RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3546
(164 letters)
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A
{Entamoeba histolytica}
Length = 327
Score = 44.8 bits (106), Expect = 3e-06
Identities = 22/157 (14%), Positives = 41/157 (26%), Gaps = 22/157 (14%)
Query: 10 SDPGTGLQKDIADARCTALSYLIETIPANFPGDRLDHYTTQAVKGWKRKLSGIFRTPNVK 69
++ KDI D R ++ +L I + NV
Sbjct: 90 NNSIMSKHKDINDPRAKSVLHLYRDI-----------------LPYLINKPKHIFIENVP 132
Query: 70 GFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGTS-----LYTEWLRNKKKKRKEKKKKK 124
F+ S I ++L + + ++ + SP G Y K + ++K
Sbjct: 133 LFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTPFKNEIQLHQEK 192
Query: 125 DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ KK K +
Sbjct: 193 ESMISNYLDNNVNESYSIPSDLILKKGMLFDIVGKDD 229
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase
homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP:
c.66.1.26
Length = 343
Score = 44.8 bits (106), Expect = 3e-06
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 67 NVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGTS-----LYTEWLRNKKKKRKEKK 121
NVKGFE S +RDL+ + GF++QEFLLSPT G + + +
Sbjct: 119 NVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAP 178
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ + K E ++ +++ + K +
Sbjct: 179 GQVLMEFPKIEIHRKNQQDSDLSVKMLKDFLEDDTDVN 216
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 44.0 bits (103), Expect = 3e-06
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKK-EKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+W R +++KR ++ K ++E ++K +K EE +++ E+ +K K + +
Sbjct: 89 KW-REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Score = 41.3 bits (96), Expect = 3e-05
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE----KKKKKKKKKKKKN 161
+K +E+++K+ ++ K E+ EK KK+ E ++ ++ +K K N
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Score = 33.2 bits (75), Expect = 0.022
Identities = 9/44 (20%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 125 DKKKKKEEKKKEKRKEEKK----KKEEEKKKKKKKKKKKKNALD 164
D+ ++ E ++ R+E++K K +++ ++K K L+
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE 121
Score = 32.4 bits (73), Expect = 0.038
Identities = 6/39 (15%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 113 KKKKRKEKKKKKDKKK---KKEEKKKEKRKEEKKKKEEE 148
K +++ ++K K + +++ ++ EK K + ++
Sbjct: 106 KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Score = 27.4 bits (60), Expect = 1.8
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
EW KK +E +++ ++ +K K R +K ++
Sbjct: 111 EWREKAKKDLEEWNQRQSEQVEKN--KINNRIADKAFYQQPD 150
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 44.0 bits (103), Expect = 7e-06
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK +KEK +++KKK+ E+K+++R+ KK +E K+ ++ K K
Sbjct: 823 ARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKY 872
Score = 41.7 bits (97), Expect = 4e-05
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K + KK KK+K +EEKKKE ++EK+++ +K K+ K+ ++
Sbjct: 819 ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEE 866
Score = 34.8 bits (79), Expect = 0.008
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 106 YTEWLRNKKKKRKEK----------KKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
Y K EK + K KK K+EK + +++K+ +E+EK+++ K
Sbjct: 795 YPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNK 854
Query: 156 KKKKKNA 162
K K+
Sbjct: 855 KGIKETK 861
Score = 34.4 bits (78), Expect = 0.012
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ K + KK KKE+ E+ K+++ +++E++++ KK K+ D
Sbjct: 820 RAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKEND 864
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 38.6 bits (90), Expect = 5e-04
Identities = 10/55 (18%), Positives = 17/55 (30%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ K EK + E +K E + EEE K + + +
Sbjct: 940 QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA 994
Score = 37.0 bits (86), Expect = 0.002
Identities = 9/54 (16%), Positives = 22/54 (40%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
L+ K ++ ++ K +K E E+ + E + +++ K N +
Sbjct: 933 LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV 986
Score = 36.2 bits (84), Expect = 0.003
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
L K + + +K + + ++ +EE K +++ K + L
Sbjct: 947 LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001
Score = 35.9 bits (83), Expect = 0.004
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K E K + ++K E+ K+ K EK E + +K +
Sbjct: 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSD 968
Score = 35.5 bits (82), Expect = 0.005
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKE-----EEKKKKKKKKKKKKNAL 163
++E KK K + + E KK E K + +E+ K+ K +K N L
Sbjct: 900 MMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954
Score = 35.1 bits (81), Expect = 0.007
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ K + ++ K K+ + + EKK EE K K + ++ + L
Sbjct: 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Score = 34.7 bits (80), Expect = 0.011
Identities = 8/57 (14%), Positives = 20/57 (35%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
E + + K + +K ++ K+ + E+ E + +K + L
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972
Score = 34.3 bits (79), Expect = 0.012
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ + K + ++ ++E KK K E + ++ KK
Sbjct: 873 HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIG 925
Score = 32.8 bits (75), Expect = 0.048
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRK----EEKKKKEEEKKKKKKKKKKKK 160
L+ K + + ++ K E K + ++ + K+ K +K +
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960
Score = 32.0 bits (73), Expect = 0.084
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+KK E+ K K + ++ + K + K E+E+ ++ + K+
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052
Score = 31.6 bits (72), Expect = 0.12
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K RKE + + +KK EE + + E ++ E K++ K +K
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEK 1039
Score = 30.8 bits (70), Expect = 0.18
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
R+ K++ KK K E + E+ K+ E + + ++K ++
Sbjct: 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK 945
Score = 30.1 bits (68), Expect = 0.31
Identities = 6/49 (12%), Positives = 22/49 (44%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+K + ++ + +++ K + +E+ K ++ + + +KK
Sbjct: 961 ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Score = 29.3 bits (66), Expect = 0.60
Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
L EK + ++ + E++ + + +E+ K +K+ +
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEEAKN-ATNRVLSLQEEIAKLRKELHQTQT 1005
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 37.6 bits (88), Expect = 8e-04
Identities = 11/49 (22%), Positives = 29/49 (59%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+ + K + E+ ++++ K+E++ + ++++EE+K K KK +K
Sbjct: 213 VWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 36.0 bits (84), Expect = 0.003
Identities = 11/43 (25%), Positives = 26/43 (60%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K + ++ ++EE KE++++ + E+++++KK K KK
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKK 257
Score = 35.3 bits (82), Expect = 0.004
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K ++ ++++ KEEK+ + +++EEEKK K KK +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 35.3 bits (82), Expect = 0.005
Identities = 10/43 (23%), Positives = 28/43 (65%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K + ++ ++++ K++++ +++ EEE+++KK K KK +
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVE 259
Score = 33.3 bits (77), Expect = 0.024
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
W + + ++++ K++KE+ E EE++++++ K KK +K
Sbjct: 214 WSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 31.4 bits (72), Expect = 0.11
Identities = 9/50 (18%), Positives = 29/50 (58%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
+++ ++ +E++ K++K+ +++ + +EE+KK + +K +K
Sbjct: 212 YVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 27.2 bits (61), Expect = 2.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEE 147
K+ KE + +++EE+KK K K+ +K +
Sbjct: 229 EAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 27.2 bits (61), Expect = 2.9
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
E K+++++ + ++++EEKK + +K EK + E
Sbjct: 226 EEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWE 266
Score = 26.4 bits (59), Expect = 5.0
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K E +E +EE+ KEE++ + +++
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEE 248
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 37.2 bits (85), Expect = 0.001
Identities = 10/53 (18%), Positives = 26/53 (49%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+W ++K+ +E +++ +K +K EE +++ E+ +K K +
Sbjct: 104 KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 156
Score = 35.7 bits (81), Expect = 0.003
Identities = 10/49 (20%), Positives = 28/49 (57%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+K R+E++K+ + + +++ +E+ KK EE +++ ++ +K
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 151
Score = 33.0 bits (74), Expect = 0.026
Identities = 11/55 (20%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E +R +++++++ ++ D + ++E R++ KK EE +++ ++ +K K
Sbjct: 100 ESIRKWREEQRKRLQELDAAS--KVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 152
Score = 28.3 bits (62), Expect = 1.1
Identities = 6/38 (15%), Positives = 21/38 (55%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
+++ R++ KK ++ +++ ++ EK K + ++
Sbjct: 122 VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
Score = 28.0 bits (61), Expect = 1.3
Identities = 7/45 (15%), Positives = 24/45 (53%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+ +E + + ++++ ++ +E K ++E ++K KK ++
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 137
Score = 25.3 bits (54), Expect = 9.6
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 132 EKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ ++E+RK ++ K +++ ++K K L+
Sbjct: 104 KWREEQRKRLQELDAASKVMEQEWREKAKKDLE 136
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 36.4 bits (83), Expect = 0.002
Identities = 9/57 (15%), Positives = 26/57 (45%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+E L+ +K + + KD+ ++E + + +E + + + + + + AL
Sbjct: 301 SERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGAL 357
Score = 31.8 bits (71), Expect = 0.084
Identities = 6/49 (12%), Positives = 24/49 (48%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
N + +R ++ +K + + + + KE + ++ +E + + + + +
Sbjct: 298 NFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQ 346
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.003
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 10/106 (9%)
Query: 1 MASIDYASNSDPGTGLQKDI---ADA-RCTALSYLIETIPANFPGDRLDHYTTQAVKGWK 56
