Query psy3549
Match_columns 206
No_of_seqs 150 out of 216
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 19:32:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3208|consensus 100.0 2E-37 4.3E-42 265.7 14.1 138 64-204 3-141 (231)
2 KOG3208|consensus 99.5 7.8E-15 1.7E-19 126.7 4.6 64 2-67 5-68 (231)
3 PF05008 V-SNARE: Vesicle tran 93.9 1.1 2.4E-05 32.0 9.8 56 115-175 23-78 (79)
4 KOG1666|consensus 93.8 1.1 2.4E-05 39.3 11.1 75 116-190 35-111 (220)
5 PF13870 DUF4201: Domain of un 87.4 12 0.00026 30.8 11.0 62 115-179 44-105 (177)
6 PF09177 Syntaxin-6_N: Syntaxi 82.4 18 0.0004 27.0 11.2 57 115-171 37-97 (97)
7 KOG2129|consensus 78.8 48 0.001 32.3 12.3 149 6-185 162-312 (552)
8 TIGR00606 rad50 rad50. This fa 71.3 96 0.0021 33.5 13.7 84 115-198 883-967 (1311)
9 PF07303 Occludin_ELL: Occludi 65.1 60 0.0013 25.0 8.1 62 114-186 23-87 (101)
10 PF06160 EzrA: Septation ring 60.8 1.7E+02 0.0036 28.8 12.2 44 49-93 288-334 (560)
11 KOG0996|consensus 59.5 1.6E+02 0.0034 32.2 12.3 159 2-188 447-607 (1293)
12 PF08776 VASP_tetra: VASP tetr 59.2 17 0.00036 24.0 3.4 22 156-177 9-30 (40)
13 PRK04778 septation ring format 57.7 1.8E+02 0.004 28.5 11.9 104 52-171 326-431 (569)
14 PF10146 zf-C4H2: Zinc finger- 51.8 1.7E+02 0.0037 25.8 11.2 94 69-180 5-103 (230)
15 PF06008 Laminin_I: Laminin Do 51.7 1.6E+02 0.0036 25.6 13.5 124 50-177 24-154 (264)
16 KOG2129|consensus 46.2 3E+02 0.0065 27.0 11.7 65 57-137 146-214 (552)
17 PF04124 Dor1: Dor1-like famil 43.7 2.5E+02 0.0055 25.5 11.1 33 63-95 4-37 (338)
18 PF10458 Val_tRNA-synt_C: Valy 40.8 1.2E+02 0.0027 21.1 7.5 55 117-176 8-64 (66)
19 KOG0994|consensus 38.6 1.1E+02 0.0024 33.6 7.4 53 115-167 1234-1286(1758)
20 PF09403 FadA: Adhesion protei 34.6 2.4E+02 0.0053 22.6 7.6 47 48-94 25-74 (126)
21 PF15469 Sec5: Exocyst complex 33.6 2.2E+02 0.0049 23.1 7.2 78 116-193 43-135 (182)
22 PF03670 UPF0184: Uncharacteri 33.0 1.9E+02 0.0042 21.8 6.1 20 120-139 29-48 (83)
23 cd07597 BAR_SNX8 The Bin/Amphi 32.9 3.3E+02 0.0072 23.7 12.0 47 48-96 20-67 (246)
24 PF10168 Nup88: Nuclear pore c 32.0 4.8E+02 0.01 26.8 10.6 95 69-176 562-664 (717)
25 PF07739 TipAS: TipAS antibiot 31.3 92 0.002 23.1 4.2 43 122-164 30-74 (118)
26 PF09755 DUF2046: Uncharacteri 31.0 4.4E+02 0.0095 24.5 12.9 147 5-186 138-289 (310)
27 PF03993 DUF349: Domain of Unk 30.7 1.8E+02 0.0039 20.0 6.7 29 114-142 21-49 (77)
28 PF09006 Surfac_D-trimer: Lung 30.6 82 0.0018 21.3 3.3 25 69-93 3-27 (46)
29 PF00015 MCPsignal: Methyl-acc 29.8 2.9E+02 0.0064 22.1 9.1 18 48-66 74-91 (213)
30 KOG3202|consensus 29.8 4E+02 0.0087 23.7 11.2 96 66-176 6-102 (235)
31 KOG0250|consensus 29.4 7.7E+02 0.017 26.8 12.8 30 53-82 258-288 (1074)
32 KOG0996|consensus 28.8 8.3E+02 0.018 27.0 12.1 118 69-187 395-515 (1293)
33 PRK03918 chromosome segregatio 28.3 6.4E+02 0.014 25.5 13.1 34 59-92 151-185 (880)
34 TIGR03185 DNA_S_dndD DNA sulfu 27.8 6.1E+02 0.013 25.2 14.8 28 115-142 264-291 (650)
35 PF15056 NRN1: Neuritin protei 26.5 36 0.00078 26.1 1.2 12 4-15 61-72 (89)
36 TIGR00996 Mtu_fam_mce virulenc 26.1 3.9E+02 0.0084 23.2 7.9 15 53-67 133-147 (291)
