RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3546
(164 letters)
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 35.8 bits (82), Expect = 0.001
Identities = 16/90 (17%), Positives = 36/90 (40%)
Query: 73 GSRSRDLITSMLTRAGFRFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEE 132
S+ + +L + ++ + S + E L ++K + + KK +
Sbjct: 65 ESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQ 124
Query: 133 KKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
++ + + K + E KK +KK + KN
Sbjct: 125 TEQRSKGDALDKCQAELKKLRKKSQGSKNP 154
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 29.7 bits (67), Expect = 0.13
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
Query: 109 WLRNKKKKRKEKKKKKDK---------KKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
W + + K K K + E +K+ KEEK K +EE +K K+
Sbjct: 82 WRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 29.6 bits (66), Expect = 0.17
Identities = 6/31 (19%), Positives = 20/31 (64%)
Query: 125 DKKKKKEEKKKEKRKEEKKKKEEEKKKKKKK 155
+ K+ +K++E ++ ++ K ++K +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 29.2 bits (65), Expect = 0.25
Identities = 7/31 (22%), Positives = 20/31 (64%)
Query: 126 KKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
+ KE +K+ + +E+ ++ + K+K +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 28.4 bits (63), Expect = 0.36
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 119 EKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
+ K+++K+++ E+K + K K+K E+E+
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 28.4 bits (63), Expect = 0.38
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
+ K+ +K++E ++K +R + K+K E+++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 28.4 bits (63), Expect = 0.41
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 104 SLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKK 144
+ + KE +K+++ ++K K K K EK++
Sbjct: 291 MDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 28.0 bits (62), Expect = 0.49
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 127 KKKKEEKKKEKRKEEKKKKEEEKKKKKKKKK 157
+ +E +K + EEK ++ + K+K +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 28.0 bits (62), Expect = 0.51
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 129 KKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ K+ +KR+E ++K K K+K +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 26.9 bits (59), Expect = 1.3
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 130 KEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
+ K+ +++ E ++K K K+K +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 26.9 bits (59), Expect = 1.4
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 87 AGFRFQEFLLSPTQFGTSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKK 135
+EF + F N+K++ E+K ++ K K++ +K+
Sbjct: 282 KKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 26.1 bits (57), Expect = 2.5
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 134 KKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
+ ++ +K+++ EEK ++ K K+K
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAE 328
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 28.9 bits (64), Expect = 0.27
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
Y EW+ KK++ ++ K+ + +K K + K + KK +K
Sbjct: 243 YKEWISKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFE 298
>d4sbva_ b.121.4.7 (A:) Sobemovirus coat protein {SBMV (Southern
bean mosaic virus), cow pea strain [TaxId: 12139]}
Length = 199
Score = 28.4 bits (63), Expect = 0.35
Identities = 9/46 (19%), Positives = 14/46 (30%)
Query: 3 SIDYASNSDPGTGLQKDIADARCTALSYLIETIPANFPGDRLDHYT 48
+ DYA+ + + AR + A G YT
Sbjct: 141 ATDYATAVGVNANIGNILVPARLVTAMEGGSSKTAVNTGRLYASYT 186
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 28.5 bits (63), Expect = 0.38
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
Y +W+ K + K+ + +K +E + + + K + K +
Sbjct: 215 YRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDAE 269
Score = 25.8 bits (56), Expect = 2.9
Identities = 7/49 (14%), Positives = 18/49 (36%)
Query: 114 KKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ + + K + ++ + +K KE + K + K +A
Sbjct: 209 IDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDA 257
Score = 25.0 bits (54), Expect = 4.9
Identities = 9/57 (15%), Positives = 19/57 (33%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+ K K K + +K+ + + R + K E K+ + +K
Sbjct: 184 RDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPK 240
Score = 24.6 bits (53), Expect = 6.4
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKK 156
EW K+ +K K++ + + + K + + K
Sbjct: 224 FEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSLLLNNCDAEYSKY 273
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.1 bits (63), Expect = 0.43
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 19/80 (23%)
Query: 99 TQFGTSLYTEWLRNK----------KKKRKEKKKKKDKKKKKEEKK---------KEKRK 139
F L ++ +N + KE + + KE + + +K
Sbjct: 46 GFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQK 105
Query: 140 EEKKKKEEEKKKKKKKKKKK 159
E+KK+ ++KK+ + +++K
Sbjct: 106 EQKKQLTSQEKKQIRLEREK 125
Score = 27.0 bits (60), Expect = 1.1
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 115 KKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEK 149
+ +K++ K+ +EKK+ + +++K EE
Sbjct: 98 FDYFQLQKEQKKQLTSQEKKQIR---LEREKFEED 129
Score = 26.2 bits (58), Expect = 1.8
Identities = 4/28 (14%), Positives = 20/28 (71%)
Query: 124 KDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
+ +K++K++ +++K+ + ++E+ ++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 24.3 bits (53), Expect = 8.5
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 123 KKDKKKKKEEKKKEKRKEEKKKKEEEKK 150
+ K++KK+ +EK++ ++++ E+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 27.3 bits (60), Expect = 0.58
Identities = 8/37 (21%), Positives = 22/37 (59%)
Query: 109 WLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKK 145
++RN + +K + D+K+ +++ E+ +E+ +K
Sbjct: 101 FIRNLSDREIRRKLRADRKRIDQDRAAERAAKEEAQK 137
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 27.7 bits (61), Expect = 0.61
Identities = 4/41 (9%), Positives = 17/41 (41%)
Query: 112 NKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
+++ +EK + K E+ + ++ + +++
