RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3545
         (130 letters)



>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic
           disease virus [TaxId: 11976]}
          Length = 497

 Score = 26.6 bits (58), Expect = 1.1
 Identities = 7/50 (14%), Positives = 16/50 (32%)

Query: 58  LFNFVSSPHLFCEALIYLSLYLILYNNNTFAYVFYWVISNQFETSLLNHW 107
           L +      L    ++ L  + +   +         + S    TS++N  
Sbjct: 266 LADCCEQTELTKSVVLTLKSHPMTILDAMIVQTKRGLPSGMPFTSVINSI 315


>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli
           [TaxId: 562]}
          Length = 282

 Score = 23.6 bits (50), Expect = 9.7
 Identities = 8/39 (20%), Positives = 14/39 (35%)

Query: 91  FYWVISNQFETSLLNHWWYQSKFTRQYPASRKAFIPYLL 129
           F   +S+ +        ++          SRK+ I  LL
Sbjct: 190 FGKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLL 228


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 507,133
Number of extensions: 20863
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 11
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.7 bits)