M +D S +D+ AD + I I N P + H+ + K +
Sbjct: 1631 MG-MDLYKTSK----AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 57 RKLSGIFRTPNVKGFEGSRSR-DLITSMLTRAGFRFQEFLLSPTQF 101
S + V G + I T FR ++ LLS TQF
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 36.2 bits (84), Expect = 0.003
Identities = 9/55 (16%), Positives = 19/55 (34%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
TE N + E+K ++ K + + E E+ +K + +
Sbjct: 954 TELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008
Score = 29.2 bits (66), Expect = 0.60
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
L +K ++ K + K + E+ +K E+
Sbjct: 964 LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 36.1 bits (83), Expect = 0.003
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ ++ ++ ++ E+K++++ E+ + KKKKKKKKK
Sbjct: 59 ESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
Score = 35.7 bits (82), Expect = 0.004
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
E ++ ++ +++++ E ++ + KKKKKKKKK+
Sbjct: 59 ESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110
Score = 35.3 bits (81), Expect = 0.006
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+K+ + + ++ E K+ +E + + KKKKKKKK
Sbjct: 57 DKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
Score = 33.4 bits (76), Expect = 0.024
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E+ + ++ + EE KKK++KKKK K
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGP 48
Score = 33.4 bits (76), Expect = 0.025
Identities = 10/48 (20%), Positives = 25/48 (52%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ ++ ++ + K+++E ++ + ++KKKKKKK+ K
Sbjct: 64 VDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 33.0 bits (75), Expect = 0.033
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+ + + ++ + KE+ ++++ + KKKKKKK
Sbjct: 56 PDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKK 104
Score = 32.6 bits (74), Expect = 0.041
Identities = 10/50 (20%), Positives = 30/50 (60%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
++ ++ E+ +DK++ ++++ + + K+++KKKKK+ K + +
Sbjct: 65 DEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 32.6 bits (74), Expect = 0.052
Identities = 9/50 (18%), Positives = 22/50 (44%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K+ + ++ ++ + ++R E+ + + + KKKKKK
Sbjct: 55 EPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKK 104
Score = 31.4 bits (71), Expect = 0.11
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ R+ ++ + K++ E+ + + +++KKKKKK+ K
Sbjct: 64 VDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 31.4 bits (71), Expect = 0.12
Identities = 8/51 (15%), Positives = 19/51 (37%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K + ++ + ++K ++E + + KKKKK
Sbjct: 54 QEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKK 104
Score = 29.5 bits (66), Expect = 0.45
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
E+ KK ++KKK+ K E++ KE + ++ +++AL+
Sbjct: 25 EGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALE 77
Score = 29.1 bits (65), Expect = 0.67
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E + + +E KKK++KKKK K +
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPS 49
Score = 28.7 bits (64), Expect = 0.86
Identities = 11/53 (20%), Positives = 16/53 (30%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ +EE +E KKK +KKK K + D
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPD 57
Score = 25.7 bits (56), Expect = 8.3
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+E KKK +KKKK + ++E K+ + ++ ++ D
Sbjct: 26 GAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALED 78
Score = 25.7 bits (56), Expect = 9.4
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
L + KE+ + + + K+K++KKKK K
Sbjct: 71 LERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 36.0 bits (83), Expect = 0.004
Identities = 11/54 (20%), Positives = 34/54 (62%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
L KK++ +E + + + ++EE++ ++ + EKKK +++ +++ ++++ A
Sbjct: 918 LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971
Score = 35.6 bits (82), Expect = 0.005
Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 108 EWLRNKKKKRKEKKKKKDK-KKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E L+ + + E ++ + + KK+E ++ + E + +EEE++ ++ + +KKK
Sbjct: 899 EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952
Score = 34.8 bits (80), Expect = 0.010
Identities = 10/57 (17%), Positives = 28/57 (49%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ + KK++ ++ + E + E+ +E ++ + EKKK +++ + L+
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965
Score = 33.7 bits (77), Expect = 0.026
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
L +++K K K K+K + + + + K+E+K ++E +K K+K + + + +
Sbjct: 1020 LAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHE 1074
Score = 33.3 bits (76), Expect = 0.030
Identities = 10/53 (18%), Positives = 29/53 (54%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
TE ++ R KK + ++ + + + +EE+++ ++ + +KKK +++
Sbjct: 904 ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956
Score = 33.3 bits (76), Expect = 0.034
Identities = 9/53 (16%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKK-EKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ + + +++++ ++ + EKKK +++ + +++ EE++ ++K + +K D
Sbjct: 930 HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982
Score = 32.9 bits (75), Expect = 0.043
Identities = 11/55 (20%), Positives = 28/55 (50%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ ++ + +KKK ++ E++ E+ + ++K + EK K KK ++ +
Sbjct: 939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDIL 993
Score = 31.0 bits (70), Expect = 0.18
Identities = 11/55 (20%), Positives = 30/55 (54%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
L+ +KKK +++ +++ ++EE ++K + EK + + KK + ++ +
Sbjct: 946 LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000
Score = 30.6 bits (69), Expect = 0.23
Identities = 10/54 (18%), Positives = 31/54 (57%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
L + ++ + + K ++ ++ + E R EE++++ ++ + +KKK +++ L
Sbjct: 907 LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL 960
Score = 28.6 bits (64), Expect = 1.1
Identities = 9/55 (16%), Positives = 25/55 (45%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
L K+K + + ++ + + + + K + KKEEE + + + + + +
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112
Score = 28.3 bits (63), Expect = 1.3
Identities = 9/48 (18%), Positives = 24/48 (50%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
E+++K K + K + E + + ++E+K +++ +K K+
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
Score = 27.9 bits (62), Expect = 1.6
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+E++K K+ K K + + + E + K+EEK +++ +K K+K
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
Score = 27.9 bits (62), Expect = 1.7
Identities = 12/55 (21%), Positives = 27/55 (49%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
L K K + + + + KKEEK +++ ++ K+K E E ++ + + +
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Score = 27.1 bits (60), Expect = 3.0
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
L+ ++K R+E +K K K + + E+ E + + E K + KK+++ + AL
Sbjct: 1048 LKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102
Score = 27.1 bits (60), Expect = 3.5
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
L+ +K K KK + E + K +E+K EE +++
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024
Score = 26.7 bits (59), Expect = 4.8
Identities = 9/48 (18%), Positives = 25/48 (52%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ + +KE+K +++ +K K + + E ++ E + + + K + K
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
Score = 26.7 bits (59), Expect = 5.0
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
E + K K++K +++ +EEEK K K K K ++
Sbjct: 993 LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 34.8 bits (79), Expect = 0.007
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
L + R + + + ++K++ K+ K +K K +E+KKK+ K K K
Sbjct: 52 LVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102
Score = 34.8 bits (79), Expect = 0.008
Identities = 9/53 (16%), Positives = 29/53 (54%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+ + + + +KK+ ++ + +K + ++K++++ K K K+++ AL
Sbjct: 56 QATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMAL 108
Score = 33.6 bits (76), Expect = 0.017
Identities = 10/50 (20%), Positives = 27/50 (54%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ + + + + ++KK+ K+ K K+ K +++++K+ K K K+
Sbjct: 54 IGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKR 103
Score = 33.2 bits (75), Expect = 0.021
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ R ++KK K+ + KK K +E+KKK+ + K K+++ K D
Sbjct: 60 PQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEAD 113
Score = 31.7 bits (71), Expect = 0.072
Identities = 8/44 (18%), Positives = 25/44 (56%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ + ++ + + ++K++ ++ K ++ K ++KKKK+ K
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKT 98
Score = 30.9 bits (69), Expect = 0.17
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
R +++K+ K+ K KK + ++K+K++ K K + ++ K + +
Sbjct: 66 RPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 29.8 bits (66), Expect = 0.34
Identities = 10/50 (20%), Positives = 27/50 (54%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++K++ K+ K KK + +++K+K+ K K ++++ K + +
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 35.0 bits (81), Expect = 0.008
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
+ K E+ K+K + + ++ K K+K + KK
Sbjct: 733 KGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 34.0 bits (77), Expect = 0.016
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K K + KK + K K++ K RK K K+ + K + A+
Sbjct: 338 KIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAI 388
Score = 30.9 bits (69), Expect = 0.18
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K++ +K + K K++ + ++ K KK + K ++
Sbjct: 341 KEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKAR 392
Score = 30.6 bits (68), Expect = 0.25
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K + + K++ K ++ K K+ + K ++ K ++ D
Sbjct: 346 KAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDAD 397
Score = 30.2 bits (67), Expect = 0.27
Identities = 8/50 (16%), Positives = 17/50 (34%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K++ K +K K K+ + K +E K +++
Sbjct: 351 SKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIA 400
Score = 30.2 bits (67), Expect = 0.28
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ KK K K++ K + K +K + K ++ K +
Sbjct: 343 QAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKAR 392
Score = 29.4 bits (65), Expect = 0.54
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+K K++ K + K ++ + K EE K +++
Sbjct: 350 ASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFI 399
Score = 27.5 bits (60), Expect = 2.3
