Query psy3545
Match_columns 130
No_of_seqs 107 out of 1032
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:23:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1638|consensus 100.0 8.2E-39 1.8E-43 241.3 12.2 112 14-129 146-257 (257)
2 PF02544 Steroid_dh: 3-oxo-5-a 100.0 2.2E-37 4.8E-42 222.2 13.2 111 15-129 40-150 (150)
3 PLN03164 3-oxo-5-alpha-steroid 100.0 5.6E-36 1.2E-40 235.4 13.4 114 15-129 209-323 (323)
4 PLN02392 probable steroid redu 100.0 5.3E-36 1.1E-40 230.8 12.8 110 16-129 151-260 (260)
5 PLN02560 enoyl-CoA reductase 100.0 6.4E-32 1.4E-36 213.2 13.0 110 17-128 194-308 (308)
6 KOG1640|consensus 100.0 3.1E-30 6.6E-35 199.0 10.2 114 14-129 191-304 (304)
7 KOG1639|consensus 99.9 1.9E-26 4.2E-31 175.1 6.0 107 17-128 188-297 (297)
8 COG3752 Steroid 5-alpha reduct 99.9 6.3E-22 1.4E-26 150.6 7.4 120 6-128 139-266 (272)
9 PF06966 DUF1295: Protein of u 99.8 2.1E-20 4.6E-25 142.8 11.0 69 14-84 118-186 (235)
10 PF04191 PEMT: Phospholipid me 99.7 9.6E-16 2.1E-20 103.1 11.3 102 16-117 2-106 (106)
11 KOG4650|consensus 99.7 7.9E-16 1.7E-20 117.6 10.4 121 6-129 167-297 (311)
12 COG2020 STE14 Putative protein 99.7 1.3E-15 2.9E-20 112.8 11.4 120 10-129 63-186 (187)
13 PF04140 ICMT: Isoprenylcystei 99.5 7.9E-13 1.7E-17 88.2 10.0 90 21-110 2-93 (94)
14 PF01222 ERG4_ERG24: Ergostero 99.4 1.3E-12 2.7E-17 107.8 9.9 112 18-129 305-432 (432)
15 KOG1435|consensus 99.1 9.8E-11 2.1E-15 95.4 6.2 117 13-129 296-428 (428)
16 KOG2628|consensus 99.1 1.2E-10 2.6E-15 86.2 5.9 80 48-128 117-200 (201)
17 COG1755 Uncharacterized protei 99.1 1.3E-09 2.7E-14 78.9 9.7 102 12-113 66-169 (172)
18 PLN02797 phosphatidyl-N-dimeth 96.8 0.01 2.2E-07 42.8 7.7 75 18-97 67-144 (164)
19 PF07298 NnrU: NnrU protein; 94.3 0.48 1E-05 35.3 8.6 65 58-126 96-163 (191)
20 KOG4142|consensus 91.7 0.98 2.1E-05 33.3 6.7 71 11-83 93-167 (208)
21 COG4094 Predicted membrane pro 86.8 1.4 3.1E-05 33.3 4.5 73 55-128 100-174 (219)
22 PF13789 DUF4181: Domain of un 80.5 5.3 0.00011 26.9 5.0 57 51-107 14-81 (110)
23 PF15584 Imm44: Immunity prote 73.7 1.4 3.1E-05 29.2 0.6 22 47-68 19-49 (94)
24 PF05653 Mg_trans_NIPA: Magnes 55.5 1E+02 0.0022 24.4 8.2 55 18-82 6-62 (300)
25 PF01307 Plant_vir_prot: Plant 47.6 52 0.0011 22.1 4.5 14 47-60 36-49 (104)
26 PF06127 DUF962: Protein of un 46.7 29 0.00062 22.7 3.1 27 18-44 45-71 (95)
27 PRK02251 putative septation in 37.2 52 0.0011 21.6 3.1 26 8-33 26-51 (87)
28 PF13903 Claudin_2: PMP-22/EMP 36.8 93 0.002 21.3 4.7 48 19-66 2-53 (172)
29 PRK00159 putative septation in 30.4 73 0.0016 20.9 3.0 26 8-33 25-50 (87)
30 KOG4050|consensus 28.4 2.5E+02 0.0053 20.8 7.8 20 62-81 106-125 (188)
31 PF06781 UPF0233: Uncharacteri 26.9 98 0.0021 20.2 3.1 23 10-32 27-49 (87)
32 PF12273 RCR: Chitin synthesis 26.5 77 0.0017 21.7 2.8 28 15-42 2-29 (130)
33 COG3105 Uncharacterized protei 25.1 2.4E+02 0.0052 20.0 5.0 33 66-104 2-34 (138)
34 TIGR00353 nrfE c-type cytochro 23.9 21 0.00045 31.1 -0.6 51 19-70 434-486 (576)
35 PF10319 7TM_GPCR_Srj: Serpent 23.1 1.8E+02 0.004 23.4 4.7 20 101-120 155-175 (310)
36 PHA00728 hypothetical protein 22.1 18 0.00039 25.3 -1.1 13 58-70 77-89 (151)
37 PF15050 SCIMP: SCIMP protein 21.6 2E+02 0.0042 20.2 3.9 27 13-40 7-37 (133)
38 COG4539 Predicted membrane pro 21.3 13 0.00028 27.2 -2.0 17 19-35 103-119 (180)
39 COG5431 Uncharacterized metal- 21.0 51 0.0011 22.5 1.0 19 49-71 43-61 (117)
40 PF01102 Glycophorin_A: Glycop 20.0 3E+02 0.0066 19.0 4.7 27 3-30 56-82 (122)
No 1
>KOG1638|consensus
Probab=100.00 E-value=8.2e-39 Score=241.28 Aligned_cols=112 Identities=25% Similarity=0.457 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCcccccccCccceeecchhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy3545 14 VHNHNLKKILMCSSSNIKYFCNVSVYEQSFLNIVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYW 93 (130)
Q Consensus 14 ~~~~~~g~~lf~ig~~~~~~~~~~L~~~k~~~~~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~~~~~~~~~ 93 (130)
.+...+|+.+|++|+++|..+|.+|+++|.+ ++++|+||+||+|+||+||||||||+.|+|+++++++.+..+ ++++
T Consensus 146 ~~r~liG~~lfv~Gm~iN~~sD~iL~~LRk~--~~~~YkIP~GglFeyVsCPNYfgEiieW~Gyal~~ws~p~~a-Fa~f 222 (257)
T KOG1638|consen 146 DIRFLIGVVLFVTGMLINIYSDNILRTLRKP--GGKGYKIPRGGLFEYVSCPNYFGEIIEWIGYALASWSLPALA-FAFF 222 (257)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHhhcC--CCCceecCCCceEEEeecchHHHHHHHHHHHHHHhhhHHHHH-HHHH
Confidence 4445799999999999999999999995533 478999999999999999999999999999999999866555 4689
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhccCCCcceeecccc
Q psy3545 94 VISNQFETSLLNHWWYQSKFTRQYPASRKAFIPYLL 129 (130)
Q Consensus 94 v~~~~~~~a~~~~~~y~~~F~~~Y~~~r~~lIPfI~ 129 (130)
+++|+..||..+|+||+++|+ ||||+||++||||+
T Consensus 223 t~~~l~pRA~ahH~WY~~kFe-~YPk~RkAlIPfvf 257 (257)
T KOG1638|consen 223 TICNLGPRAYAHHKWYLKKFE-DYPKNRKALIPFVF 257 (257)
T ss_pred HHHHhhHHHHHHHHHHHHhhc-cCCccceeeccccC
Confidence 999999999999999999996 99999999999996
No 2
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=100.00 E-value=2.2e-37 Score=222.23 Aligned_cols=111 Identities=27% Similarity=0.488 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCcccccccCccceeecchhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy3545 15 HNHNLKKILMCSSSNIKYFCNVSVYEQSFLNIVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYWV 94 (130)
