RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3546
(164 letters)
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 53.0 bits (128), Expect = 8e-09
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
LR K K EKK K KK ++ ++K KE++K K +++ + K K++
Sbjct: 376 LRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRR 426
Score = 52.3 bits (126), Expect = 1e-08
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K K+ K K K +KKEK KE+ K K+ + K K++K +
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSG 430
Score = 46.1 bits (110), Expect = 2e-06
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
++KK K KK K+ +K+EK+KEK K +K+ ++ + K++K
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 39.2 bits (92), Expect = 4e-04
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEE 147
+ +KK KEK+K K KK+ ++ K KR++ EE
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 47.2 bits (113), Expect = 8e-07
Identities = 19/69 (27%), Positives = 46/69 (66%)
Query: 93 EFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
EFL + + + +KK+ +EKK+KK K ++K++E+ +E++KK+EE+++++
Sbjct: 400 EFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Query: 153 KKKKKKKKN 161
++ +++K+
Sbjct: 460 EEAEEEKEE 468
Score = 46.8 bits (112), Expect = 9e-07
Identities = 21/54 (38%), Positives = 44/54 (81%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ +KKK+ KKK++++++E++KKE+ KEE++++ EE+K+++++KKKK+ L
Sbjct: 427 KKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQATLF 480
Score = 43.0 bits (102), Expect = 2e-05
Identities = 16/57 (28%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
E+L KK +K KK +K +K+ ++++K K++K ++K+++++++K+KK
Sbjct: 400 EFLTGSKKA-TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 43.8 bits (104), Expect = 1e-05
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
++KK +KK+++ +KK +++E +K ++K + KK K +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPD 450
Score = 43.0 bits (102), Expect = 3e-05
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++KK KK++K EKK EK + EK +++ + KK K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPD 450
Score = 42.2 bits (100), Expect = 4e-05
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ +++K +KK++ +KK E+++ EK +KK + KK K + KK D
Sbjct: 407 SPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 38.0 bits (89), Expect = 0.001
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
LR K++K EKK +K++ +K KKK + +K K + + KK
Sbjct: 414 LRKKQRK-AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 28.4 bits (64), Expect = 1.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 114 KKKRKEKKKKKDKKKKKEEKK--KEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ +E++ + E KK K++RK EKK ++EE + K KK A
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAE----KAAAKKKA 439
Score = 26.8 bits (60), Expect = 6.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K + ++EE + ++KK +K++K +KK +K+ A
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEA 430
Score = 26.4 bits (59), Expect = 8.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 125 DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
DK E +++E E +K +KK++K +KK
Sbjct: 389 DKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKK 424
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 42.2 bits (100), Expect = 3e-05
Identities = 18/52 (34%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRK--EEKKKKEEEKKKKKKKKK 157
+ L+ +++R+E+ ++K ++KKKEE++ + K E+++K EEK++KK+ +K
Sbjct: 271 KILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 42.2 bits (100), Expect = 4e-05
Identities = 19/50 (38%), Positives = 37/50 (74%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K K E++++++ ++KKEEKKKE+R+ + K E+++K ++K++KK A
Sbjct: 271 KILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320
Score = 37.2 bits (87), Expect = 0.002
Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
E +K DK +++EE+K K EE+++ EE ++KK++KKK+++ A
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQ-EEAQEKKEEKKKEEREAK 299
Score = 36.5 bits (85), Expect = 0.003
Identities = 13/50 (26%), Positives = 36/50 (72%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
L + ++ +K ++++++K + ++E+++E ++KKEE+KK++++ K K
Sbjct: 253 LSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 42.3 bits (100), Expect = 3e-05
Identities = 26/51 (50%), Positives = 39/51 (76%), Gaps = 3/51 (5%)
Query: 110 LRNKKKKR-KEKKKK--KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
L+ + KR +E K+K K KKK+EEKK +KRK++KK+K++ KK+KKK +K
Sbjct: 364 LKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 36.9 bits (86), Expect = 0.003
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
KE+ K+ ++ K++ K K+K E+KK ++ KKKKK+KKK KK
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKR 408
Score = 31.5 bits (72), Expect = 0.15
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
E ++ K K +KK+++ K +K+++KKK K KK K+ +KK +K
Sbjct: 373 EEIKEKYPKPPKKKREEKKPQKRKKKKKRK----KKGKKRKKKGRK 414
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 40.1 bits (94), Expect = 2e-04
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ + + +EKK+KK KK+ K+EKK++K K+EK + + KKKKKKKKKK
Sbjct: 144 EKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 40.1 bits (94), Expect = 2e-04
Identities = 27/48 (56%), Positives = 38/48 (79%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+K+ E+++KK+KKKKKE KK++K K++KK+K E K KKKKKKKK
Sbjct: 144 EKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKK 191
Score = 35.1 bits (81), Expect = 0.007
Identities = 18/48 (37%), Positives = 36/48 (75%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+K+ K +K+ + +++E+K+K+K+KE KK+K+E+K KK+K + K +
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 35.1 bits (81), Expect = 0.008
Identities = 19/50 (38%), Positives = 35/50 (70%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+K K +K+ + ++EEKK++K+K+E KK+++EKK KK+K + K +
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKK 185
Score = 34.7 bits (80), Expect = 0.012
Identities = 19/49 (38%), Positives = 36/49 (73%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K +++ + ++++KK+KK++K+ +K K+EKK K+E+ + K KKKKK
Sbjct: 141 AKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Score = 33.9 bits (78), Expect = 0.018
Identities = 20/48 (41%), Positives = 34/48 (70%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ +K+ K +K+ E ++E++KE+KKKKE +K+KK+KK KK+K
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKM 177
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 40.5 bits (95), Expect = 2e-04
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK K+++K + KK +K++KKK+++KE K + E + K KK KK
Sbjct: 54 TKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKT 102
Score = 40.1 bits (94), Expect = 2e-04
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K+ K E KKK +KKKKK+++KKE + E + K + KK KK KKK
Sbjct: 58 KKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPK 110
Score = 39.3 bits (92), Expect = 4e-04
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
N + K+K +KKKK KK+KKE K + + K K ++ KK KKK K K N
Sbjct: 63 NNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPN 112
Score = 39.3 bits (92), Expect = 4e-04
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
NK KK KK+ K + +KK EK+K++KK+K+E K + + K K
Sbjct: 47 NKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTP 96
Score = 39.3 bits (92), Expect = 4e-04
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K KK K + K E KKK ++K++KKK+++E K + + K K
Sbjct: 46 ENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFK 94
Score = 38.9 bits (91), Expect = 6e-04
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
E++ K K++KK++K E KKK E++KKKKK+KK+ K
Sbjct: 40 STFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSE 86
Score = 37.8 bits (88), Expect = 0.001
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+K+KK+ K+ + KK+ +KK+K+K+EKK+ + E + K K KK
Sbjct: 51 TTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKK 98
Score = 37.4 bits (87), Expect = 0.002
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK K++ K + KKK E+KKK+K+++++ K E E K K KK K
Sbjct: 52 TSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSK 100
Score = 37.4 bits (87), Expect = 0.002
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 103 TSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
E N+ KK+ EKKKKK K+KK+ + + E + K K+ +K KKK K K
Sbjct: 55 KKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNE 113
Score = 36.2 bits (84), Expect = 0.004
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
E L ++ + KK KKE+K E +K+ +KKK+++K+KK+ K + +
Sbjct: 36 KEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGE 88
Score = 35.1 bits (81), Expect = 0.012
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ K KK K+ K E KK+ K++KKKKE+++ K + + K
Sbjct: 43 SEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLG 92
Score = 30.1 bits (68), Expect = 0.47
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 103 TSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ N KE +++ K K+ +++ K E KKK +KKKKKKK
Sbjct: 21 LQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKE 79
Score = 28.9 bits (65), Expect = 1.3
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
KKKK+KEKK+ K + + K K K+ ++ KKK + K +
Sbjct: 73 KKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNED 114
Score = 27.0 bits (60), Expect = 4.9
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+K K + K+ +++ + KK KK+ KN
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNN 64
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 39.7 bits (93), Expect = 2e-04
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
Y E + K KK+K KKKK K KK++KK +K +++ +K+ E+K + K +
Sbjct: 78 YEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133
Score = 36.6 bits (85), Expect = 0.002
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K KK E+K+K KKKK +KKK+K K++K K+++K +KK +K+ +
Sbjct: 72 EKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 34.7 bits (80), Expect = 0.009
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KK+ +++K K KKK K++K K+K K++ KK ++ +KK +K+ + K L
Sbjct: 75 KKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLT 126
Score = 34.3 bits (79), Expect = 0.015
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+K+K K KKK KKKK++ K +K ++ K E++ +K+ + K +
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTK 127
Score = 34.3 bits (79), Expect = 0.015
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+K + +KKK K KK K ++KK +K+ ++ +KK+E++ + K + K +
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYS 130
Score = 33.9 bits (78), Expect = 0.018
Identities = 18/51 (35%), Positives = 36/51 (70%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
L + +K K++ ++K K K K++K K+K+ ++K KK+++K K +KK +K+
Sbjct: 67 LAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKE 117
Score = 32.7 bits (75), Expect = 0.041
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+K++ + KKKK KKKK ++K K+ K++ K +++++K+ + K + +
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYS 130
Score = 32.0 bits (73), Expect = 0.089
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K K K+ KK DK +KK+EK+ E + E+ K E + K +K AL
Sbjct: 95 KDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRKYALH 147
Score = 31.6 bits (72), Expect = 0.11
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KKKKK+ ++ E+ KKE +++K K +++K KKKK K K K
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDK 105
Score = 26.2 bits (58), Expect = 8.3
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
KK +K+ K +K +K+ E+K ++ K + + K +K K+
Sbjct: 101 KKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRKYALHKD 149
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 39.3 bits (91), Expect = 5e-04
Identities = 17/56 (30%), Positives = 39/56 (69%)
Query: 101 FGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ T L + L K+++ EK K++ ++K +EE+++EK KE+++++E E++ ++ K
Sbjct: 568 YFTPLASSKLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 33.5 bits (76), Expect = 0.041
Identities = 16/60 (26%), Positives = 39/60 (65%)
Query: 103 TSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
T LY L + K +K ++ + K++ E+K +E+R+ EK+K++E +++++++ ++ A
Sbjct: 565 TDLYFTPLASSKLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKA 624
Score = 29.7 bits (66), Expect = 0.83
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 118 KEKKKKKDKKKKKEE----KKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K + KK KK KEE K KR+ EK + E+ ++ KK K L
Sbjct: 58 KAESTKKPNKKIKEEATSPLKSTKRQREKPASDTEEPERVTAKKSKTQEL 107
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 39.2 bits (92), Expect = 5e-04
Identities = 19/43 (44%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
+K++ ++EK++K+ K++K +K +K +EEKKKKE EK +K K
Sbjct: 549 DKEELQREKEEKEALKEQKRLRKLKK-QEEKKKKELEKLEKAK 590
Score = 37.7 bits (88), Expect = 0.001
Identities = 18/45 (40%), Positives = 33/45 (73%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K +K++ + +K++KE K++KR + KK+EE+KKK+ +K +K K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 36.9 bits (86), Expect = 0.002
Identities = 13/41 (31%), Positives = 30/41 (73%)
Query: 123 KKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K++ +++KEEK+ K ++ +K +++++KKKK+ +K + A
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 36.5 bits (85), Expect = 0.004
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKK 144
E R K++K K++K+ +K KK+E+KK+K E+ +K
Sbjct: 552 ELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 35.8 bits (83), Expect = 0.007
Identities = 14/47 (29%), Positives = 33/47 (70%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K K++ +++K+E++ +++K +K K++E+KKKK+ +K +K +
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIP 592
Score = 33.5 bits (77), Expect = 0.042
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K KE+ +++ ++K+ +++K R K KK+EEKKKK+ +K +K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLR---KLKKQEEKKKKELEKLEK 588
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 39.0 bits (91), Expect = 6e-04
Identities = 21/60 (35%), Positives = 41/60 (68%)
Query: 101 FGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ L+ E K+ +E++++K++KK++EEK +K +E +++E+E+KKKK KK K+
Sbjct: 21 YPIYLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80
Score = 36.7 bits (85), Expect = 0.003
Identities = 17/46 (36%), Positives = 35/46 (76%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
E+++++ ++KK+EE+K ++EE ++EE+++KKKK KK K+ +
Sbjct: 38 EEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTE 83
Score = 33.6 bits (77), Expect = 0.036
Identities = 16/44 (36%), Positives = 33/44 (75%), Gaps = 3/44 (6%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+EK++KK++++K +K++E ++++++EEKKKK KK K+
Sbjct: 42 EEKEEKKEEEEKTTDKEEE---VDEEEEKEEKKKKTKKVKETTT 82
Score = 29.7 bits (67), Expect = 0.79
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
+++K +K+++ D++++KEEKKK+ +K ++ E E K K
Sbjct: 49 EEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 29.0 bits (65), Expect = 1.3
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
++K ++K++++ K+EE +E+ KEEKKKK ++ K+
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 27.8 bits (62), Expect = 3.0
Identities = 11/41 (26%), Positives = 30/41 (73%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
++K+ K+++++K K++E ++E+++E+KKK ++ K+
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 26.7 bits (59), Expect = 6.6
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
E ++KK +E+K +++ EE++KE++K++ KK +E + + K K
Sbjct: 40 EEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 26.7 bits (59), Expect = 6.9
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KE + KK KE K E+ +EEKKK+EE KK+ ++ K K+ L
Sbjct: 331 KEFEGKKLVNVTKEGLKLEESEEEKKKREELKKEFEELCKWMKDILG 377
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 38.7 bits (90), Expect = 6e-04
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K + EKK K++ KK+ EE+ K K E KKK E KKK + + K K
Sbjct: 135 KAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKA 183
Score = 34.8 bits (80), Expect = 0.012
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ ++ K+ ++K+K+ E+ K K+ E K K E + +KK K++ KK A
Sbjct: 103 AAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQA 152
Score = 34.0 bits (78), Expect = 0.023
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK K + KK+ +++ K K + +K+ E KKK E + K K + K K A
Sbjct: 142 KKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKA 191
Score = 34.0 bits (78), Expect = 0.024
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK +KK + + K K E K K K +E K K E K K + K A
Sbjct: 166 KKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEA 215
Score = 34.0 bits (78), Expect = 0.026
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K+ + K+ ++K+K+ EE K ++ E K K E E +KK K++ KK+ +
Sbjct: 104 AKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEE 155
Score = 33.7 bits (77), Expect = 0.028
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ ++++ +++ +K K+ ++ K+ EEK+K+ EE K K+ + K K
Sbjct: 87 EQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAK 135
Score = 33.7 bits (77), Expect = 0.030
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KK + + K K + K K K E+ K K + K K E K + + A +
Sbjct: 173 KKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAE 224
Score = 33.3 bits (76), Expect = 0.038
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ + + K K + KKK + K+K + E K K E K K K ++ K K
Sbjct: 149 KKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAE 199
Score = 33.3 bits (76), Expect = 0.046
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 113 KKKKRKEKKKK--KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+K+ +E K K + K K E + ++K KEE KK+ EE+ K K + KK A
Sbjct: 117 KQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKA 168
Score = 32.9 bits (75), Expect = 0.052
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 112 NKKKKRKEKKKKKD---KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K K+ E K K + +KK KEE KK+ +E K K E KKK + KKK A
Sbjct: 124 AKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEA 177
Score = 32.9 bits (75), Expect = 0.063
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 114 KKKRKEKKKKK---DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+KK KE+ KK+ + K K + K+K E KKK E E K K + K K K
Sbjct: 141 EKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAK 190
Score = 32.5 bits (74), Expect = 0.075
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K K E KKK + KKK E + + + E K K + E+ K K + K K A +
Sbjct: 156 AKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAE 208
Score = 32.1 bits (73), Expect = 0.10
Identities = 14/50 (28%), Positives = 33/50 (66%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+K++ E+ ++K+ +++ +K K+ E+ K+ EEK+K+ ++ K K+ A
Sbjct: 81 EKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAA 130
Score = 31.7 bits (72), Expect = 0.15
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ + K+K+ ++ K K+ E K + E +KK +EE KK+ +++ K K A
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAA 161
Score = 31.3 bits (71), Expect = 0.20
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ +K+ + K K+ + K K E + EK+ +E+ KK+ E++ K K + K
Sbjct: 113 QAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAK 165
Score = 31.3 bits (71), Expect = 0.20
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K + KKK + KKK E + K K + + K K EE K K + K K A
Sbjct: 156 AKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAA 207
Score = 31.0 bits (70), Expect = 0.24
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K K + K K ++ K K E K K E K E + + ++ A
Sbjct: 180 KAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKA 229
Score = 30.2 bits (68), Expect = 0.48
Identities = 11/54 (20%), Positives = 32/54 (59%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+K+R ++ ++ + +++ +K ++ E+ K+ E+K+K+ ++ K K A +
Sbjct: 78 EEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131
Score = 29.8 bits (67), Expect = 0.55
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ ++K+K+ ++ K K+ E K K + + EKK KEE KK+ +++ K K A
Sbjct: 112 KQAEEKQKQAEEAK-AKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAA 162
Score = 29.8 bits (67), Expect = 0.60
Identities = 13/50 (26%), Positives = 31/50 (62%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K +KE++++K +++ EE +K++ E+ ++KE E++ +K K+
Sbjct: 60 KPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQ 109
Score = 29.0 bits (65), Expect = 1.1
Identities = 9/45 (20%), Positives = 29/45 (64%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
++ + EK++ ++ ++KE +++ ++ K+ E+ K+ ++K+K
Sbjct: 75 QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 28.6 bits (64), Expect = 1.5
Identities = 9/48 (18%), Positives = 31/48 (64%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+++K+ E++ ++ +K++ E+ ++K E++ E+ K+ ++ K+ +
Sbjct: 68 ERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAE 115
Score = 27.9 bits (62), Expect = 2.9
Identities = 11/53 (20%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEE----KKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ ++KK +++ ++ +K++ E+ + +++ EK K+ E+ K+ ++K+K
Sbjct: 67 QERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 39.0 bits (90), Expect = 7e-04
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK +E KK + K + E ++ + ++K E +KKK++ KKK A
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
Score = 38.6 bits (89), Expect = 8e-04
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
KK + K + + + E +EK + +KKKEE KKK KKK
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
Score = 38.2 bits (88), Expect = 0.001
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
KK+ E+ KK + K E + E ++K E +KKK++ KKK +A
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
Score = 38.2 bits (88), Expect = 0.001
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KK+ E+ KK D+ KKK E+ K+K KKK EE KK + K + + A D
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357
Score = 37.0 bits (85), Expect = 0.003
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKE-----KRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK +E KK + KKK EE KK+ K+ EE KK E K + + + A
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
Score = 37.0 bits (85), Expect = 0.003
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKE---KRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+ + E+K + +KKK+E KKK K+K E+KKK +E KKK ++ KKK + L
Sbjct: 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL 1410
Score = 37.0 bits (85), Expect = 0.003
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK +E KKK D KKK E+ K K E K + E + + ++K A
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAK-KAAEAAKAEAEAAADEAEAAEEKAEA 1368
Score = 36.7 bits (84), Expect = 0.003
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K E + + +++ + EK+KEE KKK + KKK ++KKK A
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
Score = 36.7 bits (84), Expect = 0.003
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKE---KRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK KKK + KKK EEKKK K+K E+ KK +E KKK ++ KK + A
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462
Score = 36.7 bits (84), Expect = 0.004
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKK----EKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK +E KK + KKK EE KK +K+ EE KKK +E KK + KKK A
Sbjct: 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
Score = 36.3 bits (83), Expect = 0.005
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKK----EKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+KKK + KKK KKK EEKKK +K+ EE KKK +E KK KKK A
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423
Score = 35.9 bits (82), Expect = 0.007
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK KKK ++ KK E K + + + E ++K + +KKK+ A
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
Score = 35.9 bits (82), Expect = 0.007
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKK----EKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK +E KK ++ KKK EE KK +K+ EE KK +E KKK ++ KKK A
Sbjct: 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
Score = 35.5 bits (81), Expect = 0.008
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKE----KRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK +EKKK + KKK EE KK+ K+ KKK +E KKK ++KKK A
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
Score = 35.1 bits (80), Expect = 0.012
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKE----KRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK +E KKK D+ KK KK+ K+K E+KKK +E KKK ++ KK A
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA 1449
Score = 35.1 bits (80), Expect = 0.012
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 115 KKRKEKKKKKDKKKKKEEKKK----EKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK +EKKK + KKK EE KK +K+ EE KKK + KKK ++ KK A
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347
Score = 35.1 bits (80), Expect = 0.013
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKK----EKRKEEKKKKEEEKKKKKKKKK 157
KKK +E KK + KKK EE KK +K+ EE KK +E KKK ++ KK
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
Score = 34.7 bits (79), Expect = 0.015
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKE---KRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK +EKKK + KKK EE KK K+K E+ KK EE KKK ++ KK A
Sbjct: 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
Score = 34.3 bits (78), Expect = 0.021
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
KKK E+KKK ++ KK EE+ K K EE KK EE+KKK ++ KK +++
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686
Score = 34.3 bits (78), Expect = 0.022
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KKK KKK ++ KK E K E + + E+K + +KKK++
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375
Score = 34.3 bits (78), Expect = 0.022
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
E + ++KK+ ++ KKK ++ KK ++ K+K +E KKK + KKK ++ KK
Sbjct: 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
Score = 34.0 bits (77), Expect = 0.027
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKK---EKRKEEKKKKEEEKKKKKKKKK 157
KKK +E KKK D+ KK E KK E +K E+ KK +E KK ++ KK
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
Score = 34.0 bits (77), Expect = 0.027
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKE----KRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KK + KKK ++ KKK + KK+ K+ E K E E + + ++K
Sbjct: 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369
Score = 34.0 bits (77), Expect = 0.029
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KK+ E+ KK D+ KKK E+ K+K E KK E +KK + KK ++ D
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525
Score = 34.0 bits (77), Expect = 0.034
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 116 KRKEKKKKKDKKKKKEEKKKE---KRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K+ E+KKK D+ KK EEKKK K+K E+ KK +E KKK ++ KKK +A
Sbjct: 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA 1334
Score = 34.0 bits (77), Expect = 0.034
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKE----KRKEEKKKKEEEKKKKKKKKK 157
KKK +E KK + KKK EE KK+ K+ E KKK +E KK ++ KK
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Score = 33.6 bits (76), Expect = 0.040
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
NK K +E KK ++ KKK EE KK + E++KK E KK+ ++ KK
Sbjct: 1659 NKIKAAEEAKKAEEDKKKAEEAKKAE--EDEKKAAEALKKEAEEAKK 1703
Score = 33.6 bits (76), Expect = 0.045
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKE----KRKEEKKKKEEEKKKKKKKKKKKKNAL 163
KK ++KKK ++ KK +E++KK K++ E+ KK EE KKK+ ++KKK L
Sbjct: 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
Score = 33.2 bits (75), Expect = 0.057
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
KKK E+KKK ++ KK EE+ K K +E KK+ EE+KKK ++ KK +
Sbjct: 1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
Score = 33.2 bits (75), Expect = 0.057
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 115 KKRKEKKKKKDKKKKKEEKKK--EKRKEEKKKKEEEKKKKKKKKK 157
KK E KKK D+ KK EE KK E +K E+ KK +E KK ++KKK
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547
Score = 33.2 bits (75), Expect = 0.060
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK +E K K ++ KK E+ K+K +E KK +E+EKK + KK+ + A
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
Score = 33.2 bits (75), Expect = 0.061
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKK----EKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK + KKK ++ KK E KKK +K+ + KKK EE KK + K + A
Sbjct: 1301 KKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA 1354
Score = 32.8 bits (74), Expect = 0.068
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
++K + +KKK++ KKK + K K+ EEKKK +E KKK ++ KKK
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAK-KKAEEKKKADEAKKKAEEDKKK 1406
Score = 32.8 bits (74), Expect = 0.077
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKK----EKRKEEKKKKEEEKKKKKKKKKK 158
KKK KKK ++KKK E KKK +K+ +E KK KKK + KKK
Sbjct: 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Score = 32.8 bits (74), Expect = 0.080
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKE---KRKEEKKKKEEEKKKKKKKKKK 158
E + + + ++ + ++K + EKKKE K+ + KKK EEKKK + KKK
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Score = 32.8 bits (74), Expect = 0.082
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKK---EKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+KKK + KK KKK E KKK +K+ +E KKK EE KK + KKK + A
Sbjct: 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
Score = 32.4 bits (73), Expect = 0.096
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKK---EKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK + KKK ++KKK E KKK K+ +E KKK EE KK ++ KKK + A
Sbjct: 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469
Score = 32.4 bits (73), Expect = 0.11
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK +E +KK + KKE ++ +K +E KKK+ EEKKK ++ KK ++
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
Score = 32.0 bits (72), Expect = 0.16
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+KK E KK+ ++ KK E+ K+K EEKKK EE KK +++ K K + A
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEA 1735
Score = 31.6 bits (71), Expect = 0.18
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKK---EKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK + KKK ++ KK E KKK K+ +E KKK EE KKK + KK A
Sbjct: 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
Score = 31.3 bits (70), Expect = 0.21
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+KKK +E KK +++ K K ++ +K +E+KKK EE KK ++ +KK +
Sbjct: 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
Score = 31.3 bits (70), Expect = 0.24
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+KKK E KKK ++ KKK ++ K K KKK +E KKK ++KKK
Sbjct: 1389 EKKKADEAKKKAEEDKKKADELK-KAAAAKKKADEAKKKAEEKKK 1432
Score = 31.3 bits (70), Expect = 0.27
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKK----EKRKEEKKKKEEEKKKKKKKKKKKK 160
++KK + KK+ ++ KK EE KK EK+K E+ KK EE+ K K ++ KK+
Sbjct: 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
Score = 30.9 bits (69), Expect = 0.31
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 116 KRKEKKKKKDKKKKKEEKKK--EKRKEEKKKKEEEKKKKKKKKKKKKN 161
K+ E+ KK D+ KK EEKKK E +K E+ KK EEKKK ++ KK +++
Sbjct: 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED 1575
Score = 30.9 bits (69), Expect = 0.36
Identities = 21/45 (46%), Positives = 34/45 (75%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+KKK +E KK +++ K K E+ K++ +E+KKK EE KK +++KKK
Sbjct: 1714 EKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758
Score = 30.9 bits (69), Expect = 0.37
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK ++ KKK+ ++KKK E+ K+ +E K K EE KK ++ KKK + A
Sbjct: 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
Score = 30.5 bits (68), Expect = 0.45
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+KKK + KK ++D+KK E KKE EE KK EE KKK+ ++KKK
Sbjct: 1673 DKKKAEEAKKAEEDEKKAAEALKKE--AEEAKKAEELKKKEAEEKKK 1717
Score = 30.1 bits (67), Expect = 0.57
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKK---EKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KKK E KK + KKK +E KK K+ +E KK EE KK + KK ++K D
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
Score = 30.1 bits (67), Expect = 0.58
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKK-KEKRKEEKKKKEEEKKKKKKKKK 157
KKK + KK + KKK E KK +E +K ++ KK EE KK + KK
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
Score = 30.1 bits (67), Expect = 0.66
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
Query: 114 KKKRKEKKKKKDKKKKKEE----KKKEKRKEEKKKKEEEKKKKKKKKKKK 159
KKK +E KK ++ +KK E + +E +K E+ KK+E ++KKK ++ KK
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Score = 30.1 bits (67), Expect = 0.67
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK + + K K ++ KK EE +K+K E+ KK EE +KK + KK+
Sbjct: 1653 KKAEEENKIKAAEEAKKAEE---DKKKAEEAKKAEEDEKKAAEALKKE 1697
Score = 30.1 bits (67), Expect = 0.68
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK +E+KKK ++ KKKE ++K+K +E KK +EE K K ++ KK +
Sbjct: 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
Score = 29.7 bits (66), Expect = 0.69
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+ L+ ++K+K + KK ++KKK ++ K+K +E KK E +KK ++ KKK
Sbjct: 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK 1330
Score = 29.7 bits (66), Expect = 0.80
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ KK +E KKK+ ++KKK E+ K+ +E K K EE KK+ ++ KKK + A
Sbjct: 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749
Score = 29.7 bits (66), Expect = 0.82
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 114 KKKRKEKKKKKDKKKKKEEKK-KEKRKEEKKKKEEEKKKKKKKKK 157
KKK E KK ++ KK E KK +E +K ++ KK EEKKK + KK
Sbjct: 1509 KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
Score = 29.7 bits (66), Expect = 0.90
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK +E K K ++ KK+ E+ K+K +E KK +EE+KK KK+++K A
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKA 1770
Score = 29.3 bits (65), Expect = 1.0
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+ ++KK+ ++ KKK ++ KK ++ K K+ EE KK EE KKK ++ KK
Sbjct: 1426 KAEEKKKADEAKKKAEEAKKADEAK-KKAEEAKKAEEAKKKAEEAKK 1471
Score = 29.3 bits (65), Expect = 1.1
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 116 KRKEKKKKKDKKKKKEEKKK--EKRKEEKKKKEEEKKKKKKKKK 157
K+ E+ KK D+ KK EE KK E +K E+KKK +E KK ++ KK
Sbjct: 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK 1559
Score = 29.3 bits (65), Expect = 1.2
Identities = 19/52 (36%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKK--EKRKEEKKKKEEEKKKKKKKKKKK 159
++ ++ ++ ++ KK ++KKK +E KK EK+K ++ KK+ E+ KK + KKK
Sbjct: 1272 IKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
Score = 29.0 bits (64), Expect = 1.4
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKK--EKRKEEKKKKEEEKKKKKKKKK 157
E + ++ K+ ++ KK ++ KK +E KK EK+K ++ KK EE KK ++KKK
Sbjct: 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565
Score = 28.6 bits (63), Expect = 1.7
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 116 KRKEKKKKKDKKKKKEEKKK--EKRKEEKKKKEEEKKKKKKKK 156
K+ E+KKK D+ KK EE KK EK+K E+ KK EE K +K
Sbjct: 1540 KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
Score = 28.6 bits (63), Expect = 1.7
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
KKK+ +EKKK ++ KK +EE K + +E KK +E++KK ++ KK ++
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685
Score = 28.2 bits (62), Expect = 2.3
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEK-RKEEKKKKEEEKKKKKKKK 156
+ KK E KK ++KKK E KK E+ +K E+KKK EE KK ++ K
Sbjct: 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
Score = 28.2 bits (62), Expect = 2.3
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ K + E+ KK +++KKK E+ K+K EEKKK EE KK +++ K K
Sbjct: 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
Score = 27.0 bits (59), Expect = 6.3
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
KK +E KK ++KKK +E KK E+ K +K EE KK ++ + ++ L
Sbjct: 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKL 1600
Score = 26.6 bits (58), Expect = 7.9
Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
KK K +E KK ++ K K EE KK + EEKKK E+ KKK+ ++KKK
Sbjct: 1605 KKMKAEEAKKAEEAKIKAEELKKAE--EEKKKVEQLKKKEAEEKKK 1648
Score = 26.3 bits (57), Expect = 9.8
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKK---EKRKEEKKKKEEEKKKKKKKKKKK 159
NK K + KK+ ++ KKK EE KK EK+K KKEEEKK ++ +K+K+
Sbjct: 1728 NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 38.7 bits (90), Expect = 7e-04
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E L KKKK ++ K+K+ KK K +K+ + + + ++ + KK +KK +K
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRD 70
Score = 38.3 bits (89), Expect = 0.001
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
R KKK+ K K+K+ K K +++ K K + ++ KK +KK +K++ D
Sbjct: 20 RKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVED 73
Score = 35.6 bits (82), Expect = 0.009
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+K+ +++ ++KKKKEEK KEK ++ K ++E K K + ++
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGT 56
Score = 32.2 bits (73), Expect = 0.10
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ + + + K +EE +++K+KEEK K++E KK K +K+ K
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAK 44
Score = 32.2 bits (73), Expect = 0.11
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ +KK EE+ + K+K+E+K KE+E KK K +K+ K
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAK 44
Score = 30.3 bits (68), Expect = 0.53
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
EKK +++ ++++KK+EK KE++ KK + +K+ K K + + A D
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASD 54
Score = 27.6 bits (61), Expect = 3.7
Identities = 12/52 (23%), Positives = 29/52 (55%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K K+++ KK K +K+ K + + ++ + ++ +KK +K+ + +N D
Sbjct: 27 KAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDENPED 78
>gnl|CDD|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases;
Methyl transfer reactions play an important role in many
aspects of biology. Cytosine-specific DNA methylases are
found both in prokaryotes and eukaryotes. DNA
methylation, or the covalent addition of a methyl group
to cytosine within the context of the CpG dinucleotide,
has profound effects on the mammalian genome. These
effects include transcriptional repression via
inhibition of transcription factor binding or the
recruitment of methyl-binding proteins and their
associated chromatin remodeling factors, X chromosome
inactivation, imprinting and the suppression of
parasitic DNA sequences. DNA methylation is also
essential for proper embryonic development and is an
important player in both DNA repair and genome
stability.
