RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3545
(130 letters)
>gnl|CDD|217095 pfam02544, Steroid_dh, 3-oxo-5-alpha-steroid 4-dehydrogenase. This
family consists of 3-oxo-5-alpha-steroid
4-dehydrogenases, EC:1.3.99.5 Also known as Steroid
5-alpha-reductase, the reaction catalyzed by this enzyme
is: 3-oxo-5-alpha-steroid + acceptor <=>
3-oxo-delta(4)-steroid + reduced acceptor. The Steroid
5-alpha-reductase enzyme is responsible for the
formation of dihydrotestosterone, this hormone promotes
the differentiation of male external genitalia and the
prostate during fetal development. In humans mutations
in this enzyme can cause a form of male
pseudohermaphorditism in which the external genitalia
and prostate fail to develop normally. A related enzyme
is also found in plants is DET2, a steroid reductase
from Arabidopsis. Mutations in this enzyme cause defects
in light-regulated development.
Length = 150
Score = 60.9 bits (148), Expect = 8e-13
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 53 LPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYWVISNQFETSLLNHWWYQSK 112
+P GGLF VS P+ F E + ++ L ++ A+ F+ + N + +H WY K
Sbjct: 76 IPRGGLFELVSCPNYFGEIMEWIGYALATWSLPALAFAFF-TVCNLTPRAKAHHKWYLKK 134
Query: 113 FTRQYPASRKAFIPYLL 129
F +YP SRKA IP++
Sbjct: 135 F-EKYPKSRKALIPFVF 150
>gnl|CDD|215610 PLN03164, PLN03164, 3-oxo-5-alpha-steroid 4-dehydrogenase,
C-terminal domain containing protein; Provisional.
Length = 323
Score = 52.5 bits (126), Expect = 5e-09
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 51 HLLPTGGLFNFVSSPHLFCEALIYLSLYLILYNNN-TFAYVFYWVISNQFETSLLNHWWY 109
+++P G F VS PH E +IY L + + T +F +V++N + H WY
Sbjct: 245 YVIPYGDWFEMVSCPHYLAEIVIYAGLLIASGGTDLTIWLLFGFVVANLTFAAAETHRWY 304
Query: 110 QSKFTRQYPASRKAFIPYL 128
KF YP +R A IP++
Sbjct: 305 LQKF-ENYPRNRYAIIPFV 322
>gnl|CDD|178015 PLN02392, PLN02392, probable steroid reductase DET2.
Length = 260
Score = 51.4 bits (123), Expect = 1e-08
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 53 LPTGGLFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYWVISNQFETSLLNHWWYQSK 112
+P GG F VS P+ F E + +L ++ ++ F + Y SN + NH WY K
Sbjct: 185 VPRGGWFELVSCPNYFGEIVEWLGWAVMTWSWAGFGFFLY-TCSNLVPRACANHKWYLEK 243
Query: 113 FTRQYPASRKAFIPYL 128
F YP RKA IP+L
Sbjct: 244 FGEDYPKGRKAVIPFL 259
>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a
Type 1 glutamine amidotransferase (GATase1)-like domain.
A subgroup of AraC transcriptional regulators having a
Type 1 glutamine amidotransferase (GATase1)-like domain.
AraC regulators are defined by a AraC-type
helix-turn-helix DNA binding domain at their C-terminal.
AraC family transcriptional regulators are widespread
among bacteria and are involved in regulating diverse
and important biological functions, including carbon
metabolism, stress responses and virulence in different
microorganisms. The catalytic triad typical of GATase1
domains is not conserved in this GATase1-like domain.
However, in common with typical GATase1domains a
reactive cys residue is found in the sharp turn between
a beta strand and an alpha helix termed the nucleophile
elbow.
Length = 195
Score = 34.5 bits (80), Expect = 0.007
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 6/26 (23%)
Query: 100 ETSLLN------HWWYQSKFTRQYPA 119
E LL+ HWW +F R++P
Sbjct: 119 EAGLLDGRRATTHWWLAPQFRRRFPK 144
>gnl|CDD|223237 COG0159, TrpA, Tryptophan synthase alpha chain [Amino acid
transport and metabolism].
Length = 265
Score = 28.0 bits (63), Expect = 1.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 109 YQSKFTRQYPASRKAFIPYL 128
KF + +R A IPY+
Sbjct: 4 LDQKFAQLKAENRGALIPYV 23
>gnl|CDD|212127 cd10816, GH57N_BE_TK1436_like, N-terminal catalytic domain of Gh57
branching enzyme TK 1436 and similar proteins. The
subfamily is represented by a novel branching-enzyme
TK1436 of hyperthermophilic archaeon Thermococcus
kodakaraensis KOD1. Branching enzymes (BEs, EC 2.4.1.18)
play a key role in synthesis of alpha-glucans and they
generally are classified into glycoside hydrolase family
13 (GH13). However, TK1436 belongs to the GH57 family.
It functions as a monomer and possesses BE activity.
TK1436 is composed of a distorted N-terminal
(beta/alpha)7-barrel domain and a C-terminal five
alpha-helical domain, both of which participate in the
formation of the active-site cleft.