Q Consensus 15 ~~~~~g~~lf~ig~~~~~~~~~~L~~~k~~~~~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~~~~~~~~~v 94 (130)
+..++|+++|++|+..|+.+|.+|+++|++ ++++|++|+||+|++|+||||++|+++|+|+++++++.. ...+++++
T Consensus 40 ~~~~~g~~lf~~g~~~n~~~h~~L~~lr~~--~~~~y~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~~~~-~~~f~~~~ 116 (150)
T PF02544_consen 40 PRFIIGLALFLIGSIGNFYSHLILANLRKP--GSKKYKIPKGGLFEYVSCPHYFFEILIWIGFALLTGSWP-SYAFALFV 116 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cCCceeCCCCCCcceeeehhhHHHHHHHHHHHHHHhhhh-hHHHHHHH
Confidence 446899999999999999999999996654 478999999999999999999999999999999998644 44456799
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccCCCcceeecccc
Q psy3545 95 ISNQFETSLLNHWWYQSKFTRQYPASRKAFIPYLL 129 (130)
Q Consensus 95 ~~~~~~~a~~~~~~y~~~F~~~Y~~~r~~lIPfI~ 129 (130)
+++|+.||.++|+||+++|+ |||++|+++|||||
T Consensus 117 ~~~l~~~A~~~h~wY~~~F~-~yp~~R~~lIPfi~ 150 (150)
T PF02544_consen 117 VVNLSPRAVQTHRWYKKKFK-EYPKNRKALIPFIF 150 (150)
T ss_pred HHHHHHHHHHHHHHHHHHCc-cccCCCeEecCccC
Confidence 99999999999999999996 99999999999996
No 3
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=100.00 E-value=5.6e-36 Score=235.41 Aligned_cols=114 Identities=25% Similarity=0.404 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCcccccccCccceeecchhhHHHHHHHHHHHHhhh-hhHHHHHHHH
Q psy3545 15 HNHNLKKILMCSSSNIKYFCNVSVYEQSFLNIVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYN-NNTFAYVFYW 93 (130)
Q Consensus 15 ~~~~~g~~lf~ig~~~~~~~~~~L~~~k~~~~~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~-~~~~~~~~~~ 93 (130)
|.+++|+++|++|++.|+.||.+|+++|+++.++++|+||+||+|++|+||||++||++|+|+++++++ +...++++++
T Consensus 209 ~~q~iGl~lFlig~~~n~~~H~iLa~LR~~k~~~~~Y~IP~GglF~~VSCPHYf~EIliw~gfal~t~~~~~~~~l~~~~ 288 (323)
T PLN03164 209 WFQWIGAAIFLWGWIHQYRCHAILGSLREHKKQADEYVIPYGDWFEMVSCPHYLAEIVIYAGLLIASGGTDLTIWLLFGF 288 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCceEECCCCCCcCeEcCCcHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 346899999999999999999999996633335789999999999999999999999999999999874 3334555689
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhccCCCcceeecccc
Q psy3545 94 VISNQFETSLLNHWWYQSKFTRQYPASRKAFIPYLL 129 (130)
Q Consensus 94 v~~~~~~~a~~~~~~y~~~F~~~Y~~~r~~lIPfI~ 129 (130)
+++||..||.++|+||++||+ ||||+||++||||+
T Consensus 289 v~~nL~~~A~~tHkWY~kkF~-dYPk~RkAIIPfI~ 323 (323)
T PLN03164 289 VVANLTFAAAETHRWYLQKFE-NYPRNRYAIIPFVY 323 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-ccccCceEecCccC
Confidence 999999999999999999997 99999999999986
No 4
>PLN02392 probable steroid reductase DET2
Probab=100.00 E-value=5.3e-36 Score=230.82 Aligned_cols=110 Identities=25% Similarity=0.388 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCcccccccCccceeecchhhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy3545 16 NHNLKKILMCSSSNIKYFCNVSVYEQSFLNIVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYWVI 95 (130)
Q Consensus 16 ~~~~g~~lf~ig~~~~~~~~~~L~~~k~~~~~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~~~~~~~~~v~ 95 (130)
..++|+++|++|+..|+.||.+|+++|++ .++|+||+||+|+||+|||||||+++|+|+++++++.. .+.++++++
T Consensus 151 ~~~iG~~lF~~g~~~N~~sh~~L~~LRk~---g~~Y~iP~GGlF~~VscPnYf~EileW~gfal~t~s~~-~~~F~~~~~ 226 (260)
T PLN02392 151 RFFGGLVVFLWGMRINVWSDRVLVGLKRE---GGGYKVPRGGWFELVSCPNYFGEIVEWLGWAVMTWSWA-GFGFFLYTC 226 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC---CCeeECCCCCCcCeEcCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 35799999999999999999999996643 26999999999999999999999999999999998543 444568999
Q ss_pred HHHHHHHHHHHHHhHHhhhhccCCCcceeecccc
Q psy3545 96 SNQFETSLLNHWWYQSKFTRQYPASRKAFIPYLL 129 (130)
Q Consensus 96 ~~~~~~a~~~~~~y~~~F~~~Y~~~r~~lIPfI~ 129 (130)
+|+..||.++|+||+|||+|||||+||++||||+
T Consensus 227 ~nl~~rA~~~hkwY~~kFg~~ypk~RkaiIPfi~ 260 (260)
T PLN02392 227 SNLVPRACANHKWYLEKFGEDYPKGRKAVIPFLY 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHccccccCCCeEecCccC
Confidence 9999999999999999998899999999999986
No 5
>PLN02560 enoyl-CoA reductase
Probab=99.98 E-value=6.4e-32 Score=213.23 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCcccccccCccceeecchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy3545 17 HNLKKILMCSSSNIKYFCNVSVYEQSFLNIVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYWVIS 96 (130)
Q Consensus 17 ~~~g~~lf~ig~~~~~~~~~~L~~~k~~~~~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~~~~~~~~~v~~ 96 (130)
.++|+++|++|++.|+.||.+|+++|+++ ++++|+||+||+|++|+||||++|+++|+||++++++.. .++++++.++
T Consensus 194 ~~~g~~lf~~~~~~N~~~h~~L~~LR~~~-g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~~~-~~~F~~~~~~ 271 (308)
T PLN02560 194 MKVGFGFGLVCQLANFYCHIILRNLRKPD-GKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQTVA-GYLFLAVAAA 271 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHccHH-HHHHHHHHHH
Confidence 48999999999999999999999965421 367999999999999999999999999999999998654 3444556667
Q ss_pred HHHHHHHHHHHHhHHhhhh-----ccCCCcceeeccc
Q psy3545 97 NQFETSLLNHWWYQSKFTR-----QYPASRKAFIPYL 128 (130)
Q Consensus 97 ~~~~~a~~~~~~y~~~F~~-----~Y~~~r~~lIPfI 128 (130)
+|..||.++|+||+++|+| +||++|++++||+