Length = 275
Score = 38.4 bits (90), Expect = 7e-04
Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 23/93 (24%)
Query: 15 GLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVKGFEG- 73
G +K D R T +I + P F NVKG
Sbjct: 79 GKRKGFEDTRGTLFFEIIRILKEKKPK--------------------YFLLENVKGLLTH 118
Query: 74 --SRSRDLITSMLTRAGFRFQEFLLSPTQFGTS 104
+ +I + L G+ LL+ + +G
Sbjct: 119 DNGNTLKVILNTLEELGYNVYWKLLNASDYGVP 151
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 38.3 bits (89), Expect = 8e-04
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 95 LLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKE-------EKKKKEE 147
+++P + L+ E KK + EK + K +KK+ +K++ +E E+
Sbjct: 316 IITPWRAPE-LHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMA 374
Query: 148 EKKKKKKKKKKKKNALD 164
+ ++ K KK L
Sbjct: 375 RARARRAAVKAKKKGLI 391
Score = 27.1 bits (60), Expect = 5.3
Identities = 7/43 (16%), Positives = 20/43 (46%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+KR+ +++ +++ ++E R ++ + KKK
Sbjct: 351 AQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDA 393
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 36.9 bits (86), Expect = 0.001
Identities = 15/51 (29%), Positives = 35/51 (68%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
KKK+++ KK++ + + E+ KE+ ++EK+ ++ +KK K+++K+K+
Sbjct: 80 EKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 34.9 bits (81), Expect = 0.004
Identities = 15/50 (30%), Positives = 33/50 (66%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ +++++KKK+K KK+ + +R+ K++ E+EK+ +K ++KK K
Sbjct: 73 KELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFK 122
Score = 28.0 bits (63), Expect = 1.3
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K KE ++K+KKKK++ K++R + ++E K++ +K+K+ +KN
Sbjct: 70 KVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKN 116
Score = 26.9 bits (60), Expect = 3.3
Identities = 13/48 (27%), Positives = 31/48 (64%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K +K ++K+K KK+K+ KK+ ++++ +E+ +K+K+ +K +
Sbjct: 70 KVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNR 117
Score = 26.1 bits (58), Expect = 6.1
Identities = 13/35 (37%), Positives = 27/35 (77%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKK 144
LR ++++ KE+ +K+ + +K EKK ++R++EK+K
Sbjct: 96 LRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 36.7 bits (86), Expect = 0.001
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
K++ K +K +KK EK K K +++K KKEE K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 35.6 bits (83), Expect = 0.004
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 134 KKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
KKE + EK +K+ EK K K +KKK K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKK 92
Score = 35.2 bits (82), Expect = 0.005
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 125 DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
DKK+ K +K EK+ E+ K K E+KK KK++ K +
Sbjct: 64 DKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 34.4 bits (80), Expect = 0.009
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKK 144
K ++ +KK +K K K EKKK K++E K +
Sbjct: 68 LKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 33.7 bits (78), Expect = 0.020
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 130 KEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+E K ++ E+K +K + K +KKK KK++
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEP 95
Score = 33.3 bits (77), Expect = 0.022
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKK 145
K+ K EK +KK +K K + +KK+ +KEE K +
Sbjct: 66 KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 32.1 bits (74), Expect = 0.053
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 103 TSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
T L E+ K+ KK+ K ++ +KK ++ + K +K++ KK++ K +
Sbjct: 45 TDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 31.7 bits (73), Expect = 0.082
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 129 KKEEKK--KEKRKEEKKKKEEEKKKKKKKKKKKK 160
KKE K K ++K EK K + EKKK KK++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 29.4 bits (67), Expect = 0.45
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 113 KKKKRKEKKKKK-----DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+KK+ +K + + ++ K +E + ++K+ K EK +KK +K K K
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAE 86
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 37.3 bits (87), Expect = 0.001
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 14/55 (25%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
Y EW KD K +E +E K+EE + +KK+ KKKK
Sbjct: 156 YAEW--------------KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 30.0 bits (68), Expect = 0.43
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 132 EKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E K K EE +E E K+++ +
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGE 188
Score = 29.6 bits (67), Expect = 0.52
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 130 KEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ K E+ E+ + K+++ + +KK +
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 37.6 bits (87), Expect = 0.002
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K+K++ +++KKK K+K KEE K K KEE K+K K+K+K+K+KK + D
Sbjct: 107 EKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Score = 36.4 bits (84), Expect = 0.004
Identities = 20/50 (40%), Positives = 37/50 (74%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ + K+ K+KKK+K K++ K+ K KE+ KE++ KE+EK+K+KK ++ +
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Score = 34.9 bits (80), Expect = 0.013
Identities = 19/49 (38%), Positives = 37/49 (75%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
N+ K +EK+K++ K++KK++K+K K + + +K +EE K+K+ K+K+K
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148
Score = 34.9 bits (80), Expect = 0.014
Identities = 19/48 (39%), Positives = 35/48 (72%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K K + + K+++K+KE+ K+EK+K+++K KEE K +K K++ K+K
Sbjct: 93 KPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 34.5 bits (79), Expect = 0.018
Identities = 15/51 (29%), Positives = 36/51 (70%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ ++E+K+K+ K++K++KK++ ++E K +K +E+ K+K+ K+K+
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKE 149
Score = 34.5 bits (79), Expect = 0.020
Identities = 17/48 (35%), Positives = 34/48 (70%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K K KE K + K+++KE+++ ++ K++KK+K +E+ K +K K++ K
Sbjct: 91 KTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK 138
Score = 34.1 bits (78), Expect = 0.025
Identities = 20/47 (42%), Positives = 37/47 (78%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+KKK+KEK K++ K +K +E+ KEKR ++K+KE+EKK ++ + +++
Sbjct: 116 EKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162
Score = 33.7 bits (77), Expect = 0.029
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K K K+ K++ K+EEK+KE+ KEEKKKK+E+ K++ K +K K+ A +
Sbjct: 88 PAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKE 139
Score = 33.7 bits (77), Expect = 0.030
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ +K K K KE K + ++EEK+K++ +++KKKKK+K K+
Sbjct: 79 RVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKE 126
Score = 33.7 bits (77), Expect = 0.030
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
R K++ KEK+ K+K+K+KE+K +E R E++KK E + K + KK K
Sbjct: 127 EPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPK 180
Score = 32.6 bits (74), Expect = 0.083
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
R K+K KEK+KK ++ + +EE+KK +R K + ++ KKK KKK+
Sbjct: 141 RPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEP 190
Score = 32.6 bits (74), Expect = 0.090
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+ ++ K K K +E K E KEE+K+KE+ K++KKKKK+K K
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPK 125
Score = 31.8 bits (72), Expect = 0.14
Identities = 16/49 (32%), Positives = 37/49 (75%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
KKKK+++ K++ +K KEE K+++ +EK+K++E+K ++ + ++++K
Sbjct: 117 KKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165
Score = 31.8 bits (72), Expect = 0.15
Identities = 17/49 (34%), Positives = 34/49 (69%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K K+++K+K++ KEEKKK+K K +++ K+ + K++ K+K+ K
Sbjct: 96 KEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPK 144
Score = 31.8 bits (72), Expect = 0.16
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKK---KEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+KR K+K+K+K+KK EE + +EK++E + K KK KKK KK
Sbjct: 137 AKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKK 187
Score = 31.4 bits (71), Expect = 0.20
Identities = 15/48 (31%), Positives = 33/48 (68%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K ++ K + +++K++E+ KE++K++K+K +EE K +K K++ K
Sbjct: 91 KTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK 138
Score = 31.0 bits (70), Expect = 0.24
Identities = 16/47 (34%), Positives = 33/47 (70%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
K ++ +++ K+ + K++EK+KEK+ EE + +EEEKK+++ + K
Sbjct: 126 EEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAK 172
Score = 31.0 bits (70), Expect = 0.29
Identities = 14/48 (29%), Positives = 37/48 (77%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+ + E K+++K+K++ +++K+K+KE+ K++ +++K K++ K+K+
Sbjct: 95 AKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRP 142
Score = 30.6 bits (69), Expect = 0.37
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K K K K+ K E K+E++++E+ K+E++KKK+K K++ K
Sbjct: 84 GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKD 130
Score = 30.2 bits (68), Expect = 0.49
Identities = 13/50 (26%), Positives = 33/50 (66%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K K ++ K + K++++EK++ K +++KKK++ +++ K +K K++
Sbjct: 88 PAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 30.2 bits (68), Expect = 0.53
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K K K + K + K++EK KE+ K+++++KK+K K++ K +
Sbjct: 84 GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDR 131
Score = 29.9 bits (67), Expect = 0.72
Identities = 16/52 (30%), Positives = 35/52 (67%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K+KK +E + ++++KK++ + K + K+ KKK KKK+ +++K++ A
Sbjct: 148 KEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQA 199
Score = 29.9 bits (67), Expect = 0.73
Identities = 17/51 (33%), Positives = 37/51 (72%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ KK+K KE+ K + K++ +EK+ K KE++K+K+ E+ + ++++KK++
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRER 168
Score = 27.9 bits (62), Expect = 2.6
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ +++ R + + KK KKK KKKE +EEK+++ + K K ++ N
Sbjct: 163 EKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNE 215
Score = 27.2 bits (60), Expect = 4.8
Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKK----EEEKKKKKKKKKKK 159
+ ++ + +E++KK+++ + K KK +K+ KK EEEK+++ ++ K
Sbjct: 153 KVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVK 205
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 37.2 bits (87), Expect = 0.002
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K K + ++ ++ KK++ +KEK ++K + + +KK+K + +K
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQK 153
Score = 34.5 bits (80), Expect = 0.012
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+K+ +E K K ++ +++ KK + EK+K ++K K K +KK
Sbjct: 100 RKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRK 148
Score = 34.1 bits (79), Expect = 0.015
Identities = 8/51 (15%), Positives = 29/51 (56%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
++ ++ KK++ +K++ ++E++ + K +++ K + +K + + D
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
Score = 33.4 bits (77), Expect = 0.031
Identities = 6/48 (12%), Positives = 27/48 (56%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ +++ +K++ +K+K ++++ + + +KK + + +K + +
Sbjct: 114 RAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161
Score = 33.4 bits (77), Expect = 0.034
Identities = 9/52 (17%), Positives = 27/52 (51%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ +++ K+++ +K+K ++K K K +KK++ +K + + +
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDI 164
Score = 32.6 bits (75), Expect = 0.054
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+K R+E+K K +KK + + +K + + + + + K K
Sbjct: 129 EKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVK 176
Score = 32.6 bits (75), Expect = 0.059
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K K + ++ +++ KK E EK K +++++ + K +KK+K +
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQK 153
Score = 32.6 bits (75), Expect = 0.060
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+K + ++K K K +K+ K + ++ E + + + + K A
Sbjct: 127 EKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVKA 177
Score = 32.2 bits (74), Expect = 0.068
Identities = 9/50 (18%), Positives = 29/50 (58%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ ++ +++ KK++ +KE+ + +RK + K +++K + +K + +
Sbjct: 111 QAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTP 160
Score = 29.9 bits (68), Expect = 0.50
Identities = 9/54 (16%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEE---KKKKEEEKKKKKKKKKKKKNAL 163
KK++ +K+K ++++K + K ++K + +K + + + A+
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAV 173
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 37.3 bits (87), Expect = 0.002
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
L +KKKKR+ ++ + + + E+K+K K + +KKK +E K K KK K
Sbjct: 223 LDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKG 279
Score = 33.1 bits (76), Expect = 0.039
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K ++ KKK ++ +++ + E R E+K+K +EE KKKK K+ K AL
Sbjct: 222 PLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKAL 272
Score = 28.1 bits (63), Expect = 2.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
+ R EKK+K ++ KK++ K+ K + KK + KK
Sbjct: 244 AESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 27.7 bits (62), Expect = 3.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
+ + ++K+K K++ KKK+ K+ + K KK + KK
Sbjct: 244 AESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 26.5 bits (59), Expect = 6.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKK 144
K+K ++E KKKK K+ K + K+ + KK
Sbjct: 250 KKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 37.4 bits (87), Expect = 0.002
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKK--------KEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K++ +++ KKK+KK KK+ + +E + K+ +KKKKKKKKKKKKN
Sbjct: 13 QKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNL 71
Score = 35.5 bits (82), Expect = 0.008
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 11/63 (17%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKE-----------KRKEEKKKKEEEKKKKKKKKKKK 159
K+++++ K+K KKK K+ KK +E + K+ KKKKKKKKKKK
Sbjct: 8 NEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKK 67
Query: 160 KNA 162
K
Sbjct: 68 KKN 70
Score = 31.6 bits (72), Expect = 0.15
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 112 NKKKKRKEKKKKKDKKK---------KKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+K +KK KK KK + + +E ++ KK+++KKKKKKKK +
Sbjct: 16 QNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAY 75
Query: 163 LD 164
Sbjct: 76 DL 77
Score = 29.7 bits (67), Expect = 0.76
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 15/58 (25%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKK---------------KEEEKKKKKKKKKKKKN 161
E + K+ K++ K++ K+K K+ KK +E E K+ KKKKKKK
Sbjct: 7 ENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKK 64
Score = 28.1 bits (63), Expect = 2.1
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ ++ + K+ +KKK+K+K++KKK E ++
Sbjct: 44 ISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAA 89
Score = 27.0 bits (60), Expect = 5.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
E + E ++++++ K++ KKK KK KK + D
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDD 37
Score = 26.6 bits (59), Expect = 7.7
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ + E K+ KKKKK++KKK+K E + + N
Sbjct: 45 SENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDN 93
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 37.2 bits (86), Expect = 0.002
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 114 KKKRKEKKKKK-----DKKKKKEEKKKEKRKEEKKKKEEEKKKK-----KKKKKKKKNAL 163
K + K+K K DK+ K E E E K+ E+K KKKK +
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKV 851
Query: 164 D 164
D
Sbjct: 852 D 852
Score = 35.3 bits (81), Expect = 0.010
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE-------KKKKKKKKKKKKN 161
R K+K +++ K+ K + + E + K++EE+ KKKK K N
Sbjct: 796 RAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKVDN 853
Score = 28.0 bits (62), Expect = 2.5
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 125 DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K K+K K EK ++E K + + +
Sbjct: 790 TIKAAARAKQKPK---EKGPNDKEIKIESPSVETEGER 824
Score = 27.6 bits (61), Expect = 3.3
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
E N K+ + E + + E+ K++EEK KKKK K
Sbjct: 803 EKGPNDKEIKIESPSVETEG----ERCTIKQREEKGIDAPAILNVKKKKPYK 850
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 37.1 bits (86), Expect = 0.002
Identities = 13/50 (26%), Positives = 34/50 (68%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K + ++ + K K+E+ K+E+ ++++K++ +E K+K++K ++KK
Sbjct: 385 LGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 30.5 bits (69), Expect = 0.35
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K+ +K + KK + + + + +E + K +EEK K+++ +KK+K D
Sbjct: 372 KEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQAD 421
Score = 28.2 bits (63), Expect = 1.9
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKE-----KRKEEKKKKEEEKKKKKKKKKKKK 160
K+ +K + K + K+E K KEEK K+EE +KK+K++ + K
Sbjct: 372 KEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 37.0 bits (86), Expect = 0.003
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
R EKK K KK K K K + +K K K+ KKK
Sbjct: 770 RGEKKAKPKAAKKDARKAK-KPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 34.7 bits (80), Expect = 0.014
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
R +KK + + KK +K KK K +K K K KKK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 34.7 bits (80), Expect = 0.015
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEE-------KKKKEEEKKKKKKKKKKKKNAL 163
RN K +EK KK D KK ++++ +K + +K+ + K KK +K K
Sbjct: 732 RNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPS 791
Query: 164 D 164
Sbjct: 792 A 792
Score = 33.9 bits (78), Expect = 0.032
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEE--------------KKKKEEEKKKKKKK 155
+ +++ R K ++K KK + KK ++ + +KK + K KK
Sbjct: 725 ISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDA 784
Query: 156 KKKKKNA 162
+K KK +
Sbjct: 785 RKAKKPS 791
Score = 33.2 bits (76), Expect = 0.059
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
+KK K K KKD +K K+ K ++ K + KKK
Sbjct: 771 GEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 32.8 bits (75), Expect = 0.065
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K KR++ KK + + + ++K K + KK+ K KK K +K A
Sbjct: 748 GKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAA 799
Score = 32.0 bits (73), Expect = 0.11
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKE 146
KK ++ KK K +K K KR +KK E
Sbjct: 780 AKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 30.1 bits (68), Expect = 0.59
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 111 RNKKKKRKEKKK----------KKDKKKKKEEKKKEKRKE---EKKKKEEEKKKKKKKKK 157
+ K+R+ KK + K K K KK ++ + K +K K K+ K
Sbjct: 749 KKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAK 808
Query: 158 KKKNA 162
KK
Sbjct: 809 KKVAE 813
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 36.2 bits (84), Expect = 0.003
Identities = 15/44 (34%), Positives = 37/44 (84%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+R+E+KK ++K++ + ++++E +E +KKKEEE++K+++++ +K
Sbjct: 27 EREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARK 70
Score = 33.5 bits (77), Expect = 0.022
Identities = 18/55 (32%), Positives = 43/55 (78%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E R ++KK +EK++ + K++++ E+++EK+KEE+++KE E++ +K++++ +K
Sbjct: 23 AEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEK 77
Score = 31.6 bits (72), Expect = 0.11
Identities = 15/44 (34%), Positives = 37/44 (84%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E++KK ++K++ E K++E+ +EE++KK+EE+++K+++++ +K
Sbjct: 29 EERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQ 72
Score = 29.3 bits (66), Expect = 0.64
Identities = 13/48 (27%), Positives = 36/48 (75%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK K++ K ++K+ ++++++ E+ + E++KK EEK++ ++K++++
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEEL 48
Score = 28.5 bits (64), Expect = 1.3
Identities = 14/45 (31%), Positives = 35/45 (77%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
++ +RKE+++ +++++KK+E+++ K +EE+ +KE+E+ +K K
Sbjct: 37 KREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSS 81
Score = 27.4 bits (61), Expect = 3.5
Identities = 11/48 (22%), Positives = 34/48 (70%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K++ K ++K ++++ E ++E+R+E KK +E+ + ++K++++ ++
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEER 52
Score = 25.8 bits (57), Expect = 9.5
Identities = 14/55 (25%), Positives = 42/55 (76%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ +++++E ++++ +++KK E+K+E ++E+++ EEE++KKK+++++K+
Sbjct: 13 EKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQ 67
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 36.3 bits (84), Expect = 0.003
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
N + K + K +K K K + + KK +EKK++KKK KKKK L
Sbjct: 28 GNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKVPLQ 81
Score = 26.3 bits (58), Expect = 8.4
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ + + +K + K+K E K + K +K K A
Sbjct: 10 KRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKA 52
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 36.1 bits (84), Expect = 0.003
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
WL KK +R +KK+ K+ + KK+ E++KK+++KK KKKK KK A
Sbjct: 146 LAWLL-KKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAA 200
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 35.4 bits (82), Expect = 0.004
Identities = 20/50 (40%), Positives = 38/50 (76%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ ++KR+EK+++K++K++KEEK+KE K +K+E EK+ ++ +K K K
Sbjct: 12 IDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNK 61
Score = 29.6 bits (67), Expect = 0.45
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
E K+++++EK++K ++K+KE K +KEE++K+ EE +K K K
Sbjct: 14 IEEKREEKEREKEEKERK--EEKEKEWGKGLVQKEEREKRLEELEKAKNKP 62
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 36.3 bits (85), Expect = 0.004
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
E L +K ++ + D K KK K +K K++ +K K
Sbjct: 809 EALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 33.6 bits (78), Expect = 0.032
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
EK +K K +K K + K++ +K K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 33.2 bits (77), Expect = 0.047
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
K K + K KK + +K +++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKF--SRKTKQQYVASEKDGKA 858
Score = 29.4 bits (67), Expect = 0.81
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 130 KEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K EK + K +K K +K K+
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQY 849
Score = 27.8 bits (63), Expect = 2.9
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 124 KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+K +K + ++ K+ K +K K++
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYV 850
Score = 27.8 bits (63), Expect = 3.3
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 130 KEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
EK ++ R ++ KK K +K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTK 846
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 36.0 bits (84), Expect = 0.006
Identities = 14/50 (28%), Positives = 33/50 (66%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
L +++ ++K ++ + K+ EK KE+ +E+K+K +EE+ K ++ +K+
Sbjct: 525 LEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
Score = 31.0 bits (71), Expect = 0.32
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
L K ++ + K+ +K K++ E+KKEK +EE+ K EE +K+ ++
Sbjct: 532 LEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA 578
Score = 30.6 bits (70), Expect = 0.33
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K + +K K + E RK K E+++KKKKK+K+K++
Sbjct: 591 KELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEE 636
Score = 29.0 bits (66), Expect = 1.1
Identities = 12/48 (25%), Positives = 30/48 (62%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+ ++ +K K + + +++ + +KKE++KKK+K+K+++ K
Sbjct: 591 KELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
Score = 28.3 bits (64), Expect = 2.5
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 26/83 (31%)
Query: 104 SLYTEW------LRNKKKKRKEKKKKKDKKKKKEEKK--------------------KEK 137
L E L+ ++ K E+ +K+ ++ KE KK K
Sbjct: 548 KLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAH 607
Query: 138 RKEEKKKKEEEKKKKKKKKKKKK 160
E +K+ + +KK+KKKKK+
Sbjct: 608 ELIEARKRLNKANEKKEKKKKKQ 630
Score = 27.9 bits (63), Expect = 2.7
Identities = 11/51 (21%), Positives = 31/51 (60%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+ + ++ +K K++ ++KKE+ ++E+ K ++ ++E ++ K+ KK
Sbjct: 534 QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKK 584
Score = 27.9 bits (63), Expect = 2.7
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 112 NKKKKRKEKKKK-KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
K + E +K+ +KKE+KKK++++++++ K ++ K +K
Sbjct: 604 VKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQK 651
Score = 26.7 bits (60), Expect = 7.7
Identities = 12/39 (30%), Positives = 27/39 (69%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+++ ++K EE + ++ EK K+E E+KK+K ++++ K
Sbjct: 528 LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK 566
Score = 26.3 bits (59), Expect = 8.5
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 125 DKKKKKEEKKKE---KRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+ +++ E+K +E KE +K KEE ++KK+K ++++ L
Sbjct: 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL 568
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 34.7 bits (80), Expect = 0.009
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+++ ++ +++D + K E K++K++E K K E++K K + KK K
Sbjct: 100 ETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 34.3 bits (79), Expect = 0.011
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+ ++++ + K + K+K++++ K K EK+K + E KK K K K
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 34.0 bits (78), Expect = 0.015
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
++ ++ + K + K+KK+ + + + E++K K E KK K K K
Sbjct: 107 DETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 33.6 bits (77), Expect = 0.017
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
E++ + K + +EKKK + + K +KE+ K + KK K K
Sbjct: 109 TEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150
Score = 30.9 bits (70), Expect = 0.16
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ +++ + K + ++KK++ + K ++E+ K + KK K K
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150
Score = 30.1 bits (68), Expect = 0.30
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 124 KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
D+ ++++ + + +EKKK+E K K +K+K K +
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPK 144
Score = 26.3 bits (58), Expect = 5.7
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
E++ + +++ + K + KE+KK++ + K +K+K K +
Sbjct: 101 TEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPK 144
Score = 25.9 bits (57), Expect = 8.9
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 131 EEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
EE+ +E+ +E ++++ + K + K+KKK+
Sbjct: 98 EEETEEESTDETEQEDPPETKTESKEKKKR 127
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 35.2 bits (82), Expect = 0.010
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 110 LRNKKKKRKEK-------KKKKDKKKK------KEEKKKEKRKEEKKKKEEEKKKKKKKK 156
L +KK +K + ++ K+ K++ +++ K K +KKK+++E K K K
Sbjct: 29 LAQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKS 88
Query: 157 KKKKNALD 164
K + LD
Sbjct: 89 KPRLFVLD 96
Score = 34.8 bits (81), Expect = 0.012
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 103 TSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
T+L ++ K++ + KK+ K + +KK++++E K K + K +
Sbjct: 43 TNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 35.1 bits (81), Expect = 0.012
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
L + +K KEK K K K E KKE+ ++KK+E+K K +++ +
Sbjct: 346 LEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 34.7 bits (80), Expect = 0.015
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
R+E +K+ +K K+K K K K E+ KKE + ++KKK+KK
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKA 386
Score = 31.2 bits (71), Expect = 0.23
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
LR + +KR EK K+K K + K E+ K+E+ + KKK+KK K +++
Sbjct: 342 LREELEKRIEKLKEKPPKPPTK-AKPERDKKERPGRYRRKKKEKKAKSERR 391
Score = 28.1 bits (63), Expect = 2.1
Identities = 10/47 (21%), Positives = 26/47 (55%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ +++ +K+ ++ K+K + K K E +KK++ + ++KK
Sbjct: 335 GEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKK 381
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 34.8 bits (80), Expect = 0.013
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ K K+K K +KK +K K K K + K K + K + K KK K A
Sbjct: 75 TPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAK 127
Score = 33.6 bits (77), Expect = 0.030
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ + + +E+ K + + E K KE+ K +++ KK K K K K K
Sbjct: 57 QPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPK 108
Score = 33.2 bits (76), Expect = 0.038
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K+K + EKK KK K K K + K + + + + K ++ K K N
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQP 135
Score = 33.2 bits (76), Expect = 0.041
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K E + K KE+ K EK+ ++ K K + K K K K K +
Sbjct: 68 KPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQP 115
Score = 32.8 bits (75), Expect = 0.045
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K KEK K + K KK + K K K K + K K + K KK K K
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKA 128
Score = 30.9 bits (70), Expect = 0.22
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+++ K + + + K KEK K EKK K+ + K K K K K K
Sbjct: 63 PEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVK 112
Score = 30.5 bits (69), Expect = 0.29
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ + E K K+K K EKK +K K + K K + K K K + K KK
Sbjct: 71 TEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSK 123
Score = 30.5 bits (69), Expect = 0.35
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ E + +++ K E + K KE+ K +KK KK K K
Sbjct: 56 PQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPK 102
Score = 30.1 bits (68), Expect = 0.39
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K +K+ +K K K K K K + K + + + KK + K +
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPP 139
Score = 29.4 bits (66), Expect = 0.67
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ E +++ K + E E + K+K + +KK KK K K K
Sbjct: 56 PQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPK 102
Score = 28.2 bits (63), Expect = 2.0
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ + + +++ + E + + K+K + EKK KK K K K
Sbjct: 54 EEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKP 103
Score = 25.9 bits (57), Expect = 9.8
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K KK K K K K K K K + + + +K K + + + A
Sbjct: 93 KPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAA 142
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 35.0 bits (81), Expect = 0.013
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ +EK+ K+++ K + K K + + K K++EKKKKK K K A
Sbjct: 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASV 1194
Score = 32.3 bits (74), Expect = 0.089
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+K + +KK+KK KK ++ KK K+ + ++K+K K K
Sbjct: 1167 SKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKK 1217
Score = 32.3 bits (74), Expect = 0.092
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ KKKK +KK KKK K + ++ + + ++ +KKK +
Sbjct: 1314 LEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSD 1362
Score = 31.9 bits (73), Expect = 0.13
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 109 WLRNKKKKRK--EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
WL + K + E++++ ++K+ +E++ + + + K K + K KKK+KKKKK++ D
Sbjct: 1130 WLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSAD 1187
Score = 31.6 bits (72), Expect = 0.16
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
LR K K+KEKKKKK K ++ + E+ K K KK ++
Sbjct: 1168 KLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGS 1223
Score = 31.2 bits (71), Expect = 0.22
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K+ ++++ K K K K + +K + +K+EKKKK+ K KK +
Sbjct: 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNS 1198
Score = 30.8 bits (70), Expect = 0.34
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
E + K + K K K K K K K+KE+KKKK K KK +D
Sbjct: 1144 QEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVD 1202
Score = 29.2 bits (66), Expect = 1.1
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
R + KKKKK +KK +KK + R ++ + + ++ +KKK ++ +
Sbjct: 1313 RLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
Score = 28.9 bits (65), Expect = 1.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K K + +K K KKK+K++KK K +K K+ +K+K +
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKP 1213
Score = 28.9 bits (65), Expect = 1.3
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K K K K +K K KKKE+KKK+ ++ KK K+ +K+ D
Sbjct: 1159 KSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDD 1211
Score = 28.9 bits (65), Expect = 1.4
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K ++ + KKK+ KKKK K +K K + +K+K K N
Sbjct: 1167 SKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKS 1218