Identities = 8/49 (16%), Positives = 21/49 (42%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
L+ +K K KK K E+ + ++++ + + ++ K+
Sbjct: 359 LKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQEIKE 407
Score = 26.3 bits (57), Expect = 5.3
Identities = 7/50 (14%), Positives = 19/50 (38%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+K + KK + K + K ++E+ + ++ K+ +
Sbjct: 360 KANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQEIKEGD 409
Score = 26.3 bits (57), Expect = 5.6
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K K K++ KK + + K++ + +K K KK +
Sbjct: 325 TNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQ 374
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 33.3 bits (76), Expect = 0.024
Identities = 9/51 (17%), Positives = 30/51 (58%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ ++E + + KK+++E + + + + +++++ E K +K K+ ++ D
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFD 439
Score = 27.2 bits (60), Expect = 3.0
Identities = 9/38 (23%), Positives = 24/38 (63%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
KKK+ +E++ + + + K++ +++ K ++ K+ EE
Sbjct: 398 MRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEES 435
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 33.3 bits (76), Expect = 0.026
Identities = 5/45 (11%), Positives = 18/45 (40%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ K+ +++ + K++ + + +E + + K
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAP 672
Score = 30.6 bits (69), Expect = 0.24
Identities = 5/40 (12%), Positives = 17/40 (42%)
Query: 124 KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
KD K+ ++K + +K+ + + + + + +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPA 667
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 33.2 bits (76), Expect = 0.027
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ KE +K+ + +E+ ++ + K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.0 bits (73), Expect = 0.063
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
+ K+++K+++ E+K + K K+K E+E+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.0 bits (73), Expect = 0.064
Identities = 9/35 (25%), Positives = 24/35 (68%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
+ K+ +K++E ++K +R + K+K E+++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.0 bits (73), Expect = 0.067
Identities = 7/35 (20%), Positives = 23/35 (65%)
Query: 125 DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ K+ +K++E ++ ++ K ++K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.5 bits (69), Expect = 0.21
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
+ KE +K+++ ++K K K K EK++ E++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.5 bits (69), Expect = 0.23
Identities = 6/35 (17%), Positives = 21/35 (60%)
Query: 123 KKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+ K+ ++ ++ E++ K +E+ +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.7 bits (67), Expect = 0.36
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 129 KKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ K+ +KR+E ++K K K+K +K++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLE 338
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 32.8 bits (75), Expect = 0.036
Identities = 5/40 (12%), Positives = 13/40 (32%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
+ + + + EE K E ++ E+ +
Sbjct: 198 ELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 32.9 bits (74), Expect = 0.039
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+K + K + K ++K K+ R+++ KK KK KK KK A
Sbjct: 346 NHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAA 397
Score = 32.9 bits (74), Expect = 0.040
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K ++K KK +KK K+ KK ++ KK KK A
Sbjct: 353 KAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAA 403
Score = 32.2 bits (72), Expect = 0.069
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
++++K KK ++ K KK KK K+ KK KK KK +K
Sbjct: 361 KSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKP 412
Score = 31.8 bits (71), Expect = 0.089
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK +RK+ KK KK K+ +K KK ++K +KK ++K
Sbjct: 369 GKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKP 419
Score = 31.8 bits (71), Expect = 0.091
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+K +K ++K KK KK +K KK +K KK +KK
Sbjct: 361 KSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 31.4 bits (70), Expect = 0.13
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+N K + + + K +++ +K + +K KK KK KK KK A
Sbjct: 344 AKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAA 396
Score = 30.2 bits (67), Expect = 0.28
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
LR K + K + K E+K K+ ++KK ++ KK KK
Sbjct: 341 LRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVV 391
Score = 30.2 bits (67), Expect = 0.30
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ K ++K KK + +K K+ +K KK KK KK +
Sbjct: 355 AAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAAD 404
Score = 29.8 bits (66), Expect = 0.36
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K +++K KK KK KK K+ +K +++ +KK ++KK A
Sbjct: 371 KPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKPA 420
Score = 29.5 bits (65), Expect = 0.46
Identities = 16/104 (15%), Positives = 40/104 (38%)
Query: 59 LSGIFRTPNVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLRNKKKKRK 118
LS I + P + + + +L + + +L + ++ + + K K
Sbjct: 289 LSRILKMPRDPRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHK 348
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K + + ++K ++ ++K+ +K KK KK
Sbjct: 349 LRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVG 392
Score = 29.1 bits (64), Expect = 0.62
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
++K KK + KK KK K+ +K KK KK KK +
Sbjct: 360 AKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 29.1 bits (64), Expect = 0.63
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
L K +++ KK +KK K+ +K K+ K+ KK KK
Sbjct: 358 LEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPA 408
Score = 27.5 bits (60), Expect = 2.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
R K KK KK K K+ +K +KK E++ ++KK
Sbjct: 374 RKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 27.1 bits (59), Expect = 3.3
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+ ++KK K+ K KK KK K+ K+ +KK ++KK
Sbjct: 371 KPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 32.5 bits (74), Expect = 0.044
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ KE +K+++ ++K K K K EK++ E+++K+++ +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAE 423
Score = 32.1 bits (73), Expect = 0.057
Identities = 11/44 (25%), Positives = 30/44 (68%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K+++K+++ E+K + K K+K E+E+ +K++K+++ +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDM 420
Score = 30.6 bits (69), Expect = 0.23
Identities = 12/68 (17%), Positives = 32/68 (47%)
Query: 89 FRFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
+EF + F N+K++ E+K ++ K K++ +K+ K++K+++ +
Sbjct: 360 LSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLID 419
Query: 149 KKKKKKKK 156
+ +
Sbjct: 420 MNAEGDET 427
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 32.5 bits (73), Expect = 0.044
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ K + + KE+ K K+ K K+ K +K K +
Sbjct: 263 PNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDK 312
Score = 31.7 bits (71), Expect = 0.079
Identities = 12/58 (20%), Positives = 20/58 (34%)
Query: 103 TSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
SL + K + + K+D K + K +K K ++ K K K
Sbjct: 260 ASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKS 317
Score = 30.6 bits (68), Expect = 0.23
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK-----KKKKKKKKK 160
++ K+ + K K KK K +K K + K K KK K
Sbjct: 272 LSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 30.2 bits (67), Expect = 0.26
Identities = 11/60 (18%), Positives = 19/60 (31%)
Query: 101 FGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
L N K+ + + + K+ K K + KK + +K K K
Sbjct: 253 LKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDK 312
Score = 29.8 bits (66), Expect = 0.39
Identities = 10/57 (17%), Positives = 19/57 (33%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+++L+ + K K +E + K K ++ K KK K
Sbjct: 247 DDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAA 303
Score = 29.4 bits (65), Expect = 0.46
Identities = 11/48 (22%), Positives = 16/48 (33%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK + E K++ K K + KK K +K A
Sbjct: 261 SLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALA 308
Score = 29.4 bits (65), Expect = 0.56
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KK K ++ + + K K K ++ K +K K K ++D
Sbjct: 268 KKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSID 319
Score = 28.6 bits (63), Expect = 0.86
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
KK K + + K+ + + K KK + +K K K
Sbjct: 267 SKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSG 314
Score = 28.3 bits (62), Expect = 1.3
Identities = 12/60 (20%), Positives = 17/60 (28%)
Query: 103 TSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
L + + K KK + + +E K K K KK K A
Sbjct: 243 KELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTA 302
Score = 27.9 bits (61), Expect = 1.4
Identities = 12/52 (23%), Positives = 17/52 (32%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K + KK K + + KE+ K + K KK K A
Sbjct: 252 FLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAA 303
Score = 26.7 bits (58), Expect = 3.5
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK------KKKKKKKK 157
L E + K+ K K KK + ++ K K K K KK
Sbjct: 271 KLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTG 330
Query: 158 K 158
K
Sbjct: 331 K 331
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 32.5 bits (73), Expect = 0.047
Identities = 7/57 (12%), Positives = 20/57 (35%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ +R +K +K+ ++ ++E + E + K+ K +
Sbjct: 19 QQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSY 75
Score = 29.8 bits (66), Expect = 0.36
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
KK K ++K ++ ++ K K K + +K+ + ++
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER 60
Score = 29.0 bits (64), Expect = 0.55
Identities = 9/50 (18%), Positives = 23/50 (46%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
++ KK K ++K ++ + +K KE++ E +K+ + +
Sbjct: 11 SQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER 60
Score = 26.7 bits (58), Expect = 3.4
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
E + KK K ++K ++ + +K +EK+ ++
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAA 50
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 31.9 bits (72), Expect = 0.058
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
++ K +E+ KE ++ K E ++ +