T Consensus 272 ~m~~wA~~kh~~Y~k~F~d~~~~~~yp~~~~~~pp~~ 308 (308)
T PLN02560 272 IMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 308 (308)
T ss_pred HHHHHHHHHHHHHHHhccCccccccCCCceEeCCCcC
Confidence 7779999999999999985 5998777777764
No 6
>KOG1640|consensus
Probab=99.97 E-value=3.1e-30 Score=198.98 Aligned_cols=114 Identities=31% Similarity=0.460 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCcccccccCccceeecchhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy3545 14 VHNHNLKKILMCSSSNIKYFCNVSVYEQSFLNIVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYW 93 (130)
Q Consensus 14 ~~~~~~g~~lf~ig~~~~~~~~~~L~~~k~~~~~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~~~~~~~~~ 93 (130)
.+.+++|.++|++|++.|..||.+|++.|.++...++|.+|+||+|++|+||||++|+++|.|++..... ...++++.|
T Consensus 191 ~i~q~~g~~iF~i~s~~Qy~~h~iL~nlrk~~~~~~~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~~~~-~~iwLv~~~ 269 (304)
T KOG1640|consen 191 SILQWLGLGIFAIGSIHQYASHEILGNLRKYPRQAKAYLIPKGGWFKLVSCPHYLAEIIIYVGIALGAPD-LTIWLVFGW 269 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhheecCCCCEeeecCChHHHHHHHHHHHHHhcCCc-hHHHHHHHH
Confidence 3357999999999999999999999996655446788999999999999999999999999998887654 445677899
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhccCCCcceeecccc
Q psy3545 94 VISNQFETSLLNHWWYQSKFTRQYPASRKAFIPYLL 129 (130)
Q Consensus 94 v~~~~~~~a~~~~~~y~~~F~~~Y~~~r~~lIPfI~ 129 (130)
|++||+..|.++|+||+++|+ +||++|+++|||++
T Consensus 270 V~~N~t~aA~~Th~wY~~kF~-~yp~~R~AiiPfl~ 304 (304)
T KOG1640|consen 270 VAANLTYAALETHRWYLKKFE-NYPKNRHAIIPFLY 304 (304)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-cCcccccccccccC
Confidence 999999999999999999999 99999999999986
No 7
>KOG1639|consensus
Probab=99.93 E-value=1.9e-26 Score=175.05 Aligned_cols=107 Identities=22% Similarity=0.296 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCccccc--ccCccceeecchhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy3545 17 HNLKKILMCSSSNIKYFCNVSVYEQSFLNIVTYDHLLP--TGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYWV 94 (130)
Q Consensus 17 ~~~g~~lf~ig~~~~~~~~~~L~~~k~~~~~~~~~~ip--~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~~~~~~~~~v 94 (130)
.++|++.|+++++.|+.||+.|+++|+. ++++.+|| +|-+|++|+||||+.|+..|+||++++++.. . .+++++
T Consensus 188 ~~~~l~~fv~~el~NF~~HI~LR~lrp~--g~k~r~ip~~~g~lFnlvscpNYt~Ev~sWi~F~i~tq~l~-a-~lFl~v 263 (297)
T KOG1639|consen 188 VKLGLGGFVLCELGNFSCHILLRNLRPA--GSKKRRIPLPDGFLFNLVSCPNYTYEVGSWIGFAIMTQCLA-A-YLFLTV 263 (297)
T ss_pred hhhhhHHHhhhhhcceeeEeehhhccCC--cCccceeecCCccEEEEEecCCcceehHHHHHHHHHHHHHH-H-HHHHHH
Confidence 4799999999999999999999998754 35566665 5669999999999999999999999999743 3 345677
Q ss_pred HHHHH-HHHHHHHHHhHHhhhhccCCCcceeeccc
Q psy3545 95 ISNQF-ETSLLNHWWYQSKFTRQYPASRKAFIPYL 128 (130)
Q Consensus 95 ~~~~~-~~a~~~~~~y~~~F~~~Y~~~r~~lIPfI 128 (130)
...|| .||+.+|+.|+|+|+ +||++|+.+|||+
T Consensus 264 g~aqMtiWA~~Kh~~ylKeFp-~Ypr~r~~iiPFv 297 (297)
T KOG1639|consen 264 GAAQMTIWAKGKHRRYLKEFP-DYPRRRKIIIPFV 297 (297)
T ss_pred HHHHHHHHHHhhhHhHhhhcc-cCCccccccCCCC
Confidence 66666 999999999999999 9999999999996
No 8
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=99.86 E-value=6.3e-22 Score=150.65 Aligned_cols=120 Identities=16% Similarity=0.204 Sum_probs=88.0
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCcccccccCccceeecchhhHHHHHHHHHHHHhhhhh
Q psy3545 6 AGSSKPNPVHNHNLKKILMCSSSNIKYFCNVSVYEQSFLNIVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNN 85 (130)
Q Consensus 6 ~~~~~~~~~~~~~~g~~lf~ig~~~~~~~~~~L~~~k~~~~~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~ 85 (130)
++...+...+.+++|++++++|+.++..+|.||..+|.+ ..+|+++++.|+|+++||||||||.+.|+|+.+++-+.+
T Consensus 139 ~~~~~~~~~~~d~~g~~iwivg~~fE~lgD~QL~~Fk~~--P~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~ 216 (272)
T COG3752 139 ALNGPREFGWWDVIGLAIWIVGIVFEALGDAQLWVFKKD--PRNKGKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISEW 216 (272)
T ss_pred hcCCCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHhC--hhhccccccccceecccCcchHHHHHHHHHHHHHHHhhh
Confidence 333444445668999999999999999999999997765 478999999999999999999999999999999886422
Q ss_pred HHH----HH--HHHHHHHHHHHHHHHHHHhH--HhhhhccCCCcceeeccc
Q psy3545 86 TFA----YV--FYWVISNQFETSLLNHWWYQ--SKFTRQYPASRKAFIPYL 128 (130)
Q Consensus 86 ~~~----~~--~~~v~~~~~~~a~~~~~~y~--~~F~~~Y~~~r~~lIPfI 128 (130)
... -+ ..+.+.....--..+|+.++ +.|+ +|++++.+++|++
T Consensus 217 ~~~W~~~sPllmt~LL~~vSGvp~l~ekm~k~r~~fr-~Yq~rt~~F~P~~ 266 (272)
T COG3752 217 LLLWAVASPLLMTWLLVHVSGVPPLEEKMLKSRPGFR-EYQRRTNAFFPRP 266 (272)
T ss_pred hHhhhcccHHHHHHHHHHhcCCChHHHHHhcccHhHH-HHHHHhcccCCCC
Confidence 110 01 11222222211123444444 5787 9999999999986
No 9
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=99.84 E-value=2.1e-20 Score=142.84 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCcccccccCccceeecchhhHHHHHHHHHHHHhhhh
Q psy3545 14 VHNHNLKKILMCSSSNIKYFCNVSVYEQSFLNIVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNN 84 (130)
Q Consensus 14 ~~~~~~g~~lf~ig~~~~~~~~~~L~~~k~~~~~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~ 84 (130)
...+++|++++++|+.+|..+|.|+.++|.+ .+++.+++++|+|+|+||||||||++.|+|+.+++.+.
