Query psy3545
Match_columns 130
No_of_seqs 107 out of 1032
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:23:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.9 2.6E-22 8.7E-27 148.5 11.8 119 11-129 72-194 (194)
2 1rpq_W Peptide E131; receptor- 40.7 6.8 0.00023 18.6 0.2 10 62-71 1-10 (26)
3 3kj0_B BCL-2-like protein 11; 21.1 79 0.0027 15.2 2.1 19 100-118 8-26 (27)
4 1wpw_A 3-isopropylmalate dehyd 20.3 63 0.0022 25.1 2.7 27 56-82 210-236 (336)
5 2wh6_B BCL-2-like protein 11; 20.2 87 0.003 14.9 2.3 20 100-119 6-25 (26)
6 3blx_A Isocitrate dehydrogenas 19.8 66 0.0022 25.1 2.7 26 56-81 227-252 (349)
7 1cnz_A IPMDH, IMDH, protein (3 19.7 66 0.0023 25.2 2.7 27 56-82 237-263 (363)
8 1w0d_A 3-isopropylmalate dehyd 18.3 61 0.0021 25.2 2.2 26 56-81 222-247 (337)
9 3vmk_A 3-isopropylmalate dehyd 18.2 74 0.0025 25.1 2.7 26 56-81 246-271 (375)
10 2klq_A CBD, P105MCM, DNA repli 18.1 30 0.001 22.5 0.3 10 59-68 102-111 (114)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.88 E-value=2.6e-22 Score=148.48 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=92.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcccccCCcccccccCccceeecchhhHHHHHHHHHHHHhhhhhHHHH
Q psy3545 11 PNPVHNHNLKKILMCSSSNIKYFCNVSVYE-QSFLNIVTYDHLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAY 89 (130)
Q Consensus 11 ~~~~~~~~~g~~lf~ig~~~~~~~~~~L~~-~k~~~~~~~~~~ip~~GlF~~v~~PnY~~Eil~w~g~~l~~~~~~~~~~ 89 (130)
+.+.+..++|++++++|......++.+|++ .+.....++++++.++|+|+++|||||+||++.++|+++++++.....+
T Consensus 72 ~~p~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~ 151 (194)
T 4a2n_B 72 NLPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIF 151 (194)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHH
Confidence 566777899999999999999999999987 4432224578899999999999999999999999999999876543332
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhh---ccCCCcceeecccc
Q psy3545 90 VFYWVISNQFETSLLNHWWYQSKFTR---QYPASRKAFIPYLL 129 (130)
Q Consensus 90 ~~~~v~~~~~~~a~~~~~~y~~~F~~---~Y~~~r~~lIPfI~ 129 (130)
..+.....+..++..||+.++++|++ +|+++++++||+|.
T Consensus 152 ~~~~~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~r~iP~i~ 194 (194)
T 4a2n_B 152 GIVAWAILYFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKVV 194 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHCBSSSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhCCeeCceeC
Confidence 12222223447888899999999875 67779999999984
No 2
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=40.73 E-value=6.8 Score=18.63 Aligned_cols=10 Identities=40% Similarity=0.680 Sum_probs=7.3
Q ss_pred eecchhhHHH
Q psy3545 62 VSSPHLFCEA 71 (130)
Q Consensus 62 v~~PnY~~Ei 71 (130)
|.|||+..|+
T Consensus 1 vqcphfcyel 10 (26)
T 1rpq_W 1 VQCPHFCYEL 10 (26)
T ss_dssp CCCCTHHHHS
T ss_pred CCCCeeeeec
Confidence 5788887763
No 3
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=21.06 E-value=79 Score=15.17 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHHhhhhccC
Q psy3545 100 ETSLLNHWWYQSKFTRQYP 118 (130)
Q Consensus 100 ~~a~~~~~~y~~~F~~~Y~ 118 (130)
.|..++.+...++|-+.|+
T Consensus 8 ~wiAqELRRIGDeFN~~y~ 26 (27)
T 3kj0_B 8 IWYAQELRRIGDEFNAYYA 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhhcc
Confidence 4556677777888875664
No 4
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=20.29 E-value=63 Score=25.06 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=23.5
Q ss_pred cCccceeecchhhHHHHHHHHHHHHhh
Q psy3545 56 GGLFNFVSSPHLFCEALIYLSLYLILY 82 (130)
Q Consensus 56 ~GlF~~v~~PnY~~Eil~w~g~~l~~~ 82 (130)
-+-|+-+-+||++|.|+.-++-.+..+
T Consensus 210 P~~FDVivt~NlfGDIlSD~aa~l~Gs 236 (336)
T 1wpw_A 210 PQMFDVIVTENVYGDILSDEASQIAGS 236 (336)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHHHHTC
T ss_pred cccceEEEEcCcchHHHHHHHHHhcCC
Confidence 467899999999999999999888743
No 5
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=20.17 E-value=87 Score=14.92 Aligned_cols=20 Identities=10% Similarity=-0.035 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHHhhhhccCC
Q psy3545 100 ETSLLNHWWYQSKFTRQYPA 119 (130)
Q Consensus 100 ~~a~~~~~~y~~~F~~~Y~~ 119 (130)
.|..++.+...++|-+-|++
T Consensus 6 ~~iAqELRRIGDeFN~~y~r 25 (26)
T 2wh6_B 6 IWIAQELRRIGDEFNAYYAR 25 (26)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHhHHHhhhccC
Confidence 45667778888888755654
No 6
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=19.81 E-value=66 Score=25.13 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.2
Q ss_pred cCccceeecchhhHHHHHHHHHHHHh
Q psy3545 56 GGLFNFVSSPHLFCEALIYLSLYLIL 81 (130)
Q Consensus 56 ~GlF~~v~~PnY~~Eil~w~g~~l~~ 81 (130)
-+-|+-+-+||++|+|+.-++=.+..
