BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3546
(164 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|73948982|ref|XP_848593.1| PREDICTED: tRNA (cytosine(38)-C(5))-methyltransferase isoform 2
[Canis lupus familiaris]
Length = 391
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 19/143 (13%)
Query: 14 TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVKGFEG 73
GLQ D+ D R +L Y++ +P RL +KL NVKGFE
Sbjct: 85 IGLQGDVTDPRTNSLLYILNILP------RL------------QKLPKYVLLENVKGFEV 126
Query: 74 SRSRDLITSMLTRAGFRFQEFLLSPTQFGT-SLYTEWLRNKKKKRKEKKKKKDKKKKKEE 132
S +RDL+ L GF++QEFLLSPT FG + + K + + + + E
Sbjct: 127 SSTRDLLIQTLENCGFQYQEFLLSPTSFGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEF 186
Query: 133 KKKEKRKEEKKKKEEEKKKKKKK 155
K E EK + E K ++KK
Sbjct: 187 PKTESENPEKNTIDAENKIERKK 209
>gi|301766512|ref|XP_002918675.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase-like [Ailuropoda
melanoleuca]
Length = 391
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 18/90 (20%)
Query: 14 TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVKGFEG 73
GLQ D+ D R +L Y+++ +P RL +KL NVKGFE
Sbjct: 85 IGLQGDVTDPRTNSLLYILDILP------RL------------QKLPKYILLENVKGFEV 126
Query: 74 SRSRDLITSMLTRAGFRFQEFLLSPTQFGT 103
S +RDL+ L GF++QEFLLSPT G
Sbjct: 127 SSARDLLIQTLENCGFQYQEFLLSPTSLGI 156
>gi|281338132|gb|EFB13716.1| hypothetical protein PANDA_007177 [Ailuropoda melanoleuca]
Length = 372
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 18/90 (20%)
Query: 14 TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVKGFEG 73
GLQ D+ D R +L Y+++ +P RL +KL NVKGFE
Sbjct: 66 IGLQGDVTDPRTNSLLYILDILP------RL------------QKLPKYILLENVKGFEV 107
Query: 74 SRSRDLITSMLTRAGFRFQEFLLSPTQFGT 103
S +RDL+ L GF++QEFLLSPT G
Sbjct: 108 SSARDLLIQTLENCGFQYQEFLLSPTSLGI 137
>gi|410963252|ref|XP_003988179.1| PREDICTED: tRNA (cytosine(38)-C(5))-methyltransferase [Felis catus]
Length = 391
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 19/143 (13%)
Query: 14 TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVKGFEG 73
GLQ D+ D R +L ++++ +P RL +KL NVKGFE
Sbjct: 85 IGLQGDVTDPRTNSLLHILDILP------RL------------QKLPKYILLENVKGFEV 126
Query: 74 SRSRDLITSMLTRAGFRFQEFLLSPTQFGT-SLYTEWLRNKKKKRKEKKKKKDKKKKKEE 132
S +RDL+ + GF++QEFLLSPT G + + K + + + + KE
Sbjct: 127 SSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLKEF 186
Query: 133 KKKEKRKEEKKKKEEEKKKKKKK 155
K E EK E K ++KK
Sbjct: 187 PKLESEHPEKNTIVAENKIERKK 209
>gi|345309099|ref|XP_001520279.2| PREDICTED: tRNA (cytosine(38)-C(5))-methyltransferase-like, partial
[Ornithorhynchus anatinus]
Length = 264
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 18/90 (20%)
Query: 14 TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVKGFEG 73
TGL+ D AD R + YL+ +P RL RK NVKGFEG
Sbjct: 27 TGLRGDAADGRTNSFLYLLRILP------RL------------RKPPRYILLENVKGFEG 68
Query: 74 SRSRDLITSMLTRAGFRFQEFLLSPTQFGT 103
S +RDL+ + + GF++QEFLLSPT G
Sbjct: 69 SATRDLLVQTIEKCGFQYQEFLLSPTSLGI 98
>gi|431917686|gb|ELK16951.1| tRNA (cytosine-5-)-methyltransferase [Pteropus alecto]
Length = 391
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 23/106 (21%)