T Consensus 118 ~~~~~~g~~l~~~g~~~E~~AD~Q~~~fk~~--~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~ 186 (235)
T PF06966_consen 118 NWLDILGIALFLIGFLLETVADQQKYRFKKD--PANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISS 186 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--cccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhh
Confidence 4447999999999999999999999997654 34577799999999999999999999999999998754
No 10
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=99.68 E-value=9.6e-16 Score=103.05 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcc-ccc--CCcccccccCccceeecchhhHHHHHHHHHHHHhhhhhHHHHHHH
Q psy3545 16 NHNLKKILMCSSSNIKYFCNVSVYEQSFL-NIV--TYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFY 92 (130)
Q Consensus 16 ~~~~g~~lf~ig~~~~~~~~~~L~~~k~~-~~~--~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~~~~~~~~ 92 (130)
..++|++++++|......+...++..... ... +++.++.++|+|++||||-|+|.++.++|.+++.++.+..++..+
T Consensus 2 ~~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~~l~~~~~ 81 (106)
T PF04191_consen 2 RFVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGSWLGLLLAVL 81 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 35799999999999999999999984422 111 345668899999999999999999999999999877554444333
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhcc
Q psy3545 93 WVISNQFETSLLNHWWYQSKFTRQY 117 (130)
Q Consensus 93 ~v~~~~~~~a~~~~~~y~~~F~~~Y 117 (130)
..+.........||+..+++|+|+|
T Consensus 82 ~~~~~~~~~~~~EE~~L~~~fG~~Y 106 (106)
T PF04191_consen 82 AFLLYYIFIIRFEERFLERRFGEEY 106 (106)
T ss_pred HHHHHHHHHHHhHHHHHHHHhCcCC
Confidence 4444445566689999999999887
No 11
>KOG4650|consensus
Probab=99.66 E-value=7.9e-16 Score=117.57 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=81.6
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc-cCCccc-ccccCccceeecchhhHHHHHHHHHHHHhhh
Q psy3545 6 AGSSKPNPVHNHNLKKILMCSSSNIKYFCNVSVYEQSFLNI-VTYDHL-LPTGGLFNFVSSPHLFCEALIYLSLYLILYN 83 (130)
Q Consensus 6 ~~~~~~~~~~~~~~g~~lf~ig~~~~~~~~~~L~~~k~~~~-~~~~~~-ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~ 83 (130)
++..+....| +++|..++++|+.+++.+|.|+-++++++. ..+..| -++.|+|+|+|||||+||-+.|+|+.+.+.+
T Consensus 167 ~d~~r~f~~w-D~I~~~m~~~gfvie~~ADqQ~~~f~~~~~~l~~~Gk~~~d~GlwrySRHPNylgEqL~Wwglyvfa~~ 245 (311)
T KOG4650|consen 167 SDGGRAFGPW-DVIGWTMWVFGFVIEALADQQKLSFKEARYDLENLGKGWCDVGLWRYSRHPNYLGEQLLWWGLYVFAAP 245 (311)
T ss_pred cCCccccChH-HHHHHHHHHHHHHHHHHhhhhhhhHHhhhcCHHHcCCccccccceeeccCccHHHHHHHHHHHHHHHhh
Confidence 4555557788 799999999999999999999999553211 122333 7899999999999999999999999998754
Q ss_pred h-----hHHHHHHHHHHHHHHHHHH---HHHHHhHHhhhhccCCCcceeecccc
Q psy3545 84 N-----NTFAYVFYWVISNQFETSL---LNHWWYQSKFTRQYPASRKAFIPYLL 129 (130)
Q Consensus 84 ~-----~~~~~~~~~v~~~~~~~a~---~~~~~y~~~F~~~Y~~~r~~lIPfI~ 129 (130)
. +....-..++.+.+...+. .+.+.| +-|+ .|+|++.++||..+
T Consensus 246 ~~egl~wtvi~~lv~~~~l~~~t~lie~~~v~~~-~aYR-~Yqktts~~ip~~f 297 (311)
T KOG4650|consen 246 VLEGLEWTVIAGLVFLTLLLLFTSLIELLEVEKY-PAYR-VYQKTTSRFIPRLF 297 (311)
T ss_pred hhccchHHHHHHHHHHHHHHHHHhhhhhhhhhhh-HHHH-HHHhcccccccccc
Confidence 2 1111112233333221111 111111 1455 89999999999643
No 12
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.3e-15 Score=112.81 Aligned_cols=120 Identities=16% Similarity=0.112 Sum_probs=97.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-cccCCcccccccCccceeecchhhHHHHHHHHHHHHhhhhhHHH
Q psy3545 10 KPNPVHNHNLKKILMCSSSNIKYFCNVSVYEQSFL-NIVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFA 88 (130)
Q Consensus 10 ~~~~~~~~~~g~~lf~ig~~~~~~~~~~L~~~k~~-~~~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~~~~ 88 (130)
.+.+.+...+|+.+..+|...-.+++.++.+.... ...++++++.++|.|++||||-|+|.++.++|..+..++.+..+
T Consensus 63 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~~~~l~ 142 (187)
T COG2020 63 SLIPSWIVGLGLLLVGLGLALRLWAMRTLGRSWTVSVKARKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGSLWALL 142 (187)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCCCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34556767899999999999999999999985322 22467999999999999999999999999999998887655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhh---ccCCCcceeecccc
Q psy3545 89 YVFYWVISNQFETSLLNHWWYQSKFTR---QYPASRKAFIPYLL 129 (130)
Q Consensus 89 ~~~~~v~~~~~~~a~~~~~~y~~~F~~---~Y~~~r~~lIPfI~ 129 (130)
.+..+....+..++..||+.++++|+| ||+++.+++||.+.