Score = 28.5 bits (64), Expect = 1.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ +K K K+K+KKK K + KK K+ +EK+K K KK
Sbjct: 1167 SKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKK 1217
Score = 28.1 bits (63), Expect = 2.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
K+K KK+ + ++KKK ++K +KKK + + K+ +
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQ 1348
Score = 27.3 bits (61), Expect = 4.3
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
++ K K K K +K K +KK++K+K+ K ++ K+ +
Sbjct: 1156 QRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKR 1207
Score = 27.3 bits (61), Expect = 4.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
N K KKK KK+ + K+K++ +KK KKK K + K+ +
Sbjct: 1296 SNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASAS 1347
Score = 26.9 bits (60), Expect = 5.5
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
E ++K K+++ K K + K K + KKK++++KK K KK
Sbjct: 1142 EEQEEVEEKEIAKEQRLKSKTKGKASKLRK-PKLKKKEKKKKKSSADKSKKASV 1194
Score = 26.9 bits (60), Expect = 5.5
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 96 LSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
L G + + KKK++K+KK DK KK KR + +K++ + K KK
Sbjct: 1158 LKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKK 1217
Query: 156 KKK 158
Sbjct: 1218 SNS 1220
Score = 26.9 bits (60), Expect = 6.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
KK+ +K+ + K++KK EK+ KKK + K+ +
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQ 1348
Score = 26.9 bits (60), Expect = 6.9
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 114 KKKRKEKKK----------KKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+KK KE +K +D K +E ++++ EEK+ +E++ K K K K K
Sbjct: 1112 EKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLR 1170
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 35.1 bits (80), Expect = 0.014
Identities = 13/51 (25%), Positives = 34/51 (66%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+++ K R K++ KD+++K+ + ++ KEE+ K+E++++++ +K N
Sbjct: 1014 KHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDN 1064
Score = 33.9 bits (77), Expect = 0.034
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEE--KKKKEEEKKKKKKKKKKKK 160
R K ++ KE+ + + K++E KKEK +E+ +K + K+ KK+ KKK
Sbjct: 1025 RIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKK 1076
Score = 30.1 bits (67), Expect = 0.52
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEE--EKKKKKKKKKKKKNA 162
K + KE+ K +++K++ E ++ K +E KK++E ++ +K K+ A
Sbjct: 1018 KDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMA 1069
Score = 26.6 bits (58), Expect = 8.2
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 119 EKKKKKDKKKK--KEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
E ++K + K + KE K ++ KE + + K+++ KK+K++
Sbjct: 1010 ECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRI 1057
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 34.6 bits (80), Expect = 0.014
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ KK+ + K K +KK + + KK E++ K +D
Sbjct: 72 SDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDID 125
Score = 33.4 bits (77), Expect = 0.042
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K + K KKK K+E K+ E+K +++ K N D
Sbjct: 80 KTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQAD 131
Score = 33.0 bits (76), Expect = 0.049
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ KKK K K K K++ K + + KK +KK K+
Sbjct: 67 DDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDD 116
Score = 32.7 bits (75), Expect = 0.064
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ KKK K K K K+K + + +K +KK K +
Sbjct: 69 ATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNY 120
Score = 32.3 bits (74), Expect = 0.10
Identities = 14/58 (24%), Positives = 21/58 (36%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
TE KKK + K K K++ K E +K +K+ K K +
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVL 127
Score = 31.5 bits (72), Expect = 0.15
Identities = 13/48 (27%), Positives = 18/48 (37%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K + KK K K + KKK ++E KK +KK
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNA 111
Score = 31.5 bits (72), Expect = 0.19
Identities = 13/52 (25%), Positives = 18/52 (34%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K K KKK K + KK EK+ K + K + + D
Sbjct: 84 KAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDD 135
Score = 31.5 bits (72), Expect = 0.19
Identities = 14/52 (26%), Positives = 19/52 (36%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
E K K K + K +KK K+E KK +KK + D
Sbjct: 65 DTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDD 116
Score = 31.1 bits (71), Expect = 0.25
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K + +++ KKK +K K K + +EE K+ + KKK
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKT 48
Score = 30.3 bits (69), Expect = 0.44
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K + KKK K K K KKK +++ KK +KK
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNAL 112
Score = 30.0 bits (68), Expect = 0.60
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ K K K K K + + K+ K+ K+++ K + D
Sbjct: 80 KTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDD 133
Score = 28.8 bits (65), Expect = 1.6
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ K KKK KD+ ++ +K+ ++ K + + D
Sbjct: 84 KAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDD 137
Score = 28.0 bits (63), Expect = 2.2
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K K+K K + KK EKK K++ ++ + + D
Sbjct: 88 AKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDD 139
Score = 28.0 bits (63), Expect = 2.7
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K + +++ K K KK K K K K++ +E + KKK ++
Sbjct: 5 STKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQV 55
Score = 27.7 bits (62), Expect = 3.1
Identities = 8/51 (15%), Positives = 16/51 (31%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ + K++ K + K ++K K + KK
Sbjct: 58 FLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEK 108
Score = 27.7 bits (62), Expect = 3.4
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ K ++ ++ K+ + KKK + K K KK D
Sbjct: 45 KKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKD 98
Score = 27.3 bits (61), Expect = 4.5
Identities = 9/53 (16%), Positives = 20/53 (37%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K +K+ K + D KK E+K + ++ ++ + + D
Sbjct: 88 AKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDD 140
Score = 26.9 bits (60), Expect = 6.6
Identities = 8/52 (15%), Positives = 17/52 (32%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K +KK K + K+ +KK ++ + + + D
Sbjct: 87 AAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDD 138
Score = 26.5 bits (59), Expect = 7.4
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ + KD E +K+ + K K KKK K + ++
Sbjct: 51 QIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDS 102
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 35.0 bits (81), Expect = 0.014
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ KK +K ++K ++ + E +KKE+ E+ K K +K KK KK N
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Score = 32.3 bits (74), Expect = 0.093
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+ + ++ K + KK EEK ++ E +KK+EE +K K K K
Sbjct: 89 ENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDK 135
Score = 31.5 bits (72), Expect = 0.20
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK-KKKKKKKKKNAL 163
++ +KE KK ++K ++ E + ++K +E +K K + K KK KK + L
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNL 148
Score = 30.7 bits (70), Expect = 0.28
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
+++KK +K EK+ ++ + E K E+E K+ +K+
Sbjct: 411 DAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQ 451
Score = 29.6 bits (67), Expect = 0.74
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K+KK EK ++E K+ E E K +K+ K+ + L
Sbjct: 411 DAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQL 452
Score = 29.2 bits (66), Expect = 1.1
Identities = 11/45 (24%), Positives = 29/45 (64%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
E+ + + + ++ +K+ +K +E+ ++ E E +KK+++ +K KN
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKF 132
Score = 28.4 bits (64), Expect = 1.8
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
L+ + KK +EK ++ + + +K+E++ EK K + K +K KK
Sbjct: 100 LKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Score = 27.3 bits (61), Expect = 4.9
Identities = 11/54 (20%), Positives = 27/54 (50%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ ++ + + +KK+++ +K K + + K+ KK + + K KKN +
Sbjct: 110 KIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKE 163
Score = 26.5 bits (59), Expect = 9.0
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
+K+K+ +K +K+ ++ + E + EK+ KE EK+
Sbjct: 414 QKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQ 451
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 34.8 bits (81), Expect = 0.016
Identities = 12/45 (26%), Positives = 34/45 (75%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
++ E +K++++ +K+EK+ E++++E +KKEEE ++ +++ ++
Sbjct: 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 33.6 bits (78), Expect = 0.033
Identities = 15/63 (23%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Query: 111 RNKKKKRKEKK---------KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
R + ++ EK+ +K + +K+EE+ ++K KE ++K++E +KK+++ ++ +
Sbjct: 80 RRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEE 139
Query: 162 ALD 164
L
Sbjct: 140 QLQ 142
Score = 33.2 bits (77), Expect = 0.042
Identities = 15/63 (23%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKK------EKRKEEKKKKEEEKKKKKKKKKKKKN 161
E + + + KE ++++++ +K E++ +++ E +K+EEE +KK+K+ ++K+
Sbjct: 65 EIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQ 124
Query: 162 ALD 164
L+
Sbjct: 125 ELE 127
Score = 32.8 bits (76), Expect = 0.058
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KK+ E K++ K + + EK+ +R+ E +K E+ +K++ +K L+
Sbjct: 55 KKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLE 106
Score = 32.4 bits (75), Expect = 0.094
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKE-EKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
L KK+ + KK+ + K+E K + + ++E +++ E +K +K+ +K+ LD
Sbjct: 44 LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLD 99
Score = 30.9 bits (71), Expect = 0.25
Identities = 12/45 (26%), Positives = 34/45 (75%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
++K + EK++++ +KK+KE ++K++ E+K+++ EE +++ ++
Sbjct: 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 30.9 bits (71), Expect = 0.31
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K+ + K K+ +++ + +E +KE + K+E + K++ K +N +
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFE 74
Score = 30.5 bits (70), Expect = 0.34
Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEK----RKEEKKKKEEEKKKKKKKKKK 158
K+ + + K+ ++ KK+ E KKE ++E K + E +K+ ++++ +
Sbjct: 34 KEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE 83
Score = 30.1 bits (69), Expect = 0.46
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
++R K + K K+ +++ K+ EE KKE + KK+ E K++ K + +
Sbjct: 23 FVRKKIAEAKIKEAEEEAKRILEEAKKEA-EAIKKEALLEAKEEIHKLRNE 72
Score = 29.4 bits (67), Expect = 0.91
Identities = 11/51 (21%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 116 KRKEKKKKKDKKKKKEEKKKE-KRKEEKKKKEEEK-KKKKKKKKKKKNALD 164
K + K + + +K+ E++ E ++ E++ ++EE +K + +K++ L+
Sbjct: 63 KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELE 113
Score = 27.0 bits (61), Expect = 5.3
Identities = 10/42 (23%), Positives = 29/42 (69%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
L +K+ +E +KK+ + ++K+++ ++K +E ++ EE+ ++
Sbjct: 102 LELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 34.2 bits (79), Expect = 0.016
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
E ++K+++K K K K K+ + K +E+EK K++K++K + +
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEE 86
Score = 31.2 bits (71), Expect = 0.21
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
E+ ++K+++K K K + +K K K EE++K K++K++K L
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 30.8 bits (70), Expect = 0.22
Identities = 14/50 (28%), Positives = 31/50 (62%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K KK + K ++ +K K+E+++K R+ E+ E+E +K + +K ++ +
Sbjct: 57 KAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEES 106
Score = 30.4 bits (69), Expect = 0.30
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
++K +EK K K K K+ K + ++EK K+E+E+K ++
Sbjct: 42 DEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 29.6 bits (67), Expect = 0.53
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
W + ++++E+K K K K ++ K K +E++K K E+++K ++
Sbjct: 37 WDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 29.2 bits (66), Expect = 0.80
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K K +K K K ++K+K + +K+EK E ++ E + +K + +K
Sbjct: 55 KAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRK 101
Score = 27.7 bits (62), Expect = 2.6
Identities = 10/44 (22%), Positives = 29/44 (65%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+EK+++K K K + KK + + ++K++ +++K++K ++ +
Sbjct: 43 EEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEE 86
Score = 26.2 bits (58), Expect = 9.3
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 125 DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+++ +++E++K K + K K+ K K ++K+K K+
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKR 74
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 34.6 bits (80), Expect = 0.016
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K+ KK + K K ++KKK+ K E ++ K KKK K
Sbjct: 347 TATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 34.2 bits (79), Expect = 0.019
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+ K K K K E+ EK E K+K++EKKK++KKKK+
Sbjct: 304 EMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQ 344
Score = 32.3 bits (74), Expect = 0.093
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKE----EEKKKKKKKKKKKKN 161
+K K K ++ + + +EKKKEK+KEEKKKK+ EE+ +K + + K
Sbjct: 311 RKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKE 363
Score = 32.3 bits (74), Expect = 0.099
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
++ + KK + K+K + K E+ E+ + +EKKK+KKK++KKK ++
Sbjct: 290 KYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIE 346
Score = 30.4 bits (69), Expect = 0.39
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
L+ K K K + K+ K E + +++ K K E + +K + K+KK
Sbjct: 282 LQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKK 336
Score = 29.6 bits (67), Expect = 0.62
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
L++K ++ EK + K+KKKE+KK+EK+K++ ++ EE +K + + K+
Sbjct: 313 LKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEE 364
Score = 28.5 bits (64), Expect = 1.9
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+K + K+K K+KKKEEKKK++ + +++ E+ + + K++ K AL
Sbjct: 321 NEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENKTVAL 370
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 33.9 bits (78), Expect = 0.019
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
E+K K K++ E++KE KK +K + KKKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 32.4 bits (74), Expect = 0.074
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
Y E K+KE+ +++K+ K K +K E KKKK
Sbjct: 156 YAERKDA---KQKEEFAAEERKEALAAAAK---KSATPQKVETKKKK 196
Score = 29.3 bits (66), Expect = 0.68
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 128 KKKEEKKKEKRKEEK--KKKEEEKKKKKKKKKKK 159
K+KEE E+RKE K+ +K + KKKK
Sbjct: 163 KQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 27.3 bits (61), Expect = 3.3
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 129 KKEEKKKEK-RKEEKKKKEEEKKKKKKKK-----KKKK 160
+K+ K+KE+ EE+K+ KK KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 34.3 bits (79), Expect = 0.021
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKK-------KEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ N+ ++ KE + + + KE+K +++ E+ E + KK+K KK+ K N
Sbjct: 1519 EIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSN 1578
Score = 32.0 bits (73), Expect = 0.13
Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 100 QFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEK-----RKEEKKKKEEEKKKKKK 154
F S + + + + ++EK+ + + +++KK +EK +E+ + K
Sbjct: 1508 GFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIK 1567
Query: 155 KKKKKK 160
K+K KK
Sbjct: 1568 KRKNKK 1573
Score = 31.6 bits (72), Expect = 0.18
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
K + EEK K+K+K+EKKK+EE K+++K +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.8 bits (70), Expect = 0.30
Identities = 13/27 (48%), Positives = 23/27 (85%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEE 141
+++ +KKKKK+KKK++E K++EK + E
Sbjct: 742 EEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 30.8 bits (70), Expect = 0.37
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 23/74 (31%)
Query: 111 RNKKKKRKEKKKK--KDKKKKKEEKKKEKRKEEKKKKE---------------------E 147
+ KK +KK + + + +EEK+ + E + KE E
Sbjct: 1504 QKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAE 1563
Query: 148 EKKKKKKKKKKKKN 161
KK+K KK+ K+
Sbjct: 1564 SDIKKRKNKKQYKS 1577
Score = 29.7 bits (67), Expect = 0.90
Identities = 11/36 (30%), Positives = 27/36 (75%)
Query: 124 KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
KD + K + +EK K++KKK+++++++ K+++K +
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 29.3 bits (66), Expect = 1.0
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK ++ K E K EEK KK+++K+KKK+++ K++
Sbjct: 722 KKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKRE 762
Score = 28.1 bits (63), Expect = 2.6
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
KK R K + K ++K K+K++K+KK+EE+ K+++K +
Sbjct: 718 SGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 26.6 bits (59), Expect = 7.3
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
N + +K +K K +KK E + ++E+E + + + K+
Sbjct: 1493 NGNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEK 1542
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 33.9 bits (78), Expect = 0.023
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
R ++++ K+KKKKK KK KK + + + + L
Sbjct: 174 ARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKL 227
Score = 29.2 bits (66), Expect = 0.76
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K + +E++ KK KKKKK++ KK + +
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQV 221
Score = 29.2 bits (66), Expect = 0.87
Identities = 14/52 (26%), Positives = 19/52 (36%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ KK+K+KKKKK KK E E + + KK
Sbjct: 176 LEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKL 227
Score = 28.9 bits (65), Expect = 1.2
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 131 EEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
EE+ + + ++++ ++KKKKKKKK KK NA
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNA 197
Score = 28.9 bits (65), Expect = 1.2
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ KKKK+K+K KK + E + + + KK KKK++
Sbjct: 181 AKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRS 232
Score = 28.5 bits (64), Expect = 1.5
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
R KKKK+K+KKK K + + + + KK KK
Sbjct: 179 ERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKK 230
Score = 27.7 bits (62), Expect = 2.8
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK+K+KKKK K + + + + KK K
Sbjct: 179 ERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKK 230
Score = 27.3 bits (61), Expect = 3.8
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKKK+K+ KK E E + + KK KKK+ A
Sbjct: 185 KKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIA 234
Score = 26.5 bits (59), Expect = 6.6
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 129 KKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
++E + + R EE++ K+++KKKKKK KK
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATG 199
Score = 26.2 bits (58), Expect = 8.3
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
E + K + +++ KKK+K+K++K KK +
Sbjct: 168 EVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAV 210
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 33.3 bits (77), Expect = 0.023
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 121 KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
K+KK KKKKK+E + + K++K EE+K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 32.5 bits (75), Expect = 0.040
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
R KKKK+K+K+ + ++KKK+ E+RKE++K + KK
Sbjct: 83 RKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVP 129
Score = 30.6 bits (70), Expect = 0.21
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
K+KKK KKKKKE + E++K++ EE K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 30.2 bits (69), Expect = 0.24
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
K+K+K+KKKKK+ + +E+KKK EE+K+ ++
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 29.1 bits (66), Expect = 0.60
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+KKKK++KKKE E+KKK+ +++K+ +K
Sbjct: 83 RKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 29.1 bits (66), Expect = 0.71
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
K++K+KKKKK + + EEKKK+ E++K++++
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 27.9 bits (63), Expect = 1.9
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 130 KEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K +KKK+K+K+E + EE+KKK +++K++
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKED 113
Score = 27.5 bits (62), Expect = 2.2
Identities = 11/37 (29%), Positives = 28/37 (75%)
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K+K++KKK+K++ E +++++K +++K+ + A+D
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVD 118
Score = 27.5 bits (62), Expect = 2.4
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+KKK++KKK++ + ++KK++ +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 27.1 bits (61), Expect = 3.4
Identities = 11/35 (31%), Positives = 25/35 (71%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K+KK++KKK+K E ++K+++ +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 34.0 bits (78), Expect = 0.024
Identities = 12/47 (25%), Positives = 35/47 (74%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+NK+K +E+++ ++ + ++E+++++R +K++EE++ K+K K+
Sbjct: 135 KNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQ 181
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 33.6 bits (77), Expect = 0.028
Identities = 9/50 (18%), Positives = 31/50 (62%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
++ K+ + ++ + ++ KEE+K+ E+K+ K + +K+ ++ +++ +
Sbjct: 48 EQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEE 97
Score = 30.5 bits (69), Expect = 0.34
Identities = 9/53 (16%), Positives = 32/53 (60%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ KK +++ + ++ K+EEK+ ++++ K + EK+ ++ +++ ++ +
Sbjct: 49 QEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE 101
Score = 29.3 bits (66), Expect = 0.79
Identities = 8/51 (15%), Positives = 29/51 (56%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ + +E K+++ + E+K+ + E++ ++ EE+ +++ ++ +N
Sbjct: 57 QETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENE 107
Score = 28.5 bits (64), Expect = 1.2
Identities = 12/45 (26%), Positives = 29/45 (64%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
K++ KE +DK+ K + +K+++ EE+ ++E+E+ + +K+
Sbjct: 65 VKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
Score = 27.8 bits (62), Expect = 2.5
Identities = 10/50 (20%), Positives = 25/50 (50%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ + +++ K +E + E+ KEE+K+ + K+ K +K++
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKED 88
Score = 27.4 bits (61), Expect = 2.9
Identities = 10/46 (21%), Positives = 30/46 (65%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
++ K+ K +K+D++ ++E +++++ ++ +KE E+K + +K
Sbjct: 75 SEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEK 120
Score = 27.0 bits (60), Expect = 3.8
Identities = 10/49 (20%), Positives = 30/49 (61%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++ ++E+K+ + + K+++ EK EE +++ EE+ ++ + +K+
Sbjct: 61 EIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
Score = 26.2 bits (58), Expect = 8.0
Identities = 9/47 (19%), Positives = 26/47 (55%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
N + K + +K+ ++ +EE ++E + + ++E ++K + +K
Sbjct: 74 NSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEK 120
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 33.0 bits (76), Expect = 0.029
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 103 TSLYTE---WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
L +E WL +K K +K++K+ +K+ E +K K KK E+ +++ + +K+
Sbjct: 26 RGLLSELLQWLLIDRKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKE 84
Score = 27.2 bits (61), Expect = 3.0
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 127 KKKKEEKKKEKR--KEEKKKKEEEKKKKKKKKKKKKNAL 163
+K ++ +K+EK K ++ ++ K KK +K++ L
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEEL 78
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 33.6 bits (77), Expect = 0.032
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E+L ++ K K KK K+ + + +K K + ++K K +K+A
Sbjct: 36 EFLDELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSA 90
Score = 29.0 bits (65), Expect = 1.1
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 112 NKKKKRKEKKKKKDK-KKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
++K K +K K+ + + KK K E EEK K +K +
Sbjct: 44 SEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAES 92
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 33.8 bits (78), Expect = 0.032
Identities = 13/58 (22%), Positives = 20/58 (34%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
YTE + +K+ + E + K K EK K+ E K +A
Sbjct: 764 YTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSAD 821
Score = 30.0 bits (68), Expect = 0.52
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+K++KEK+ K + + K K K + E +D
Sbjct: 763 NYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVD 816
Score = 26.9 bits (60), Expect = 6.0
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
K K +K KD + + K + +
Sbjct: 782 KGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSADR 822
Score = 26.5 bits (59), Expect = 8.2
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 112 NKKKKRKEKKKKK-DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
N K EK+KK+ + K + E K K +K K+ + +A+
Sbjct: 759 NPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAV 811
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 33.8 bits (78), Expect = 0.032
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK-KKKKKKKNA 162
+++KKK ++ K + E ++ + + EK +E KK + K K+A
Sbjct: 441 IEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDA 487
Score = 32.2 bits (74), Expect = 0.10
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 109 WLRNKKKKRKEKKKKK-DKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
++KK+ E+ K + + ++ + E++K R+ KK E + K K
Sbjct: 439 RAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDK 485
Score = 28.0 bits (63), Expect = 2.4
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 117 RKEK---KKKKDKKKKKEEKKK--EKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
R+ K + + +KKK EE K E R+ ++++ ++ + KK + + A D
Sbjct: 432 RQAKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKD 484
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 32.3 bits (74), Expect = 0.042
Identities = 20/50 (40%), Positives = 39/50 (78%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ + +E ++K+++KK+K+E+K K++ +++KK+++KKKKKK KK K
Sbjct: 61 KETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKE 110
Score = 31.9 bits (73), Expect = 0.063
Identities = 18/54 (33%), Positives = 39/54 (72%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
E+ + +++K+++ ++K KK+ K +KKK+K+K++KK K+ KK++K+ K +
Sbjct: 67 EFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEE 120
Score = 30.8 bits (70), Expect = 0.15
Identities = 20/51 (39%), Positives = 39/51 (76%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
++KR+EKK+K ++K K+ K++K+K++KKKK++ KK KK++K+ + +
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSE 119
Score = 30.4 bits (69), Expect = 0.25
Identities = 20/48 (41%), Positives = 37/48 (77%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+K +KE + ++ ++K++E+K+K++ K KK+ + +KKK+KKKKKKK
Sbjct: 57 EKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAK 104
Score = 28.9 bits (65), Expect = 0.78
Identities = 16/39 (41%), Positives = 30/39 (76%)
Query: 124 KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ KK+ E+++ ++++EEKK+K+EEK KK+ K++KK
Sbjct: 57 EKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQ 95
Score = 28.5 bits (64), Expect = 0.90
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK+ +++KKK+K KKKKK +K +K ++E K EE ++++ ++ K
Sbjct: 83 TAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDK 132
Score = 28.1 bits (63), Expect = 1.5
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
R KKK++K+KKKK K KKEEK+ K EE +EEE ++ K+++ +
Sbjct: 90 RQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIME 141
Score = 27.3 bits (61), Expect = 2.7
Identities = 16/55 (29%), Positives = 37/55 (67%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ + K++K+K+KKK KKK K+ KKE+++ K +E ++++ ++ K++ ++
Sbjct: 84 AKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVE 138
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 33.6 bits (77), Expect = 0.042
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K + ++ K +E+ +E+ +E K+ K+ + K K
Sbjct: 896 QNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHKG 942
Score = 32.4 bits (74), Expect = 0.11
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++ + + + K EEK ++R EE K+ K+ + K K
Sbjct: 892 YSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHK 941
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 32.9 bits (76), Expect = 0.044
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 23/80 (28%)
Query: 99 TQFGTSLYTEWLRN------------KKKKRKEKKKKKDKKK-----------KKEEKKK 135
T F L T++ K K++ KD +K ++EKKK
Sbjct: 44 TFFAVMLETDYATKPVFQKNFFKDFRKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKK 103
Query: 136 EKRKEEKKKKEEEKKKKKKK 155
KEEKK +EEK K ++
Sbjct: 104 AMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 32.1 bits (73), Expect = 0.044
Identities = 13/23 (56%), Positives = 21/23 (91%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEE 148
++K EEK++EK+KEE+K++EEE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEE 96
Score = 28.2 bits (63), Expect = 0.96
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 3/28 (10%)
Query: 121 KKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
++ ++K+EEKKKE EEK+++EEE
Sbjct: 73 AAEEKAEEKEEEKKKE---EEKEEEEEE 97
Score = 26.7 bits (59), Expect = 3.2
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 131 EEKKKEKRKEEKKKKEEEKKK 151
++K + KEE+KKKEEEK++
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEE 93
Score = 26.7 bits (59), Expect = 3.4
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 130 KEEKKKEKRKEEKKKKEEEKK 150
E+K E+++EEKKK+EE+++
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEE 93
Score = 26.3 bits (58), Expect = 4.6
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEE 141
E+K ++ +++KK+E++KE+ +EE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 33.5 bits (76), Expect = 0.044
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
EKK KK KKK+K+EK+KE+ K++KK+ E K
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 32.0 bits (72), Expect = 0.14
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 121 KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
+KK K KKKE+K+KEK +++ KKKE E K
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 31.6 bits (71), Expect = 0.15
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
++ + K +K E+K K+ +K+EKK+KE+E+ K KKK+ + +L
Sbjct: 175 VQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLL 229
Score = 31.6 bits (71), Expect = 0.16
Identities = 12/39 (30%), Positives = 31/39 (79%)
Query: 125 DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
D+ K EE+++ +++ EK K+E++K++K+K+ +++ ++L
Sbjct: 79 DQYVKLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSL 117
Score = 30.0 bits (67), Expect = 0.58
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 93 EFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKK 144
E L+ T GT+ +E K + +E KK KKKK+ K+KE++K++KK
Sbjct: 247 EASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKH 298
Score = 28.9 bits (64), Expect = 1.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ + + +E KK K K++K++KE+E+KKKKKK +
Sbjct: 256 GTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 28.1 bits (62), Expect = 2.7
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 124 KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
K +++++ ++ EK K EKKK+E+EK+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 27.3 bits (60), Expect = 4.3
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
+ ++R EK K++ KK++KE++ + + + +E+
Sbjct: 89 RHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDED 124
Score = 27.3 bits (60), Expect = 5.0
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
L +++ R+ +K K +KKK+E++K+ +R+ E ++
Sbjct: 84 LEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDE 123
Score = 27.0 bits (59), Expect = 5.5
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
Y + ++ +++ +K K++KKK+++EK+ +R + +E
Sbjct: 81 YVKLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDE 123
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 32.6 bits (75), Expect = 0.044
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
L +KKK +K KK+K+ K++K+ K + +E K+ EE K +K ++ ++ N
Sbjct: 11 LVDKKKAKKAKKEKR-KQRKQARKGADDGDDELKQAAEEAKAEKAERDRELN 61
Score = 29.9 bits (68), Expect = 0.36
Identities = 12/51 (23%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKK--EKRKEEKKKKEEEKKKKKKKKKKKK 160
K+K+++ K+ +K +E K+ E+ K EK +++ E ++++ + ++K
Sbjct: 21 KKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
>gnl|CDD|213561 TIGR00809, secB, protein-export chaperone SecB. This protein acts
as an export-specific cytosolic chaperone. It binds the
mature region of pre-proteins destined for secretion,
prevents aggregation, and delivers them to SecA. This
protein is tetrameric in E. coli. The archaeal
Methanococcus jannaschii homolog MJ0357 has been shown
(PMID:14985117) to share many properties, including
chaperone-like activity, and scores between trusted and
noise [Protein fate, Protein and peptide secretion and
trafficking].