Query: 3 SIDYASNSDPG-----TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKR 57
S D S P GLQ D+ D R + Y+++ +P RL +
Sbjct: 69 SFDMILMSPPCQPFTRIGLQGDVTDPRTNSFIYILDILP------RL------------Q 110
Query: 58 KLSGIFRTPNVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGT 103
KL NVKGFE S +RDL+ + GF++QEFLLSPT G
Sbjct: 111 KLPKFILLENVKGFEISSTRDLLIQTIESCGFQYQEFLLSPTSLGI 156
>gi|395827473|ref|XP_003786926.1| PREDICTED: LOW QUALITY PROTEIN: tRNA
(cytosine(38)-C(5))-methyltransferase [Otolemur
garnettii]
Length = 399
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 48/106 (45%), Gaps = 23/106 (21%)
Query: 3 SIDYASNSDPG-----TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKR 57
S D S P GLQ D+ D R + Y ++ +P RL R
Sbjct: 69 SCDMILMSPPCQPFTRIGLQGDMTDPRTNSFLYFLDILP------RL------------R 110
Query: 58 KLSGIFRTPNVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGT 103
KL NVKGFE S +RDL+ + GF++QEFLLSPT G
Sbjct: 111 KLPKYILLENVKGFEVSSTRDLLIQTMENCGFQYQEFLLSPTSLGI 156
>gi|242253856|ref|NP_001156357.1| tRNA (cytosine-5-)-methyltransferase [Sus scrofa]
gi|226222432|gb|ACO38647.1| DNA methyltransferase 2 [Sus scrofa]
Length = 408
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 14 TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVKGFEG 73
GLQ D+ D R + Y+++ +P RL +KL NVKGFE
Sbjct: 85 IGLQGDVTDPRTNSFLYILDILP------RL------------QKLPKYILLENVKGFEV 126
Query: 74 SRSRDLITSMLTRAGFRFQEFLLSPTQFGT 103
S +RDL+ + GF++QEFLLSPT G
Sbjct: 127 SSTRDLLIQTIENCGFQYQEFLLSPTSLGI 156
>gi|426240827|ref|XP_004014295.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase-like [Ovis aries]
Length = 386
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 14 TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVKGFEG 73
GLQ D+ D R + Y+++ +P RL +KL NVKGFE
Sbjct: 85 IGLQGDVTDPRTNSFLYILDILP------RL------------QKLPKYILVENVKGFEV 126
Query: 74 SRSRDLITSMLTRAGFRFQEFLLSPTQFGT 103
S +RDL+ + GF++QEFLLSPT G
Sbjct: 127 SSARDLLIQTIENCGFQYQEFLLSPTSLGI 156
>gi|440909178|gb|ELR59115.1| tRNA (cytosine-5-)-methyltransferase [Bos grunniens mutus]
Length = 391
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 14 TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVKGFEG 73
GLQ D+ D R + Y+++ +P RL +KL NVKGFE
Sbjct: 85 IGLQGDVTDPRTNSFLYILDILP------RL------------QKLPKYILLENVKGFEM 126
Query: 74 SRSRDLITSMLTRAGFRFQEFLLSPTQFGT 103
S +RDL+ + GF++QEFLLSPT G
Sbjct: 127 SSTRDLLIQTIENCGFQYQEFLLSPTSLGI 156
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.128 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,760,834,461
Number of Sequences: 23463169
Number of extensions: 138544895
Number of successful extensions: 10305908
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 60442
Number of HSP's successfully gapped in prelim test: 8431
Number of HSP's that attempted gapping in prelim test: 6414251
Number of HSP's gapped (non-prelim): 2278539
length of query: 164
length of database: 8,064,228,071
effective HSP length: 125
effective length of query: 39
effective length of database: 9,426,299,242
effective search space: 367625670438
effective search space used: 367625670438
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 71 (32.0 bits)