T Consensus 143 ~~~~~~~~~~~~~i~~EEr~L~~~fg~~Y~~Y~~rV~r~iP~~~ 186 (187)
T COG2020 143 IFVVLVALLFLFRIREEERYLRAEFGDEYREYRKRVPRLIPPLV 186 (187)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhCCccCCCCC
Confidence 433344444468999999999999986 68889999999874
No 13
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=99.47 E-value=7.9e-13 Score=88.15 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCcccccCCcccccccCccceeecchhhHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHH
Q psy3545 21 KILMCSSSNIKYFCNVSVYE-QSFLNIVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNN-TFAYVFYWVISNQ 98 (130)
Q Consensus 21 ~~lf~ig~~~~~~~~~~L~~-~k~~~~~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~-~~~~~~~~v~~~~ 98 (130)
++++++|..++.++..+|++ ........++|++.+.|+|+++|||||+|-++..+|...+..+.+ .....+......+
T Consensus 2 l~~~i~g~~lr~~a~~~LG~~ft~~v~~~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l 81 (94)
T PF04140_consen 2 LGLFIAGQLLRYWAIRTLGRYFTHRVIIQPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLLFNAWLTALILFALVAWLL 81 (94)
T ss_dssp ---HHHHHHHHHHHHHHHGGG--SS--EETT-----SSTTTTBSSHHHHH-HHHHHHHHHHHHT-HHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHccccCcEEEEecCCCEEecccccccccCchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45789999999999999999 333222467899999999999999999998888888777665542 2222223334444
Q ss_pred HHHHHHHHHHhH
Q psy3545 99 FETSLLNHWWYQ 110 (130)
Q Consensus 99 ~~~a~~~~~~y~ 110 (130)
..|+..||+.+.
T Consensus 82 ~~RI~~EE~~L~ 93 (94)
T PF04140_consen 82 FVRIREEERALI 93 (94)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 589988888664
No 14
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=99.41 E-value=1.3e-12 Score=107.80 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccc-----------cCCcccccccCccceeecchhhHHHHHHHHHHHHhhhhhH
Q psy3545 18 NLKKILMCSSSNIKYFCNVSVYEQSFLNI-----------VTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNT 86 (130)
Q Consensus 18 ~~g~~lf~ig~~~~~~~~~~L~~~k~~~~-----------~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~~ 86 (130)
..-.++.++|.++...|+.|..++|.++. .+++-++-..|+|.++|||||+||+++-+++.+.++.+..
T Consensus 305 ~~i~~l~~~gy~i~r~sn~QK~~FR~~p~~p~~~~~~~~~t~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~gf~~~ 384 (432)
T PF01222_consen 305 AAILALGLVGYYIFRGSNSQKNRFRRNPKDPKVIHLKYIPTKRGSKLLVSGWWGIARHPNYLGDILMALAWCLPCGFSSI 384 (432)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHhcCCCCCCcccccceeecCCCCeEEEcChhHhhcccchHHHHHHHHHHHHHHhcCcc
Confidence 44566888999999999999999552210 1233456678999999999999999999999999875432
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHhHHhhhh---ccCC-Ccceeecccc
Q psy3545 87 FA-YVFYWVISNQFETSLLNHWWYQSKFTR---QYPA-SRKAFIPYLL 129 (130)
Q Consensus 87 ~~-~~~~~v~~~~~~~a~~~~~~y~~~F~~---~Y~~-~r~~lIPfI~ 129 (130)
.. +..++..+.++-|+...++.-++||++ +|.+ -++++||+||
T Consensus 385 ~pyfy~~~~~~lL~hR~~RD~~rC~~KYG~~W~~Yc~~Vpy~~iP~iy 432 (432)
T PF01222_consen 385 LPYFYPIFFTILLIHRARRDEERCRKKYGKDWDEYCKRVPYRIIPGIY 432 (432)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhCHHHHHHHHhCCEEEeCCcC
Confidence 22 223566666779999998888888884 6866 8999999996
No 15
>KOG1435|consensus
Probab=99.13 E-value=9.8e-11 Score=95.36 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=84.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc---c--------cCCcccccccCccceeecchhhHHHHHHHHHHHHh
Q psy3545 13 PVHNHNLKKILMCSSSNIKYFCNVSVYEQSFLN---I--------VTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLIL 81 (130)
Q Consensus 13 ~~~~~~~g~~lf~ig~~~~~~~~~~L~~~k~~~---~--------~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~ 81 (130)
+.+....-.++.+.|..+...|+.|.-.+|.++ + .+++-++-..|+|.++|||||+||+++-+++++.+
T Consensus 296 ~~~~a~~i~~l~l~gyyifr~an~QK~~FRkn~~~~~~~~i~~i~t~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~ 375 (428)
T KOG1435|consen 296 GWPMAVGILVLLLLGYYIFRGANAQKNEFRKNPGDPKLKNIKTIYTSTGSKLLVSGWWGVARHPNYLGDLIMALAWSLPC 375 (428)
T ss_pred chHHHHHHHHHHHhheeEeeccchhHHHHhcCCCCCccccccceEeccCCeEEeechhhhhcCcCcHHHHHHHHHHHHhc
Confidence 344344555677888889999999999844321 0 12345666789999999999999999999999998
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHHHHHHHhHHhhhh---ccCC-Ccceeecccc
Q psy3545 82 YNNNTFAY-VFYWVISNQFETSLLNHWWYQSKFTR---QYPA-SRKAFIPYLL 129 (130)
Q Consensus 82 ~~~~~~~~-~~~~v~~~~~~~a~~~~~~y~~~F~~---~Y~~-~r~~lIPfI~ 129 (130)
+.+..... ..++....++-|+...+..-+.||++ +|.+ -+.++||+|+
T Consensus 376 gf~s~lpyfy~iyf~~LLvhR~~RDe~rC~~KYG~~W~~Yc~~VpyriiP~Vy 428 (428)
T KOG1435|consen 376 GFNSPLPYFYPIYFTLLLVHRAARDEHRCRSKYGEDWEEYCRKVPYRILPYVY 428 (428)
T ss_pred cCCCCcchHHHHHHHHHHHHHHhhhHHHHHHHHhhhHHHHHhhCCcccCCCCC
Confidence 75432222 24566666777887766666666663 6755 8999999986
No 16
>KOG2628|consensus
Probab=99.12 E-value=1.2e-10 Score=86.20 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=66.7
Q ss_pred CCcccccccCccceeecchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHhHHhhhh---ccCCCcce
Q psy3545 48 TYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYWVISNQF-ETSLLNHWWYQSKFTR---QYPASRKA 123 (130)
Q Consensus 48 ~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~~~~~~~~~v~~~~~-~~a~~~~~~y~~~F~~---~Y~~~r~~ 123 (130)
.++|++.+.|.|+|+|||-|.|=++.++|--++.. |+...+++++|+.+.. .|+..||+-+.+-|++ ||+|+.+.
