + M P ++ S P + IA R S + +
Sbjct: 54 EPNLELLTEMKPSFMVWSAGYGPSPE--MLARIAPGRGFNFSDGKQPLAMA 102
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 251
Score = 26.6 bits (57), Expect = 2.5
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 119 MLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRS 153
+L F + + + PN + + +S
Sbjct: 217 LLAEKYFEKVKIYGNLKRELSPNDMRYWIVGIAKS 251
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId:
562]}
Length = 195
Score = 26.0 bits (57), Expect = 3.3
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 185 PLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDI 225
P L+R LH + +T D YR+Y+ D L RRF +
Sbjct: 145 PALARGELHCVGATTL---DEYRQYIEKDAALERRFQKVFV 182
>d2ajta2 c.85.1.2 (A:1-328) L-arabinose isomerase AraA {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 26.3 bits (58), Expect = 3.7
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 70 GLQKDIADARCTALSYLIETIPAIPSLQCLLLE--NVKGFEGSRSRDLITSMLTRAG 124
G+++ + A + E + + L L ++ +G+ + D T+ L R
Sbjct: 262 GMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIM 318
>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 78
Score = 24.7 bits (54), Expect = 4.1
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINA 51
F+ E+ AI +Y + + ++ IEEI+
Sbjct: 17 GDKLQPFTKELN-AIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISP 64
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 481
Score = 25.1 bits (54), Expect = 9.3
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 159 SEASFCFETSSELMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDL--YRRYLVSDK-- 214
SE + FE + + +P +KA T L+ R+T H D L YR + +
Sbjct: 17 SEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELL 76
Query: 215 -DLLRRFHVFD 224
++ RF + +
Sbjct: 77 SLIIERFEIPE 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.133 0.389
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 883,280
Number of extensions: 38188
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 14
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)