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 31.9 bits (72), Expect = 0.069
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
YT L + ++ K D++ K+ ++ K E ++ +
Sbjct: 214 YTNGLYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 31.2 bits (70), Expect = 0.11
Identities = 3/39 (7%), Positives = 14/39 (35%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
++ +++ ++ K+ K E ++ +
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 32.2 bits (74), Expect = 0.071
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 110 LRNKKKKRKEKKKKKD--KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
L+ ++K E +K+KD + ++ EK R E++ +E+ + KK K+K+
Sbjct: 396 LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQ 449
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 31.7 bits (71), Expect = 0.085
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K++ KK+D+ K+ ++ + +K+ + + KK K + N
Sbjct: 302 LDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSN 350
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 30.9 bits (69), Expect = 0.14
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ + K ++RK + ++K + K +K E + E++ +K+K +K
Sbjct: 16 DEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGA 71
Score = 29.7 bits (66), Expect = 0.37
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
KK R EK +K +++K + K+++ + + +K + + +KK
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKK 58
Score = 27.8 bits (61), Expect = 1.7
Identities = 8/50 (16%), Positives = 22/50 (44%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
N +KK +K + K ++ + + K+ K + + +K + + +
Sbjct: 8 NVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEK 57
Score = 27.4 bits (60), Expect = 2.2
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
KK ++EK ++ + E++K + K++K + K
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKY 48
Score = 26.3 bits (57), Expect = 5.8
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ K + K++K + K ++ E EKK +E++K +K
Sbjct: 26 QRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPA 76
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 30.0 bits (68), Expect = 0.19
Identities = 5/51 (9%), Positives = 26/51 (50%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+R+ + K + K +++++E+R + + ++ + ++++++
Sbjct: 85 IRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
Score = 25.0 bits (55), Expect = 9.3
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKK 145
TE K K + ++++ D + + + EE++++
Sbjct: 97 TEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 30.5 bits (68), Expect = 0.21
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEE-------KKKEKRKEEKKKKEEEKKKKKKKKK 157
L+ ++ R KK + EKKK +DKKK ++ +K + + + + K+ K
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDK 423
Query: 158 KKKN 161
+KKN
Sbjct: 424 EKKN 427
Score = 29.7 bits (66), Expect = 0.42
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 103 TSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E K+ KE +K D+ KK + +K+K +++KK ++E K++K +
Sbjct: 347 VQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAE 404
Score = 28.6 bits (63), Expect = 1.0
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ K+ +++ +K + KK + ++K+ E+KKK +++ K++K L
Sbjct: 354 EAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQ 407
Score = 28.2 bits (62), Expect = 1.2
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
++ + K+K+ + K+ E++ EK KK ++EKKK + KKK
Sbjct: 343 RQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKS 388
Score = 27.0 bits (59), Expect = 3.3
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
L K + K ++ E K+ + E +KKEEE ++ ++ K+K A
Sbjct: 300 RCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEA 355
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 30.3 bits (68), Expect = 0.24
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ + K+EE + K+ +K E K K KK
Sbjct: 4 HHHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
Score = 27.6 bits (61), Expect = 2.2
Identities = 8/44 (18%), Positives = 13/44 (29%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K+E+ E K E+ + K K K
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAK 48
Score = 26.5 bits (58), Expect = 5.3
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K++E + K E+ + K K KK
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 29.8 bits (66), Expect = 0.30
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
W KK+K +K K + K + E+ E + +++E + K++ + K
Sbjct: 21 EEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFY 78
Score = 28.3 bits (62), Expect = 0.99
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K++R+E + K+K EK K + E+ + + + K+
Sbjct: 16 LKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKE 63
Score = 27.5 bits (60), Expect = 1.7
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
KR+ ++ +KK+K +K K E K ++ + + + L
Sbjct: 13 KVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKEL 64
Score = 26.7 bits (58), Expect = 3.5
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K +K + +++E EKK+K +K K + K
Sbjct: 5 AAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVI 46
Score = 26.3 bits (57), Expect = 4.8
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K EK K ++++ +K+++ +K K E K + ++
Sbjct: 5 AAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQ 52
Score = 26.3 bits (57), Expect = 4.8
Identities = 7/50 (14%), Positives = 20/50 (40%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ +K K + K + E+ E ++K+ + +++ + K
Sbjct: 31 KVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVS 80
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
protein binding; HET: MSE; 1.85A {Mus musculus}
Length = 253
Score = 29.8 bits (66), Expect = 0.31
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 80 ITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLR-NKKKKRKEKKKKKDKKKKKEEKKKEKR 138
I S LTR R + QF ++L + +++ + KK K ++ K+ R
Sbjct: 78 IGSALTRMCMRHRSIEAKLRQFSSALIDCLINPLQEQMEEWKKVANQLDKDHAKEYKKAR 137
Query: 139 KEEKKKKEEEKKKKKKKKKKKKN 161
+E KKK + K +KK KK
Sbjct: 138 QEIKKKSSDTLKLQKKAKKVDAQ 160
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 29.9 bits (68), Expect = 0.31
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 107 TEWLRNKKKKR-KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+ K KE K+ K+ ++ EK K +KKE +K+ + K
Sbjct: 49 LDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100
Score = 28.0 bits (63), Expect = 1.7
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 104 SLYTEW------LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+ Y EW L KK +K+ K+ K +E K+ EK+K EKK+ +K+
Sbjct: 37 AEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDL-IAEKEKLSNEKKEIIEKEA 95
Query: 158 KKKNALD 164
+ L
Sbjct: 96 EADKNLR 102
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic
acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 30.3 bits (68), Expect = 0.32
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
Y EW+ KK++ ++ K+ + +K K + K + KK +K
Sbjct: 525 YKEWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNL 577
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 30.0 bits (67), Expect = 0.34
Identities = 11/61 (18%), Positives = 28/61 (45%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+L ++ + ++ K+K D+ E K+ K ++++ KK K ++++
Sbjct: 257 NLVKKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTD 316
Query: 164 D 164
D
Sbjct: 317 D 317
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 29.5 bits (66), Expect = 0.36
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K +D K E K+K E KK KK +
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAES 188
Score = 27.2 bits (60), Expect = 2.6
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
Y + + + KRK + KK+ KK + + K+
Sbjct: 149 YEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 26.8 bits (59), Expect = 2.8
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K K + K+K + K++ KK + K+
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 29.5 bits (67), Expect = 0.40
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
L ++ +E K + + EE ++ + +KK
Sbjct: 228 LLHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKV 274
Score = 26.0 bits (58), Expect = 6.0
Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 2/46 (4%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++ K+ K EE KK + +K
Sbjct: 229 LHENVYTEEVLADIAKDMVNDPNYDSVKV--EETDDPNKKTRTVEK 272
Score = 26.0 bits (58), Expect = 7.0
Identities = 4/42 (9%), Positives = 11/42 (26%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ ++ + K + E+ KK +
Sbjct: 230 HENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVE 271
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.40
Identities = 14/105 (13%), Positives = 41/105 (39%), Gaps = 2/105 (1%)
Query: 57 RKLSGIFRTPNVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLRNKKKK 116
+ + +F V F+ +D+ S+L++ ++S +L W K++
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKE--EIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+K ++ + + K E+++ + +++ + N
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 29.7 bits (66), Expect = 0.43
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
L++ K K K K KK + +KK +R EE+ K E + +++ K+
Sbjct: 491 LKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIA 541
Score = 28.2 bits (62), Expect = 1.4
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K KK+ + + K K + K + KK + KKK +
Sbjct: 470 MMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQ 518
Score = 27.8 bits (61), Expect = 1.8
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
K K K+K KK + K++K K++ +++ K EEE+ + K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK 42
Score = 27.8 bits (61), Expect = 1.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
K + + K KK + ++KK +K +E+K K EE++ + K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK 42
Score = 27.8 bits (61), Expect = 1.8
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+R K K D K K+ K K+ + +KK + +++ K + +
Sbjct: 485 ADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQAT 532
Score = 27.0 bits (59), Expect = 3.4
Identities = 10/55 (18%), Positives = 22/55 (40%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+++ K +K + K + KKE+ + ++ + K K K K +
Sbjct: 456 CNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVV 510
Score = 27.0 bits (59), Expect = 3.5
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
KK + ++D K K + K K + KK E +KK ++ +++
Sbjct: 478 DAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMK 526
Score = 27.0 bits (59), Expect = 3.8
Identities = 9/53 (16%), Positives = 24/53 (45%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E + + + KK++ +++ K + + K + +K + KKK ++
Sbjct: 467 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQR 519
Score = 26.6 bits (58), Expect = 4.1
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ KK++ ++ K K + K + K +K + ++K ++ +++ K