T Consensus 117 ~~~h~lv~~GvY~y~RHPsY~g~flw~~gtq~~L~-npis~v~f~~V~w~ff~~Ri~~EE~~Li~fFg~~Y~eY~kkV~s 195 (201)
T KOG2628|consen 117 VSDHKLVTSGVYAYVRHPSYVGFFLWAAGTQTMLC-NPISLVAFLLVVWRFFADRIKEEEKYLISFFGSSYVEYAKKVPS 195 (201)
T ss_pred ccCceeEeccchhheeCchHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHhCCc
Confidence 46899999999999999999999999999999875 4545555677777765 9999999988888875 67887777
Q ss_pred eeccc
Q psy3545 124 FIPYL 128 (130)
Q Consensus 124 lIPfI 128 (130)
=||||
T Consensus 196 GiPfi 200 (201)
T KOG2628|consen 196 GIPFI 200 (201)
T ss_pred CCCCC
Confidence 79987
No 17
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.08 E-value=1.3e-09 Score=78.87 Aligned_cols=102 Identities=16% Similarity=0.015 Sum_probs=80.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc-cCCcccccccCccceeecchhhH-HHHHHHHHHHHhhhhhHHHH
Q psy3545 12 NPVHNHNLKKILMCSSSNIKYFCNVSVYEQSFLNI-VTYDHLLPTGGLFNFVSSPHLFC-EALIYLSLYLILYNNNTFAY 89 (130)
Q Consensus 12 ~~~~~~~~g~~lf~ig~~~~~~~~~~L~~~k~~~~-~~~~~~ip~~GlF~~v~~PnY~~-Eil~w~g~~l~~~~~~~~~~ 89 (130)
...|..++|+++++......+++-.+|++....+. .-+++++.+.|+|++++||||+- -+..-+|..+.++.+.+..+
T Consensus 66 ~f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~~v~sglfk~~kHPNYflnIipEligl~Ll~~A~~Ta~l 145 (172)
T COG1755 66 FFNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQAWYTALL 145 (172)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCceeeccccchhccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555678999999999999999999999654322 44678888999999999999999 78889999999987665554
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhh
Q psy3545 90 VFYWVISNQFETSLLNHWWYQSKF 113 (130)
Q Consensus 90 ~~~~v~~~~~~~a~~~~~~y~~~F 113 (130)
++..-+..+..|.++|++.+.+-+
T Consensus 146 ~~p~ya~~L~vRIr~EekaL~~~~ 169 (172)
T COG1755 146 FSPIYALLLYVRIRQEEKALAELF 169 (172)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhc
Confidence 444444556699999999877654
No 18
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=96.80 E-value=0.01 Score=42.81 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCc--c-cccCCcccccccCccceeecchhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy3545 18 NLKKILMCSSSNIKYFCNVSVYEQSF--L-NIVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYWV 94 (130)
Q Consensus 18 ~~g~~lf~ig~~~~~~~~~~L~~~k~--~-~~~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~~~~~~~~~v 94 (130)
..|.+++.+|.+.+..+-.+|+.-.. | .-+.... ..++-.|++.++|.|-|+++.++|.++.... -.+.+|+
T Consensus 67 l~~~~L~aiGq~Lv~ss~~~LG~tGTYlGdyFGilm~-~VT~FPFnv~~nPmY~GStl~fLg~al~~p~----~~~~lW~ 141 (164)
T PLN02797 67 LYFWPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKNIP-WVTEFPFGVIRDPQYVGSILSLLACLSWVPF----QYILLWC 141 (164)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCceeeehhhhccccc-ccccCCCCCCCCcchhhHHHHHHHHHHHhhH----HHHHHHH
Confidence 45889999999999999999987221 1 0011122 4599999999999999999999999997622 2344566
Q ss_pred HHH
Q psy3545 95 ISN 97 (130)
Q Consensus 95 ~~~ 97 (130)
+..
T Consensus 142 lgY 144 (164)
T PLN02797 142 LGY 144 (164)
T ss_pred HHH
Confidence 554
No 19
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=94.32 E-value=0.48 Score=35.31 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=36.1
Q ss_pred ccceeecchhhHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhHHhhhhccCC--Ccceeec
Q psy3545 58 LFNFVSSPHLFCEALIYLSLYLILYNNNTF-AYVFYWVISNQFETSLLNHWWYQSKFTRQYPA--SRKAFIP 126 (130)
Q Consensus 58 lF~~v~~PnY~~Eil~w~g~~l~~~~~~~~-~~~~~~v~~~~~~~a~~~~~~y~~~F~~~Y~~--~r~~lIP 126 (130)
+++.+|||-+.|-. +|..-.++.+.+... +++..+.+.-+.....++.+ ++ ++++|++ ++....|
T Consensus 96 i~r~~RHP~l~g~~-lWA~aHLl~nGd~~~~lLFg~~~~~al~~~~~~~rr--~~-~g~~~~~~~~~~s~~~ 163 (191)
T PF07298_consen 96 IYRITRHPMLLGVL-LWALAHLLANGDLASLLLFGGFLAWALIGIILIDRR--RR-FGDAWRAYPRRTSIWP 163 (191)
T ss_pred HHHHhcCchHHHHH-HHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHh--hc-cccccccccCCCCCCC
Confidence 99999999999965 477666666544432 22222333333333333333 44 6655542 4445555
No 20
>KOG4142|consensus
Probab=91.73 E-value=0.98 Score=33.26 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccc--cCCcccccccCccceeecchhhHHHHHHHHHHHHhhh
Q psy3545 11 PNPVHNHNLKKILMCSSSNIKYFCNVSVYEQS--FLNI--VTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYN 83 (130)
Q Consensus 11 ~~~~~~~~~g~~lf~ig~~~~~~~~~~L~~~k--~~~~--~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~ 83 (130)
.+|.| .-+|+++|.+|...-..+-..|+--- -|+- .-++-++ +|..|+-.-+|-|-|..+.++|++++-+.
T Consensus 93 ~~p~~-~~lg~alfglG~VLVLSSmykLG~~GTyLGDYFGiL~~eRV-tgFPFNv~dNPMY~GSTl~fLg~Al~~gk 167 (208)
T KOG4142|consen 93 DTPAA-YSLGLALFGLGVVLVLSSMYKLGFAGTYLGDYFGILKEERV-TGFPFNVLDNPMYWGSTLNFLGWALMHGK 167 (208)
T ss_pred cChHH-HHHHHHHHhhhHHHHHHHHHHhccchhhhhhhhhhhhhhhc-ccccccccCCcccccchHHHHHHHHHcCC
Confidence 34556 56999999999988887777665400 0000 1233343 89999999999999999999999999765
No 21
>COG4094 Predicted membrane protein [Function unknown]
Probab=86.76 E-value=1.4 Score=33.26 Aligned_cols=73 Identities=11% Similarity=0.122 Sum_probs=46.2
Q ss_pred ccCccceeecchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhc--cCCCcceeeccc
Q psy3545 55 TGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYWVISNQFETSLLNHWWYQSKFTRQ--YPASRKAFIPYL 128 (130)
Q Consensus 55 ~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~~~~~~~~~v~~~~~~~a~~~~~~y~~~F~~~--Y~~~r~~lIPfI 128 (130)
.|+.=+-.|||.-.|..+.=+|=.+..+...+.+++..|.+.....+...+.++ +++++|. -++.++..+||.