37 PF00038 Filament: Intermediat 26.1 4.5E+02 0.0098 23.0 9.3 44 151-195 255-303 (312)
38 KOG1365|consensus 25.8 1.1E+02 0.0025 29.6 4.6 39 148-186 218-260 (508)
39 PF13949 ALIX_LYPXL_bnd: ALIX 24.7 4.6E+02 0.01 22.7 9.5 81 117-197 43-130 (296)
40 COG1579 Zn-ribbon protein, pos 24.5 5.1E+02 0.011 23.1 14.8 105 9-141 7-117 (239)
41 PF07851 TMPIT: TMPIT-like pro 24.3 5.9E+02 0.013 23.8 10.1 21 151-171 39-59 (330)
42 PF04156 IncA: IncA protein; 24.1 4E+02 0.0086 21.7 9.3 32 153-184 132-163 (191)
43 cd08332 CARD_CASP2 Caspase act 23.8 79 0.0017 23.6 2.6 16 154-169 3-18 (90)
44 PF06156 DUF972: Protein of un 23.1 3.6E+02 0.0079 20.9 6.5 48 115-165 10-57 (107)
45 COG3114 CcmD Heme exporter pro 22.6 1.4E+02 0.003 21.8 3.5 21 149-169 34-54 (67)
46 PF07106 TBPIP: Tat binding pr 21.8 4.3E+02 0.0094 21.3 12.1 44 41-93 64-107 (169)
47 cd08327 CARD_RAIDD Caspase act 21.7 92 0.002 23.7 2.6 16 154-169 3-18 (94)
48 cd07597 BAR_SNX8 The Bin/Amphi 21.5 5.4E+02 0.012 22.4 12.7 43 48-94 89-131 (246)
49 PF09325 Vps5: Vps5 C terminal 21.4 4.8E+02 0.01 21.6 10.6 46 48-95 22-68 (236)
50 KOG0809|consensus 21.1 6.8E+02 0.015 23.3 11.7 101 69-174 61-163 (305)
51 PF13851 GAS: Growth-arrest sp 20.7 5.3E+02 0.012 21.9 8.6 99 58-168 97-199 (201)
52 KOG3958|consensus 20.7 6.4E+02 0.014 23.7 8.3 65 115-179 245-328 (371)
53 KOG3429|consensus 20.7 5.3E+02 0.011 22.1 7.1 59 119-178 109-167 (172)
54 KOG4643|consensus 20.5 1.1E+03 0.025 25.7 14.2 35 151-187 519-553 (1195)
55 PRK10947 global DNA-binding tr 20.3 3.6E+02 0.0078 21.9 6.0 40 120-165 24-63 (135)
56 PF14942 Muted: Organelle biog 20.1 4.9E+02 0.011 21.3 8.3 54 115-169 61-114 (145)
No 1
>KOG3208|consensus
Probab=100.00 E-value=2e-37 Score=265.74 Aligned_cols=138 Identities=49% Similarity=0.758 Sum_probs=123.5
Q ss_pred cccch-hHhHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3549 64 TKVGW-SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAE 142 (206)
Q Consensus 64 ~klsw-~LRkqAR~LE~qiD~kL~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~~ 142 (206)
...+| .||||||+||+++|+||++|+++++...++. ..++.|....+..|+.++.|||.||++|++|||+|++...+
T Consensus 3 ~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~--~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~~s 80 (231)
T KOG3208|consen 3 SSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGY--DIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCASS 80 (231)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--CCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45689 9999999999999999999999999744222 24666766668889999999999999999999999994445
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhhhhcccchhhhcCCCCCcccc
Q psy3549 143 GGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVRKDIDSYKNSASGLNRR 204 (206)
Q Consensus 143 ~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR~nLL~sVr~DI~~~k~s~~g~~~r 204 (206)
++++++++|||+||||||+||++||+|+++||.+.++|++||++|+.||..|+..+ |.+++
T Consensus 81 ~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~~~-~~~~~ 141 (231)