Length = 140
Score = 32.5 bits (74), Expect = 0.047
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 16/62 (25%)
Query: 58 KLSGIFRTPNVKGFEGSR-------------SRDLITSMLTRAGFRFQEFLLSPTQFGTS 104
K +G+F ++ + + +R++I+S + R F L+P F +
Sbjct: 75 KQAGVFNIIGIESEQMAHCLGVHCPNMLFPYAREIISSCVQRGT--FPPLNLAPVNFD-A 131
Query: 105 LY 106
LY
Sbjct: 132 LY 133
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 32.7 bits (75), Expect = 0.049
Identities = 11/53 (20%), Positives = 33/53 (62%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K+ + E+ ++++++K+ EE+++ + K + E+ + K+K K+ +K+ +
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 28.4 bits (64), Expect = 1.4
Identities = 9/40 (22%), Positives = 26/40 (65%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
+ ++ +E+ + K + ++ + K+K KE +K+++EE + +
Sbjct: 130 RDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
Score = 26.1 bits (58), Expect = 8.4
Identities = 8/50 (16%), Positives = 29/50 (58%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+++ +EK+ ++++++ K + K+K +E +K++ ++ + + A
Sbjct: 122 LEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRAA 171
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 33.3 bits (76), Expect = 0.051
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+KK K KKK K K + KKK + K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 31.7 bits (72), Expect = 0.19
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 121 KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+KK KKK K + K KKK + + KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 30.9 bits (70), Expect = 0.32
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
EKK K KK + K K ++K K + +K KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 29.8 bits (67), Expect = 0.65
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+KK + KKK + K K +KK K K KK K
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKK 782
Score = 29.8 bits (67), Expect = 0.77
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+KK K KKK K K + +KK K + KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 29.0 bits (65), Expect = 1.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
Y + +K+ + KKK K K K +K+ + K KK +K+
Sbjct: 739 YAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 29.0 bits (65), Expect = 1.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
K+ K KK K + K +K+ K K ++ KK+
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 27.1 bits (60), Expect = 4.8
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
++K K KKK K K K K++ K K KK KK+ L
Sbjct: 748 EKKTKAKKKSAST--------KGKAAKTVKKKSKAKSKKTTKKRAGPL 787
Score = 27.1 bits (60), Expect = 4.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
+KK K KKK K K + K+K K + KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKK----TTKKRA 784
Score = 26.7 bits (59), Expect = 6.8
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K K EKK + +K+ K + K KKK K K
Sbjct: 738 KYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKS 776
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 33.1 bits (75), Expect = 0.055
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
Y+E K K K KK+ +++EEKK + K+K+ KK K KK++ A
Sbjct: 515 YSETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQA 571
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 32.5 bits (74), Expect = 0.070
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+KK D+ +K+ K+KEKR+ E +K +E ++KK+++K+
Sbjct: 151 SRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKR 190
Score = 29.5 bits (66), Expect = 0.77
Identities = 15/44 (34%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
R + K+KEK++ +D +K KE+++ K++EEK++ +E+K+
Sbjct: 160 RKRSGKQKEKRRVEDSQKHKEDRR--KKQEEKRRNDEDKRPGGG 201
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 31.9 bits (73), Expect = 0.074
Identities = 11/50 (22%), Positives = 36/50 (72%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+KK+K +E++++ + ++ EE++ ++ E++ K + +K+++ ++K+K+
Sbjct: 96 LDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKE 145
Score = 29.9 bits (68), Expect = 0.40
Identities = 9/51 (17%), Positives = 33/51 (64%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+R K++K+++++++ + E+ E+ + ++ ++E K K++K+++ +
Sbjct: 90 VRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENE 140
Score = 28.8 bits (65), Expect = 0.82
Identities = 10/51 (19%), Positives = 36/51 (70%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
L KK+++E+++++ + ++ +E+++ EK+ + +++K+++ ++K+K
Sbjct: 94 LGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQK 144
Score = 28.8 bits (65), Expect = 0.87
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
R K +K KK+ +++++EE + E+ EE++ E +K+ K K++K+ +
Sbjct: 87 RKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENE 140
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 32.4 bits (74), Expect = 0.076
Identities = 16/57 (28%), Positives = 39/57 (68%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
Y WL K+ +R++K +K ++K+K+E++KE+ + E +++ ++K ++ ++K + A
Sbjct: 89 YENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQA 145
Score = 32.0 bits (73), Expect = 0.091
Identities = 13/53 (24%), Positives = 38/53 (71%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
EW K K++++K++++ +K++K+++++E+RK++ ++ ++ K K++ K
Sbjct: 184 LQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPK 236
Score = 29.7 bits (67), Expect = 0.57
Identities = 16/49 (32%), Positives = 38/49 (77%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ KKR ++ + K K++++++++E+RK+ KK++EEE++K+K ++ +K
Sbjct: 178 EEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 29.7 bits (67), Expect = 0.60
Identities = 13/45 (28%), Positives = 34/45 (75%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K + +++ KK+ +E + +K K++++K+EEE++K++KK++++
Sbjct: 169 AKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEE 213
Score = 27.8 bits (62), Expect = 2.7
Identities = 14/44 (31%), Positives = 34/44 (77%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E KK K +++K+EE+++++RK++++++E ++K ++ +K KN
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNV 231
Score = 27.4 bits (61), Expect = 3.6
Identities = 12/48 (25%), Positives = 35/48 (72%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K +R +++ K+ ++ E KK K++++K+++E K++KK+++++++
Sbjct: 169 AKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEER 216
Score = 26.6 bits (59), Expect = 5.5
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 106 YTEWLRNK----KKKRKEKK---------------KKKDKKKKKEEKKKEKRKEEKKKKE 146
Y EW R K K+R K K ++ +EE KK ++ E KK +
Sbjct: 134 YEEWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLK 193
Query: 147 EEKKKKKKKKKKKKN 161
++++K++++++K++
Sbjct: 194 QQQQKREEERRKQRK 208
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 32.2 bits (74), Expect = 0.080
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 101 FGTSLYTEWLRNKKKKRKEKKKKKDK---------KKKKEEKKKEKRKEEKKKKEEEKKK 151
F + + ++ + K+ K KK K ++++EKKK KEEKK +EEK+K
Sbjct: 59 FRKNFFKDFRKILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKEEKKAIKEEKEK 118
Query: 152 KKKK 155
++
Sbjct: 119 LEEP 122
Score = 27.2 bits (61), Expect = 3.7
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 15/77 (19%)
Query: 99 TQFGTSLYTEWLRNKKKKR------KEKKKKKDKKKKKEEKK---------KEKRKEEKK 143
T F L T++ + ++ ++ K++K K+ K E+ KE+KK
Sbjct: 43 TFFAVMLETDYATKEVFRKNFFKDFRKILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKK 102
Query: 144 KKEEEKKKKKKKKKKKK 160
+E+KK K++K+K
Sbjct: 103 AMSKEEKKAIKEEKEKL 119
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 31.6 bits (72), Expect = 0.081
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 123 KKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
K+ K+K ++KK++K+K++KKKK+ KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 31.6 bits (72), Expect = 0.096
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
E+K K K+K ++KK+K+K++KKKK++ KK KKKK
Sbjct: 97 EQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.4 bits (69), Expect = 0.19
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+ +EK K+K++++KKKK+++KK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 29.3 bits (66), Expect = 0.48
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 129 KKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ K+K K+K++KKKK+++KKKK KK KK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 29.3 bits (66), Expect = 0.50
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K+ KE+ K++K+K++KKKK+++K KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 28.9 bits (65), Expect = 0.66
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKK 145
+ K K K+KK+ KKKKK++KKK +K KKKK
Sbjct: 103 QVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 28.5 bits (64), Expect = 1.1
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKK 145
K+ K+K K KK+KK++KKK+K+K KK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAA 131
Score = 28.1 bits (63), Expect = 1.4
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 130 KEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
EE+K K+ ++K K++++KKKKKKKKKKK +
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTS 127
Score = 27.7 bits (62), Expect = 1.7
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKK 145
K+ +++ K+KK KKKKK++KKK+ K+ KKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 27.0 bits (60), Expect = 2.9
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRK 139
L+ K K++K+KKKKK KKKKK KK K+K
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 26.6 bits (59), Expect = 4.3
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKK 144
++ K++ ++KK+K KKKKK++KK K+ +KKK
Sbjct: 101 VKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 32.2 bits (74), Expect = 0.100
Identities = 17/49 (34%), Positives = 18/49 (36%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
KKKKR E K E K R KK K+ KK KN
Sbjct: 708 KKKKRIELKIFSGDIHFPGETDKISRHSGILIPPGTGKKNSKESKKIKN 756
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 31.7 bits (72), Expect = 0.10
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 112 NKKKKRKEKKKK-----------KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK K K KK + + K EKK +K+K E K+ ++KKK+KKKKKK+
Sbjct: 110 KKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Query: 161 NA 162
+
Sbjct: 170 SP 171
Score = 29.4 bits (66), Expect = 0.57
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
+K KKKK + K++++KKKEK+K++K+ E
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHP 174
Score = 29.4 bits (66), Expect = 0.69
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 90 RFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRK 139
R Q+ L T + + KKK+ E K++ KKKKKE+KKK+KR
Sbjct: 121 RTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKER-KKKKKEKKKKKKRH 169
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 32.5 bits (75), Expect = 0.10
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 107 TEWLRNKKKKRKEKKKKK-------------DKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
+ L+ K + K+ +K D K++ E+ + +K +E++K +E + K
Sbjct: 136 RDHLKKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMK 195
Query: 154 KKKKKKKNALD 164
K + +KK
Sbjct: 196 KLEAEKKKQSK 206
Score = 30.2 bits (69), Expect = 0.47
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+ +K + +K+++D+K KE + K+ E +KKK+ + K+
Sbjct: 171 ELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPV 215
Score = 29.8 bits (68), Expect = 0.63
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
++E +K + +K++++EK ++ E KK E EKKK+ K K+ +
Sbjct: 168 SKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPV 215
Score = 29.4 bits (67), Expect = 0.82
Identities = 13/72 (18%), Positives = 31/72 (43%)
Query: 89 FRFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
F F + + E +K++ EK K+ + K+ + ++K++ + +E
Sbjct: 154 FGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEG 213
Query: 149 KKKKKKKKKKKK 160
+ KK K++
Sbjct: 214 PVQIGKKIDKEE 225
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 32.1 bits (73), Expect = 0.11
Identities = 14/42 (33%), Positives = 30/42 (71%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E+K+++ +K KEE ++E++ EE++++EEEK + + + K
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAK 293
Score = 29.8 bits (67), Expect = 0.66
Identities = 13/59 (22%), Positives = 38/59 (64%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+ ++L +K++ EK K++ +++++ +++ +R+EEK E ++ + K + +K++ L
Sbjct: 245 SFEDFLLEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKL 303
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 32.1 bits (73), Expect = 0.11
Identities = 14/48 (29%), Positives = 35/48 (72%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K KR E+++KK ++++ EE ++++ E+++ K+ EK++ +++KK+
Sbjct: 72 KSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ 119
Score = 30.5 bits (69), Expect = 0.37
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K K K + + K+ +K E KKK E + KK + KK A
Sbjct: 137 AAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKA 187
Score = 30.5 bits (69), Expect = 0.40
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ + K+K + KKK E K K + K +K K +K A
Sbjct: 204 EAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAA 252
Score = 30.2 bits (68), Expect = 0.47
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK + KKK E + +K E KKK E + K + KK A
Sbjct: 161 KKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKA 203
Score = 29.8 bits (67), Expect = 0.55
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K +KK + + KKK + K+K E K + + K +K A
Sbjct: 194 KAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAA 243
Score = 29.8 bits (67), Expect = 0.60
Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 113 KKKKRKEKKKKKD---KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK E KK KKK + E + E KKK E E KKK + KKK A
Sbjct: 168 KKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAA 220
Score = 29.8 bits (67), Expect = 0.64
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 113 KKKKRKEKKKKKD---KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK E KKK + KK E KK+ E K E KKK + + KKK A
Sbjct: 160 AKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAA 212
Score = 29.4 bits (66), Expect = 0.77
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K K E K+ KK + K+K + E KK + KKK + + A
Sbjct: 146 KAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKA 195
Score = 28.6 bits (64), Expect = 1.4
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KK + KKK + K K + K +K K +K K +D
Sbjct: 209 KKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVD 260
Score = 28.6 bits (64), Expect = 1.7
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+K+ + K K K E + ++ KK E KKK + + KK A +
Sbjct: 131 QKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182
Score = 28.6 bits (64), Expect = 1.8
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K+ EK++ +++KK+ ++ K+ K+K+ EE K K K
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Score = 28.2 bits (63), Expect = 1.8
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ ++K+ ++ K K K + E K+ KK + KKK A
Sbjct: 124 AKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEA 173
Score = 27.8 bits (62), Expect = 2.5
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 113 KKKKRKEKKKKKD---KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK E KKK + K E KK+ E KKK E KKK + K A
Sbjct: 176 AKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAA 228
Score = 27.8 bits (62), Expect = 3.0
Identities = 12/55 (21%), Positives = 32/55 (58%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E L+ K+ +E+ K+ +K++ +++K++ +E K+ ++K+ ++ K A
Sbjct: 90 EELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAA 144
Score = 27.8 bits (62), Expect = 3.0
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 113 KKKKRKEKKKKKD----KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KKK E K KK + E KKK + +KK E K K + K A +
Sbjct: 184 KKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAE 239
Score = 27.5 bits (61), Expect = 3.3
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K+ ++++ ++KK+ E+ ++ ++K+ EE K K K A
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEA 151
Score = 27.5 bits (61), Expect = 3.3
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K++ +++KK+ ++ K+ K+K+ EE K K K + + K+ A
Sbjct: 108 KERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAA 157
Score = 27.1 bits (60), Expect = 5.2
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 111 RNKKKKRK-----------EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ +++RK +K+ + ++ K+ EK++ +E+KK+ EE K+ K+K+
Sbjct: 75 KRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQA 134
Query: 160 KNA 162
+ A
Sbjct: 135 EEA 137
Score = 26.3 bits (58), Expect = 9.5
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 113 KKKKRKEKKKKKDKKKKKE--EKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+ KK + KKK E K+ E KKK E E K + KKK
Sbjct: 153 AKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 31.9 bits (73), Expect = 0.11
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
+ +KK EKK KK KK K+E+ + E + +E E + +
Sbjct: 87 IWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEPPLRPR 131
Score = 27.6 bits (62), Expect = 2.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E++ +++ +++ +E + EK E +KK EKK KK KK K
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEE 110
Score = 26.8 bits (60), Expect = 5.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
++ E+ +E+ KE + +KE + +KK +KK K A+
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIK 104
Score = 26.8 bits (60), Expect = 6.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 131 EEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
EE+ KE E++ + E+K +KK KK K D
Sbjct: 75 EEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKD 108
Score = 26.5 bits (59), Expect = 8.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 131 EEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
EE+ +E+ +EE K+ E EK+ + +KK +
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKA 99
>gnl|CDD|192488 pfam10228, DUF2228, Uncharacterized conserved protein (DUF2228).
This is a family of conserved proteins of approximately
700 residues found from worms to humans.
Length = 253
Score = 32.0 bits (73), Expect = 0.11
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
L K K+ KKKK KK +E E KE E++ K K++KKK
Sbjct: 92 LTKKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKK 140
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 31.5 bits (72), Expect = 0.11
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 101 FGTSLYTEWLRNKKKKRKEKKKKKDK---------KKKKEEKKKEKRKEEKKKKEEEKKK 151
F + + ++ + K+ K K K K ++E+KK KEEKK + EK+K
Sbjct: 59 FQKNFFKDFKKVMTKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEK 118
Query: 152 KKKKKK 157
+++
Sbjct: 119 LEEEYG 124
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 32.0 bits (73), Expect = 0.11
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
+ KKKK+K+ KK K KK K+++ R + KK + E+ +KK K
Sbjct: 256 KKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 31.6 bits (72), Expect = 0.12
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
N K +K+KKKKK KK + KK K+ K + + +K +++++ +KK
Sbjct: 250 ANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKI 299
Score = 30.8 bits (70), Expect = 0.28
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+Y + + + KKKK KKKK KK + +K K+++ K KK +++++
Sbjct: 240 MYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRER 294
Score = 30.0 bits (68), Expect = 0.55
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K KKK KKKKK KK K K+ K+ + + K KK +++++
Sbjct: 249 RANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRER 294
Score = 29.7 bits (67), Expect = 0.59
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
KKKK++KKK K+ K KK K++K + K KK
Sbjct: 255 VKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRR 292
Score = 28.5 bits (64), Expect = 1.7
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 113 KKKKRKEKKKKKDKKKKKEEK--KKEKRKEEKKKKEEEKKKKKKKKK 157
K KK+K+KKKK KK K +K K+++ K KK + +++ +KK K
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 32.0 bits (73), Expect = 0.12
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
W + + K + K+K K ++ KEKR++E +++ +E+K+ KKK
Sbjct: 258 AWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
Score = 30.4 bits (69), Expect = 0.38
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ + + + +K + + K K +R +EK++KE E++ K++K+ KKK A
Sbjct: 258 AWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLA 307
Score = 27.7 bits (62), Expect = 2.7
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+ KRK K ++ +K++KE +++ K +++ KKK + + K+ K+
Sbjct: 273 VRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKE 318
Score = 27.4 bits (61), Expect = 4.2
Identities = 18/52 (34%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 111 RNKKKKRKE--KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
RNK+K+RKE ++ K++K+ KK+ + + KE K+ +++K + +KK+++K
Sbjct: 283 RNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRK 334
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 31.1 bits (71), Expect = 0.12
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 10/59 (16%)
Query: 111 RNKKKKRKEKKKKKDKKKKKE----------EKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K + ++K+K+K KKKKKE EKKKE++ + KK EE+K++ +K K+K+
Sbjct: 70 AGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEEDKERVEKMKEKR 128
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 31.3 bits (71), Expect = 0.13
Identities = 9/49 (18%), Positives = 24/49 (48%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+K+ +++ +K+K R +E+K ++ + + K + +LD
Sbjct: 94 GESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVDKSQASLD 142
Score = 26.2 bits (58), Expect = 6.2
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
+ +K E++ K+K +K+++ K+ + ++ K
Sbjct: 97 SADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVDK 136
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 32.1 bits (73), Expect = 0.13
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
N+ K KKKK + + E +EE KK KK +KK
Sbjct: 407 NESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKG 456
Score = 27.1 bits (60), Expect = 5.7
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E K KKKK K + E ++ +E+ KK KK +KK ++
Sbjct: 407 NESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDD---EEDAPKKGKKNQKKGRDK 459
Score = 27.1 bits (60), Expect = 5.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
KK K+ +KK + K + K +KE K +E+
Sbjct: 447 KKGKKNQKKGRDKSSKVPSDSKAGGKKESVKSQEDN 482
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 32.0 bits (73), Expect = 0.13
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEE--------EKKKKKKKKKKKKNA 162
N K+ K + K K+++K + + E+ +K+K +K K K+ A
Sbjct: 217 NINKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKA 275
Score = 28.1 bits (63), Expect = 2.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
N K KE++K D + E+ + +K+K E+ K K+K KK
Sbjct: 231 NNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKK 277
Score = 26.6 bits (59), Expect = 6.9
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 9/61 (14%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK---------KKKKKKKNA 162
K K+ K++K+ + KEE+K + + + K+K +K
Sbjct: 211 IKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKD 270
Query: 163 L 163
L
Sbjct: 271 L 271
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 31.4 bits (72), Expect = 0.14
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEEKKK---EKRKEEKKKKEEEKKKKKKKKKKKKN 161
L E + +++K + +K+ + + K E +K E+R+ E+K+ +E KK+ ++ K+
Sbjct: 125 LEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQNQQLKS 184
Query: 162 ALD 164
L+
Sbjct: 185 QLE 187
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 31.3 bits (71), Expect = 0.15
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKK-EKRKEEKKKKEEEKKKKKK 154
+ W K+ K KK K K KK +K E K+ + + E +KK
Sbjct: 103 FEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 30.7 bits (70), Expect = 0.15
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K + E K+EK+K K+KKEEEK++K++ K++KK A
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKA 127
Score = 30.3 bits (69), Expect = 0.22
Identities = 15/39 (38%), Positives = 29/39 (74%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
+ E ++ K +KKK+ ++KKE+ KE K++ +++KKK K +
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 30.3 bits (69), Expect = 0.22
Identities = 15/39 (38%), Positives = 30/39 (76%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
K + + K++K+++ KEK++EEK++K + K++KKK K +
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 27.6 bits (62), Expect = 1.6
Identities = 10/34 (29%), Positives = 26/34 (76%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKK 143
++KK++ K+KK+++K++K + K++K+K + +
Sbjct: 97 RNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 31.6 bits (72), Expect = 0.19
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 112 NKKKKRKEKKKKKDKKKKK-------EEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
N+ K + K KK K K E K+ ++ KKKKK +K + A
Sbjct: 868 NENKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEEA 925
Score = 28.5 bits (64), Expect = 1.8
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKK-------KKEEEKKKKKKKKKKKKNAL 163
+N + + E + K+ KK + K K K++E+ KKKKK +K +
Sbjct: 865 QNINENKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEE 924
Query: 164 D 164
Sbjct: 925 A 925
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 30.5 bits (69), Expect = 0.21
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ ++ ++K+ K KK++++KKEK+ EK K++ K K KK
Sbjct: 99 QKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKK 149
Score = 29.3 bits (66), Expect = 0.52
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+K++K+ K+ EEK+ K K+EKK+K+E+K +K KKK
Sbjct: 95 SEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKST 136
Score = 29.3 bits (66), Expect = 0.53
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+K++KE K+ ++K+ + KK++K K+EKK E+ KKK K K
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTT 143
Score = 28.6 bits (64), Expect = 1.1
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
E+ +K+ K+ KE ++KE K +K+KKE+++KK +K KKK+
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTK 137
Score = 28.2 bits (63), Expect = 1.3
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+K +++ K+ ++K+ + KKEK+++++KK E+ KKK K K
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTT 143
Score = 27.8 bits (62), Expect = 2.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
++K+ + KK+K +KK+K+ +K +K+ K + KK KK KK
Sbjct: 106 TEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEE 156
Score = 27.4 bits (61), Expect = 2.6
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+K+ K KK+KK+KK+KK +K K+K K K KK KK KK+
Sbjct: 108 EKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEG 157
Score = 26.6 bits (59), Expect = 5.5
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+L+ E ++K+ ++ ++K+ K K+EKK++K K+ +K ++K K K KK
Sbjct: 89 NLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKK 145
Score = 26.3 bits (58), Expect = 6.8
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K +KEKK+KK+KK ++ KK+ K K ++ KK KK++ K
Sbjct: 111 AIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEGK 158
Score = 25.9 bits (57), Expect = 9.7
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ K K++KK+K +KK E+ K+K + K ++ KK KK++
Sbjct: 110 EAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEGK 158
>gnl|CDD|185768 cd09245, BRO1_UmRIM23-like, Protein-interacting, Bro1-like domain
of Ustilago maydis Rim23 (PalC), and related domains.
