Query psy3545
Match_columns 130
No_of_seqs 107 out of 1032
Neff 7.3
Searched_HMMs 13730
Date Fri Aug 16 19:24:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3545.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3545hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e7la1 a.140.4.1 (A:104-157) 21.6 24 0.0017 18.7 1.8 13 64-76 2-14 (54)
2 d1t0la_ c.77.1.1 (A:) NADP-dep 19.2 30 0.0022 25.6 2.6 24 59-82 264-287 (414)
3 d1cnza_ c.77.1.1 (A:) 3-isopro 15.4 45 0.0033 24.0 2.7 27 56-82 237-263 (363)
4 d1a05a_ c.77.1.1 (A:) 3-isopro 14.8 30 0.0022 25.0 1.5 26 56-81 232-257 (357)
5 d1v53a1 c.77.1.1 (A:1-356) 3-i 12.0 52 0.0038 23.5 2.1 26 56-81 232-257 (356)
6 d1wpwa_ c.77.1.1 (A:) 3-isopro 12.0 65 0.0048 22.9 2.7 26 57-82 211-236 (336)
7 d1pb1a_ c.77.1.1 (A:) Isocitra 11.4 56 0.0041 24.1 2.2 27 55-81 292-318 (416)
8 d1hqsa_ c.77.1.1 (A:) Isocitra 11.4 55 0.004 24.2 2.2 27 56-82 297-323 (423)
9 d1h3ga2 b.71.1.1 (A:518-600) C 10.0 39 0.0028 19.2 0.6 15 50-64 3-17 (83)
10 d2axti1 f.23.37.1 (I:1-35) Pho 9.5 1.1E+02 0.008 14.4 2.1 11 19-29 14-24 (35)
No 1
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=21.59 E-value=24 Score=18.75 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=9.8
Q ss_pred cchhhHHHHHHHH
Q psy3545 64 SPHLFCEALIYLS 76 (130)
Q Consensus 64 ~PnY~~Eil~w~g 76 (130)
||||.++..=+.+
T Consensus 2 Hp~~~~D~~K~FS 14 (54)
T d1e7la1 2 HPNFVGDKSKEFS 14 (54)
T ss_dssp CTHHHHHHHHHHH
T ss_pred CcchhhHHHHHHH
Confidence 8888888776654
No 2
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.18 E-value=30 Score=25.56 Aligned_cols=24 Identities=0% Similarity=-0.488 Sum_probs=21.7
Q ss_pred cceeecchhhHHHHHHHHHHHHhh
Q psy3545 59 FNFVSSPHLFCEALIYLSLYLILY 82 (130)
Q Consensus 59 F~~v~~PnY~~Eil~w~g~~l~~~ 82 (130)
|..+-|||++|.|+.-++=++..+
T Consensus 264 fdVivt~NLfGDILSDl~a~l~Gg 287 (414)
T d1t0la_ 264 GFIWACKNYDGDVQSDSVAQGYGS 287 (414)
T ss_dssp CEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEcCcccchhhhhhhhhcCC
Confidence 789999999999999999998754
No 3
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]}
Probab=15.36 E-value=45 Score=24.04 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=23.9
Q ss_pred cCccceeecchhhHHHHHHHHHHHHhh
Q psy3545 56 GGLFNFVSSPHLFCEALIYLSLYLILY 82 (130)
Q Consensus 56 ~GlF~~v~~PnY~~Eil~w~g~~l~~~ 82 (130)
-.-|+-+-+||++|.|+.-++-.++.+
T Consensus 237 P~~fdViv~~Nl~GDIlSDl~a~l~Gg 263 (363)
T d1cnza_ 237 PSQFDVLLCSNLFGDILSDECAMITGS 263 (363)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHHHHTC
T ss_pred cCCCceeeehhHHHHhHHHHHHHHhcc
Confidence 567889999999999999999999754
No 4
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=14.82 E-value=30 Score=25.02 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.9
Q ss_pred cCccceeecchhhHHHHHHHHHHHHh
Q psy3545 56 GGLFNFVSSPHLFCEALIYLSLYLIL 81 (130)
Q Consensus 56 ~GlF~~v~~PnY~~Eil~w~g~~l~~ 81 (130)
-+-|+.+-+||++|.|+.-++-.++.
T Consensus 232 P~~fdViv~~Nl~GDIlSDl~a~l~G 257 (357)
T d1a05a_ 232 PAQFDVLLTGNMFGDILSDEASQLTG 257 (357)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHHTTS
T ss_pred cccccEEechHHHHHHHHHHHHHHhc
Confidence 46699999999999999999988764
No 5
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]}
Probab=12.01 E-value=52 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.6
Q ss_pred cCccceeecchhhHHHHHHHHHHHHh
Q psy3545 56 GGLFNFVSSPHLFCEALIYLSLYLIL 81 (130)
Q Consensus 56 ~GlF~~v~~PnY~~Eil~w~g~~l~~ 81 (130)
-+-|+.+-|||++|.|+.-++-.++.