T KOG3208|consen 81 PANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISSYPSAS-GFNRG 141 (231)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccC-CCchH
Confidence 77899999999999999999999999999999999999999999999999999988 88865
No 2
>KOG3208|consensus
Probab=99.52 E-value=7.8e-15 Score=126.65 Aligned_cols=64 Identities=50% Similarity=0.729 Sum_probs=55.0
Q ss_pred CcHHHHHHHHHHHHhhHhhhhhhhhhhccCCCCCCCCCCCCCCCCchhhhHHhHHHHHhhhhcccc
Q psy3549 2 NSWEDLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKVG 67 (206)
Q Consensus 2 ~~~~~lr~~ar~le~~~d~kl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eie~LL~kls 67 (206)
++||+||||||+|||+||+||++|+|||++..++ -..|+.|+...+++|++|+.|||.||.++.
T Consensus 5 s~we~LRkqArslE~~ld~kL~syskl~as~~gg--~~~~~s~~~~~~~s~ks~~~eie~LLeql~ 68 (231)
T KOG3208|consen 5 SSWEALRKQARSLENQLDSKLVSYSKLGASTHGG--YDIDTSPLSGSDRSFKSLENEIEGLLEQLQ 68 (231)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--CCCCcccccCcCcchhhhHHHHHHHHHHHH
Confidence 4699999999999999999999999999984433 335777876669999999999999999863
No 3
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=93.95 E-value=1.1 Score=32.04 Aligned_cols=56 Identities=21% Similarity=0.175 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIH 175 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~ 175 (206)
-..+-.+|+..|+...+++++|.--+.+.|+ + .=..+...|..|+.++.+++..++
T Consensus 23 r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~-s----~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 23 RKSLIREIERDLDEAEELLKQMELEVRSLPP-S----ERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H-H----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-H----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788889999999999999999977765422 1 124455667777777777766654
No 4
>KOG1666|consensus
Probab=93.81 E-value=1.1 Score=39.34 Aligned_cols=75 Identities=25% Similarity=0.308 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhhhhcccc
Q psy3549 116 ESTASEIETLLTKLSNTNDKMSDIMAEGGK--DAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVRKD 190 (206)
Q Consensus 116 ~~le~eIE~lL~kL~~vnd~M~~~~~~~~~--s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR~nLL~sVr~D 190 (206)
..+..+|+..|+...+++++|.-.+...|| -+++...|+-++-=|.++++||+++.+.--...+|.+++..+-.|
T Consensus 35 k~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~ad 111 (220)
T KOG1666|consen 35 KQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTTSRNLNAGDRDELLEALEAD 111 (220)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHhhhhcc
Confidence 568899999999999999999988776444 345556667777777777777777774433455777777665544
No 5
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.42 E-value=12 Score=30.83 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKE 179 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~re 179 (206)
|+.+..+...+..++++=|..|.++-. .....+|.|+.+|+.|+....++..++..|....+
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~---~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~ 105 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKK---KIGKTVQILTHVKEKLHFLSEELERLKQELKDREE 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998754 34667899999999999999999999988876544