This family contains the Bro1-like domain of Ustilago
maydis Rim23 (also known as PalC), and related proteins.
It belongs to the BRO1_Alix_like superfamily which
includes the Bro1-like domains of mammalian Alix
(apoptosis-linked gene-2 interacting protein X),
His-Domain type N23 protein tyrosine phosphatase
(HD-PTP, also known as PTPN23), RhoA-binding proteins
Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as
PalA) from Saccharomyces cerevisiae, and related
domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23
interact with the ESCRT (Endosomal Sorting Complexes
Required for Transport) system. Rim20 and Rim23
participate in the response to the external pH via the
Rim101 pathway. Through its Bro1-like domain, Rim23
allows the interaction between the endosomal and plasma
membrane complexes. Bro1-like domains are
boomerang-shape, and part of the domain is a
tetratricopeptide repeat (TPR)-like structure.
Intermediates in the Rim101 pathway may play roles in
the pathogenesis of fungal corneal infection during
Candida albicans keratitis. This family lacks the
V-shaped (V) domain found in many members of the
BRO1_Alix_like superfamily.
Length = 413
Score = 31.2 bits (71), Expect = 0.21
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 109 WLRNKKK------KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK--KKKKKKKKKK 160
WLR KK K KK +EK+++++ E+ EEE + + KK KK
Sbjct: 318 WLRAAKKELEDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELRTLEMLLKKYKKM 377
Query: 161 N 161
N
Sbjct: 378 N 378
Score = 26.2 bits (58), Expect = 8.8
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEK---RKEEKKKKEEEKKKKKK 154
E L++ + K KK K+K+E++K EK +EE + E KK KK
Sbjct: 327 EDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELRTLEMLLKKYKK 376
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 29.9 bits (68), Expect = 0.22
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 128 KKKEEKKKEKRKEEKKKKEEE 148
EEKK+E+ +EE+K++ EE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEE 95
Score = 27.2 bits (61), Expect = 2.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEE 148
+E+K++E+ +EEK++ EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
Score = 25.7 bits (57), Expect = 7.6
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEE 141
++ K++++EE++KE+ +EE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 31.1 bits (70), Expect = 0.22
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K E K + ++ ++ ++ E+ K E++ +K KK KK K KKN LD
Sbjct: 302 DKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLD 352
Score = 28.8 bits (64), Expect = 1.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
R K + K + ++ + E+ +E++ EE+ ++ KK KK K KK
Sbjct: 300 REDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN 349
Score = 28.0 bits (62), Expect = 2.6
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ L + + E ++ +D ++ +EEK +E+ KK K+ +K K KK K ++
Sbjct: 302 DKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDS 358
Score = 27.6 bits (61), Expect = 3.5
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 102 GTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
G + + + + ++ + KD K K E E +E K E+ ++K KKKKKK
Sbjct: 189 GPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKL 248
Query: 162 AL 163
A
Sbjct: 249 AK 250
Score = 26.5 bits (58), Expect = 7.5
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
N ++R++K + K + E+ ++ + E++K EEE KK KK KK
Sbjct: 295 NDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKL 344
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 30.4 bits (69), Expect = 0.22
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
R K K++ + K K KK++ E++K+++ + K E EK++ + +KKK
Sbjct: 65 RKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKK 112
Score = 30.0 bits (68), Expect = 0.27
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
KK K K ++ K KK++ EK+KEK + K E +K++ + +KKK
Sbjct: 66 KKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKK 112
Score = 28.1 bits (63), Expect = 1.4
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+ K+ + +KK K+K ++ + K K++ E++K+KEE K + +K++ L
Sbjct: 58 ESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAEL 108
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 31.0 bits (70), Expect = 0.22
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ KK K+ + K K K +K K+K + + + K K
Sbjct: 146 EVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 30.6 bits (69), Expect = 0.34
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E K+ K KK + K + K +K KK+ + K
Sbjct: 143 EAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGID 184
Score = 28.7 bits (64), Expect = 1.3
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
KK +K + K K K ++ KK+ + K + K K
Sbjct: 146 EVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 27.5 bits (61), Expect = 3.2
Identities = 10/43 (23%), Positives = 14/43 (32%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
K + K K K KK KK+ + + K K
Sbjct: 150 PKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 27.2 bits (60), Expect = 4.4
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK--KKN 161
+ K+ K+ KK + K K K K+ +K+ K + K K+
Sbjct: 141 PPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKS 193
Score = 26.8 bits (59), Expect = 5.8
Identities = 12/48 (25%), Positives = 16/48 (33%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
KK K+ + K K K+ KKK K + K K
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 30.3 bits (69), Expect = 0.23
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 10/60 (16%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEK------KKEKRKEE----KKKKEEEKKKKKKKKKKKK 160
RNK + + K K+K KKKKKE + +EK+KEE +KK EE+KK+ ++ K +K
Sbjct: 68 RNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEEDKKRIEQLKAARK 127
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 30.8 bits (70), Expect = 0.23
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 75 RSRDLITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKK------- 127
R R+++T ++ + R P S LR +K+KE+++++ ++
Sbjct: 80 RLRNILTKLIVLSRHRRDGIKSDPNYEIRSDVRRQLRFLAQKQKEEEERRVERRRELGLE 139
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKK 152
++ + K+K KEE+K + EE + +
Sbjct: 140 DPEQLRLKQKAKEEQKAESEETRHR 164
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 30.6 bits (69), Expect = 0.23
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKE 140
KK+K K KK K KK+E KK+ R+
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 29.8 bits (67), Expect = 0.45
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 123 KKDKKKKKEEKKKEKRKEEKKKKEEE 148
KK K K K+ K K K+ E+KKK E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 28.6 bits (64), Expect = 1.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 130 KEEKKKEKRKEEKKKKEEEKKKKK 153
K++K K K+ + K KK+E+KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 28.3 bits (63), Expect = 1.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEK 137
KKK+ + KK K K KK E+KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.1 bits (60), Expect = 4.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++K EK+K+ K KK + K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 31.3 bits (71), Expect = 0.25
Identities = 14/54 (25%), Positives = 34/54 (62%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
E L +K+ ++K + +K K++EK K++ ++E ++ +E ++ KK + +K+
Sbjct: 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQ 571
Score = 26.3 bits (58), Expect = 8.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E L+ KK+ E ++ K+KK + K+ K E+ K +E K+K +K +
Sbjct: 570 AQEALKALKKE-VESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQKPTNFQ 623
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 30.4 bits (69), Expect = 0.27
Identities = 10/47 (21%), Positives = 25/47 (53%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
KK E +++ + +K+ +E+KK ++ K+K ++++ K
Sbjct: 33 KKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQ 79
Score = 26.2 bits (58), Expect = 7.2
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKK----EEEKKKKKKKKKKKK 160
T++L+ + + KE +++KK +K KEK ++E+ K E + K KK+
Sbjct: 40 TDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKATKKQ 97
>gnl|CDD|225651 COG3109, ProQ, Activator of osmoprotectant transporter ProP [Signal
transduction mechanisms].
Length = 208
Score = 30.6 bits (69), Expect = 0.29
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKK--KEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ K R + ++ + + KK+EE EK E+ K K +++ D
Sbjct: 105 EAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREEVHTPVSD 158
>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional.
Length = 307
Score = 30.9 bits (70), Expect = 0.29
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K + RK+ ++ K K K RK+ + + KKKKK +NA
Sbjct: 252 KPRLRKQIAEEFAKNPPKAYKSPSGRKDVTPSQNQAIASLPKKKKKNRNA 301
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 30.8 bits (70), Expect = 0.29
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 134 KKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
++ K+K+E +KK+KKKK KK K
Sbjct: 348 ERPLALSPKRKREGDKKQKKKKSKKLKLT 376
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 30.8 bits (70), Expect = 0.30
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
Y N+K+K KK+ K++E + E KK ++++ K + K
Sbjct: 351 YEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIK 403
Score = 27.7 bits (62), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 106 YTEWLRNKKKKRKEKKKKK-----DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
E KK+ K+K+ + + KK ++E+ K E K EE K+ + K+K+
Sbjct: 360 RKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRLENGKQKR 417
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 30.6 bits (69), Expect = 0.32
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKK--------KKEEKKKEKRKEEKKKKEEEKKK---K 152
S + E LR + + K+K ++ +K K+ K EKR+ E KK++ E+ K
Sbjct: 8 SAWEEELRKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELS 67
Query: 153 KKKKKKKKNALD 164
KKKKK KK +D
Sbjct: 68 KKKKKFKKEKVD 79
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 30.6 bits (69), Expect = 0.32
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 22/68 (32%)
Query: 109 W-LRNKKKKR--------KEKKKKKDKKKKKEEKKK-------------EKRKEEKKKKE 146
W LRN ++R E + + + + +E KK ++ K K +E
Sbjct: 535 WSLRNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEE 594
Query: 147 EEKKKKKK 154
EE K K
Sbjct: 595 EEAALKMK 602
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 30.7 bits (70), Expect = 0.37
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKE-------------KRKEEKKKKEEEKKKKKKKK 156
LR K K ++K + +++ +E K +EE K+E E+ KK + +
Sbjct: 218 LRTVKPPPKPPMTPEEKDDEYDQRVRELTFDRRAQPTDRTKTEEELAKEEAERLKKLEAE 277
Query: 157 KKK 159
+ +
Sbjct: 278 RLR 280
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 30.0 bits (68), Expect = 0.40
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
R KKKKR + K K+ KKK++K K K KKK ++
Sbjct: 83 RLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAP 131
Score = 29.7 bits (67), Expect = 0.57
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
L+ +++ +K+K+ K K+ +KKK+K K + + KKK ++ A
Sbjct: 78 LQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWA 130
Score = 29.3 bits (66), Expect = 0.84
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ +++ + KKKK+ K K +E K+K+K++ + K + KKK +
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSE 125
Score = 27.0 bits (60), Expect = 4.8
Identities = 15/49 (30%), Positives = 16/49 (32%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
R K K KE KKK KK K + KKK E
Sbjct: 89 RVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSP 137
Score = 27.0 bits (60), Expect = 5.2
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+K+ ++E++ KK KK+ K + KE K++KKK K K + K
Sbjct: 74 GEKELQREERLKK-KKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPK 121
Score = 26.6 bits (59), Expect = 6.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E R ++ K+K++ K K K+ ++KKK+ K K + KKK ++
Sbjct: 77 ELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISW 129
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 30.4 bits (69), Expect = 0.40
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
KKK ++ ++K+ + ++ E+ E+RKE K EE +KK + +K+
Sbjct: 319 KKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKR 364
Score = 26.9 bits (60), Expect = 5.1
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
TE L K + K+ + + EE+++ K+K +K +E+EK+ ++ ++
Sbjct: 289 TEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQN 339
Score = 26.9 bits (60), Expect = 6.4
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 113 KKKKRKEKKKKKDK---KKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+++R+ KKK +K K+K+ E+ ++ EE+K+ + ++ +KK + + L
Sbjct: 312 NEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRL 365
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 29.6 bits (67), Expect = 0.41
Identities = 18/49 (36%), Positives = 39/49 (79%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KRK++++KK +++ KE++++E+ +E K+ +EE K++ +K+ K++K AL
Sbjct: 29 KRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALK 77
Score = 26.1 bits (58), Expect = 6.9
Identities = 15/50 (30%), Positives = 39/50 (78%), Gaps = 2/50 (4%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRK--EEKKKKEEEKKKKKKKKKK 158
+K++R++K +++ K+K++EE+ +E+++ EE+K++ E++ K++K+ K
Sbjct: 28 HKRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALK 77
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 30.2 bits (68), Expect = 0.42
Identities = 11/39 (28%), Positives = 27/39 (69%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ ++K E+++ +RK+ K K E ++K K++ K++ A++
Sbjct: 7 RAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIE 45
Score = 28.7 bits (64), Expect = 1.7
Identities = 10/36 (27%), Positives = 26/36 (72%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
R+ ++K + ++++++++ K K + E+K KEE K++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQR 41
Score = 27.9 bits (62), Expect = 2.7
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEE 147
E R ++K +E++++K + K K E+++ K KEE K+ E
Sbjct: 4 ELRRAREKLEREQRERKQRAKLKLERER-KAKEEAAKQRE 42
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 30.2 bits (68), Expect = 0.42
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
R+ ++KK + KKE + +E K+K KKKK KKKK K+ L
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQK---KKKKDKKKKSPKSLL 107
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 30.1 bits (68), Expect = 0.45
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
K +++K+ + E+ KK++ E KKKKE E+ K +KK
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 29.3 bits (66), Expect = 0.80
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
K EK+ + ++ KKKE+ + +KKK+ EE K +KK
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 28.6 bits (64), Expect = 1.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
E +K+ + E+ K+K + E KKK+E ++ K +KK
Sbjct: 75 EDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 27.8 bits (62), Expect = 2.3
Identities = 12/47 (25%), Positives = 29/47 (61%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
++L ++K + +++ + ++ +KK+E ++KK+ EE K +KK
Sbjct: 67 DFLSDQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 26.2 bits (58), Expect = 8.0
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
+ E+ KKK++ + K++K+ E+ K +KK ++ K+K+
Sbjct: 81 SASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 30.3 bits (69), Expect = 0.45
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 92 QEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
+E LL + L E R K++R E ++ + + ++EE +++ E KKEE +K
Sbjct: 50 KEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETL-DRKMESLDKKEENLEK 108
Query: 152 KKKKKKKKKNALD 164
K+K+ K+ LD
Sbjct: 109 KEKELSNKEKNLD 121
Score = 27.6 bits (62), Expect = 3.0
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
++K + +KK++ +KK+KE KEK +EK+++ EE +++++
Sbjct: 93 DRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREE 137
Score = 26.8 bits (60), Expect = 6.2
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 111 RNKKKKRKEKK---------KKKDKKKKKEEK--KKEKRKEEKKKKEEEKKKKKKKKKKK 159
R + +R E++ +K + KKEE KKEK K+K +EK+++ ++ +
Sbjct: 74 RRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAE 133
Query: 160 KNA 162
+
Sbjct: 134 QRE 136
Score = 26.4 bits (59), Expect = 7.9
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+ K+ ++ KK+ E KKE E K++ + + + +++ K+++N L
Sbjct: 29 SAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNEL 78
Score = 26.4 bits (59), Expect = 8.9
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKK-KEKRKEEKKK------KEEEKKKKKKKKKKKKNALD 164
KK+ E K++ K + + E++ KE+R E ++ +EE +K + KK+ L+
Sbjct: 48 LKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLE 107
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 29.7 bits (67), Expect = 0.45
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ +++K + ++E K ++EE +K ++ KK KK +
Sbjct: 84 VNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 29.3 bits (66), Expect = 0.57
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K + +EEK + +++ K ++EE +K +K+ KK K A
Sbjct: 74 VGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKA 124
Score = 26.2 bits (58), Expect = 6.8
Identities = 10/48 (20%), Positives = 25/48 (52%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K K + + + E++K + ++E K ++++ +K +K+ KK
Sbjct: 73 KVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKK 120
>gnl|CDD|223348 COG0270, Dcm, Site-specific DNA methylase [DNA replication,
recombination, and repair].
Length = 328
Score = 30.1 bits (68), Expect = 0.46
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 67 NVKGF--EGSRSRDLITSMLTRAGFRFQEFLLSPTQFGTS-----LYT-EWLRNKKKKRK 118
NVKG ++ D I L G+ + +L+ +G ++ + R+
Sbjct: 116 NVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDP 175
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
+KK K+ K + + E
Sbjct: 176 NVLPPLPLGRKKTLKEALKNNDLPETDELYL 206
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 29.6 bits (67), Expect = 0.48
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+KRKE+ KKK K K ++ +++ K + KK
Sbjct: 157 EKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 28.1 bits (63), Expect = 2.0
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K D K EEK+KE+ KKK + +K K+ +KK L
Sbjct: 147 KYADVVAKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKL 188
Score = 27.7 bits (62), Expect = 2.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
E R ++ KKK K +K KE +KK K K KK
Sbjct: 156 EEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 30.0 bits (67), Expect = 0.50
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KE KK + ++K +EEK E+K +K++K KK ++
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKT---EKKVRKRRKVKKMDEDVE 151
Score = 29.2 bits (65), Expect = 1.0
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+K+ KK ++ + + E++K E++ +K++K KK ++ D
Sbjct: 107 DKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVED 152
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 30.3 bits (68), Expect = 0.50
Identities = 12/53 (22%), Positives = 35/53 (66%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E + ++ ++++++ + K++ EK++E + K+ +EE+K+KK ++++ K
Sbjct: 238 ERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELK 290
Score = 29.6 bits (66), Expect = 0.86
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
KK++ K+ ++ + + +E + +E K KE+ KK + + K+K L
Sbjct: 172 KKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLEL 222
Score = 27.6 bits (61), Expect = 3.5
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
L +K +EK K+ +K+ KK EK+ +K KEE ++ E+E K+ + K++ ++
Sbjct: 306 LERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEE 358
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 30.1 bits (68), Expect = 0.51
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++ ++K ++KEK+KEE K KEE+++ + +K+ K+
Sbjct: 337 PNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 29.7 bits (67), Expect = 0.74
Identities = 9/55 (16%), Positives = 30/55 (54%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ + ++ ++K +++++K+E+ K +EEK++ + +K+ K ++
Sbjct: 330 IATRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELME 384
Score = 26.7 bits (59), Expect = 7.9
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
+N ++K+KKK++ K KEEK+++ E++ K+ E+ K+K
Sbjct: 347 KNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389
>gnl|CDD|217483 pfam03305, Lipoprotein_X, Mycoplasma MG185/MG260 protein. Most of
the aligned regions in this family are found towards the
middle of the member proteins.
Length = 237
Score = 29.7 bits (67), Expect = 0.51
Identities = 15/55 (27%), Positives = 19/55 (34%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
L K K + K KE K E + + K E K K K +AL
Sbjct: 178 NLLGKFTLDKNSLTSPEVKAFKEADKSEDPQTDSKTIELYKDKIPTDKNAGVDAL 232
>gnl|CDD|236831 PRK11052, malQ, 4-alpha-glucanotransferase; Provisional.
Length = 695
Score = 30.2 bits (69), Expect = 0.53
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 11/51 (21%)
Query: 15 GLQKDIADARCTALSYLIE-----TIPANFPGDRLDHYTTQAVKGWKRKLS 60
GLQ+ +AD+ L E P N PG T+ W+RKLS
Sbjct: 622 GLQRYVADSNSALLGLQPEDWLDMAKPVNIPG------TSDEYPNWRRKLS 666
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 29.1 bits (66), Expect = 0.53
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K K K +KK ++KK E +K K E+K + E +K +K+ ++ +
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEA 63
Score = 28.8 bits (65), Expect = 0.68
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K++ + +KK+++KK + EK + EEK + E EK +K+ ++ + + A
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELA 66
Score = 28.0 bits (63), Expect = 1.4
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K KE K K+K K EKK+E++K E +K + ++K + + +K
Sbjct: 5 EKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEK 53
Score = 26.5 bits (59), Expect = 4.9
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ +KK+ ++K + + K E+K E E+ +K+ EE + + +++ K A
Sbjct: 23 KWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKK 76
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 30.0 bits (68), Expect = 0.55
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K K K K +EK K ++ KK + K+ + K + L
Sbjct: 453 DKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKLQEIL 503
Score = 28.9 bits (65), Expect = 1.2
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K+ K K K+K K +E+ K +K KK K+
Sbjct: 445 KEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKE 491
Score = 27.3 bits (61), Expect = 3.8
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K+ EK KDK K + ++K + +K KK K
Sbjct: 445 KEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFET 494
Score = 27.3 bits (61), Expect = 4.7
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKE--EEKKKKKKKKKKKKNALD 164
L + + K K K KK + KE + K +E E+ K +K +K +D
Sbjct: 465 LLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKLQEILEKVDSKSEKLEKISAKID 521
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 29.9 bits (67), Expect = 0.55
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 80 ITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKE 136
+T ++ + G L + F S W ++K K KKK K KK KK++ K+E
Sbjct: 174 LTLIVVKPGIWIFPNLFADVGFLDSFKPLWGWHEKDKYSYKKKLKSKKLKKKQAKRE 230
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 29.9 bits (68), Expect = 0.55
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
L+ K K EK ++K +++++EE + + +EE++ +EE+K+K K K +
Sbjct: 5 LKEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIK 59
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 30.0 bits (68), Expect = 0.56
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
T + R KKK +K+ +K+ + +KRKE + E+++
Sbjct: 80 TTYFREKKKYKKDVEKRNRSYR---LYLDKKRKELQALSEKQRH 120
Score = 30.0 bits (68), Expect = 0.59
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
++KKK KK ++ + + +KK+KE + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 28.8 bits (65), Expect = 1.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
++K K KK EK+ + KK +E + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 26.9 bits (60), Expect = 6.8
Identities = 9/40 (22%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEEKKKKK--KKKKKKKNALD 164
++KK+ KK +++ + +KK+K+ +K+++ L
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLH 123
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 29.9 bits (68), Expect = 0.57
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
++RKE ++ KK+ E + E + ++ +K
Sbjct: 53 PLEERKEVGALINELKKEVEDAITELTPELEAAGLWERLAFEK 95
Score = 27.6 bits (62), Expect = 3.5
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
KK + KK K EE+K+ + KKE E + + + L
Sbjct: 37 KKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTPELEAAGL 87
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 30.0 bits (68), Expect = 0.58
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ + KR E K+ K K +++ K E+ K+E K+ +EE + K + L
Sbjct: 46 IEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQ 100
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 29.6 bits (67), Expect = 0.58
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ K KK+ KKK+K K+ E KE RK E++ ++ KK K
Sbjct: 19 KQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPGK 65
Score = 29.6 bits (67), Expect = 0.61
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
KK+K ++ + ++ K K++ KKK+K K+
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKR 38
Score = 26.9 bits (60), Expect = 5.4
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
++ + K+ K KKK ++K+K K + +E +K +++ + K+ A
Sbjct: 9 ARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLA 60
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 29.8 bits (68), Expect = 0.61
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
L K K+ + K ++EE +KE+ K E +++ + + ++ + ++ A
Sbjct: 20 LLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEA 72
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 29.8 bits (67), Expect = 0.64
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 111 RNKKKKRKEKKKKKDKKKKKE----EKKKEKRKEEKKKKEEEKKKKKKKKK 157
+ KKKK KEKKKKK+++ K+ E +E + +K E + K +KK
Sbjct: 686 KKKKKKSKEKKKKKNREASKQIHALENIEEGIEGSNNEKSSETPQLKLEKK 736
Score = 29.8 bits (67), Expect = 0.66
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKE 136
+KK+K+KK K+ KKKK E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.7 bits (64), Expect = 1.5
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKK 144
+KK KKKK +EKKK+K +E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 27.9 bits (62), Expect = 2.9
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 138 RKEEKKKKEEEKKKKKKKKKKKK 160
RK++KKKK +EKKKKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 27.5 bits (61), Expect = 3.8
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKK 135
++KKK+K+K K+K KKK +E K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
Score = 27.1 bits (60), Expect = 6.1
Identities = 12/28 (42%), Positives = 23/28 (82%)
Query: 137 KRKEEKKKKEEEKKKKKKKKKKKKNALD 164
++K++KKK +E+KKKK ++ K+ +AL+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQIHALE 711
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 29.8 bits (67), Expect = 0.64
Identities = 15/53 (28%), Positives = 19/53 (35%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K + KK K EK K+ K K+ EK+ K KKK
Sbjct: 673 LINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKEIFGDKFTKKK 725
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 30.0 bits (68), Expect = 0.65
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
K KK+ K K+ EE+K KEE K K + +K
Sbjct: 9 SKNALKKRLKAKQAEEEK--AAKEEAKAAAAAAAAKGRSRK 47
Score = 29.6 bits (67), Expect = 0.79
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K K+ K ++ +EEK KEE K K ++
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRS 45
Score = 29.2 bits (66), Expect = 0.90
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
R K K+ +E+K K++ K K + K ++
Sbjct: 16 RLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADD 53
Score = 28.4 bits (64), Expect = 1.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 134 KKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K +K K K+ EE+K K++ K A
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAA 38
Score = 26.9 bits (60), Expect = 6.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E K KK+ + K+ E+ K K++ + K + +K+A
Sbjct: 6 EPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSA 49
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 29.9 bits (67), Expect = 0.66
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K EK K + + K K EKK E EEK E++K K K K A
Sbjct: 201 KAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAA 248
Score = 28.4 bits (63), Expect = 1.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
++KK + K K E K K E KKK EE K ++ K K A
Sbjct: 145 QKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEA 189
Score = 28.0 bits (62), Expect = 2.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K +KK ++ K +E K K + KKK E E K +K K + A
Sbjct: 162 KLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEA 213
Score = 28.0 bits (62), Expect = 2.6
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
++K+ +E +K+ ++K++E++ K E+KKK E K K + K A
Sbjct: 116 QQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKA 165
Score = 27.6 bits (61), Expect = 2.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+K + E + K +KK E +EK EKKK + K K K
Sbjct: 204 AEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAK 250
Score = 27.2 bits (60), Expect = 4.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KKK + K ++ K K E +K+ E + K EK K + + K K
Sbjct: 170 KKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEK 219
Score = 26.8 bits (59), Expect = 5.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KKK + + K +K K E + K K +++ + EEK +KKK K D
Sbjct: 193 KKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKAD 243
Score = 26.8 bits (59), Expect = 6.0
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+K+ + +K+ + ++K++EE+ ++ E+KKK E K K + K K A +
Sbjct: 114 QEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAE 168
Score = 26.8 bits (59), Expect = 6.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K +K K + + K + +KK + E+K E+KK K K K A
Sbjct: 196 AEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAA 247
Score = 26.5 bits (58), Expect = 8.4
Identities = 16/50 (32%), Positives = 35/50 (70%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ KE+ K ++++K+ EE +K+ + E+K+++E+ +K ++KKK + A
Sbjct: 103 LKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAA 152
Score = 26.1 bits (57), Expect = 9.5
Identities = 14/48 (29%), Positives = 36/48 (75%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++ K+ EK++ K ++++K+ ++ EK+ + ++K++EE+ +K ++KKK
Sbjct: 101 ERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKK 148
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 30.0 bits (68), Expect = 0.67
Identities = 9/49 (18%), Positives = 27/49 (55%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+KE+ +++ ++ + + E R + KK+ +E + + ++ ++K L
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 29.8 bits (67), Expect = 0.68
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 22/71 (30%)
Query: 112 NKKKKRKEKKKKKDKKKKKEE----------------------KKKEKRKEEKKKKEEEK 149
+KK K K+KKK K K ++ +K K K EK KK+
Sbjct: 72 SKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITV 131
Query: 150 KKKKKKKKKKK 160
K KKKKK
Sbjct: 132 NKSTNKKKKKV 142
Score = 28.6 bits (64), Expect = 1.7
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
L K K + EK KKK K KKK+K K + + K K
Sbjct: 114 LMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 29.7 bits (67), Expect = 0.68
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKK 143
K K K K K K KK +E+ K+E + E +
Sbjct: 97 PKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 29.3 bits (66), Expect = 0.76
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
K + K K K K + K K+ EE+ K+E + + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 27.7 bits (62), Expect = 2.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K + + K K K K + KK EE+ K++ K + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 27.3 bits (61), Expect = 3.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
K + K K K K K K KK E++ + + K E +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 27.3 bits (61), Expect = 3.7
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
+ K K K K K K KK E++ ++ + + +
Sbjct: 96 EPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPAS 130
Score = 26.2 bits (58), Expect = 7.9
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K+ K E + + K K + + KK +++ K+
Sbjct: 86 KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKR 119
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 29.5 bits (67), Expect = 0.68
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ +R E K+ + K+ E E+ E K+ +E+ K+ + + + LD
Sbjct: 49 QAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELD 99
Score = 29.5 bits (67), Expect = 0.73
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 107 TEWLRNKKKKR-KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
E L+ ++ + KE + + + E+ + KE K+K +E + + + + L
Sbjct: 45 LEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLL 102
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 29.7 bits (67), Expect = 0.76
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ +K + KK E+ +E+ EE K ++KK+KKK+ +K
Sbjct: 398 SAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 28.9 bits (65), Expect = 1.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRK----EEKKKKEEEKKKKKKKKKKKK 160
+ + KE + K EK + K+ E+ +E K KKKK+KKK+
Sbjct: 385 QLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKE 436
Score = 28.5 bits (64), Expect = 1.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E K +K + ++ +E R+E ++ + KKKK+KKK+
Sbjct: 392 AIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWF 438
Score = 28.5 bits (64), Expect = 1.6
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K +K + KK EE ++E +E K + KKK+KKK+ +K
Sbjct: 398 SAKTALEKAEGKKAIEEIREELIEEGLLKSK--KKKRKKKEWFEK 440
Score = 27.4 bits (61), Expect = 4.2
Identities = 12/47 (25%), Positives = 30/47 (63%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++ + ++ + +KK ++E KK + K EK++ E E+ +K ++ ++K
Sbjct: 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 26.6 bits (59), Expect = 6.7
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
K+ E +KK +K+ KK E K EK+++E ++ E+ ++ ++K
Sbjct: 279 KIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
>gnl|CDD|181988 PRK09609, PRK09609, hypothetical protein; Provisional.