T Consensus 232 P~~fdViv~~Nl~GDIlSDl~a~l~G 257 (356)
T d1v53a1 232 PGQFDVIVTENMFGDILSDEASVITG 257 (356)
T ss_dssp GGGCSEEEECHHHHHHHHHHHTTTTS
T ss_pred ccccceeechHHHHHHHHHHHHHHhc
Confidence 56699999999999999998888754
No 6
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]}
Probab=11.96 E-value=65 Score=22.89 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=22.4
Q ss_pred CccceeecchhhHHHHHHHHHHHHhh
Q psy3545 57 GLFNFVSSPHLFCEALIYLSLYLILY 82 (130)
Q Consensus 57 GlF~~v~~PnY~~Eil~w~g~~l~~~ 82 (130)
.-|+-+-+||++|.|+.-++-.+..+
T Consensus 211 ~~fdViv~~Nl~GDIlSDl~a~l~G~ 236 (336)
T d1wpwa_ 211 QMFDVIVTENVYGDILSDEASQIAGS 236 (336)
T ss_dssp GGCSEEEECHHHHHHHHHHHHHHHTC
T ss_pred ccceEEEehhHHHHhhhHHHHHhhCC
Confidence 45889999999999999999888653
No 7
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]}
Probab=11.41 E-value=56 Score=24.06 Aligned_cols=27 Identities=4% Similarity=-0.066 Sum_probs=22.9
Q ss_pred ccCccceeecchhhHHHHHHHHHHHHh
Q psy3545 55 TGGLFNFVSSPHLFCEALIYLSLYLIL 81 (130)
Q Consensus 55 ~~GlF~~v~~PnY~~Eil~w~g~~l~~ 81 (130)
+-.-|.-+-++|+||.|+.-++=.++.
T Consensus 292 ~P~~fdViv~~NlfGDIlSDlaa~l~G 318 (416)
T d1pb1a_ 292 RPAEYDVIACMNLNGDYISDALAAQVG 318 (416)
T ss_dssp CGGGCCEEEECHHHHHHHHHHHHHHTT
T ss_pred ccccCCEEeechHHHHHHHHHHHHhhc
Confidence 356688899999999999999888764
No 8
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]}
Probab=11.41 E-value=55 Score=24.17 Aligned_cols=27 Identities=11% Similarity=-0.070 Sum_probs=22.9
Q ss_pred cCccceeecchhhHHHHHHHHHHHHhh
Q psy3545 56 GGLFNFVSSPHLFCEALIYLSLYLILY 82 (130)
Q Consensus 56 ~GlF~~v~~PnY~~Eil~w~g~~l~~~ 82 (130)
-.-|+-+-+||.+|.|+.-++-.++.+
T Consensus 297 P~~fDVIvt~NlfGDILSDlaa~l~Gg 323 (423)
T d1hqsa_ 297 PNEFDVVATMNLNGDYISDALAAQVGG 323 (423)
T ss_dssp GGGCSEEEECHHHHHHHHHHHHHHTTC
T ss_pred ccCCCEEEeccchhhhHhHHHHHhcCC
Confidence 566789999999999999999887643
No 9
>d1h3ga2 b.71.1.1 (A:518-600) Cyclomaltodextrinase {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=9.95 E-value=39 Score=19.25 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=12.1
Q ss_pred cccccccCccceeec
Q psy3545 50 DHLLPTGGLFNFVSS 64 (130)
Q Consensus 50 ~~~ip~~GlF~~v~~ 64 (130)
.|-.|..|.|-|.|+
T Consensus 3 ~Hf~P~~gvYvyfR~ 17 (83)
T d1h3ga2 3 MHFGPEENTWVYFRY 17 (83)
T ss_dssp EECCCBTTEEEEEEE
T ss_pred eeeccCCCEEEEEEE
Confidence 466789999999885
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.48 E-value=1.1e+02 Score=14.41 Aligned_cols=11 Identities=9% Similarity=-0.082 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q psy3545 19 LKKILMCSSSN 29 (130)
Q Consensus 19 ~g~~lf~ig~~ 29 (130)
.-+.+|++|++
T Consensus 14 fFv~lFiFGFL 24 (35)
T d2axti1 14 FFVLLFVFGFL 24 (35)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 34455555554
Done!