Length = 423
Score = 26.7 bits (59), Expect = 4.3
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 94 VISNQFETSLLNHWWYQ 110
+I ++T L HWW++
Sbjct: 353 IICAPYDTELFGHWWFE 369
>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase
domain and an AraC-type DNA-binding HTH domain
[Transcription].
Length = 328
Score = 26.5 bits (59), Expect = 4.6
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 100 ETSLLN------HWWYQSKFTRQYPASR 121
E LL+ HW + F ++P R
Sbjct: 123 EAGLLDGRRATTHWEHAEDFQERFPDVR 150
>gnl|CDD|129954 TIGR00876, tal_mycobact, transaldolase, mycobacterial type. This
model describes one of three related but easily
separable famiiles of known and putative
transaldolases. This family and the family typified by
E. coli TalA and TalB both contain experimentally
verified examples [Energy metabolism, Pentose phosphate
pathway].
Length = 350
Score = 26.6 bits (58), Expect = 4.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 40 EQSFLNIVTYDHLLPTGGLFNFVSSPHLFCEAL 72
E+ FL + L+ G + S+P +FCEA+
Sbjct: 11 ERDFLENGDFLELIDKGAICGATSNPSIFCEAI 43
>gnl|CDD|240297 PTZ00159, PTZ00159, 60S ribosomal protein L32; Provisional.
Length = 133
Score = 26.1 bits (58), Expect = 4.8
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 51 HLLPTGGLFNF-VSSPHLFCEALIYLSLYLILYNNNTFAYV 90
+LLP+G + F V + L ++L +N +A
Sbjct: 66 YLLPSG-FYKFPVRNVK---------DLEMLLMHNRKYAAE 96
>gnl|CDD|225821 COG3283, TyrR, Transcriptional regulator of aromatic amino acids
metabolism [Transcription / Amino acid transport and
metabolism].
Length = 511
Score = 26.6 bits (59), Expect = 4.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
Query: 95 ISNQFETSLLNHWWYQSKFTRQYPASRK 122
I ++FE S+L ++ R YP++RK
Sbjct: 465 IVSRFERSVL------TRLYRSYPSTRK 486
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 26.4 bits (59), Expect = 5.4
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 15 HNHNLKKILMCSSSNIKYFCNVSVYEQSFLNIVTYDHLLPTGGLF----------NFVSS 64
N + +L+ SSS+ + + + NI + L+P NF SS
Sbjct: 925 RNKESQSLLILSSSDCFRIGPFNGKKSKYHNIKESNPLIPIRNSLGPLGTVLQIANFSSS 984
Query: 65 PHLFCEALIYLSLYLILYNNNTFAYVFYWVISNQFETSLL 104
HL I ++ YL L N V E +
Sbjct: 985 YHLLTHNQILVTKYLQLDNLKQTFQVKVLKYYLIDENGKI 1024
>gnl|CDD|226275 COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General
function prediction only].
Length = 272
Score = 26.2 bits (58), Expect = 5.9
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 57 GLFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYWVISNQFETSLLNHWWYQSKFTRQ 116
GL+ + P+ F EAL++ YLI + + V S T LL H +
Sbjct: 188 GLWRWTRHPNYFGEALVWWGFYLIAISEWLLLWA---VASPLLMTWLLVHVSGVPPLEEK 244
Query: 117 YPASRKAFIPY 127
SR F Y
Sbjct: 245 MLKSRPGFREY 255
>gnl|CDD|153125 cd02434, Nodulin-21_like_3, Nodulin-21 and CCC1-related protein
family. Nodulin-21_like_3: This is a family of proteins
closely related to nodulin-21, a plant nodule-specific
protein that may be involved in symbiotic nitrogen
fixation. This family is also related to CCC1, a yeast
vacuole transmembrane protein that functions as an iron
and manganese transporter. .
Length = 225
Score = 26.2 bits (58), Expect = 6.1
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 4/106 (3%)
Query: 15 HNHNLKKILMCSSSNIKYFCNVSVYEQSFLNIVTYDHLLPTGGLFNFVSSPHLFCEALIY 74
+++ S K F ++ + E+ L L F+S L +
Sbjct: 96 SEEVADQVVELLSKYRKLFVDIMMTEELGLIPDDELPSPLKTALVTFLS--FLVFGIIPL 153
Query: 75 LSLYLILYNNNTFAY--VFYWVISNQFETSLLNHWWYQSKFTRQYP 118
L L LY + VF I +L ++SK
Sbjct: 154 LPYLLGLYYYSQKEIDSVFALSILIFVAFTLFLLGSFKSKLYNGKW 199
>gnl|CDD|224460 COG1543, COG1543, Uncharacterized conserved protein [Function
unknown].
Length = 504
Score = 26.2 bits (58), Expect = 7.2
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 99 FETSLLNHWWYQ-----SKFTRQYPASRKAFI 125
F+T L HWW++ R S I
Sbjct: 329 FDTELFGHWWFEGPKWLEAVLRALDESGVELI 360
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.137 0.442
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,469,611
Number of extensions: 556240
Number of successful extensions: 647
Number of sequences better than 10.0: 1
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 47
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)