No 6
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=82.45 E-value=18 Score=27.04 Aligned_cols=57 Identities=7% Similarity=0.201 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAA----IHTLQRHKEILEDYKKELSKTM 171 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~----~htLqRHREIL~Dy~~EF~R~r 171 (206)
+..+..+|...|+-+..-++.|.+.+...-.++.+ ...|++||..+.+.+.+...++
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 67888888888888888888888776621012333 2569999999999999887764
No 7
>KOG2129|consensus
Probab=78.77 E-value=48 Score=32.33 Aligned_cols=149 Identities=21% Similarity=0.257 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhhHhhhhhhhhhhccCCCCCCCCCCCCCCCCchhhhHHhHHHHHhhhhcccchhHhHHHHHHHHHHHHHH
Q psy3549 6 DLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKVGWSLRKQARKLENDIDVKL 85 (206)
Q Consensus 6 ~lr~~ar~le~~~d~kl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eie~LL~klsw~LRkqAR~LE~qiD~kL 85 (206)
.|=+.-|+|||+-+.|-.++-+|--. .-.+|..++-|-|-|..++ | |..-+||.+.+.+-
T Consensus 162 Klm~ki~Klen~t~~kq~~leQLRre----------------~V~lentlEQEqEalvN~L-w---KrmdkLe~ekr~Lq 221 (552)
T KOG2129|consen 162 KLMNKIRKLENKTLLKQNTLEQLRRE----------------AVQLENTLEQEQEALVNSL-W---KRMDKLEQEKRYLQ 221 (552)
T ss_pred HHHHHHHHhhhhhHHhhhhHHHHHHH----------------HHHHhhHHHHHHHHHHHHH-H---HHHHHHHHHHHHHH
Confidence 34456678888888888777777221 1245888888888877765 5 44556777777666
Q ss_pred HHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHHHHH
Q psy3549 86 TCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHT--LQRHKEILEDY 163 (206)
Q Consensus 86 ~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~ht--LqRHREIL~Dy 163 (206)
-.|-+-..... .|. .-+..|...+|+ .+-.--.+++|+.-++.+...+. ++-+.|+ ++++++-=.|+
T Consensus 222 ~KlDqpvs~p~-~pr-dia~~~~~~gD~-----a~~~~~hi~~l~~EveRlrt~l~----~Aqk~~~ek~~qy~~Ee~~~ 290 (552)
T KOG2129|consen 222 KKLDQPVSTPS-LPR-DIAKIPDVHGDE-----AAAEKLHIDKLQAEVERLRTYLS----RAQKSYQEKLMQYRAEEVDH 290 (552)
T ss_pred HHhcCcccCCC-chh-hhhcCccccCch-----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhH
Confidence 66644332211 110 001111112332 22233445667777777777665 2333333 77888888888
Q ss_pred HHHHHHHHhHHHHHhhHHHhhh
Q psy3549 164 KKELSKTMSNIHSRKEREQLLH 185 (206)
Q Consensus 164 ~~EF~R~r~ni~~~reR~nLL~ 185 (206)
+-|.-|++.-++...+|-+-|.
T Consensus 291 reen~rlQrkL~~e~erRealc 312 (552)
T KOG2129|consen 291 REENERLQRKLINELERREALC 312 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999988888886654
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.32 E-value=96 Score=33.52 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhhhhcccchhh
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAE-GGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVRKDIDS 193 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~-~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR~nLL~sVr~DI~~ 193 (206)
...++.+|+++-..+..+-..+..+-.. .|..+.+....+++.++-.....++.+.+..+.....-..=|..+..+|..