Length = 312
Score = 29.2 bits (66), Expect = 0.78
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 58 KLSGIFRTPNVKGFEGSRSRDLITSMLTRAGFRFQEFL-LSPTQFGTSLYTEWLRNKKKK 116
K++G P V F G S DLI+ + + L F + + KK
Sbjct: 48 KITGFIFGPIVGFFTGLLS-DLISFLFVPGVYHPYYTLAAMVYGFIPGIVGWFFFKFGKK 106
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK-----KKKKN 161
K+ + + K K+KE+ + EK +K K+K KKKK
Sbjct: 107 FFGKESRIKRYDNKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKK 156
Score = 26.9 bits (60), Expect = 5.2
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 89 FRFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRK----EEKKK 144
F+F + FG + NK K+KE+ + E+ +K K+K E+KKK
Sbjct: 101 FKFGKKF-----FGKESRIKRYDNKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKK 155
Query: 145 KEEEKKKKKK 154
K E+ ++K
Sbjct: 156 KLEKTNEEKS 165
Score = 26.5 bits (59), Expect = 6.4
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK------KKKKKKKKKKKNAL 163
K+ + K K K+K++ + E EK +K ++K KKKK +K ++ +L
Sbjct: 109 GKESRIKRYDNKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKKLEKTNEEKSL 166
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 29.4 bits (67), Expect = 0.79
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 101 FGT--SLYTE---WLRNKKKKRKEKKKKKDKKKKKEEK 133
GT S++ WL +K++ K+KKK+K KK + EK
Sbjct: 716 VGTYSSIFIAAPLWLDLEKRRLKKKKKRKKVKKWEVEK 753
Score = 29.0 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEE 141
EK++ K KKK+K+ KK E K E
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
Score = 27.5 bits (62), Expect = 3.7
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 115 KKRKEKKKKKDKKKKKEEKKK 135
+KR+ KKKKK KK KK E +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.5 bits (62), Expect = 4.0
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKE 136
+K+R +KKKK+ K KK E +K E
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 29.6 bits (67), Expect = 0.79
Identities = 9/44 (20%), Positives = 25/44 (56%)
Query: 121 KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K+ ++ + ++ ++ ++EK + EE+K + K++ + LD
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLD 45
Score = 29.2 bits (66), Expect = 0.96
Identities = 7/49 (14%), Positives = 22/49 (44%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+K EK + +++K + + KE+ + + + ++ + + K
Sbjct: 16 RKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAA 64
Score = 26.9 bits (60), Expect = 5.2
Identities = 7/52 (13%), Positives = 22/52 (42%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K K + +K + EE+K E +++ + + + + ++ +
Sbjct: 8 LAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELE 59
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 29.5 bits (66), Expect = 0.81
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKK--KEEEKKKKKKKKKKKKNA 162
K +K K K KK +KK K KK K K KK KK KK
Sbjct: 209 KSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKAL 260
Score = 28.7 bits (64), Expect = 1.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ KK+ K KK K K K+ ++ KK +K K KK KK A
Sbjct: 224 KKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAA 275
Score = 28.3 bits (63), Expect = 2.0
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K +K KK KK K+ K K+ +K K K K K K A
Sbjct: 246 AKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKA 293
Score = 27.9 bits (62), Expect = 2.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K + + KK KKK + +K K + KK KK KK K A
Sbjct: 214 KASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKA 263
Score = 27.9 bits (62), Expect = 2.9
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK +KK K K+ K + +K KK +K KK K KK A
Sbjct: 222 AAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAA 271
Score = 27.5 bits (61), Expect = 3.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K +K K K K+ KK K+ +K K +K KK K K A
Sbjct: 233 KTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAA 282
Score = 27.5 bits (61), Expect = 3.2
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K + KK KK KK ++ K +K KK + K K K K
Sbjct: 243 KTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGK 292
Score = 27.5 bits (61), Expect = 3.6
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK + K KK KK KK K+ + KK +K K K K A
Sbjct: 238 AKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAA 286
Score = 27.2 bits (60), Expect = 4.3
Identities = 16/51 (31%), Positives = 19/51 (37%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
N KK K K KK + K +K KKK + KK K A
Sbjct: 198 NAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKA 248
Score = 27.2 bits (60), Expect = 4.4
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K K+K K KK + K +K +K K+ KK K KK K A
Sbjct: 223 AKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKA 274
Score = 26.8 bits (59), Expect = 6.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K K+ KK K KK ++ K K K + K K K KKK K A
Sbjct: 254 KTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKA 303
Score = 26.4 bits (58), Expect = 7.3
Identities = 15/48 (31%), Positives = 18/48 (37%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K K+ K KK KKK + KK + K KK KK
Sbjct: 208 AKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKT 255
Score = 26.0 bits (57), Expect = 9.8
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K KK +K KK K K+ KK + K K K K K K KKK
Sbjct: 251 KAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKK 298
Score = 26.0 bits (57), Expect = 9.8
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K K+ +K KK KK + KK +K K + K K K K K
Sbjct: 247 KAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAK 296
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 29.6 bits (67), Expect = 0.87
Identities = 14/44 (31%), Positives = 17/44 (38%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E ++ K KK K K +K KK KK KK A
Sbjct: 814 EPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTA 857
Score = 27.7 bits (62), Expect = 3.4
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++ K KK K + K KK +K KK +K
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 29.4 bits (66), Expect = 0.88
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+++ K ++ ++K + + + KK + KK KK KK
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKK 1213
Score = 29.1 bits (65), Expect = 1.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 125 DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
DK+ K E+ +EK + + E KK ++ KK A
Sbjct: 1169 DKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPA 1206
Score = 27.5 bits (61), Expect = 4.1
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
E ++ + KK ++ KK K+ KK E +
Sbjct: 1177 EAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESE 1218
Score = 26.7 bits (59), Expect = 7.8
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
+ K + ++K + + E +K + KK KK KK
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 29.5 bits (66), Expect = 0.89
Identities = 9/43 (20%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ +R+ D+ ++K+++K++ +K + E ++K KK+
Sbjct: 4 RNRREANINNNDRMQEKDDEKQD----QKNRMELKEKVLDKKE 42
Score = 28.4 bits (63), Expect = 1.8
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEE 147
R ++ ++KD +K+ ++ + E +++ KKEE
Sbjct: 7 REANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEE 43
Score = 28.0 bits (62), Expect = 2.5
Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKK-KEKRKEEKKKKEEEKKKKKKKKK 157
N + ++K +K+ +K + KEK ++K++ + K++
Sbjct: 9 ANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQ 56
Score = 27.6 bits (61), Expect = 4.3
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 121 KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ +++ ++ +EK E++ +K + K+K KK+
Sbjct: 4 RNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKE 42
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 29.2 bits (66), Expect = 0.92
Identities = 9/38 (23%), Positives = 24/38 (63%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
KEK + ++ K + + +++ EK+K+EE+ + +++
Sbjct: 202 KEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQER 239
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 29.1 bits (65), Expect = 0.94
Identities = 22/107 (20%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 55 WKRKLSGIFRTPNVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLRNKK 114
+K + ++ E ++ I +L L + L + R +K
Sbjct: 98 LTKKKGKKVKKSILEIVEIDELQEFIDELLKSDKEILPLLLYLGQERLEELKFK--RKEK 155
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K+R E+ +K+ ++ + E+ EK EEK+KK+E ++ K++ ++ +
Sbjct: 156 KERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEE 202
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 29.3 bits (66), Expect = 0.94
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K K K K K K+ K EK E+ + K+ +KKK
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
>gnl|CDD|220191 pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for
Clustered, Regularly Interspaced Short Palidromic
Repeats. A number of protein families appear only in
association with these repeats and are designated Cas
(CRISPR-Associated) proteins. This family is represented
by CT1975 of Chlorobium tepidum.
Length = 353
Score = 29.2 bits (66), Expect = 0.96
Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 38/129 (29%)
Query: 55 WKR--KLSGIFRTPNVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLRN 112
KR + S F EG R++ L + R E
Sbjct: 40 LKRAIRTSEEFAQL--LAEEGVRTKRLAEEVAKRLEQAGVE-----------------EE 80
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKE-----------------EKKKKEEEKKKKKKK 155
K EK KK K+ KK +K E E+ ++ + KK++K
Sbjct: 81 LAKALAEKILGAFGKKLKKGKKSKKETEQLLFLSPEEIAALAQLAEEHAEDLKAAKKEEK 140
Query: 156 KKKKKNALD 164
+KK A+D
Sbjct: 141 LRKKAKAVD 149
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 29.3 bits (66), Expect = 0.96
Identities = 10/57 (17%), Positives = 41/57 (71%), Gaps = 4/57 (7%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKK----EEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E L ++++++ +++++ + + EE ++ +R+E++++K+++K++K+++K+ +
Sbjct: 152 EELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAE 208
Score = 26.9 bits (60), Expect = 4.7
Identities = 9/44 (20%), Positives = 33/44 (75%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
++++++ ++++ E + ++ +E ++++ EEK+++KK+ K++K
Sbjct: 158 RQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQ 201
Score = 26.6 bits (59), Expect = 7.5
Identities = 11/48 (22%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
E RN + ++ ++ ++++++E KE+RK++ K++++ +K+ +K
Sbjct: 165 EQRRNAELAETQRLEEAERRRREE---KERRKKQDKERKQREKETAEK 209
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to 196
amino acids in length.
Length = 149
Score = 28.4 bits (64), Expect = 0.98
Identities = 10/49 (20%), Positives = 24/49 (48%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K+ + K+ +++ K RK K ++++KK K K+ ++ +
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESGI 49
Score = 27.3 bits (61), Expect = 2.4
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+++ + K+ +K+ K ++ K K+++KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 27.3 bits (61), Expect = 2.8
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
RK + + +KK K K K K +++K K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 29.1 bits (66), Expect = 0.99
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
++K+K + E ++ R EE K++++KKKKKKKK++ +
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELRE 104
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 29.4 bits (66), Expect = 1.0
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+WL+ K+K++EK ++K ++ K EE +E +EEK E +K + KK
Sbjct: 274 DWLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKK 325
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 28.9 bits (65), Expect = 1.1
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
NK K K K + + + ++ K+E +KE E ++ K K
Sbjct: 57 NKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAK 104
Score = 27.4 bits (61), Expect = 3.9
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
RKE K +K+ K + KE E + +E KK+ +K+ + + A
Sbjct: 51 SLRKEFNKL-NKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKA 99
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 28.1 bits (63), Expect = 1.1
Identities = 7/22 (31%), Positives = 17/22 (77%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEE 148
+EE+++E+ +EE++++ EE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEE 94
Score = 26.5 bits (59), Expect = 3.8
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEE 148
++EE+++E+ +EE+++ EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 25.8 bits (57), Expect = 6.0
Identities = 4/25 (16%), Positives = 20/25 (80%)
Query: 139 KEEKKKKEEEKKKKKKKKKKKKNAL 163
++++EEE+++++++++ ++ A+
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEEAM 97
Score = 25.8 bits (57), Expect = 7.5
Identities = 5/23 (21%), Positives = 19/23 (82%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEE 141
+++++++++EE+++E+ +EE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 28.6 bits (64), Expect = 1.2
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEE---EKKKKKKKKKKKKNALD 164
L++ + K+ E++K +K+ ++E +++ E + E E +++ K+KK A D
Sbjct: 101 LKDDQTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEKKEAED 158
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 29.0 bits (66), Expect = 1.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
R + +++ K++ E K EEK+KK E+
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 27.1 bits (61), Expect = 4.7
Identities = 6/36 (16%), Positives = 20/36 (55%)
Query: 129 KKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ + +++ +E+ + K+ ++K+KK +K +
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEIT 544
Score = 26.3 bits (59), Expect = 8.7
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 123 KKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
+ D +++ K++ K+ EE++KK +K
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 29.0 bits (65), Expect = 1.2
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
L K + ++E +E ++E +KK++ +KK +K+K
Sbjct: 323 LDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVN 370
Score = 28.6 bits (64), Expect = 1.7
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K K + +E +++ EE K++ E+K+K KKK +K+K
Sbjct: 319 EIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRK 368
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 28.9 bits (65), Expect = 1.3
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKK 144
KK++K++K+K+ K E KKEKRK++K K
Sbjct: 625 GIKKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 28.9 bits (65), Expect = 1.5
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K K KK KKK K +K K + K KKKKKK+K LD
Sbjct: 498 KTTSSVGKSAKKQDSKKKSSSKLDK--AANKISKAAVKVKKKKKKEKSIDLD 547
Score = 27.7 bits (62), Expect = 3.7
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+ KK+D KKK K + + K + KKKKKK+K +
Sbjct: 493 ENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDD 549
Score = 26.9 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
KK+++K+K KR+ K + +K+K+K KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 28.6 bits (64), Expect = 1.3
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KKKK +KKK KK KK++K+KE+ E ++ + ++ ++ KK L
Sbjct: 52 KKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELP 103
Score = 25.9 bits (57), Expect = 9.3
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ KKK+ +KKK KK K++KK+++ E +E ++ ++ KK
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKK 97
>gnl|CDD|219526 pfam07701, HNOBA, Heme NO binding associated. The HNOBA domain is
found associated with the HNOB domain and pfam00211 in
soluble cyclases and signalling proteins. The HNOB
domain is predicted to function as a heme-dependent
sensor for gaseous ligands, and transduce diverse
downstream signals, in both bacteria and animals.
Length = 209
Score = 28.4 bits (64), Expect = 1.4
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
E+ + + K KK+ EK K+K +E ++ EEEKKK
Sbjct: 160 EQARAQLKLKKRLEKLKDKLEEAHRELEEEKKK 192
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 28.5 bits (63), Expect = 1.5
Identities = 16/61 (26%), Positives = 37/61 (60%)
Query: 92 QEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
+E L S G S+ + + K+++ K ++ ++ K EEK+ ++ +EE++ +EE K++
Sbjct: 177 EELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQE 236
Query: 152 K 152
+
Sbjct: 237 E 237
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 28.8 bits (65), Expect = 1.5
Identities = 11/55 (20%), Positives = 30/55 (54%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
L K+++E+ K +++ + ++ EK+ + E +++K++ +KK + L
Sbjct: 190 LERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLR 244
Score = 27.7 bits (62), Expect = 3.7
Identities = 9/48 (18%), Positives = 26/48 (54%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ K +E++ ++ K+K+EE + +E + E ++ +K+ + +
Sbjct: 180 AELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLE 227
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 27.2 bits (61), Expect = 1.5
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 103 TSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
L ++L +++K ++K + K++KK++ +K+ +
Sbjct: 22 DELNKDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGPAS 67
Score = 26.8 bits (60), Expect = 2.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 132 EKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
E+++EK ++K + KKKKK+K KK
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKK 59
Score = 25.3 bits (56), Expect = 8.3
Identities = 9/37 (24%), Positives = 24/37 (64%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
++++++E K++ + K+++K+K KKK+ + A
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGPA 66
>gnl|CDD|227666 COG5374, COG5374, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 28.2 bits (63), Expect = 1.5
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K + +K + +K +E+ + K E +++ +K+ KKK
Sbjct: 149 KARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKKE 192
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 27.6 bits (62), Expect = 1.5
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 135 KEKRKEEKKKKEEEKKKKKKKKKKK 159
KE+++EEK ++EEE K+ K K+++
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREE 25
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 28.4 bits (64), Expect = 1.6
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ ++ KKK +KK+ + K+ +E KK E +K KK+ ++K +
Sbjct: 36 LEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKKRLSEEKSS 91
Score = 26.9 bits (60), Expect = 5.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
LY + + +K+ KE KK+++KK + KK +EE KK + +K KK
Sbjct: 27 ELYDKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKK 83
Score = 26.5 bits (59), Expect = 7.6
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRK---EEKKKKEEEKKKKKKKKKKKKN 161
E L + K+ DKKKK++++ K K EE KK E +K KK+ ++K+
Sbjct: 32 EIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKKRLSEEKS 90
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 28.0 bits (63), Expect = 1.6
Identities = 14/37 (37%), Positives = 27/37 (72%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
KK +K++++ K+ EK E+ KKEEE ++ K++++K
Sbjct: 79 KKNEKEERELRKRAEKEALEQAKKEEELREAKRQQRK 115
>gnl|CDD|240407 PTZ00412, PTZ00412, leucyl aminopeptidase; Provisional.
Length = 569
Score = 28.4 bits (63), Expect = 1.7
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 99 TQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKE 146
FG L ++ R+ K K K KK + KK+ K +K++ +++K+
Sbjct: 523 PGFGVQLLVDYFRHNKPP-KRKGIKKAQNAKKDLKVVQKKRHGRRRKQ 569
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 28.2 bits (63), Expect = 1.7
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
KKKR +K KK ++K KEK EE+KK E + K
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 26.3 bits (58), Expect = 7.4
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
KK+ +K KK KK++K+K +E+K + +++K
Sbjct: 53 KKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 26.3 bits (58), Expect = 8.1
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
++ KKK+ +K KK K+K+++K EEEKK + K ++N
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEEN 93
Score = 26.3 bits (58), Expect = 8.3
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+K KK KK K+K E++K+ ++ K +E E ++
Sbjct: 59 PRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGD 105
Score = 26.3 bits (58), Expect = 8.6
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+K +K KKKDK+K EE+KK + ++K ++ E ++ +
Sbjct: 60 RKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQ 107
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 27.5 bits (61), Expect = 1.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKK 134
+ K KK+K+K KK K KK +K
Sbjct: 92 HPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.2 bits (60), Expect = 2.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKK 143
K K KKKK ++ KK K+ +K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 26.4 bits (58), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 132 EKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+ EK K++KKK ++ KK KK KK
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 26.0 bits (57), Expect = 7.5
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 97 SPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKK 130
S TE + KKKK K+ KK K KK
Sbjct: 87 SHPDDHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 28.4 bits (63), Expect = 1.8
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+K ++ ++ K + KKE+RK ++ +KE E K ++KK KNA
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNA 99
Score = 26.5 bits (58), Expect = 7.4
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
+K +++++ K K KKE +K+++ ++E + K EEKK K
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPK 97
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 28.2 bits (64), Expect = 1.9
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 133 KKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K+ E+ KK E+ +K KKKKK++K + D
Sbjct: 185 KQTEELI--KKLLEKPEKPKKKKKRRKGFSKD 214
>gnl|CDD|187870 cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily
protein Cas6f. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas6f is an endoribonuclease that generates crRNA; This
family is specific for CRISPR/Cas system I-F subtype;
Possesses RRM fold; also known as Csy4 family.
Length = 185
Score = 28.0 bits (63), Expect = 1.9
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
R + K ++ +++ K+ E + EEE + + + + L
Sbjct: 99 SRVQAKSSPERLRRRRLKRGE-------ETEEEARARDIPDTESRTDL 139
>gnl|CDD|153327 cd07643, I-BAR_IMD_MIM, Inverse (I)-BAR, also known as the
IRSp53/MIM homology Domain (IMD), of Missing In
Metastasis. The IMD domain, also called
Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a
dimerization and lipid-binding module that bends
membranes and induces membrane protrusions. Members of
this subfamily include missing in metastasis (MIM) or
metastasis suppressor 1 (MTSS1), metastasis suppressor
1-like (MTSSL) or ABBA (Actin-Bundling protein with
BAIAP2 homology), and similar proteins. They contain an
N-terminal IMD and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus. MIM was originally identified
as a missing transcript from metastatic bladder and
prostate cancer cells. It is a scaffold protein that
functions in a signaling pathway between the PDGF
receptor, Src kinases, and actin assembly. It may also
function as a cofactor of the Sonic hedgehog (Shh)
transcriptional pathway and may participate in tumor
development and progression via this pathway. ABBA
regulates actin and plasma membrane dynamics to promote
the extension of radial glia, which is important in
neuronal migration, axon guidance and neurogenesis. The
IMD domain of MIM binds and bundles actin filaments,
binds membranes, and interacts with the small GTPase
Rac.
Length = 231
Score = 28.2 bits (63), Expect = 2.0
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 80 ITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKR- 138
I S LTR R + QF ++L + L N +++ E+ KK + K+ K+ K+
Sbjct: 69 IGSALTRMCMRHKSIETKLKQFTSAL-MDCLVNPLQEKIEEWKKVANQLDKDHAKEYKKA 127
Query: 139 KEEKKKKEEEKKKKKKKKKKKKNAL 163
++E KKK + + +KK +K K L
Sbjct: 128 RQEIKKKSSDTIRLQKKARKGKGDL 152
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes
the bacterial secreted proteins PopB, PepB, YopB and
EspD which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 28.2 bits (63), Expect = 2.0
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
K K ++ ++ +DK++KK E+ +E+ K+ +K EE KK
Sbjct: 16 QAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKS 55
Score = 27.1 bits (60), Expect = 4.6
Identities = 11/42 (26%), Positives = 27/42 (64%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+K+ + K ++ ++ + +++KK + +E+ KK EK ++ KK
Sbjct: 14 EKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKS 55
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 28.5 bits (63), Expect = 2.0
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
E + K +++ + ++ KK +E +E + EE K+ +E KKKK KK K+
Sbjct: 204 ELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKE 254
Score = 28.5 bits (63), Expect = 2.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ +K + ++D KK E+ ++ K +E K+ E +KKK KK K+ K
Sbjct: 207 VEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTK 257
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 27.9 bits (63), Expect = 2.0
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 119 EKKKKKDKKKKKEEK-KKEKRKEEKKKKEEEKKKKKKKKKK 158
E + + + K + KKEK + + KE E K K+ + +
Sbjct: 64 EAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAES 104
Score = 27.2 bits (61), Expect = 3.3
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 112 NKKKKRKEKKKKKDK-KKKKEEKKKEKRKEEKKKKEEEKKK 151
R E + K + KK+K + E ++ E K KE E +
Sbjct: 64 EAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAES 104
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 28.0 bits (63), Expect = 2.0
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K D KKK+ KK+E+ K+ KKK E K + +KK K
Sbjct: 114 AKHYGIDLGKKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 26.9 bits (60), Expect = 5.2
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
K + KKK KK++E KK +K+ E K E +KK K
Sbjct: 114 AKHYGIDLGKKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 28.2 bits (63), Expect = 2.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+KK+++ KKK K ++ E + E K KK KKKKKK
Sbjct: 236 AEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKK 285
Score = 27.4 bits (61), Expect = 4.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK++ +KK K + ++ + + E K KK KKKKKKK
Sbjct: 235 EAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKK 285
>gnl|CDD|222863 PHA02540, 61, DNA primase; Provisional.
Length = 337
Score = 28.0 bits (63), Expect = 2.0
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
LY E++ ++ KE + K + K K + K+EKK E+ ++
Sbjct: 78 LYREYI---MERFKE---RGTGKGRPVPKPKFEFKKEKKVIEKLPFCER 120
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 28.5 bits (64), Expect = 2.1
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
++K EK+ E+ +EE ++ E E++KK++K
Sbjct: 246 RRKLYGEKRAERVREELREVEREREKKRRKLG 277
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 28.4 bits (64), Expect = 2.1
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
K K+ ++ +KK+E K EEK KKEE+K+K K+++K+
Sbjct: 638 KIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 27.3 bits (61), Expect = 5.0
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 129 KKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+K+++ K E+K K+EEKK+K K+++K+
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 27.3 bits (61), Expect = 5.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK KE + E+R+EE + E + K K++++
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQE 257
Score = 26.5 bits (59), Expect = 7.3
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 110 LRNKKKKRKEKK--KKKDKKKKKEEKKKEKRKEEKK 143
RN +K+KE K ++K KKEEKK++ ++EEK+
Sbjct: 643 FRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 26.5 bits (59), Expect = 9.0
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
+ EKKK+ EEK K++ K+EK K+EE++
Sbjct: 644 RNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
>gnl|CDD|217935 pfam04158, Sof1, Sof1-like domain. Sof1 is essential for cell
growth and is a component of the nucleolar rRNA
processing machinery.