Sbjct: 217 ATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETP 257
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.8 bits (61), Expect = 0.65
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 128 KKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
K KE + K KE + + K K KK +
Sbjct: 16 KSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYV 51
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 27.3 bits (60), Expect = 0.85
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNA 162
+K D K + + E+ + E EK K + + +A
Sbjct: 1 QKDLADYPVKLKAYEDEQASIKAALAELEKHKNEDGNLTEPSA 43
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 27.0 bits (58), Expect = 1.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEE 147
+ + K+KR E+ K+ + E KRK+ K K ++
Sbjct: 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDD 40
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 26.5 bits (58), Expect = 1.4
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 106 YTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKK 160
Y +W+ KKK+ K KK ++ E ++E K+ + +
Sbjct: 224 YDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENE 278
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 218
Score = 26.2 bits (57), Expect = 1.9
Identities = 12/55 (21%), Positives = 20/55 (36%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
Y+ W K KKK + KE +K E ++ + + + KK
Sbjct: 133 TYSYWASVLNTKASFSKKKSRVQMVKELIDGQKILFENEEALYKWNNGSRVEFKK 187
Score = 24.3 bits (52), Expect = 7.9
Identities = 9/55 (16%), Positives = 17/55 (30%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+K+ E+K + K + KKK + + K +D
Sbjct: 108 HYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVKELID 162
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 25.9 bits (56), Expect = 2.1
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKKKEE 132
L+ E L K++ + + + + ++E
Sbjct: 154 LFFERLPKPKREAFLEANRAELVRFQKE 181
Score = 24.7 bits (53), Expect = 5.7
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 134 KKEKRKEEKKKKEEEKKKKKKK 155
K KR+ + E + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 25.8 bits (56), Expect = 2.8
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
T++ K+ K+ + + KK+E +K K
Sbjct: 111 TQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVK 155
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 25.3 bits (54), Expect = 4.0
Identities = 4/34 (11%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 120 KKKKKDKKKKKEEKKKE-KRKEEKKKKEEEKKKK 152
+++ ++ + E++ E + +E+ + ++K+
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 35
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 433
Score = 25.4 bits (55), Expect = 4.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 116 KRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEE 147
K + K + EE ++E RKEE+ K
Sbjct: 324 KLGDFNLIAKTKTELEETQRELRKEEEAKGIS 355
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 24.1 bits (52), Expect = 4.8
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 118 KEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+++ K + ++E++ + + KKKK+K++K
Sbjct: 45 SREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK 86
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 25.0 bits (53), Expect = 4.9
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 111 RNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKK 151
R+ + K+ + K+ K + +K +EE ++
Sbjct: 320 RSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEE 360
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 24.9 bits (53), Expect = 5.0
Identities = 9/49 (18%), Positives = 15/49 (30%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
K K K+ K +K K E E + + + K +
Sbjct: 147 SKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDP 195
Score = 24.9 bits (53), Expect = 5.6
Identities = 8/55 (14%), Positives = 15/55 (27%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNALD 164
+ K K K+ K +K K + + + + K L
Sbjct: 138 IDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLP 192
>d1ix1a_ d.167.1.1 (A:) Peptide deformylase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 169
Score = 24.8 bits (53), Expect = 5.0
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 105 LYTEWLRNKKKKRKEKKKKKDKKKK 129
L+ ++L K+ R KK +K +++
Sbjct: 142 LFVDYLSTLKRDRIRKKLEKQHRQQ 166
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 177
Score = 24.6 bits (52), Expect = 5.8
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 107 TEWLRNKKKKRKEKKKKKDKKKKKEE 132
+ W K ++ + + KEE
Sbjct: 152 SAWWTANLKNIANWREYINMLETKEE 177
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 24.6 bits (53), Expect = 7.3
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 103 TSLYTEWLRNKKKKRKEKKKKKDKKKKKEEKKK---EKRKEEKKKKEEEKKKKKKKKKKK 159
T ++T+ ++ + + + D +E+ + + + KK
Sbjct: 98 TEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKK 157
Query: 160 K 160
K
Sbjct: 158 K 158
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 24.3 bits (52), Expect = 7.5
Identities = 7/51 (13%), Positives = 25/51 (49%)
Query: 113 KKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKNAL 163
+K + + K++++ K +E+ + K+ ++E + K + + + +
Sbjct: 250 EKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 23.7 bits (51), Expect = 7.9
Identities = 6/50 (12%), Positives = 20/50 (40%)
Query: 110 LRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKK 159
+ +K+ +K ++ +++ K + + + K+ K+K
Sbjct: 48 ISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 24.2 bits (52), Expect = 8.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 120 KKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKK 152
++ + K EE +K + EK+K+E EKKK+
Sbjct: 211 RRDQSLKILNPEEIEKYVAEIEKEKEENEKKKQ 243
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 24.1 bits (52), Expect = 8.4
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 108 EWLRNKKKKRKEKKKKKDKKKKKEEKKKEKRKEEKKKKEEEKKKKKKKKKKKKN 161
E N K KEK +K + K+ + E+ +++++ ++ +K K+ K
Sbjct: 85 EENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.128 0.353
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 597,142
Number of extensions: 30415
Number of successful extensions: 1303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 856
Number of HSP's successfully gapped: 352
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.0 bits)