Sbjct: 478 DAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMK 526
Score = 26.6 bits (58), Expect = 4.6
Identities = 9/61 (14%), Positives = 27/61 (44%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+ + + K +K++ D ++ + K + + + K ++ + KKK ++ + L
Sbjct: 465 TFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQL 524
Query: 164 D 164
Sbjct: 525 M 525
Score = 26.3 bits (57), Expect = 6.4
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
+NK K +K + KKK K+E++++ + E+++ E K
Sbjct: 3 KNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK 42
Score = 25.9 bits (56), Expect = 8.0
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K ++ + KKE+ +R + K + + K K KK ++
Sbjct: 462 PPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVES 512
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 29.6 bits (67), Expect = 0.46
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K+ + KK KE E+ +EEK+++EEEK +K K K L
Sbjct: 260 KDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLG 306
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 29.5 bits (67), Expect = 0.48
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 111 RNK----KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKE 146
RN ++KR + K+ E ++ + +
Sbjct: 461 RNIENWVQRKRPGSPAAQASKRASEMACQQPTQPPDADQT 500
Score = 26.8 bits (60), Expect = 3.6
Identities = 2/32 (6%), Positives = 13/32 (40%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
++K+ + K+ + ++ + + +
Sbjct: 468 QRKRPGSPAAQASKRASEMACQQPTQPPDADQ 499
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 29.1 bits (64), Expect = 0.49
Identities = 9/48 (18%), Positives = 24/48 (50%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+++ E + K+K +E K+ +R+ + + + K+ K++
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEA 175
Score = 25.6 bits (55), Expect = 7.7
Identities = 8/49 (16%), Positives = 20/49 (40%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KR+ + +K++ ++ KR ++ + + K+ K D
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEAD 176
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 29.6 bits (66), Expect = 0.50
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 106 YTEWLRNKKK---KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
Y +++ KK+ K+K K + K K + KE E + + K
Sbjct: 291 YKKYISEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIEYKTYYPY 350
Query: 163 LD 164
D
Sbjct: 351 GD 352
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 28.5 bits (64), Expect = 0.50
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
KE + + K+ + +++E KK K E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 27.3 bits (61), Expect = 1.3
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 124 KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
K+ + E K+ +K+E +K K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 27.3 bits (61), Expect = 1.3
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKK 145
K+ E + K +K+E +K + +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 27.3 bits (61), Expect = 1.4
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 125 DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ + + K +K E KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.9 bits (60), Expect = 1.7
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKK 144
K+ + + K+ EK++ K+ + +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.9 bits (60), Expect = 1.9
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 129 KKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+ + + K EK++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.9 bits (60), Expect = 2.0
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K+ + E ++ E+++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.1 bits (58), Expect = 3.4
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
++ + + K+ K E KK + +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 25.8 bits (57), Expect = 3.9
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEK 137
L + KR +K++ K+ K E
Sbjct: 79 LKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 25.8 bits (57), Expect = 4.9
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEE 147
L N ++ + + K+ + EKR+ +K K E
Sbjct: 73 LWNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 25.4 bits (56), Expect = 5.3
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+ E K+ + +K++ KK K
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGG 109
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.4 bits (65), Expect = 0.52
Identities = 11/57 (19%), Positives = 29/57 (50%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
L + KK + K+ ++K+++ E++K +++ +++ + +K KKK
Sbjct: 360 LQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGK 416
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 29.5 bits (67), Expect = 0.54
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K+++ + +E + +E ++KK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFAP 241
Score = 28.3 bits (64), Expect = 1.3
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+ K+KK + + K + + E+KK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 27.9 bits (63), Expect = 1.9
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
E K+ K E K+ + +E +E++ KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 27.5 bits (62), Expect = 2.5
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ K+KK E KE + ++ EE+K KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 26.8 bits (60), Expect = 4.4
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ D K+KK + ++ + + ++KK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 26.8 bits (60), Expect = 4.6
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
+ K+K + K+ + E ++++ KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 26.4 bits (59), Expect = 5.5
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ + K+K+ E KE + E ++KK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 29.6 bits (66), Expect = 0.56
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ + K+EE + K+ +K E K K KK
Sbjct: 4 HHHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
Score = 26.9 bits (59), Expect = 3.8
Identities = 8/44 (18%), Positives = 13/44 (29%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K+E+ E K E+ + K K K
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAK 48
Score = 25.7 bits (56), Expect = 9.3
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K++E + K E+ + K K KK
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 28.8 bits (64), Expect = 0.65
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
D ++ EEK+KEK K ++++ K + K +K + L
Sbjct: 153 NYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLG 195
Score = 25.7 bits (56), Expect = 7.1
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
++ ++K+K+K + ++RK+ K + + +K ++K + L
Sbjct: 153 NYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 201
Score = 25.3 bits (55), Expect = 8.7
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
Y + +R ++KRKEK K ++K+ K + K ++ ++K + +
Sbjct: 154 YADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAP 203
Score = 25.3 bits (55), Expect = 8.8
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
W + E+K+K+ K + +K+ + K +K E+K + +
Sbjct: 152 WNYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAP 203
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 29.2 bits (66), Expect = 0.66
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KE + K KE + + +EEKKK+EE+K K + K K+ L+
Sbjct: 244 KEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILE 290
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 28.2 bits (63), Expect = 0.69
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
K +KK + + KE+R K +K K + K +
Sbjct: 94 MIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVR 136
Score = 25.1 bits (55), Expect = 8.9
Identities = 7/46 (15%), Positives = 18/46 (39%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K+ +KK + R ++++ + +K K + K
Sbjct: 89 ARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGK 134
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 28.8 bits (64), Expect = 0.73
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K + EEK+KEK K +KK++ + +K+ +K + +D
Sbjct: 148 KYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKID 190
Score = 28.8 bits (64), Expect = 0.74
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
Y ++KRKEK K +KKK+ + +++ ++ +KK ++ + K
Sbjct: 149 YQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKT 198
Score = 26.9 bits (59), Expect = 2.8
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
W E+K+K+ K +KK+ R ++ +K EKK K + K
Sbjct: 147 WKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKT 198
Score = 25.8 bits (56), Expect = 6.2
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K + ++K+K+K + K+K+ + +++ +K +KK K L
Sbjct: 148 KYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 196
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 28.7 bits (64), Expect = 0.74
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
+ ++E+KK+ +EKK+ E++K ++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 26.4 bits (58), Expect = 4.7
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKE 146
+ +K++ K+ +EKK+ + + EK +++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 28.9 bits (65), Expect = 0.84
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 124 KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+ EEK + + +E + K+ ++ +++
Sbjct: 25 AKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREA 61
Score = 26.6 bits (59), Expect = 4.1
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEE 147
Y + L K+ E+K +DK + + K +E + E
Sbjct: 20 YKDMLAKKRDG-FEEKYPQDKIDEVFQWTTTKEYQELNFQRE 60
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 28.6 bits (64), Expect = 0.85
Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKR----KEEKKKKEEEKKKKKKKKKKKKN 161
Y+ ++ KKK+ + + D K+ + +K++ K++ + + K + + KN
Sbjct: 226 YSNFILIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKN 285
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning,
protein-DNA complex, heilx-turn- helix motif,
transcription factor; HET: BRU; 2.20A {Escherichia coli}
SCOP: a.4.14.1
Length = 178
Score = 28.3 bits (63), Expect = 0.89
Identities = 5/44 (11%), Positives = 18/44 (40%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
++K + + + E + ++ + +++ K K+K
Sbjct: 135 DEKGRDPNTVDAFNGQTDAERDAEAGDGQDGEDGDQDGKDAKEK 178
Score = 27.9 bits (62), Expect = 1.2
Identities = 6/47 (12%), Positives = 18/47 (38%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
E+L K + + + + + ++ + ++ K K+K
Sbjct: 132 EFLDEKGRDPNTVDAFNGQTDAERDAEAGDGQDGEDGDQDGKDAKEK 178
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 28.9 bits (65), Expect = 0.98
Identities = 3/41 (7%), Positives = 19/41 (46%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+E ++++ ++ + EE+ + +++++ +
Sbjct: 729 QESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 27.3 bits (61), Expect = 2.6