Length = 88
Score = 26.9 bits (60), Expect = 2.1
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 123 KKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
KK +K K+E K+ +KRKEE ++K + K ++KK+ +
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKHVV 88
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM
homology Domain (IMD), a dimerization module that binds
and bends membranes. Inverse (I)-BAR (or IMD) is a
member of the Bin/Amphiphysin/Rvs (BAR) domain family.
It is a dimerization and lipid-binding module that bends
membranes and induces membrane protrusions in the
opposite direction compared to classical BAR and F-BAR
domains, which produce membrane invaginations. IMD
domains are found in Insulin Receptor tyrosine kinase
Substrate p53 (IRSp53), Missing in Metastasis (MIM), and
Brain-specific Angiogenesis Inhibitor 1-Associated
Protein 2-like (BAIAP2L) proteins. These are
multi-domain proteins that act as scaffolding proteins
and transducers of a variety of signaling pathways that
link membrane dynamics and the underlying actin
cytoskeleton. Most members contain an N-terminal IMD, an
SH3 domain, and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus, exccept for MIM which does not
carry an SH3 domain. Some members contain additional
domains and motifs. The IMD domain binds and bundles
actin filaments, binds membranes and produces membrane
protrusions, and interacts with the small GTPase Rac.
Length = 223
Score = 28.1 bits (63), Expect = 2.1
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 100 QFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
Q + + E + +KK + +K +K +K +K+ ++++E+ K E KK +KK +K
Sbjct: 86 QVAKAFHGELILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKS 145
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 27.9 bits (62), Expect = 2.2
Identities = 14/80 (17%), Positives = 38/80 (47%), Gaps = 23/80 (28%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKK-----------------------KEKRKEEK 142
+ + + + +++++++K K+++E+ ++K KEEK
Sbjct: 133 MPQMIADWRAQKRKREQKARAAKERKERLVAEAREHFGYWVDPRDPRFQEMLQQKEKEEK 192
Query: 143 KKKEEEKKKKKKKKKKKKNA 162
KK +E K+++K++K+
Sbjct: 193 KKVKEAKRREKEEKRMAALV 212
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 28.1 bits (62), Expect = 2.3
Identities = 16/53 (30%), Positives = 40/53 (75%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E+ + K+K+++ + ++ KKK+EE++K +EE+++K+EE +K +++++K+
Sbjct: 201 EFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKR 253
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 28.1 bits (63), Expect = 2.3
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
E+ ++ K+ ++ ++K E+ ++ +E+ KKE KK KK
Sbjct: 453 EEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 28.1 bits (63), Expect = 2.6
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 121 KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+ +E ++K + E+ + +E+ KK+ KK KK
Sbjct: 460 VKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 27.0 bits (60), Expect = 6.7
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+ K+ EE +++ ++ ++ E +++ KK+ KK K
Sbjct: 456 KQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVK 498
Score = 26.6 bits (59), Expect = 7.5
Identities = 12/58 (20%), Positives = 29/58 (50%)
Query: 92 QEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
+ L S +F S+ E + ++ +EK ++ ++ + +++ +K +K KK E
Sbjct: 446 EAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503
Score = 26.6 bits (59), Expect = 9.0
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
++ K+ K+ ++ +K ++ E+ + +EE KK+ KK KK +D
Sbjct: 451 SLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVD 504
Score = 26.2 bits (58), Expect = 9.5
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K ++ ++K E+ ++ + +++ K+E KK KK + L
Sbjct: 460 VKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLL 508
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 205
Score = 27.8 bits (62), Expect = 2.4
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+K+ + ++ E++ ++ + K+ K+ + K +KNA
Sbjct: 45 LALVQKEAALEALQRAEQRLQQAAKAKRAKDAAANAAEGKAFLEKNA 91
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 28.0 bits (62), Expect = 2.4
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
L E + K K ++ K + D+ K E++K+KRK KK K KK++K K+K
Sbjct: 534 LLAPEEIYKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKV 591
Score = 27.3 bits (60), Expect = 5.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK K +K K E + + E++KK+ +++ KK K K
Sbjct: 541 YKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKE 583
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 27.2 bits (61), Expect = 2.4
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 8/49 (16%)
Query: 111 RNKKKKRKEKKKKKDKKKKKE--------EKKKEKRKEEKKKKEEEKKK 151
+ K KEK+KKK KKK+ E EKKKE+ E +KK EE+KK+
Sbjct: 69 EAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKKR 117
Score = 25.7 bits (57), Expect = 8.9
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 133 KKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K K R+E + K +EK+KKKKKKK+ ++
Sbjct: 62 KGKTAREEAVEAKAKEKEKKKKKKKELED 90
>gnl|CDD|224073 COG1151, COG1151, 6Fe-6S prismane cluster-containing protein
[Energy production and conversion].
Length = 576
Score = 28.1 bits (63), Expect = 2.5
Identities = 12/63 (19%), Positives = 22/63 (34%)
Query: 102 GTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
G + Y LR + K + K + K+E+K + E + K + +
Sbjct: 88 GAACYAHHLREALRALKATAEGKTPYEIKDEEKLKPLAELLGIDTDGKDINQVAVELAVF 147
Query: 162 ALD 164
L
Sbjct: 148 VLS 150
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 28.0 bits (63), Expect = 2.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
EW+R K K KK K + K +K E R E++ EE K
Sbjct: 265 EWIRRGKAAA--SKAKKAKSRIKRLEKLEARLAEERPVEEGKPLA 307
Score = 26.4 bits (59), Expect = 8.4
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
++K ++ ++ EK++++ +E++ K K KK
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKK 279
Score = 26.4 bits (59), Expect = 8.8
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEE--EKKKKKKKKKKK 159
++K ++ ++E EK+++E K++E + K K KK
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKK 279
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 27.4 bits (61), Expect = 2.5
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 113 KKKKRKEKKKKKDKKK-----KKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ K++ ++ D + KK K +K ++E +KK +E +K++KKK
Sbjct: 93 DQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKK 141
>gnl|CDD|235953 PRK07188, PRK07188, nicotinate phosphoribosyltransferase;
Provisional.
Length = 352
Score = 28.0 bits (63), Expect = 2.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 39 FPGDRLDHYTTQAVKGWKRKLSGI 62
F GDR DHY QA G+ + GI
Sbjct: 134 FMGDRADHYLQQAGDGYAAYIGGI 157
>gnl|CDD|151656 pfam11214, Med2, Mediator complex subunit 2. This family of
mediator complex subunit 2 proteins is conserved in
fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts
with and phosphorylates Med2. Post-translational
modifications of Mediator subunits are important for
regulation of gene expression.
Length = 99
Score = 27.0 bits (60), Expect = 2.6
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 132 EKKKEKRKEEKKKKEEEKKK 151
E KK++ +EE+KKKEEE+KK
Sbjct: 80 ENKKKQEEEERKKKEEEEKK 99
>gnl|CDD|131274 TIGR02219, phage_NlpC_fam, putative phage cell wall peptidase,
NlpC/P60 family. Members of this family show sequence
similarity to members of the NlpC/P60 family described
by pfam00877 and by Anantharaman and Aravind
(PMID:12620121). The NlpC/P60 family includes a number
of characterized bacterial cell wall hydrolases. Members
of this related family are all found in prophage regions
of bacterial genomes [Mobile and extrachromosomal
element functions, Prophage functions].
Length = 134
Score = 27.1 bits (60), Expect = 2.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 52 VKGWKRKLSGIFRTP 66
V W+R+L+G FR P
Sbjct: 120 VPWWRRRLAGAFRFP 134
>gnl|CDD|226145 COG3618, COG3618, Predicted metal-dependent hydrolase of the
TIM-barrel fold [General function prediction only].
Length = 279
Score = 27.7 bits (62), Expect = 2.7
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 44 LDHYTTQAVKG-----WKRKLSGIFRTPNV 68
LDH +K WK L+ + R PNV
Sbjct: 166 LDHCGRPDIKINLEDPWKAALARLARRPNV 195
>gnl|CDD|206307 pfam14138, COX16, Cytochrome c oxidase assembly protein COX16.
This family represents homologues of COX16 which has
been shown to be involved in assembly of cytochrome
oxidase. Protein in this family are typically between
106 and 134 amino acids in length.
Length = 79
Score = 26.3 bits (59), Expect = 2.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
R E++ +K ++ ++EE K +K K EEE + +
Sbjct: 25 RYERRDRKVQQLEEEEALKLLKKRRKVDLEEEYYRLQGL 63
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 28.0 bits (62), Expect = 2.8
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK--KKKKKKKKKKKNA 162
KKK K+ KK KK KK +K+ KK +K +K KK KK A
Sbjct: 991 AMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPA 1044
Score = 27.3 bits (60), Expect = 4.6
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E + +K + KK + KKK +K KK +K KK KKK A
Sbjct: 968 EKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVA 1022
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 27.8 bits (63), Expect = 2.9
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 108 EWLRNKKKKRKEKKKKKD--KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
E + E + + +K K K+ +K ++ ++KK E + + KK K + L
Sbjct: 202 EDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKL 259
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 26.8 bits (60), Expect = 2.9
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 121 KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
K++K KKKKK E + K+EKK+ E++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 25.7 bits (57), Expect = 7.3
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
K++KK KKKK E + ++KE+K+ E+ K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 27.3 bits (61), Expect = 3.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
K + +K+KEK ++ +K+ E +K ++ K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 26.9 bits (60), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEE 147
K + +K+K+K +K +K + EK E K K E
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSKFE 69
Score = 26.5 bits (59), Expect = 6.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 121 KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K D+ K + KKEK K EK +K + +K ++ K K
Sbjct: 28 KAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 25.7 bits (57), Expect = 9.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
R K + K+K+K EK +++ E +K E K K
Sbjct: 33 RAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 28.0 bits (62), Expect = 3.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
K R E K K KKKK KKKE K + +++ ++K
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEK 151
Score = 27.2 bits (60), Expect = 5.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
+N+ + K+KK KK K KK+E K + E++ +E+
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEKP 152
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 27.8 bits (63), Expect = 3.0
Identities = 11/49 (22%), Positives = 16/49 (32%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K K K K + + +E K+K KK + KK
Sbjct: 610 GPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 27.6 bits (62), Expect = 3.2
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 121 KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+K +++++K EKKK EE K+K E+ + ++ + L
Sbjct: 9 EKLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTPEDLS 52
Score = 27.2 bits (61), Expect = 3.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
+K +E++K + KK E+ KEK E + EE +
Sbjct: 8 EEKLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTP 48
Score = 26.8 bits (60), Expect = 4.8
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ E+K +++++K E+KK +E+K+K E + ++ + ++
Sbjct: 4 DETLEEKLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTPED 50
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 27.6 bits (60), Expect = 3.2
Identities = 16/52 (30%), Positives = 36/52 (69%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
L +++K +++K+K +K+ + + K ++EK+K E+EK+K +++K+K N
Sbjct: 151 LEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSN 202
>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10). TC10 is a Rho family
protein that has been shown to induce microspike
formation and neurite outgrowth in vitro. Its
expression changes dramatically after peripheral nerve
injury, suggesting an important role in promoting
axonal outgrowth and regeneration. TC10 regulates
translocation of insulin-stimulated GLUT4 in adipocytes
and has also been shown to bind directly to Golgi COPI
coat proteins. GTP-bound TC10 in vitro can bind
numerous potential effectors. Depending on its
subcellular localization and distinct functional
domains, TC10 can differentially regulate two types of
filamentous actin in adipocytes. TC10 mRNAs are highly
expressed in three types of mouse muscle tissues: leg
skeletal muscle, cardiac muscle, and uterus; they were
also present in brain, with higher levels in adults
than in newborns. TC10 has also been shown to play a
role in regulating the expression of cystic fibrosis
transmembrane conductance regulator (CFTR) through
interactions with CFTR-associated ligand (CAL). The
GTP-bound form of TC10 directs the trafficking of CFTR
from the juxtanuclear region to the secretory pathway
toward the plasma membrane, away from CAL-mediated DFTR
degradation in the lysosome. Most Rho proteins contain
a lipid modification site at the C-terminus, with a
typical sequence motif CaaX, where a = an aliphatic
amino acid and X = any amino acid. Lipid binding is
essential for membrane attachment, a key feature of
most Rho proteins. Due to the presence of truncated
sequences in this CD, the lipid modification site is
not available for annotation.
Length = 174
Score = 27.3 bits (60), Expect = 3.2
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 25 CTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVKGFEGSR 75
C +SY + P + DHY G K+ L G++ T + ++ R
Sbjct: 15 CLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR 65
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 27.2 bits (61), Expect = 3.2
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
KKK K+ K K K+K +EE + E+K+KKK K K
Sbjct: 2 KKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLK 41
Score = 27.2 bits (61), Expect = 3.8
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKK-----------EEEKKKKKKKKKKK 159
+ K ++ K K KKK +EE E R+ ++KKK E + K K + +K
Sbjct: 2 KKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQK 61
Query: 160 K 160
K
Sbjct: 62 K 62
>gnl|CDD|149453 pfam08397, IMD, IRSp53/MIM homology domain. The N-terminal
predicted helical stretch of the insulin receptor
tyrosine kinase substrate p53 (IRSp53) is an
evolutionary conserved F-actin bundling domain involved
in filopodium formation. The domain has been named IMD
after the IRSp53 and missing in metastasis (MIM)
proteins in which it occurs. Filopodium-inducing IMD
activity is regulated by Cdc42 and Rac1 and is
SH3-independent.
Length = 218
Score = 27.4 bits (61), Expect = 3.3
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 100 QFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+F + + E + +KK + KK + K + + +K+++E +KK+ + KK ++K +K
Sbjct: 76 EFFKAFHDELINPLEKKTELDKKYANALDKDYQTEYKKKRDELEKKQSDLKKLQRKSQKG 135
Query: 160 KNAL 163
KN
Sbjct: 136 KNDS 139
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 27.7 bits (61), Expect = 3.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K K + K+K + + E +KK KE KK K +KK KNA
Sbjct: 261 ALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAA 308
Score = 26.5 bits (58), Expect = 8.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
R K K +EK+ KK +K ++E + K K K E K K + + + +A
Sbjct: 231 RIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASA 282
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 26.8 bits (60), Expect = 3.4
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+RK ++++ +KK+ K E ++ K E+ K + K K++
Sbjct: 78 AERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEP 120
>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization
module that binds membranes and detects membrane
curvature. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions including organelle
biogenesis, membrane trafficking or remodeling, and cell
division and migration. Mutations in BAR containing
proteins have been linked to diseases and their
inactivation in cells leads to altered membrane
dynamics. A BAR domain with an additional N-terminal
amphipathic helix (an N-BAR) can drive membrane
curvature. These N-BAR domains are found in amphiphysins
and endophilins, among others. BAR domains are also
frequently found alongside domains that determine lipid
specificity, such as the Pleckstrin Homology (PH) and
Phox Homology (PX) domains which are present in beta
centaurins (ACAPs and ASAPs) and sorting nexins,
respectively. A FES-CIP4 Homology (FCH) domain together
with a coiled coil region is called the F-BAR domain and
is present in Pombe/Cdc15 homology (PCH) family
proteins, which include Fes/Fes tyrosine kinases, PACSIN
or syndapin, CIP4-like proteins, and srGAPs, among
others. The Inverse (I)-BAR or IRSp53/MIM homology
Domain (IMD) is found in multi-domain proteins, such as
IRSp53 and MIM, that act as scaffolding proteins and
transducers of a variety of signaling pathways that link
membrane dynamics and the underlying actin cytoskeleton.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions. The I-BAR domain
induces membrane protrusions in the opposite direction
compared to classical BAR and F-BAR domains, which
produce membrane invaginations. BAR domains that also
serve as protein interaction domains include those of
arfaptin and OPHN1-like proteins, among others, which
bind to Rac and Rho GAP domains, respectively.
Length = 194
Score = 27.4 bits (61), Expect = 3.4
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+KK + + D ++K +K ++K+K+ K E E++ ++ K+K
Sbjct: 100 RKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEK 143
Score = 25.9 bits (57), Expect = 9.2
Identities = 15/54 (27%), Positives = 34/54 (62%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E+L+ K+ K+++KK DK + + +EK K+ +KKK++ K + +++ ++
Sbjct: 86 KEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQE 139
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 27.3 bits (61), Expect = 3.5
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++ + KK K+K KR ++KK + +K +KK
Sbjct: 88 SEELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 27.8 bits (62), Expect = 3.5
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KK E K++K +++K+E KK KRK++ ++ KK K + A
Sbjct: 184 KKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAAS 234
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 26.9 bits (60), Expect = 3.5
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 113 KKKKRKEKKKKKDKKK---------KKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K+++ ++++K+K+ + KK + K RKE K EK+KKKKKKK+ KN
Sbjct: 32 KEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKELKN 89
>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional.
Length = 394
Score = 27.5 bits (62), Expect = 3.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 75 RSRDLITSMLTRAGFRFQE 93
R+RDL+ LT GF +
Sbjct: 307 RNRDLLYDGLTELGFECVK 325
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 27.1 bits (60), Expect = 3.6
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K +++ D+ KKE K+ K ++++K+ E +K+ K KN
Sbjct: 10 KDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKN 55
>gnl|CDD|225123 COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC
component [Carbohydrate transport and metabolism].
Length = 472
Score = 27.7 bits (62), Expect = 3.6
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 129 KKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K + + E E K +E K + K + A
Sbjct: 336 KTSKTESEDDLEAATAKMKEMKGESKGQSSALAADV 371
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 27.4 bits (61), Expect = 3.6
Identities = 6/40 (15%), Positives = 19/40 (47%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ ++ + EE+KK + + ++KK ++ + +
Sbjct: 195 RAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANES 234
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 27.3 bits (60), Expect = 3.7
Identities = 14/51 (27%), Positives = 35/51 (68%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
LR+ KK +KKK ++++ EK +++R+E +++ E E++++K +++ +
Sbjct: 107 LRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQ 157
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 27.7 bits (61), Expect = 3.7
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
R +K + E KK ++ K ++ K K+E K E+E + K+ + +KK+
Sbjct: 281 REIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKR 330
Score = 27.7 bits (61), Expect = 3.8
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
N K+R E ++K+ + K + +E K+ E +K++ +K + +
Sbjct: 242 NADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIE 289
Score = 26.9 bits (59), Expect = 6.0
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
++K++E K K+ ++ E +K++ E+ + + KK
Sbjct: 248 DEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKN 293
Score = 26.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKK---KEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
R K+++ K K D KE+K+ +KR+ EK + E +K ++ K K A D
Sbjct: 251 RQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFD 307
Score = 26.5 bits (58), Expect = 7.7
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
R++ K+++ +++ K+ ++ KEE KK+ + K ++K ++ D
Sbjct: 196 FRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNAD 244
>gnl|CDD|189027 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Exonuclease-1 (EXO1) is involved
in multiple, eukaryotic DNA metabolic pathways,
including DNA replication processes (5' flap DNA
endonuclease activity and double stranded DNA
5'-exonuclease activity), DNA repair processes (DNA
mismatch repair (MMR) and post-replication repair
(PRR)), recombination, and telomere integrity. EXO1
functions in the MMS2 error-free branch of the PRR
pathway in the maintenance and repair of stalled
replication forks. Studies also suggest that EXO1 plays
both structural and catalytic roles during MMR-mediated
mutation avoidance. EXO1 belongs to the FEN1-EXO1-like
family of structure-specific, 5' nucleases. These
nucleases contain a PIN (PilT N terminus) domain with a
helical arch/clamp region (I domain) of variable length
(approximately 43 residues in EXO1 PIN domains) and a
H3TH (helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. Nucleases within this group
also have a carboxylate-rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+/Mn2+). EXO1 nucleases also have
C-terminal Mlh1- and Msh2-binding domains which allow
interaction with MMR and PRR proteins, respectively.
Length = 210
Score = 27.1 bits (61), Expect = 3.8
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
KK E+++ +R+EE +K E ++ + +
Sbjct: 85 KKGTEEERRERREENLEKALELLREGNRSE 114
Score = 25.9 bits (58), Expect = 8.5
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK EE+++E+R+E +K E ++ + + ++
Sbjct: 85 KKGTEEERRERREENLEKALELLREGNRSEAREC 118
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes
play an important role in the degradation of both lipids
and cellular proteins. In order to perform this
degradative function, vacuoles/lysosomes contain
numerous hydrolases which have been transported in the
form of inactive precursors via the biosynthetic pathway
and are proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or Golgi
complex, or remain in the limiting membrane of the MVB
and are thereby transported to the limiting membrane of
the vacuole/lysosome as a consequence of fusion.
Therefore, the MVB sorting pathway plays a critical role
in the decision between recycling and degradation of
membrane proteins. A few archaeal sequences are also
present within this family.
Length = 169
Score = 26.8 bits (60), Expect = 3.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+K +E KK++ E+K KK E + KK KK K AL
Sbjct: 7 RKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAAL 44
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 27.3 bits (61), Expect = 3.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
L+ K K EK++ K K +EK K + K+EE+ K K
Sbjct: 196 LKYLKIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel. The
family carries eight putative transmembrane domains,
and, although it has no similarity to other known
channel proteins, it is clearly a calcium-activated
ionic channel. It is expressed in various secretory
epithelia, the retina and sensory neurons, and mediates
receptor-activated chloride currents in diverse
physiological processes.
Length = 449
Score = 27.6 bits (62), Expect = 3.9
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 79 LITSMLTRAGFRF-QEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEK 137
LIT M+T+ E +L P +L+ K +K+K KKKK+ +KK +E + E+
Sbjct: 248 LITIMITKQIINNITEVVL-P----------YLKKKIRKKKIKKKKEKEKKPEENEILER 296
Query: 138 RKEEKKKKE 146
+ E +
Sbjct: 297 IENESELPP 305
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 27.4 bits (61), Expect = 3.9
Identities = 12/27 (44%), Positives = 22/27 (81%)
Query: 132 EKKKEKRKEEKKKKEEEKKKKKKKKKK 158
EK K++R EEK+++EEEK +++K ++
Sbjct: 152 EKIKKERAEEKEREEEEKAAEEEKARE 178
Score = 26.6 bits (59), Expect = 6.3
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKK 153
K K+E+ +EK +EE++K EE+K ++
Sbjct: 153 KIKKERAEEKEREEEEKAAEEEKARE 178
Score = 26.2 bits (58), Expect = 7.4
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEEKKKK 152
K KKE ++++R+EE+K EEEK ++
Sbjct: 153 KIKKERAEEKEREEEEKAAEEEKARE 178
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 27.4 bits (60), Expect = 4.0
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
WL K ++ K KKK ++ +++++ K+K EE+ +E +KK+ + L
Sbjct: 636 WLDRKMRRIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGGVPDILL 691
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 26.6 bits (59), Expect = 4.1
Identities = 10/43 (23%), Positives = 27/43 (62%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
W + + + +K K ++ +K++ E+ +E+ +E + + EE +K+
Sbjct: 86 WEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 25.4 bits (56), Expect = 9.1
Identities = 10/52 (19%), Positives = 29/52 (55%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
W + EKK+ + +K + ++ +K + E+ ++E E+ + + ++ +K+
Sbjct: 77 WKTGPIESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 27.3 bits (61), Expect = 4.2
Identities = 11/59 (18%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
L + K E ++ + ++K E+ KE+ E + + EE + + ++ + + L+
Sbjct: 321 LEAQLEELESKLDELAEELAELEEKLEELKEE-LESLEAELEELEAELEELESRLEELE 378
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 27.4 bits (61), Expect = 4.2
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
K ++ E+ +++ + + KK KKK K+ K
Sbjct: 842 KMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGK 885
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of 70kDa
MW N terminal. This domain is found in eukaryotes. This
domain is about 90 amino acids in length. This domain is
found associated with pfam00076. This domain is part of
U1 snRNP, which is the pre-mRNA binding protein of the
penta-snRNP spliceosome complex. It extends over a
distance of 180 A from its RNA binding domain, wraps
around the core domain of U1 snRNP consisting of the
seven Sm proteins and finally contacts U1-C, which is
crucial for 5'-splice-site recognition.
Length = 94
Score = 26.1 bits (58), Expect = 4.2
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K K + + E EKR+ EK++K+E+ +KK +++ K+ +
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKEWD 89
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 26.9 bits (60), Expect = 4.2
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 125 DKKKKKEEKKKEKRKEEKKKKEEEKKKKKK--KKKKKKNA 162
++K K+ EK++EK+++ +KK E + KK K+ +K+ A
Sbjct: 151 ERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQA 190
Score = 26.5 bits (59), Expect = 6.5
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKK-KKEEEKKKKK 153
+K KE +K+++K+++ EKK E+ + KK +KE EK++ K
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 27.3 bits (61), Expect = 4.3
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ KE K ++ KKEE+++E+RK+ K+ E ++ ++K++
Sbjct: 324 NEFLKEFSKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNP 370
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 26.8 bits (60), Expect = 4.3
Identities = 14/51 (27%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEK-RKEEKKKKEEEKKKKKKKKKKKKNAL 163
+K+ K+ + + KK+K+ +K+++K +K+ EE +K K+++ ++K+ L
Sbjct: 41 EKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQEL 91
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 27.1 bits (61), Expect = 4.3
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+R E+ +++ K+ K + ++EKKK++++ KKKK K + K
Sbjct: 375 LQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGK 420
>gnl|CDD|224863 COG1952, SecB, Preprotein translocase subunit SecB [Intracellular
trafficking and secretion].
Length = 157
Score = 26.9 bits (60), Expect = 4.4
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 77 RDLITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLRNKKKKRK 118
R+LI+ + R G F +L+P F +LY + L ++ +
Sbjct: 113 RELISDLTARGG--FPPLMLAPINFD-ALYAQRLAEQQAEEV 151
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 27.6 bits (61), Expect = 4.4
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
R+ K KK K KK K+ KKK KK +KK+
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQ 652
>gnl|CDD|217451 pfam03249, TSA, Type specific antigen. There are several antigenic
variants in Rickettsia tsutsugamushi, and a
type-specific antigen (TSA) of 56-kilodaltons located on
the rickettsial surface is responsible for the
variation. TSA proteins are probably integral membrane
proteins.
Length = 502
Score = 27.1 bits (60), Expect = 4.5
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 115 KKRKEK---KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
KK EK ++++D + K+K+ +K KE K K+
Sbjct: 360 KKAMEKLAAQQEEDAGNQGGGDCKKKQGASEKSKEGGKGKE 400
>gnl|CDD|216581 pfam01577, Peptidase_S30, Potyvirus P1 protease. The potyviridae
family positive stand RNA viruses with genome encoding a
polyprotein. members include zucchini yellow mosaic
virus, and turnip mosaic viruses which cause
considerable losses of crops worldwide. This family
consists of a C terminus region from various plant
potyvirus P1 proteins (found at the N terminus of the
polyprotein). The C terminus of P1 is a serine-type
protease responsible for autocatalytic cleavage between
P1 and the helper component protease pfam00851. The
entire P1 protein may be involved in virus-host
interactions.
