BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3546
         (164 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7YS61|TRDMT_BOVIN tRNA (cytosine-5-)-methyltransferase OS=Bos taurus GN=TRDMT1 PE=2
           SV=1
          Length = 391

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 18/90 (20%)

Query: 14  TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVKGFEG 73
            GLQ D+ D R  +  ++++ +P      RL            +KL       NVKGFE 
Sbjct: 85  IGLQGDVTDPRTNSFLHILDILP------RL------------QKLPKYILLENVKGFEM 126

Query: 74  SRSRDLITSMLTRAGFRFQEFLLSPTQFGT 103
           S +RDL+   +   GF++QEFLLSPT  G 
Sbjct: 127 SSTRDLLIQTIENCGFQYQEFLLSPTSLGI 156


>sp|O55055|TRDMT_MOUSE tRNA (cytosine(38)-C(5))-methyltransferase OS=Mus musculus
           GN=Trdmt1 PE=2 SV=2
          Length = 415

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 18/90 (20%)

Query: 14  TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVKGFEG 73
            GLQ D+ D R T+  Y+++ +P      RL            +KL       NVKGFE 
Sbjct: 85  IGLQGDMTDPRTTSFLYILDILP------RL------------QKLPKYILLENVKGFEV 126

Query: 74  SRSRDLITSMLTRAGFRFQEFLLSPTQFGT 103
           S +R L+   +   GF++QEFLLSP+  G 
Sbjct: 127 SSTRGLLIQTIEACGFQYQEFLLSPSSLGI 156


>sp|O14717|TRDMT_HUMAN tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens
           GN=TRDMT1 PE=1 SV=1
          Length = 391

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 23/106 (21%)

Query: 3   SIDYASNSDPG-----TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKR 57
           S D    S P       G Q D+ D+R  +  ++++ +P      RL            +
Sbjct: 69  SFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILP------RL------------Q 110

Query: 58  KLSGIFRTPNVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGT 103
           KL       NVKGFE S +RDL+   +   GF++QEFLLSPT  G 
Sbjct: 111 KLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGI 156


>sp|Q4G073|TRDMT_RAT tRNA (cytosine(38)-C(5))-methyltransferase OS=Rattus norvegicus
           GN=Trdmt1 PE=2 SV=1
          Length = 391

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 18/90 (20%)

Query: 14  TGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVKGFEG 73
            GLQ D++D R  +  Y+++ +P      RL            +KL       NVKGFE 
Sbjct: 85  IGLQGDMSDRRTNSFLYILDILP------RL------------QKLPKYILLENVKGFEV 126

Query: 74  SRSRDLITSMLTRAGFRFQEFLLSPTQFGT 103
           S +R L+   +   GF++QEFLLSP+  G 
Sbjct: 127 SSTRGLLIQTMEACGFQYQEFLLSPSSLGI 156


>sp|Q6FM98|NST1_CANGA Stress response protein NST1 OS=Candida glabrata (strain ATCC 2001
           / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NST1
           PE=3 SV=1
          Length = 1320

 Score = 33.1 bits (74), Expect = 0.90,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 28/33 (84%)

Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
           KK EE K++K +E ++K EE++K++++++K++K
Sbjct: 714 KKVEEAKRKKDEERRRKLEEQRKREEQQEKQRK 746



 Score = 32.0 bits (71), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 29/33 (87%)

Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
           KK ++ K+K+++++ ++ EE++K+EE+++K++K
Sbjct: 714 KKVEEAKRKKDEERRRKLEEQRKREEQQEKQRK 746


>sp|Q5HZG4|TAF3_MOUSE Transcription initiation factor TFIID subunit 3 OS=Mus musculus
           GN=Taf3 PE=1 SV=2
          Length = 932

 Score = 29.6 bits (65), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
           R+E++K KDKKK +E  K+EK K E+++ +E+ ++ K K    +  L
Sbjct: 612 RREREKHKDKKKDRERSKREKDKRERERLKEKNREDKIKAPPTQLVL 658


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.128    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,299,202
Number of Sequences: 539616
Number of extensions: 3466105
Number of successful extensions: 283637
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4707
Number of HSP's successfully gapped in prelim test: 507
Number of HSP's that attempted gapping in prelim test: 101646
Number of HSP's gapped (non-prelim): 95174
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)