BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3549
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 24 CLSKLGTGAHGLRSSESDTEPLLSADHMI----ESTASEIETLLTKVG--WSLRKQARKL 77
C++K+ + L E D + ++ H++ E++ + +LT++G W +R +K
Sbjct: 50 CIAKVAS----LTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKH 105
Query: 78 ENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKL 129
EN + CL + GL+ ++ D++P + EI+TLLT L
Sbjct: 106 ENCVSTAQFCLQTILNALSGLK-NKPDSKP---DKELCTRNNREIDTLLTCL 153
>pdb|2LFW|A Chain A, Nmr Structure Of The Phyrsl-Nepr Complex From Sphingomonas
Sp. Fr1
Length = 157
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 48 ADHMIESTASEIETLLTKVGWSLRKQARKLE 78
A ++IE SE+ETL+T+ + KQ R LE
Sbjct: 115 AAYLIEVDTSEVETLVTEALAEIEKQTRALE 145
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 28.1 bits (61), Expect = 3.6, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 99 RSSESDTEPLLSADHMIESTASEIET--LLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRH 156
+ E+ + +LS A I T +LTK S + + A +D A+ + R
Sbjct: 604 KKGEATLQSILSTLPSKSQAAKAIATVYILTKFSEDERYLGNYSATAWEDKDALDAINRF 663
Query: 157 KEILEDYKKELSKTMSNI 174
++ LED K++ + N+
Sbjct: 664 QDKLEDISKKIKQRNENL 681
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 99 RSSESDTEPLLSADHMIESTASEIET--LLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRH 156
+ E+ + +LS A I T +LTK S + + A +D A+ + R
Sbjct: 601 KKGEATLQSILSTLPSKSQAAKAIATVYILTKFSEDERYLGNYSATAWEDKDALDAINRF 660
Query: 157 KEILEDYKKELSKTMSNI 174
++ LED K++ + N+
Sbjct: 661 QDKLEDISKKIKQRNENL 678
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 99 RSSESDTEPLLSADHMIESTASEIET--LLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRH 156
+ E+ + +LS A I T +LTK S + + A +D A+ + R
Sbjct: 601 KKGEATLQSILSTLPSKSQAAKAIATVYILTKFSEDERYLGNYSATAWEDKDALDAINRF 660
Query: 157 KEILEDYKKELSKTMSNI 174
++ LED K++ + N+
Sbjct: 661 QDKLEDISKKIKQRNENL 678
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 99 RSSESDTEPLLSADHMIESTASEIET--LLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRH 156
+ E+ + +LS A I T +LTK S + + A +D A+ + R
Sbjct: 971 KKGEATLQSILSTLPSKSQAAKAIATVYILTKFSEDERYLGNYSATAWEDKDALDAINRF 1030
Query: 157 KEILEDYKKELSKTMSNI 174
++ LED K++ + N+
Sbjct: 1031 QDKLEDISKKIKQRNENL 1048
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 99 RSSESDTEPLLSADHMIESTASEIET--LLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRH 156
+ E+ + +LS A I T +LTK S + + A +D A+ + R
Sbjct: 601 KKGEATLQSILSTLPSKSQAAKAIATVYILTKFSEDERYLGNYSATAWEDKDALDAINRF 660
Query: 157 KEILEDYKKELSKTMSNI 174
++ LED K++ + N+
Sbjct: 661 QDKLEDISKKIKQRNENL 678
>pdb|4IFQ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nup192,
Residues 2 To 960 [scnup192(2-960)]
Length = 970
Score = 27.7 bits (60), Expect = 4.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 158 EILEDYKKELSKTMSNIHSRKEREQLLHSVRKDIDS 193
+ L DY K++S S++H +R+Q S DIDS
Sbjct: 562 QCLSDYTKKISNFNSSLH---KRQQFSESTHNDIDS 594
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 39 ESDTEPLLSADHMIESTASEIETLLTKVGWSLRKQARKLEND 80
+ +TEPL+S D+ + +S ++ LTKV L K + +N+
Sbjct: 276 DYNTEPLVSVDYNHDPASSTVDASLTKVSGRLVKVSSWYDNE 317
>pdb|2EBF|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 27.3 bits (59), Expect = 6.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 157 KEILEDYKKELSKTMSNIHSRK---EREQLLHSVRKDIDSYKNSASGLNR 203
K I E YK+ L+K + IH+ ER+ L+H + + ID Y+ S R
Sbjct: 66 KPIGESYKRILAK-LQRIHNSNILDERQGLMHELMELIDLYEESQPSSER 114
>pdb|2EBH|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 27.3 bits (59), Expect = 6.3, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 157 KEILEDYKKELSKTMSNIHSRK---EREQLLHSVRKDIDSYKNSASGLNR 203
K I E YK+ L+K + IH+ ER+ L+H + + ID Y+ S R
Sbjct: 66 KPIGESYKRILAK-LQRIHNSNILDERQGLMHELMELIDLYEESQPSSER 114
>pdb|2EC5|A Chain A, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
pdb|2EC5|B Chain B, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 27.3 bits (59), Expect = 6.3, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 157 KEILEDYKKELSKTMSNIHSRK---EREQLLHSVRKDIDSYKNSASGLNR 203
K I E YK+ L+K + IH+ ER+ L+H + + ID Y+ S R
Sbjct: 66 KPIGESYKRILAK-LQRIHNSNILDERQGLMHELMELIDLYEESQPSSER 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.125 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,417,619
Number of Sequences: 62578
Number of extensions: 192173
Number of successful extensions: 695
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 682
Number of HSP's gapped (non-prelim): 26
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.5 bits)