Length = 245
Score = 26.9 bits (60), Expect = 4.5
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 99 TQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ LR + K K++KK + +K + K++E+ K++E E+++ +
Sbjct: 1 ADLEAKVAERLLRKEMSKIKQEKKGRIILRKLSPAQVAKKREKLKREEREERQFLQGA 58
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 26.9 bits (59), Expect = 4.6
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 127 KKKKEEKKKEKRKEEKKKKEE--EKKKKKKKKKKKKN 161
K++KE K + +K +KKKKE+ EKK K KKK++K N
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPN 48
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 27.0 bits (60), Expect = 4.9
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 123 KKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ + EE + +E + EEE K K
Sbjct: 220 AESPAEPAEETAETTPEETEDAPEEENNKPVKPP 253
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 27.1 bits (60), Expect = 5.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
K K+ + KKK K KKKE K+ + +E++ + E++ K
Sbjct: 142 IETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
Score = 26.3 bits (58), Expect = 9.9
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
+ K KK K KKK K KKK+ ++ +K EE+ + E+E K
Sbjct: 142 IETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 25.9 bits (57), Expect = 5.1
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K++ K K K+ + KK + E +K K KK KK
Sbjct: 20 KKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKD 62
Score = 25.9 bits (57), Expect = 5.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+KK+ + K K+ K KK + E ++ + KK KK KK
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKK 65
Score = 25.9 bits (57), Expect = 6.4
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
KK+ K K K+ K KK + + E+ K KK KK KK
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKK 65
Score = 25.9 bits (57), Expect = 6.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+KK+ K K KE K K+ + E +K K KK K
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDK 60
Score = 25.5 bits (56), Expect = 8.4
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
KK + K K + K K+ + + E+ K KK KK KK
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKG 66
>gnl|CDD|212510 cd11724, TP_methylase_like, Uncharacterized subfamily of S-AdoMet
dependent tetrapyrrole methylases. TP-methylases use
S-AdoMet (S-adenosyl-L-methionine or SAM) in the
methylation of diverse substrates. Most members catalyze
various methylation steps in cobalamin (vitamin B12)
biosynthesis, other members like Diphthine synthase and
Ribosomal RNA small subunit methyltransferase I (RsmI)
act on other substrates. The function of this subfamily
is not known.
Length = 255
Score = 26.9 bits (60), Expect = 5.1
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
K + + EK + EE+KK++ E+ K ++
Sbjct: 61 GGKPWENLEAEKSPREAFEEEKKRQREEFVKVIREA 96
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 27.3 bits (60), Expect = 5.2
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 100 QFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
Q + T + + ++ R K + K +EK KEK K KK ++ +K+ K+ +K K
Sbjct: 192 QTNVTHTTCYDKMRRSPRNTSTIKNNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSK 251
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 26.8 bits (60), Expect = 5.2
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ KK R + +K ++ +K + KEK EE ++ EEE K+ K++ + +
Sbjct: 359 KLPKKARGQLPPEKREQLEKLLETKEKLSEELEELEEELKELKEELESLYSE 410
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 26.1 bits (58), Expect = 5.3
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 129 KKEEKKKEKRKEEKKKKEEE 148
E KKE++KEE++++ ++
Sbjct: 77 AAAEAKKEEKKEEEEEESDD 96
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 26.9 bits (60), Expect = 5.3
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
E++K + KK KE+ +E +E++++ EE++ + +K+K + A
Sbjct: 135 EEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELATT 180
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 27.1 bits (61), Expect = 5.3
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++ + K EK K K+ + +KKK
Sbjct: 325 FLEENPVEASKIVEKVLLAAKARAAAKKARELTRKKKLSSIS 366
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis].
Length = 513
Score = 27.1 bits (60), Expect = 5.4
Identities = 7/51 (13%), Positives = 16/51 (31%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+ K + + +++ + +K K KK + K N
Sbjct: 409 EDAKLLKTTRPGLEEESDISDEIKKLKSSKKALLRGLGVRFTLSKLLANLG 459
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 26.9 bits (60), Expect = 5.4
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
KE+++K+ +KK K+E K+E+R + K EE
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEE 421
>gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor. The ribosome recycling
factor (RRF / ribosome release factor) dissociates the
ribosome from the mRNA after termination of translation,
and is essential bacterial growth. Thus ribosomes are
"recycled" and ready for another round of protein
synthesis.
Length = 165
Score = 26.3 bits (59), Expect = 5.4
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK +KDK+ ++E K+ +++ +K + KK + KKK+K
Sbjct: 122 KKLEKDKEISEDEVKRAEKEIQKLTDKYIKKIDELLKKKEK 162
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated
splicing factor. The human PRP3 has been implicated in
autosomal retinitis pigmentosa.
Length = 222
Score = 26.6 bits (59), Expect = 5.5
Identities = 9/51 (17%), Positives = 26/51 (50%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
R K+++R + +K K ++ E+ + + K E+++ ++ + K +
Sbjct: 14 RKKRRRRGLQFIEKGKFSQQAEELRREAKLEEEEARISEEAQNAGLKSATD 64
>gnl|CDD|180892 PRK07220, PRK07220, DNA topoisomerase I; Validated.
Length = 740
Score = 27.0 bits (60), Expect = 5.6
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ EW +K+++++K + KK+K + K+ + KK E+ ++ + A
Sbjct: 665 FIEW-----QKKQKEEKAQQPKKEKPKSIKDIKGIGKKTAEKLEEAGITTVEALAEA 716
>gnl|CDD|220410 pfam09798, LCD1, DNA damage checkpoint protein. This is a family
of proteins which regulate checkpoint kinases. In
Schizosaccharomyces pombe this protein is called Rad26
and in Saccharomyces cerevisiae it is called LCD1.
Length = 648
Score = 27.1 bits (60), Expect = 5.6
Identities = 10/40 (25%), Positives = 28/40 (70%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
++K+++++K+K + + KEK +E +K ++E + + ++K
Sbjct: 11 QQKQEERNKQKSRVNELKEKHDQELQKLKQELQSLEDERK 50
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 26.8 bits (59), Expect = 5.6
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
++K+ KK K+ + KK K K K+ K KK K K
Sbjct: 14 EEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTT 59
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 26.0 bits (57), Expect = 5.7
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 134 KKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KK K+ ++ E+K +KK+KK N L
Sbjct: 52 KKPKKISAEEA--EKKLLQKKEKKALTNVLR 80
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 27.0 bits (61), Expect = 5.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 136 EKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
EK + + + KK K+KKK AL
Sbjct: 374 EKAIKAAQARLRAAKKVKRKKKTSGPAL 401
>gnl|CDD|234298 TIGR03659, IsdE, heme ABC transporter, heme-binding protein isdE.
This family of ABC substrate-binding proteins is
observed primarily in close proximity with proteins
localized to the cell wall and bearing the NEAT (NEAr
Transporter, pfam05031) heme-binding domain. IsdE has
been shown to bind heme and is involved in the process
of scavenging heme for the purpose of obtaining iron.
Length = 289
Score = 26.8 bits (60), Expect = 5.8
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ +K +EE+ ++ KE +K+ E KKK K KKK K
Sbjct: 132 TELGEKYGREEQAEKLVKEINEKEAEVKKKVKGKKKPK 169
>gnl|CDD|148511 pfam06936, Selenoprotein_S, Selenoprotein S (SelS). This family
consists of several mammalian selenoprotein S (SelS)
sequences. SelS is a plasma membrane protein and is
present in a variety of tissues and cell types. The
function of this family is unknown.
Length = 190
Score = 26.4 bits (58), Expect = 5.8
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 134 KKEKRKEEKKKKEEEKKKKK 153
K K KE++K+ EEEK+++K
Sbjct: 99 KAAKFKEKQKQLEEEKRRQK 118
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 25.7 bits (57), Expect = 5.8
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEK 142
KK++K K ++ DK +K++ K K+++
Sbjct: 40 KKQQKAKAREADKARKQQLKAKQRQAAND 68
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 25.5 bits (56), Expect = 5.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 124 KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
K K++K E + +++ EK K KKK+ K++ K
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAK 67
Score = 24.7 bits (54), Expect = 9.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
KK++K + + + K +K K KKK+ K++ K
Sbjct: 34 KKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAK 67
>gnl|CDD|222040 pfam13311, DUF4080, Protein of unknown function (DUF4080). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 187
Score = 26.4 bits (59), Expect = 5.9
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 110 LRNKKKKRKEK-KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
LR K K R E + DK++K+E ++ ++EEK + + + K+ +K
Sbjct: 115 LREKAKSRPEFLDAEDDKEEKEEIREFYLKEEEKLRYYLPEYEGTDAKQLRKMT 168
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 27.0 bits (60), Expect = 5.9
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 121 KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
KK + +EK K ++ K + KK KK + K AL
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKAL 375
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 26.8 bits (60), Expect = 5.9
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKE-EKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
E++ + +K KE+ K + KK+ E+ E KEE + +++E+ + K ++ +K
Sbjct: 535 EYVYSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEIEAKTEELQK 587
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in
chromatin remodeling [Chromatin structure and dynamics].
Length = 237
Score = 26.6 bits (59), Expect = 6.0
Identities = 13/46 (28%), Positives = 17/46 (36%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
RK K K++ K E + +E KKKK KN
Sbjct: 73 TRKTTGKNDLPKEEDSSLPSSKETENGDTEGKETDKKKKSSTISKN 118
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 26.5 bits (59), Expect = 6.1
Identities = 25/48 (52%), Positives = 40/48 (83%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KKK +KE K++K+K +KK+ ++++KR+E KK++++KK KKKKK KKK
Sbjct: 155 KKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKK 202
>gnl|CDD|173004 PRK14538, PRK14538, putative bifunctional signaling protein/50S
ribosomal protein L9; Provisional.
Length = 838
Score = 27.1 bits (60), Expect = 6.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 129 KKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K +KKK +E+K+ E KK K + KK LD
Sbjct: 732 AKIKKKKILEQEKKRNHELLMKKLKSEIDNKKITLD 767
>gnl|CDD|211393 cd11381, NSA2, pre-ribosomal protein NSA2 (Nop seven-associated 2).
NSA2 appears to be a protein required for the
maturation of 27S pre-rRNA in yeast; it has been
characterized in mammalian cells as a nucleolar protein
that might play a role in the regulation of the cell
cycle and in cell proliferation.
Length = 257
Score = 26.8 bits (60), Expect = 6.1
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 100 QFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKK---EKRKEEK-------KKKEEEK 149
+ G L E + KK+ R+ K+ K +K + K K +KR +EK K EE
Sbjct: 10 RHGRRLDHEERKRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIKMHEERN 69
Query: 150 KKKKKKKKKKKNAL 163
K+K K + A+
Sbjct: 70 VKQKVDDKVPEGAV 83
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 26.1 bits (58), Expect = 6.1
Identities = 13/45 (28%), Positives = 32/45 (71%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ +K+ E+ +++ ++ +E KK EK E +KKKE++++ ++++K
Sbjct: 69 EQAEKQVEQAREQWQEANQERKKLEKLLEREKKKEQKEENRREQK 113
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 26.7 bits (59), Expect = 6.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKE 136
R K + K +K K+ KK+KK E+K E
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKREEKDE 47
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional.
Length = 814
Score = 26.9 bits (59), Expect = 6.2
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
+LY E +NK+ R E K+ D++KKKE +KK K +E +K
Sbjct: 458 TLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRK 505
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is
involved in recombination. Rap (recombination adept with
plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 26.5 bits (59), Expect = 6.3
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 121 KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
K++K ++KK++ + + +R+E K +KE+ K + K
Sbjct: 35 KREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
Score = 26.1 bits (58), Expect = 8.5
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
KR++ ++KK K + + E+++ K ++EK K + K
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
>gnl|CDD|234547 TIGR04330, cas_Cpf1, CRISPR-associated protein Cpf1, subtype
PREFRAN. This family is the long protein of a novel
CRISPR subtype, PREFRAN, which is most common in
Prevotella and Francisella, although widely distributed.
The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the
helicase Cas3 and endonuclease Cas3-HD.
Length = 1287
Score = 26.7 bits (59), Expect = 6.4
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 91 FQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
F E LS + L E+ K +K KK KKD K+++ +K+ K + EE
Sbjct: 58 FIEETLSNVELSFDLLEEYFDLYNKLKKFKKDKKDLAKEQDTLRKQIVKSLQDNLPEEIF 117
Query: 151 KKKKKKKKKKNAL 163
K KK K L
Sbjct: 118 KNIFSKKLLKGVL 130
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 26.2 bits (58), Expect = 6.6
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
L ++ KKR+++ +K K+ K +E K + + + + K + + KK+K NA +
Sbjct: 49 LESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAFN 103
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 26.8 bits (59), Expect = 6.6
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
+KK++ +++ + +K+ KK +K++EE++ EE+ K
Sbjct: 6 DKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLK 46
>gnl|CDD|216568 pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are
DNA methylases. The family contains both N-4
cytosine-specific DNA methylases and N-6
Adenine-specific DNA methylases.
Length = 219
Score = 26.6 bits (59), Expect = 6.7
Identities = 7/54 (12%), Positives = 17/54 (31%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
++ K +KDK KK+ + + + + +K+
Sbjct: 109 KYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIGDVWDFPRVQPSEKESGGHPT 162
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 26.6 bits (59), Expect = 6.8
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 97 SPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+PT+ L + K++ + +KK+ +K EE + KE + E+ + +
Sbjct: 154 NPTK-LELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRAG 212
Query: 157 KKKK 160
KKKK
Sbjct: 213 KKKK 216
>gnl|CDD|205150 pfam12925, APP_E2, E2 domain of amyloid precursor protein. The E2
domain is the largest of the conserved domains of the
amyloid precursor protein. The structure of E2 consists
of two coiled-coil sub-structures connected through a
continuous helix, and bears an unexpected resemblance to
the spectrin family of protein structures.E 2 can
reversibly dimerise in solution, and the dimerisation
occurs along the longest dimension of the molecule in an
antiparallel orientation, which enables the N-terminal
substructure of one monomer to pack against the
C-terminal substructure of a second monomer. The high
degree of conservation of residues at the putative dimer
interface suggests that the E2 dimer observed in the
crystal could be physiologically relevant. Heparin
sulfate proteoglycans, the putative ligands for the
precursor present in extracellular matrix, bind to E2 at
a conserved and positively charged site near the dimer
interface.
Length = 193
Score = 26.2 bits (58), Expect = 6.8
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 97 SPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKE-EKKKKEEEKKKKKKK 155
SPT Y K+ E ++ K+ KK+ EEK +E+ + K+ +E E + K
Sbjct: 6 SPTSDAVDPYFSEP----KEDNEHERYKEAKKRLEEKHRERMTQVMKEWEEAESQYKNLP 61
Query: 156 KKKKKNA 162
K K A
Sbjct: 62 KADPKAA 68
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 26.6 bits (59), Expect = 6.8
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K K++ KK + + K+ ++ KEE + K K
Sbjct: 528 GTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNILKL 574
>gnl|CDD|218079 pfam04420, CHD5, CHD5-like protein. Members of this family are
probably coiled-coil proteins that are similar to the
CHD5 (Congenital heart disease 5) protein. In
Saccharomyces cerevisiae this protein localises to the
ER and is thought to play a homeostatic role.
Length = 161
Score = 26.1 bits (58), Expect = 6.9
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKK------------KEKRKEEKKKKEEEKKKKKKKK 156
+ K +++ + +K+ + K E K RK +K E EK KK+
Sbjct: 32 KVPLSKDAKEQSQLRKEILELKRELNSISAQDEFAKWAKLNRKLDKLTDELEKLKKELTA 91
Query: 157 KKKK 160
+K K
Sbjct: 92 QKSK 95
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 26.7 bits (59), Expect = 7.1
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEK----KKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K KR KK K K K R+ + K KK+K KK+ +
Sbjct: 311 KKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQV 366
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 26.6 bits (59), Expect = 7.1
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 115 KKRKEKKKKKDKKKKKEEKKK--EKRKEEKKKKEEEKKKKKKKKKKKK 160
+ KE + + K+K EEK + E+R EE KK+ EE ++K K+ K+ K
Sbjct: 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289
Score = 26.6 bits (59), Expect = 7.4
Identities = 13/50 (26%), Positives = 32/50 (64%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ + K+K ++K ++ EE+ +E +KE ++ +E+ K+ K+ K+K ++
Sbjct: 245 KELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEE 294
Score = 26.6 bits (59), Expect = 8.8
Identities = 13/50 (26%), Positives = 32/50 (64%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K+ + K++ ++ +K+ E + KRK E+K +E E++ ++ KK+ ++
Sbjct: 228 KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE 277
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 26.6 bits (59), Expect = 7.1
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEK--KKKEEEKKKKKKKKKK 158
L NK K+ +K+ DK+KK+ + + K + E KK +E +K+K+K +
Sbjct: 811 LINKAKELARLQKQLDKEKKEVIRIEGKLENEGFVKKAPKEVIEKEKEKLE 861
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 26.6 bits (60), Expect = 7.1
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 107 TEWLRNKKKKR-KEKKKKKDKKKKKEEKKKEKR--KEEKKKKEEEKKKKKKK 155
E L+ ++ KE + K K + E E + KEE K E E + + +
Sbjct: 44 LEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAE 95
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 26.1 bits (58), Expect = 7.2
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
++ + +E+ ++ +++K++EE K + E KK+E +KKKK+K
Sbjct: 136 DEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 25.6 bits (56), Expect = 7.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 132 EKKKEKRKEEKKKKEEEKK 150
K E +KEEKK++EEE++
Sbjct: 85 GAKAEAKKEEKKEEEEEEE 103
>gnl|CDD|214787 smart00721, BAR, BAR domain.
Length = 239
Score = 26.2 bits (58), Expect = 7.6
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 92 QEFLLSPTQFGTSLYTEWLRNKKKKRKEK------KKKKDKKKKKEEKKKEKRKEEKKKK 145
+ F+L F + E ++ +KK + K + K KK KK ++KK+ K K ++
Sbjct: 119 RTFILPLLNFLLGEFKE-IKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEE 177
Query: 146 EEEKKKKK 153
E K K++
Sbjct: 178 ELRKAKQE 185
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 26.7 bits (59), Expect = 7.7
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKK 144
K+K K KK K KE + K
Sbjct: 331 TKEKNKKVPVMFLGKKPKEKEVESK 355
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 26.5 bits (58), Expect = 7.8
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 92 QEFLLSPTQFGTSLYTE------WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKK 145
QE L +F + T+ N +K +E K K K EK + + + K +
Sbjct: 256 QELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYE 315
Query: 146 EEEKKKKKKKKK 157
K+K ++
Sbjct: 316 NYVNAMKQKSQE 327
>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein. All proteins in this family
for which functions are known are used for the
recognition of DNA damage as part of nucleotide excision
repair. This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 172
Score = 25.9 bits (57), Expect = 8.0
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
+K+R+E+ K++ K+KK E+K KE R+ + + KK+ +
Sbjct: 99 EKERREESKEEMKEKKFEKKLKELRRAVRSSEYTNKKEGRV 139
>gnl|CDD|148061 pfam06229, FRG1, FRG1-like family. The human FRG1 gene maps to
human chromosome 4q35 and has been identified as a
candidate for facioscapulohumeral muscular dystrophy.
Currently, the function of FRG1 is unknown.
Length = 189
Score = 26.2 bits (58), Expect = 8.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
R E + K K+ K KK +K +++K + +++ K+ KK +
Sbjct: 128 RMEARFKPRIKESKYVKKFQKIQDKKLRLSDDEVKRLKKARA 169
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 26.6 bits (59), Expect = 8.2
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
L + ++ +E+ ++ KK + E+ E+ + K + EE KK+ +K +K +
Sbjct: 693 LEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELL 745
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 26.3 bits (58), Expect = 8.5
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 125 DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K EK+ +K+ ++ + + K++K++K+KK
Sbjct: 120 LDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKK 157
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 25.3 bits (56), Expect = 8.6
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 128 KKKEEKKKEKRKEEKKKKEEE 148
+E++KEE++++EE+
Sbjct: 60 AAAAAAAEEEKKEEEEEEEED 80
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 25.7 bits (57), Expect = 8.6
Identities = 14/36 (38%), Positives = 28/36 (77%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
+R E ++ +D++KK +E++ +++ EE K++E EKKK
Sbjct: 91 ERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 26.3 bits (58), Expect = 8.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
K K KK + K+++ +KEE +KE KK +K K
Sbjct: 409 DTLYKTKIFYHKKKINQNNKEQDIKKEELLEKEFVKKSEKIPKN 452
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1. All proteins in this family for
which functions are known are cyclins that are
components of TFIIH, a complex that is involved in
nucleotide excision repair and transcription initiation.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, StanfordUniversity) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 305
Score = 26.3 bits (58), Expect = 8.9
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ KK ++ + E+ K+K ++ EE K +K+K
Sbjct: 249 RELRILVKKYEEPRSEKVAALKKKLDECHSIEENLSSVKIRKRK 292
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 26.2 bits (58), Expect = 8.9
Identities = 10/56 (17%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKKKKEEK----KKEKRKEEKKKKEEEKKKKKKK 155
S E + K+++ +E K+ +++ +++R + +K ++E K+ + K
Sbjct: 81 SQLKEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTRSK 136
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 25.3 bits (56), Expect = 9.0
Identities = 9/49 (18%), Positives = 30/49 (61%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ + + K ++K+++ E+++E ++ + K ++ +KK++K + + L
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQ 113
>gnl|CDD|110955 pfam02007, MtrH, Tetrahydromethanopterin S-methyltransferase MtrH
subunit. The enzyme tetrahydromethanopterin
S-methyltransferase EC:2.1.1.86 is composed of eight
subunits. The enzyme is a membrane- associated enzyme
complex which catalyzes an energy-conserving,
sodium-ion-translocating step in methanogenesis from
hydrogen and carbon dioxide.
Length = 296
Score = 26.3 bits (58), Expect = 9.0
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 108 EWLRNKKKKRKEKKKKKD 125
+WLR KKK E D
Sbjct: 230 DWLRKFKKKLPEAGAVCD 247
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 26.2 bits (58), Expect = 9.0
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K K +++K+++KK KK E++ E ++E KK + +KKK K K K
Sbjct: 180 KRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKV 229
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 26.4 bits (59), Expect = 9.0
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 128 KKKEEKKKEKRKEEKKKKEEE 148
EE+++E+ +EE+++ EE
Sbjct: 299 AAAEEEEEEEEEEEEEEPSEE 319
>gnl|CDD|235202 PRK04023, PRK04023, DNA polymerase II large subunit; Validated.
Length = 1121
Score = 26.4 bits (59), Expect = 9.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKK 134
EWL +KEK+++++KKK K + K
Sbjct: 269 EWLEELISGKKEKEEEEEKKKIKPKDK 295
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 26.2 bits (58), Expect = 9.1
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 113 KKKKRKEKKKKKDKK---KKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KK +E +K+++ K K+ + +K ++R +EKK E+ KK KKK+K + D
Sbjct: 130 AKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKGGGDEGD 184
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 26.0 bits (58), Expect = 9.2
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K++ + + + + KK +EE ++ E+ K+ E++ KK K + +K D
Sbjct: 82 KQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAELEKYEKND 133
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 26.4 bits (59), Expect = 9.3
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 87 AGFRFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKE 146
F+ L GT +E +R K++ +E +K+++ ++ ++ +K EE
Sbjct: 198 KKLGFERLELEEE--GTP--SELIREIKEELEEIEKERESLLEELKELAKKYLEELLALY 253
Query: 147 EE 148
E
Sbjct: 254 EY 255
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 26.4 bits (58), Expect = 9.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
+ K EK K K+K K +++ +K + +K++ EE+
Sbjct: 734 KQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSS 773
>gnl|CDD|173241 PRK14780, PRK14780, lipoprotein signal peptidase; Provisional.
Length = 263
Score = 26.0 bits (57), Expect = 9.3
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKK 143
K +K+K + +KKK +E E + K
Sbjct: 224 IKWKKDKDSEDNKKKIADENDLEINEPSNK 253
>gnl|CDD|107164 PHA02277, PHA02277, hypothetical protein.
Length = 150
Score = 25.8 bits (56), Expect = 9.4
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K K K +K++ K+K+E+ ++K++EE +KK E +K + KK +
Sbjct: 101 KAKDKLNEKREAYLKEKQEELRQKQQEEAQKKTESDSNEKVIQLKKND 148
>gnl|CDD|238560 cd01140, FatB, Siderophore binding protein FatB. These proteins
have been shown to function as ABC-type initial
receptors in the siderophore-mediated iron uptake in
some eubacterial species. They belong to the TroA
superfamily of periplasmic metal binding proteins that
share a distinct fold and ligand binding mechanism. A
typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind
their ligands in the cleft between these domains.
Length = 270
Score = 26.1 bits (58), Expect = 9.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 130 KEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
KEE+ KE E E K K KKK
Sbjct: 122 KEEEAKELVAEIDASIAEAKSAAKGKKK 149
>gnl|CDD|180007 PRK05309, PRK05309, 30S ribosomal protein S11; Validated.
Length = 128
Score = 25.5 bits (57), Expect = 9.5
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 149 KKKKKKKKKKKKN 161
KKKK KKK KKN
Sbjct: 2 KKKKTVKKKVKKN 14
>gnl|CDD|220897 pfam10883, DUF2681, Protein of unknown function (DUF2681). This
family of proteins is found in bacteria. Proteins in
this family are typically between 81 and 117 amino acids
in length.
Length = 87
Score = 25.0 bits (55), Expect = 9.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K KK ++ +K + + E+ EK E E K K ++K ++N
Sbjct: 24 KLKKAQRENRKLQAENEQLATEKAVAETEVKNAKVRQKNEENT 66
>gnl|CDD|217553 pfam03430, TATR, Trans-activating transcriptional regulator. This
family of trans-activating transcriptional regulator
(TATR), also known as intermediate early protein 1, are
common to the Nucleopolyhedroviruses.
Length = 571
Score = 26.4 bits (58), Expect = 9.7
Identities = 13/45 (28%), Positives = 17/45 (37%)
Query: 103 TSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEE 147
S +K KK K KK+ K KK + EE+ E
Sbjct: 133 DSDSDSSDSSKGKKLVNKPKKRQKYKKATIQSPTSLTEEENYNTE 177
>gnl|CDD|205219 pfam13038, DUF3899, Domain of unknown function (DUF3899). Putative
Tryptophanyl-tRNA synthetase.
Length = 92
Score = 25.0 bits (55), Expect = 9.7
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKK 145
+ + ++ ++ +KK+K +E++ +K +KKK
Sbjct: 26 FFDGFSYGFRRLFRQLVEKKEKDSIEEDEFANDKKVKKKKY 66
>gnl|CDD|235551 PRK05667, dnaG, DNA primase; Validated.
Length = 580
Score = 26.3 bits (59), Expect = 9.7
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
+ ++R E+ K++ + E+R E + E K+K
Sbjct: 537 KLRDQLLEERLEELIAKERLLEGHGLSSEERLELLQLLIELKRK 580
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 26.2 bits (58), Expect = 9.9
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
+K +K KK K ++ +++ K E+E
Sbjct: 11 EKISKKAAKKAAAKAEKLRREATAKAAAASLEDE 44
>gnl|CDD|223624 COG0550, TopA, Topoisomerase IA [DNA replication, recombination,
and repair].
Length = 570
Score = 26.0 bits (58), Expect = 10.0
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
R + + K++ + KDK + +E K K K K E+K KK+
Sbjct: 210 SARLTEIEGKKEGRLKDKDEAEEIVNKLKGKPAKVVSVEKKPKKRSPPP 258
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.128 0.353
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,365,247
Number of extensions: 817636
Number of successful extensions: 24299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13919
Number of HSP's successfully gapped: 3809
Length of query: 164
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 74
Effective length of database: 6,945,742
Effective search space: 513984908
Effective search space used: 513984908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (24.8 bits)