T Consensus 100 ~g~Ii~itRHP~l~g~~iWalaHll~nGd~~Svllfggf~l~~~~~~~~~~rR~-r~r~g~a~~~~~~~ts~~pfa 174 (219)
T COG4094 100 EGRIIRITRHPQLLGVVIWALAHLLANGDTFSVLLFGGFLLWAVVGVWSGDRRA-RKRYGEAFVAPVQVTSRIPFA 174 (219)
T ss_pred CCceEEEecCchhHHHHHHHHHHhhccCceeeHHHHHHHHHHHHHHhhhhhhhh-hcccCcceeeeeccccccchh
Confidence 578889999999999988777766665543334444444444444444444333 5556543 355778888873
No 22
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=80.50 E-value=5.3 Score=26.93 Aligned_cols=57 Identities=14% Similarity=0.282 Sum_probs=31.8
Q ss_pred ccccccCcc--ceeecchhhHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3545 51 HLLPTGGLF--NFVSSPHLFCEALIYLSLYLILY---------NNNTFAYVFYWVISNQFETSLLNHW 107 (130)
Q Consensus 51 ~~ip~~GlF--~~v~~PnY~~Eil~w~g~~l~~~---------~~~~~~~~~~~v~~~~~~~a~~~~~ 107 (130)
..+|+++.| ++|..=|=.+|+.+.+.+.++.. +.......+++.......||.+|.+
T Consensus 14 l~i~k~~~~~~~~vn~~h~~~e~~i~i~~ii~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ra~mEWK 81 (110)
T PF13789_consen 14 LNIPKKKFFSYKHVNKLHKKGEWIIFIIFIILIFIFLFIFIFRFFYPYILIFLFLIILFCFRAFMEWK 81 (110)
T ss_pred cCCCCCcCCCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777777 55555556677777666666541 1122233344555555678766633
No 23
>PF15584 Imm44: Immunity protein 44
Probab=73.68 E-value=1.4 Score=29.18 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=17.8
Q ss_pred cCCcccccccCccc---------eeecchhh
Q psy3545 47 VTYDHLLPTGGLFN---------FVSSPHLF 68 (130)
Q Consensus 47 ~~~~~~ip~~GlF~---------~v~~PnY~ 68 (130)
..++.+||-.|.|+ ++.|||||
T Consensus 19 I~SG~~iP~~GIwEPv~~~~~K~~~gc~NYf 49 (94)
T PF15584_consen 19 IKSGQEIPCDGIWEPVDAPKPKLNVGCPNYF 49 (94)
T ss_pred EecCCCcccCCeEccccCCCCccccCcchhh
Confidence 56788899999986 45699997
No 24
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=55.48 E-value=1e+02 Score=24.37 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--cCcccccCCcccccccCccceeecchhhHHHHHHHHHHHHhh
Q psy3545 18 NLKKILMCSSSNIKYFCNVSVYE--QSFLNIVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILY 82 (130)
Q Consensus 18 ~~g~~lf~ig~~~~~~~~~~L~~--~k~~~~~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~ 82 (130)
++|+.+-++|...+..+....++ .|.+ +...+.+ .+-..|+-+-+.|+|+.++..
T Consensus 6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~-----~~~~~~~-----~~~~~~l~~~~W~~G~~~~~~ 62 (300)
T PF05653_consen 6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLP-----RGSLRAG-----SGGRSYLRRPLWWIGLLLMVL 62 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccccccc-----chhhHHHhhHHHHHHHHHHhc
Confidence 57788777777665555443333 3321 1111110 112378888899999988654
No 25
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=47.56 E-value=52 Score=22.13 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.5
Q ss_pred cCCcccccccCccc
Q psy3545 47 VTYDHLLPTGGLFN 60 (130)
Q Consensus 47 ~~~~~~ip~~GlF~ 60 (130)
+++-|.+|.||-|+
T Consensus 36 GDniH~LPhGG~Yr 49 (104)
T PF01307_consen 36 GDNIHSLPHGGRYR 49 (104)
T ss_pred CCCCCCCCCCCccc
Confidence 67899999999996
No 26
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=46.66 E-value=29 Score=22.71 Aligned_cols=27 Identities=4% Similarity=-0.018 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcc
Q psy3545 18 NLKKILMCSSSNIKYFCNVSVYEQSFL 44 (130)
Q Consensus 18 ~~g~~lf~ig~~~~~~~~~~L~~~k~~ 44 (130)
..+++++++|...|...|....++||.
T Consensus 45 ~~~l~~~~~g~~~q~~GH~~~E~~~Pa 71 (95)
T PF06127_consen 45 WLALAVFVVGWGLQFIGHFFFEKNKPA 71 (95)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcCCCc
Confidence 466778889999999999988888864
No 27
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=37.20 E-value=52 Score=21.55 Aligned_cols=26 Identities=23% Similarity=0.032 Sum_probs=21.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHH
Q psy3545 8 SSKPNPVHNHNLKKILMCSSSNIKYF 33 (130)
Q Consensus 8 ~~~~~~~~~~~~g~~lf~ig~~~~~~ 33 (130)
.++|+|.|+..+-+.++++|.+.-..
T Consensus 26 ~~~~sP~W~~~~m~~lm~~Gl~Wlvv 51 (87)
T PRK02251 26 GTKSNPRWFVPLFVALMIIGLIWLVV 51 (87)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 46889999988999999999876543
No 28
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=36.80 E-value=93 Score=21.31 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCc----ccccCCcccccccCccceeecch
Q psy3545 19 LKKILMCSSSNIKYFCNVSVYEQSF----LNIVTYDHLLPTGGLFNFVSSPH 66 (130)
Q Consensus 19 ~g~~lf~ig~~~~~~~~~~L~~~k~----~~~~~~~~~ip~~GlF~~v~~Pn 66 (130)
+|+++.+++...+.+-...-.+... .+.........+-|+|+.+...+
T Consensus 2 la~~L~~ia~~T~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~Glw~~c~~~~ 53 (172)
T PF13903_consen 2 LALILLIIAFGTPYWVVSDPRRTGFNCTESNNSVNFGLFSHSGLWRICFQRE 53 (172)
T ss_pred hHHHHHHHHHcCchHhEEeeeccCccccccccccccccccccCcceEeecCC
Confidence 6889999999988886643333110 00012344555779998887655
No 29
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=30.45 E-value=73 Score=20.86 Aligned_cols=26 Identities=19% Similarity=0.004 Sum_probs=21.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHH
Q psy3545 8 SSKPNPVHNHNLKKILMCSSSNIKYF 33 (130)
Q Consensus 8 ~~~~~~~~~~~~g~~lf~ig~~~~~~ 33 (130)
...|+|.|...+-+.++++|.+.-..
T Consensus 25 ~~~~sp~W~~~~m~glm~~GllWlvv 50 (87)
T PRK00159 25 KAGPSSVWYVVLMLGLMLIGLAWLVV 50 (87)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 36789999988999999999876543
No 30
>KOG4050|consensus
Probab=28.42 E-value=2.5e+02 Score=20.78 Aligned_cols=20 Identities=15% Similarity=0.374 Sum_probs=15.0
Q ss_pred eecchhhHHHHHHHHHHHHh
Q psy3545 62 VSSPHLFCEALIYLSLYLIL 81 (130)
Q Consensus 62 v~~PnY~~Eil~w~g~~l~~ 81 (130)
.+||-|+---++-.|+.++.