Identities = 4/40 (10%), Positives = 20/40 (50%)
Query: 124 KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
++++K + + E +++ + K +++++ + L
Sbjct: 732 RERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRTPL 771
Score = 27.3 bits (61), Expect = 2.9
Identities = 4/41 (9%), Positives = 20/41 (48%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
++ +E++K + + ++ + + K E++++ +
Sbjct: 729 QESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 27.0 bits (60), Expect = 3.5
Identities = 4/43 (9%), Positives = 19/43 (44%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
R ++ +++ K + +E++ K +++++ +
Sbjct: 727 RFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 27.0 bits (60), Expect = 4.2
Identities = 2/42 (4%), Positives = 19/42 (45%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++ ++ +K + ++++ + K +++++ +
Sbjct: 728 FQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 28.3 bits (62), Expect = 1.1
Identities = 8/56 (14%), Positives = 24/56 (42%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ E + +K+ K + ++K +K + +E ++ + + + +K N
Sbjct: 47 FAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGN 102
Score = 27.5 bits (60), Expect = 2.1
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
KK++ + K K +KK K K + + ++ + K+ ++ +
Sbjct: 42 KKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYR 88
Score = 26.8 bits (58), Expect = 4.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
KKKR+ + K K+ +K+ K RK +K E+ K K+ ++
Sbjct: 39 TLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYR 88
Score = 26.4 bits (57), Expect = 5.2
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+ KKK + KK++ + K KR +K + +K ++K +K
Sbjct: 27 KTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHY 79
Score = 25.6 bits (55), Expect = 8.9
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
E L+ K++ E K K+ +KK + ++ R++ +K + K+ ++ + +
Sbjct: 38 ETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTE 90
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 28.5 bits (63), Expect = 1.1
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
LR + + KK K + + E K + + + + K + +
Sbjct: 97 LRKQLAEALGKKYKIGIRGIEVESFIIKVPADHELRMLKVPYIKSMENIEGG 148
Score = 25.8 bits (56), Expect = 9.1
Identities = 10/55 (18%), Positives = 17/55 (30%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
Y + RK+ + KK K + E K + + + K K
Sbjct: 87 YVRVHDAIFRLRKQLAEALGKKYKIGIRGIEVESFIIKVPADHELRMLKVPYIKS 141
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 28.3 bits (62), Expect = 1.1
Identities = 8/51 (15%), Positives = 19/51 (37%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
++ + + K ++EK KR + ++ + K K K +
Sbjct: 337 FGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMIS 387
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 28.3 bits (64), Expect = 1.1
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKE--EKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
L+ ++K E +K+KD + + EK R E++ +E+ + KK K+K+
Sbjct: 396 LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQ 449
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 28.2 bits (63), Expect = 1.2
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKE 146
L++ ++ +KKKKK K E + EE + +
Sbjct: 363 ALLQSSASRKTQKKKKKKASKTAENATSGETLEENEAGD 401
Score = 27.0 bits (60), Expect = 3.4
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
K + +K KKKKK+ K + + EE +
Sbjct: 362 KALLQSSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 26.3 bits (58), Expect = 5.9
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEE 147
K +KK KKK + + E ++ E
Sbjct: 370 SRKTQKKKKKKASKTAENATSGETLEENEA 399
Score = 25.5 bits (56), Expect = 9.5
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 123 KKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K + + + E K + +K +++KKKK K + + +
Sbjct: 351 KSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSGE 392
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 28.1 bits (62), Expect = 1.2
Identities = 8/51 (15%), Positives = 16/51 (31%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
++ K K K EK + + ++ K + +K L
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKL 71
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 28.4 bits (64), Expect = 1.2
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 83 MLTRAGFRFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEK 142
M + + L P G + KK R K+K+ E KKE +
Sbjct: 1 MGKAENYELYQVELGPGPSGD--MAAKMSKKKAGRGGGKRKEK----LENMKKEMEINDH 54
Query: 143 KKKEEE 148
+ E
Sbjct: 55 QLSVAE 60
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 28.0 bits (62), Expect = 1.3
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
+ ++KR+ + K KK K+ ++K K + K +
Sbjct: 148 KQTLIEKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
Score = 27.2 bits (60), Expect = 2.1
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K+ +K EEK++ + K KK ++ +KK+
Sbjct: 147 GKQTLIEKLEEKRRARAKTYHDKKVKQADARKKELAAPA 185
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 28.1 bits (62), Expect = 1.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
+ EKK + KEEKK +E++ + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 28.1 bits (62), Expect = 1.4
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 108 EWLRNKKKKRKEKKKKKD------KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+ +KK ++ ++ + KK +++ K+E K KK E +K +
Sbjct: 390 QISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQ 446
Score = 25.8 bits (56), Expect = 8.2
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+KK K+ + +++ +K +++ K++ K KK
Sbjct: 395 QKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKT 433
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 28.1 bits (63), Expect = 1.4
Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 80 ITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRK 139
+ M R GF + P G YT + + + ++++E +
Sbjct: 236 VQGMAQRCGFELVDVQRLPVHGGEVRYTLARQGSRTPSAAVAQLLAAEREQELSDMATLR 295
Query: 140 EEKKKKEEEKKK-----KKKKKKKKK 160
+ + + + + + +
Sbjct: 296 AFAGNVVKIRDELTALLHRLRAEGRS 321
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 27.4 bits (60), Expect = 1.5
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K + K ++ K KK EKK+ RK + K + KK + KK K+ A
Sbjct: 102 HKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGA 153
Score = 27.4 bits (60), Expect = 1.8
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+N K+ + +K ++ K++K + K+ +K + K K KK + K
Sbjct: 96 KNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKT 147
Score = 26.7 bits (58), Expect = 3.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++ K+KK +KK+ + K + K + KK E +K K+ K K
Sbjct: 108 EKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGK 157
Score = 25.5 bits (55), Expect = 7.2
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E + +K KK + +K +E K+K+ EKK+ + + + K K KK
Sbjct: 90 EEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAET 144
Score = 25.5 bits (55), Expect = 7.5
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
++ K+K+ + K+ ++ + K+ + +K + ++ K+ K KK
Sbjct: 110 AVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 25.5 bits (55), Expect = 8.4
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K + ++KK D +KK+ ++K + + + KK E KK K+ K
Sbjct: 107 AEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGG 156
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 28.1 bits (62), Expect = 1.5
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+Y + ++ +KK K + KKK + + +KK + +KK + +++
Sbjct: 238 EMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293
Score = 27.7 bits (61), Expect = 1.7
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
KK ++ +KK +++ K+KR K +KK + +KK
Sbjct: 241 KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLR 289
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 27.7 bits (61), Expect = 1.6
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 125 DKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
K E++ K+K+ EE++ K E
Sbjct: 304 GVTKAAEKQMKDKQDEEQRLKLEHHHHH 331
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 27.4 bits (61), Expect = 1.9
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
EK+ + + E+++ +E + EEE ++ + A
Sbjct: 4 GEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEA 48
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 27.9 bits (61), Expect = 2.0
Identities = 11/72 (15%), Positives = 22/72 (30%)
Query: 89 FRFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEE 148
F F + +GT + + +K K + +E+ K +EE+
Sbjct: 537 FPFNPAKIKKDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEED 596
Query: 149 KKKKKKKKKKKK 160
K+
Sbjct: 597 GYNMSDPISKRS 608
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 27.6 bits (61), Expect = 2.0
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 93 EFLLSPTQFGTSLYTEWLRNKKKKRKEKKK-------KKDKKKKKEEKKKEKRKEEKKKK 145
+F+ QF ++ K R+ + K ++K+ + K KKK
Sbjct: 307 KFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKK 366
Query: 146 EEEKKKKKKKKKK 158
+ K K+ K
Sbjct: 367 AKTGAAGKFKRGK 379
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 27.7 bits (61), Expect = 2.0
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+ RK ++ K KK + K+ K+ K ++K + K K +
Sbjct: 251 HAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQ 296
Score = 26.6 bits (58), Expect = 4.8
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ + KK K K+ K+ + ++K + + K + +
Sbjct: 260 RVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 27.5 bits (61), Expect = 2.0
Identities = 10/56 (17%), Positives = 22/56 (39%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
Y ++ KK + + + K D + K + + + K+K + K + K
Sbjct: 227 YKNYILTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNKCECLNKHIDDK 282
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 27.1 bits (60), Expect = 2.2
Identities = 1/36 (2%), Positives = 1/36 (2%)
Query: 122 KKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
K
Sbjct: 142 KAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 177
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 27.5 bits (61), Expect = 2.2
Identities = 8/55 (14%), Positives = 19/55 (34%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
Y +W+ KK + K K E+ + ++E + + + +
Sbjct: 231 YDQWITRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENE 285
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 27.2 bits (61), Expect = 2.3
Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 108 EWLRNKKKKRKEKKKK---KDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
EW+ N + K + K + ++ + + K AL
Sbjct: 238 EWMMNYLTEFDGKPFQSVSKVDESLEKLADGDLGTLVPRGSMAISDPNSSSVDKLAAAL 296
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 27.7 bits (60), Expect = 2.4
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ L N ++ K++KD+ K+ K E+ +KE K KK K L+
Sbjct: 1129 FDCKLLNPSLQKVADKRRKDQFKRLIAGCIGKPLGEQFRKEVHIKNLPSLFKKTKPMLE 1187