T Consensus 227 P~~FDVivt~NlfGDIlSD~aa~l~G 252 (349)
T 3blx_A 227 PHQFDVLVTPSMYGTILGNIGAALIG 252 (349)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHHHHT
T ss_pred cccccEEEECCcchHHHHHHHHhhcC
Confidence 46789999999999999999988864
No 7
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=19.67 E-value=66 Score=25.23 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=23.7
Q ss_pred cCccceeecchhhHHHHHHHHHHHHhh
Q psy3545 56 GGLFNFVSSPHLFCEALIYLSLYLILY 82 (130)
Q Consensus 56 ~GlF~~v~~PnY~~Eil~w~g~~l~~~ 82 (130)
-+-|+-+-+||++|.|+.-++=+++.+
T Consensus 237 P~~FDVivt~NlfGDIlSD~aa~l~Gs 263 (363)
T 1cnz_A 237 PSQFDVLLCSNLFGDILSDECAMITGS 263 (363)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHHHHTC
T ss_pred cccceEEEECCcchHHHHHHHHHhcCC
Confidence 467899999999999999999888743
No 8
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=18.25 E-value=61 Score=25.16 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.9
Q ss_pred cCccceeecchhhHHHHHHHHHHHHh
Q psy3545 56 GGLFNFVSSPHLFCEALIYLSLYLIL 81 (130)
Q Consensus 56 ~GlF~~v~~PnY~~Eil~w~g~~l~~ 81 (130)
-+-|+-+-+||++|.|+.-++=.++.
T Consensus 222 P~~FDVivt~NlfGDIlSD~aa~l~G 247 (337)
T 1w0d_A 222 PGRFDVIVTDNLFGDIITDLAAAVCG 247 (337)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHHHTT
T ss_pred cccccEEEECcchhHHHHHHHhhhcC
Confidence 46789999999999999999988864
No 9
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=18.25 E-value=74 Score=25.10 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=22.9
Q ss_pred cCccceeecchhhHHHHHHHHHHHHh
Q psy3545 56 GGLFNFVSSPHLFCEALIYLSLYLIL 81 (130)
Q Consensus 56 ~GlF~~v~~PnY~~Eil~w~g~~l~~ 81 (130)
-.-|+-+-+||++|+|+.-++=+++.
T Consensus 246 P~~FDViVt~NlfGDILSD~aa~l~G 271 (375)
T 3vmk_A 246 PNEFDVMLCSNLFGDIVSDEIAMLTG 271 (375)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHHHHT
T ss_pred cccCcEEEECchhHHHHHHHHHHhcC
Confidence 45688999999999999999988864
No 10
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=18.10 E-value=30 Score=22.52 Aligned_cols=10 Identities=20% Similarity=0.364 Sum_probs=8.3
Q ss_pred cceeecchhh
Q psy3545 59 FNFVSSPHLF 68 (130)
Q Consensus 59 F~~v~~PnY~ 68 (130)
--++-||||.
T Consensus 102 ~~lvVHPNy~ 111 (114)
T 2klq_A 102 PYLVVNPNYL 111 (114)
T ss_dssp CBCEECSCCC
T ss_pred eEEEECCCCC
Confidence 4699999995
Done!