T Consensus 106 ~~hp~~~l~gvllv~yfli~ 125 (188)
T KOG4050|consen 106 TDHPLVTLAGVLLVGYFLIS 125 (188)
T ss_pred hcCcHHHHHHHHHHHHHHHH
Confidence 46888887777777777764
No 31
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=26.88 E-value=98 Score=20.21 Aligned_cols=23 Identities=26% Similarity=0.066 Sum_probs=19.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHH
Q psy3545 10 KPNPVHNHNLKKILMCSSSNIKY 32 (130)
Q Consensus 10 ~~~~~~~~~~g~~lf~ig~~~~~ 32 (130)
+|+|.|+..+-+.++++|.+.=.
T Consensus 27 ~~sp~W~~p~m~~lmllGL~WiV 49 (87)
T PF06781_consen 27 KPSPRWYAPLMLGLMLLGLLWIV 49 (87)
T ss_pred CCCCccHHHHHHHHHHHHHHHHh
Confidence 79999998999999999987644
No 32
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.51 E-value=77 Score=21.69 Aligned_cols=28 Identities=7% Similarity=-0.022 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy3545 15 HNHNLKKILMCSSSNIKYFCNVSVYEQS 42 (130)
Q Consensus 15 ~~~~~g~~lf~ig~~~~~~~~~~L~~~k 42 (130)
|+.++.++++++-+++-+.++...+++|
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4334444444444444455554444443
No 33
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.13 E-value=2.4e+02 Score=19.98 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy3545 66 HLFCEALIYLSLYLILYNNNTFAYVFYWVISNQFETSLL 104 (130)
Q Consensus 66 nY~~Eil~w~g~~l~~~~~~~~~~~~~~v~~~~~~~a~~ 104 (130)
|.+.|.-.+.+++++.|- +..++++.+..++..
T Consensus 2 nwt~~~W~~a~igLvvGi------~IG~li~Rlt~~~~k 34 (138)
T COG3105 2 NWTFMTWEYALIGLVVGI------IIGALIARLTNRKLK 34 (138)
T ss_pred chhHHHHHHHHHHHHHHH------HHHHHHHHHcchhhh
Confidence 567788888888887652 234555666555433
No 34
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=23.89 E-value=21 Score=31.14 Aligned_cols=51 Identities=10% Similarity=-0.069 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhcCcccc-cCCcccccccCccceeecchhhHH
Q psy3545 19 LKKILMCSSSNIKY-FCNVSVYEQSFLNI-VTYDHLLPTGGLFNFVSSPHLFCE 70 (130)
Q Consensus 19 ~g~~lf~ig~~~~~-~~~~~L~~~k~~~~-~~~~~~ip~~GlF~~v~~PnY~~E 70 (130)
+|++++++|..... +....-.+.++|+. .-.+|++-..|. +.+..|||..|
T Consensus 434 ~Gval~~~Gi~~ss~~~~e~~~~L~pGet~~~~~y~~~y~~~-~~~~gpn~~a~ 486 (576)
T TIGR00353 434 LGVALTAAGIVFSQNFSVEIDVRLKPGQSVTLGGYTFRFRCV-DLEAGPNYTGE 486 (576)
T ss_pred HHHHHHHHHHHHHcccceeEEEEECCCCcEEEcCEEEEEeee-eecCCCCceEE
Confidence 78888888887653 33322223555532 224566644444 55677888754
No 35
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=23.11 E-value=1.8e+02 Score=23.41 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=12.0
Q ss_pred HHHHHHH-HhHHhhhhccCCC
Q psy3545 101 TSLLNHW-WYQSKFTRQYPAS 120 (130)
Q Consensus 101 ~a~~~~~-~y~~~F~~~Y~~~ 120 (130)
++.+|-| -.+++|+|+|..+
T Consensus 155 ~ad~EiR~YIre~F~e~YG~D 175 (310)
T PF10319_consen 155 YADDEIRDYIRESFREVYGVD 175 (310)
T ss_pred CCCHHHHHHHHHHHHHHhCCC
Confidence 3444444 4467888888764
No 36
>PHA00728 hypothetical protein
Probab=22.13 E-value=18 Score=25.34 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=11.6
Q ss_pred ccceeecchhhHH
Q psy3545 58 LFNFVSSPHLFCE 70 (130)
Q Consensus 58 lF~~v~~PnY~~E 70 (130)
-|++.|-|.||||
T Consensus 77 AfEfarLP~YFgE 89 (151)
T PHA00728 77 AFEFARLPAYFGE 89 (151)
T ss_pred HHHHhhchhhhCC
Confidence 4889999999997
No 37
>PF15050 SCIMP: SCIMP protein
Probab=21.63 E-value=2e+02 Score=20.18 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHHH----HHHHHHHHHHhh
Q psy3545 13 PVHNHNLKKILMCSSS----NIKYFCNVSVYE 40 (130)
Q Consensus 13 ~~~~~~~g~~lf~ig~----~~~~~~~~~L~~ 40 (130)
..| .++++++.+++. +.-..|..+|++
T Consensus 7 nFW-iiLAVaII~vS~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 7 NFW-IILAVAIILVSVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456 466666665554 333457777776
No 38
>COG4539 Predicted membrane protein [Function unknown]
Probab=21.33 E-value=13 Score=27.21 Aligned_cols=17 Identities=6% Similarity=-0.082 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3545 19 LKKILMCSSSNIKYFCN 35 (130)
Q Consensus 19 ~g~~lf~ig~~~~~~~~ 35 (130)
-|+++|++|.++|+..|
T Consensus 103 ~~lglfvIgWI~QFVGH 119 (180)
T COG4539 103 QGLGLFVIGWIFQFVGH 119 (180)
T ss_pred cCceeeeehHHHHhccc
Confidence 34444444444444444
No 39
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=21.01 E-value=51 Score=22.51 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=13.4
Q ss_pred CcccccccCccceeecchhhHHH
Q psy3545 49 YDHLLPTGGLFNFVSSPHLFCEA 71 (130)
Q Consensus 49 ~~~~ip~~GlF~~v~~PnY~~Ei 71 (130)
++| |..+| |++||-|.|.+
T Consensus 43 rdY-Il~~g---fCSCp~~~~sv 61 (117)
T COG5431 43 RDY-ILEGG---FCSCPDFLGSV 61 (117)
T ss_pred cce-EEEcC---cccCHHHHhHh
Confidence 355 44666 89999988754
No 40
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.01 E-value=3e+02 Score=19.00 Aligned_cols=27 Identities=11% Similarity=-0.036 Sum_probs=17.6
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHHHHH
Q psy3545 3 DLRAGSSKPNPVHNHNLKKILMCSSSNI 30 (130)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~~lf~ig~~~ 30 (130)
.+.++.+.|.-.+ .++|++.=++|.++
T Consensus 56 ql~h~fs~~~i~~-Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 56 QLVHRFSEPAIIG-IIFGVMAGVIGIIL 82 (122)
T ss_dssp SSSSSSS-TCHHH-HHHHHHHHHHHHHH
T ss_pred ccccCccccceee-hhHHHHHHHHHHHH
Confidence 4677788887666 46777766677653
Done!