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 27.3 bits (60), Expect = 2.6
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
R K K + + +++++ ++ E RK K++E K+
Sbjct: 17 RRTNFKNKGRFSADELRRRRDTQQVELRKA---KRDEALAKR 55
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 27.1 bits (59), Expect = 2.6
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 99 TQFGTSLYTEWLRNKKKKRKE-----KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
+ + + + K+ KE +K +K KK +E + K+ KEE+ +
Sbjct: 120 KNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISR 179
Query: 154 KKKKKKKNAL 163
+ K +L
Sbjct: 180 EANSKADPSL 189
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 26.5 bits (58), Expect = 2.8
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
W K K+ K+ +++ K EK K E+ + K ++ KK
Sbjct: 52 VWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEEAKK 101
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 27.2 bits (61), Expect = 3.0
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
R+ + K+ + K+ K + +K +EE ++ + +
Sbjct: 325 RSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 369
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 27.2 bits (59), Expect = 3.1
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 99 TQFGTSLYTEWLRNKKKKRKE-----KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
+ + + + K+ KE +K +K KK +E + K+ KEE+ +
Sbjct: 120 KNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISR 179
Query: 154 KKKKKKKNAL 163
+ K +L
Sbjct: 180 EANSKADPSL 189
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 27.0 bits (60), Expect = 3.2
Identities = 3/35 (8%), Positives = 15/35 (42%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
+ K++ ++ ++ +E + E +++
Sbjct: 24 RNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFRRE 58
Score = 26.7 bits (59), Expect = 4.0
Identities = 6/44 (13%), Positives = 19/44 (43%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
++ E ++ K++ EE +R +E + + +++
Sbjct: 15 EQDEYQELFRNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFRRE 58
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 26.6 bits (58), Expect = 3.2
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++ KE+ KK +KK ++ + K ++ + K ++ K K
Sbjct: 110 AALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKIGGG 158
Score = 25.4 bits (55), Expect = 8.2
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ ++ K++ KK +++KK K+ E K ++ + K ++ K
Sbjct: 103 VRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKG 152
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 26.7 bits (58), Expect = 3.3
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 133 KKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
K + + + E + K ++ K+ L
Sbjct: 239 KDDAQGRTLRDVGELTRSSTKTRRSIKRPELG 270
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 26.7 bits (60), Expect = 3.3
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 123 KKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
D +++ E ++K +E+ E+ + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 26.4 bits (59), Expect = 4.0
Identities = 5/47 (10%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
L+ + + ++ +++ + +K+ ++K ++ + +K+K
Sbjct: 142 LFFDRMTDQVLDSI---REELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 25.6 bits (57), Expect = 8.2
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
+ ++ + EKK E++ + E ++K+K
Sbjct: 149 DQVLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2;
signaling protein, NPY motif, binding pocket; 2.11A
{Homo sapiens} PDB: 1y2o_A 1wdz_A
Length = 253
Score = 26.8 bits (58), Expect = 3.4
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
E+K + D + KK + ++ K +K + + KK +KK+
Sbjct: 109 EQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQ 152
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 27.0 bits (59), Expect = 3.4
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K + K K++ + K+ + K +EE+ + K
Sbjct: 252 AFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAG 295
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog;
MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP:
c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Length = 189
Score = 26.5 bits (59), Expect = 3.5
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
+K RK+ +K+ E+ +++ +K K K
Sbjct: 27 DKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKT 70
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A
{Danio rerio} PDB: 2c2v_S 2oxq_C
Length = 179
Score = 26.5 bits (58), Expect = 3.7
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
LR KKKR ++K + ++ E K +KE E + K+ +N D
Sbjct: 19 LRIAKKKRWNSIEEK-RISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGD 72
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 26.8 bits (59), Expect = 3.7
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K + +++ +++ EKK E+ +EE K K +
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPT 313
Score = 26.4 bits (58), Expect = 4.6
Identities = 8/53 (15%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 113 KKKKRKEKKKKKDKKKK---KEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+++ R++ ++K + +++ K K E + + K+++K A
Sbjct: 274 QQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTA 326
Score = 25.6 bits (56), Expect = 9.3
Identities = 4/51 (7%), Positives = 20/51 (39%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
L +++ + + ++ K ++ + + + K + + K++
Sbjct: 270 LAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEE 320
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 26.6 bits (58), Expect = 3.7
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
K ++ + + K+ KK K+ KK K + K+K K K
Sbjct: 100 VRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVS 149
Score = 25.4 bits (55), Expect = 8.9
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+ KE KK K KK + + K++ K K +
Sbjct: 107 QAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPR 152
Score = 25.0 bits (54), Expect = 9.4
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
R + + ++ KK + KK K + K++ K K +
Sbjct: 105 REQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPR 152
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 27.0 bits (60), Expect = 3.8
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KE + K K+ + +E EEK ++E+E K+ + K K L
Sbjct: 514 KEFEGKTLVDITKDFELEET-DEEKAEREKEIKEYEPLTKALKEILG 559
>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3j16_C 3u5g_G
Length = 236
Score = 26.6 bits (58), Expect = 3.8
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
++KR ++ K + + E E + K+ E K +K + +K++ ++L
Sbjct: 185 QRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSL 234
Score = 25.5 bits (55), Expect = 8.5
Identities = 8/50 (16%), Positives = 26/50 (52%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
R ++K+ + K ++ + ++E + + K+ E + +K + +K++
Sbjct: 182 QRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRA 231
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 27.1 bits (60), Expect = 4.0
Identities = 13/75 (17%), Positives = 25/75 (33%)
Query: 90 RFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
F + L + + T+ Y + N++ +K + K E K K EK
Sbjct: 1847 YFIDGLRALVKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEK 1906
Query: 150 KKKKKKKKKKKNALD 164
++ K+
Sbjct: 1907 ERWLNTTKQFSKTSQ 1921
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 26.8 bits (60), Expect = 4.0
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
KE + K K+ + +E EEK ++E+E K+ + K K L
Sbjct: 242 KEFEGKTLVDITKDFELEET-DEEKAEREKEIKEYEPLTKALKEILG 287
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 26.8 bits (59), Expect = 4.2
Identities = 3/32 (9%), Positives = 11/32 (34%)
Query: 129 KKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ ++ + R + + K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSN 35
Score = 26.5 bits (58), Expect = 5.4
Identities = 3/30 (10%), Positives = 13/30 (43%)
Query: 134 KKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
++ + ++ + + K+ +K N +
Sbjct: 8 QEPQNRDISSRSNGKNPFKRSTGRKVSNVI 37
Score = 26.1 bits (57), Expect = 6.4
Identities = 2/33 (6%), Positives = 12/33 (36%)
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
++ ++ + + + + K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 26.1 bits (57), Expect = 4.4
Identities = 7/47 (14%), Positives = 18/47 (38%)
Query: 95 LLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEE 141
+ S T + + +R + + + K ++ +K E K +
Sbjct: 60 VYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQ 106
Score = 25.3 bits (55), Expect = 7.8
Identities = 6/48 (12%), Positives = 19/48 (39%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
Y ++ K+ K+ + + E K++ ++ ++ + K
Sbjct: 57 YKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCK 104
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 26.4 bits (59), Expect = 4.5
Identities = 5/38 (13%), Positives = 18/38 (47%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEK 142
L+ E L K++ + + + + ++E + ++ +
Sbjct: 154 LFFERLPKPKREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.0 bits (58), Expect = 5.1
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKK 144
KR+ + + + +K+ +E +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 25.6 bits (57), Expect = 6.8
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
K++ + + + + +KE K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_F
Length = 213
Score = 26.3 bits (57), Expect = 4.6
Identities = 1/44 (2%), Positives = 1/44 (2%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
A
Sbjct: 2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 45
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 26.8 bits (58), Expect = 4.7
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K+R ++ + + + E + E +EEK++K KK + + +
Sbjct: 3 KRRPKEAEPEQVAPETPEDRDEDEREEKRRKTTRKKLESHTVPVQSRS 50
>3vuu_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.09A {Plasmodium falciparum}
Length = 305
Score = 26.3 bits (58), Expect = 4.8
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 106 YTEWLRNKKK-----KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
Y EW +K K K + K E E+ + + KK + +
Sbjct: 245 YEEWYNKRKTEWTEQSIKYNNDKINYTDIKTLSPSEYLIEKCPECKCTKKNLQDVFELTF 304
Query: 161 N 161
+
Sbjct: 305 D 305
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
splicing, adenine, mRNA processing, nucleus,
phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
Length = 115
Score = 25.8 bits (57), Expect = 5.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 134 KKEKRKEEKKKKEEEKKKKKKK 155
+ +K + KKKEE+ K K+K
Sbjct: 85 NRAFQKMDTKKKEEQLKLLKEK 106
>2zfn_A RTT109, regulator of TY1 transposition protein 109; histone H3
lysine 56 acetylation, DNA damage, DNA repair, NU
transcription; HET: ALY ACO; 1.90A {Saccharomyces
cerevisiae} PDB: 2rim_A 3q33_A* 3q35_A* 3q66_C* 3q68_C*
3d35_A* 3qm0_A* 3cz7_A*
Length = 460
Score = 26.4 bits (57), Expect = 5.0
Identities = 7/53 (13%), Positives = 15/53 (28%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
+T + + K++ E+ + K +KK K
Sbjct: 404 FTNIRDFLLLRMATNLQSLTGKREHRERNQPVPASNINTLAITMLKPRKKAKA 456
>3vuv_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.11A {Plasmodium falciparum}
Length = 339
Score = 26.4 bits (58), Expect = 5.1
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 106 YTEWLRNKKK-----KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
Y EW +K K K + K E E+ + + KK + +
Sbjct: 279 YEEWYNKRKTEWTEQSIKYNNDKINYTDIKTLSPSEYLIEKCPECKCTKKNLQDVFELTF 338
Query: 161 N 161
+
Sbjct: 339 D 339
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 25.8 bits (56), Expect = 5.1
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
R+ K + ++ +++ K KE+KK EK + +K + + K K++
Sbjct: 94 RSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQ 142
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer,
anticancer drug design; HET: YCF; 1.77A {Homo sapiens}
PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A*
2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A*
2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Length = 322
Score = 26.5 bits (59), Expect = 5.1
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 77 RDLITSMLTR-AGFRF--QEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEK 133
DL+ +L RF +E L P WL+++ KRK + ++ +
Sbjct: 252 LDLVKKLLVVDPKARFTTEEALRHP----------WLQDEDMKRKFQDLLSEENESTALP 301
Query: 134 KKEKRKEEKKKKEEE 148
+ + +K+ E
Sbjct: 302 QVLAQPSTSRKRPRE 316
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 26.2 bits (57), Expect = 5.2
Identities = 7/49 (14%), Positives = 14/49 (28%)
Query: 71 FEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLRNKKKKRKE 119
+ + + AG++ + + L T W R R
Sbjct: 158 PTPDSADEWLAPRYAEAGWKLADCRYLEPEEVAGLETSWTRRLHSSRDR 206
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 26.5 bits (59), Expect = 5.3
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 104 SLYTEWLRNKKKKRKEKKKKK-----DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKK 158
YT K KK +K E ++E + ++K + + +
Sbjct: 494 EAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDR- 552
Query: 159 KKNALD 164
KN L+
Sbjct: 553 -KNTLE 557
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 26.2 bits (57), Expect = 5.4
Identities = 9/57 (15%), Positives = 25/57 (43%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
L + + + KRK ++ ++ +K + ++ + K + EK K++ +
Sbjct: 125 LENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMA 181
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase,
pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces
cerevisiae} PDB: 3uai_A
Length = 400
Score = 26.3 bits (58), Expect = 5.5
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
+KKK+ + K DK + E E+ K+E + ++
Sbjct: 355 VAQKKKQMKADGKLDKYGRVNENTPEQWKKEYVPLDNAEQHH 396
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 25.9 bits (56), Expect = 5.6
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
EK K D + K+ + + + + EK + + ++K
Sbjct: 107 EKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRD 150
Score = 25.9 bits (56), Expect = 6.1
Identities = 11/91 (12%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 73 GSRSRDLITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEE 132
S + ++ +L + + + + + L++ +K K + + E
Sbjct: 66 QSSTSQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYE 125
Query: 133 KKKEKRKEEKKKKEEEKKK--KKKKKKKKKN 161
+ R +K E + +K+ K ++
Sbjct: 126 IEYRHRAANLEKCMSELWRMERKRDKNAREM 156
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 26.1 bits (57), Expect = 5.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 135 KEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+E + +K+ ++ KK K KK K A+
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKLAI 181
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 26.1 bits (56), Expect = 5.8
Identities = 14/108 (12%), Positives = 33/108 (30%)
Query: 57 RKLSGIFRTPNVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLRNKKKK 116
S + + + F ++++S L + E T L + +
Sbjct: 59 HLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQF 118
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
++ K+ K+ + + KK++ K K + D
Sbjct: 119 KERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTED 166
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 26.0 bits (56), Expect = 6.1
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 99 TQFGTSLYTEWLRNKKKKRKE-----KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKK 153
+ Y + + K+ KE +K +K KK +E + K+ KEE +
Sbjct: 111 KNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTR 170
Query: 154 KKKKKKKNAL 163
+ K + ++
Sbjct: 171 EMNSKTEQSV 180
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 26.4 bits (59), Expect = 6.3
Identities = 6/50 (12%), Positives = 16/50 (32%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
K + ++ + + ++E + K+ KKK+
Sbjct: 732 KVEGQRGGRPTGSGQPRQERGAPRGQSAPPANNAMAALFANAKQLKKKHH 781
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 26.2 bits (58), Expect = 6.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 139 KEEKKKKEEEKKKKKKKKKKKKNA 162
K ++E KK+KK+ + KK A
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKA 495
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 26.1 bits (56), Expect = 6.5
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKK---KEKRKEEKKKKEEEKKKKKKKKKKKKN 161
E R K + + K + ++K E+ KE+ +E K+ EK + + + K+
Sbjct: 490 EVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ 546
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 25.6 bits (57), Expect = 6.9
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 117 RKEKKKKKDKKKKKEEKKKEKRKEEKK 143
+++K +K+ K+ +K++K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 25.2 bits (56), Expect = 9.8
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEK 142
KRK+ +K+ + +KK++ K E
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 25.2 bits (56), Expect = 9.8
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKE 140
L+ + L K+K+ EK+ K+ +KK+K + +
Sbjct: 146 LFVDKLSILKRKKFEKELKELQKKQKHKLEHHHHHH 181
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A
{Streptococcus pyogenes serotype M6}
Length = 179
Score = 25.6 bits (57), Expect = 7.2
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 114 KKKRKEKKKKKDKKKKKEE 132
++ R+ KK K K++ +
Sbjct: 158 RQGRERKKIAKHLIKEQSD 176
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 25.4 bits (56), Expect = 7.3
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEK 142
K K + + K RK K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 25.9 bits (57), Expect = 7.6
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 11/67 (16%)
Query: 80 ITSMLTRAGFRFQEFL-LSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKR 138
+ +L++ + L L+P ++ KK DKK K K
Sbjct: 1 MAPVLSKDVADIESILALNPR----------TQSHAALHSTLAKKLDKKHWKRNPDKNCF 50
Query: 139 KEEKKKK 145
EK +
Sbjct: 51 HCEKLEN 57
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 25.7 bits (56), Expect = 7.7
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 135 KEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
EK + K E++ + +++ + A
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAA 178
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 25.9 bits (57), Expect = 7.7
Identities = 6/45 (13%), Positives = 18/45 (40%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKK 154
L N K+ + ++ + E E++++ +E ++
Sbjct: 103 LDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHV 147
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 25.6 bits (57), Expect = 7.9
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 107 TEWLRNKKKKR-KEKKKKKDKKKKKEEKKKEKR--KEEKKKKEEEKKKKKKK 155
LR+++ K E K++ K + +E + R + + E E ++ KKK
Sbjct: 47 INRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKK 98
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 25.7 bits (56), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 135 KEKRKEEKKKKEEEKKKKKKKKKKKK 160
EK + K +EE +KKK +KK K
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLK 176
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 25.6 bits (57), Expect = 8.2
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
KE + K K+ + +E EEK ++E+E K+ + K K L
Sbjct: 242 KEFEGKTLVDITKDFELEET-DEEKAEREKEIKEYEPLTKALKEIL 286
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed
coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A
{Homo sapiens} PDB: 3sde_B
Length = 261
Score = 25.4 bits (56), Expect = 8.7
Identities = 6/33 (18%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
K+++++ D+ ++ ++K E + E + E +
Sbjct: 228 KQQREQVDRNIREAKEKLE-AEMEAARHEHQLM 259
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 25.4 bits (55), Expect = 9.1
Identities = 9/55 (16%), Positives = 24/55 (43%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
++ + K K+ K++ + + + + +K KE K ++++ KK
Sbjct: 104 QKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKE 158
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 9.2
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 2 ASID-YASNSDPGTGLQKDI 20
AS+ YA +S P ++ +
Sbjct: 27 ASLKLYADDSAPALAIKATM 46
>2xu0_A Erythrocyte membrane protein 1; adhesion, virulence,
duffy-binding-like-DO; 2.06A {Plasmodium falciparum palo
alto}
Length = 487
Score = 25.5 bits (56), Expect = 9.3
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
Y EW+ K +E K+ K + +K K+ + K+ E KK
Sbjct: 378 IKYNEWIVKKL---EEFYKQNLKYSMEIQKWKKTKNNYYDKEFYENLDKKSYST 428
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 25.0 bits (54), Expect = 9.6
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
K R+ K+ K K K+ K K EKK + KK K
Sbjct: 98 KPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQSKKSDHLK 144
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 25.6 bits (56), Expect = 9.7
Identities = 5/57 (8%), Positives = 25/57 (43%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
Y +++ EK+ + ++++ +K ++ + + ++ + +K ++
Sbjct: 1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVK 1953
>1h6q_A TCTP, P23FYP, translationally controlled tumor protein;
tumor-associated protein, function unknown; NMR
{Schizosaccharomyces pombe} SCOP: b.88.1.2 PDB: 1h7y_A
Length = 168
Score = 25.3 bits (55), Expect = 10.0
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 94 FLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKK 135
F LSPT F Y +++ K K + ++ + ++ +K
Sbjct: 72 FRLSPTSFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKN 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.128 0.353
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,386,610
Number of extensions: 142164
Number of successful extensions: 5792
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3669
Number of HSP's successfully gapped: 1311
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.9 bits)