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 962 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIEN 962 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777665433 445666667778888888888888899999998888888888888899999
Q ss_pred hcCCC
Q psy3549 194 YKNSA 198 (206)
Q Consensus 194 ~k~s~ 198 (206)
|-..+
T Consensus 963 y~~~~ 967 (1311)
T TIGR00606 963 KIQDG 967 (1311)
T ss_pred HHHcC
Confidence 87655
No 9
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=65.07 E-value=60 Score=24.97 Aligned_cols=62 Identities=18% Similarity=0.305 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHhhHHHhhhh
Q psy3549 114 MIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTM---SNIHSRKEREQLLHS 186 (206)
Q Consensus 114 ~~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r---~ni~~~reR~nLL~s 186 (206)
++..|-++|+.+..++..+-..|..+.. + -+.+..|- .-.+||++++ .+++..+.|=+.|.+
T Consensus 23 EYk~L~~~v~~v~~~f~~L~~~l~~l~~----~------s~ey~~i~-~I~~eY~k~Kk~~p~y~~~K~Rc~yL~~ 87 (101)
T PF07303_consen 23 EYKELHAEVDAVSRRFQELDSELKRLPP----G------SQEYKRIA-QILQEYNKKKKRDPNYQEKKKRCEYLHN 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-T----T------SHHHHHHH----HHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC----C------CcHHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 3678888999999999999999887632 2 25666666 6667777774 788888888877744
No 10
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=60.78 E-value=1.7e+02 Score=28.81 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=20.9
Q ss_pred hhhHHhHHHHHhh--hhcccch-hHhHHHHHHHHHHHHHHHHhhhhhc
Q psy3549 49 DHMIESTASEIET--LLTKVGW-SLRKQARKLENDIDVKLTCLSKLGT 93 (206)
Q Consensus 49 ~~~~~~l~~eie~--LL~klsw-~LRkqAR~LE~qiD~kL~sySkla~ 93 (206)
++.+..|+.|++- -+.+ .| .+....-.+..+.......+..+..
T Consensus 288 d~lYd~le~E~~Ak~~V~~-~~~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 288 DQLYDILEKEVEAKKYVEK-NLKELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666542 1222 24 4444444444444444444444443
No 11
>KOG0996|consensus
Probab=59.53 E-value=1.6e+02 Score=32.20 Aligned_cols=159 Identities=18% Similarity=0.254 Sum_probs=99.8
Q ss_pred CcHHHHHHHHHHHHhhHhhhhhhhhhhccCCCCCCCCCCCCCCCCchhhhHHhHHHHHhhhhcccch-hHhHHHHHHHHH
Q psy3549 2 NSWEDLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKVGW-SLRKQARKLEND 80 (206)
Q Consensus 2 ~~~~~lr~~ar~le~~~d~kl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eie~LL~klsw-~LRkqAR~LE~q 80 (206)
+-|+.|-.+.-++|-.||.-+..|-+=..+ +.. --..++.|+..++.+ . ..|.+++-.|++
T Consensus 447 ~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~--------------~~~--e~~~~ekel~~~~~~--~n~~~~e~~vaese 508 (1293)
T KOG0996|consen 447 TEIEQLEELLEKEERELDEILDSLKQETEG--------------IRE--EIEKLEKELMPLLKQ--VNEARSELDVAESE 508 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------hHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 459999999999999999999888765332 111 246778888888775 6 999999999999
Q ss_pred HHHHHHHhhhhhcccCC-CCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3549 81 IDVKLTCLSKLGTGAHG-LRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEI 159 (206)
Q Consensus 81 iD~kL~sySkla~~~~~-~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREI 159 (206)
++-++..-......+-. .. .+............+|..+...|.+..+.+...... =+.+..+.+-.+-.
T Consensus 509 l~~L~~~~~~~~~~~e~lk~-------~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~---l~~~~~e~~~~~~~ 578 (1293)
T KOG0996|consen 509 LDILLSRHETGLKKVEELKG-------KLLASSESLKEKKTELDDLKEELPSLKQELKEKEKE---LPKLRKEERNLKSQ 578 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---HHHHHHHHHHHHHH
Confidence 99998876655332210 00 000111112223334444444555544444443221 12333444555566
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHhhhhcc
Q psy3549 160 LEDYKKELSKTMSNIHSRKEREQLLHSVR 188 (206)
Q Consensus 160 L~Dy~~EF~R~r~ni~~~reR~nLL~sVr 188 (206)
|+..++..--.+++.+..+.|.+-|-.+.
T Consensus 579 ~~~~rqrveE~ks~~~~~~s~~kVl~al~ 607 (1293)
T KOG0996|consen 579 LNKLRQRVEEAKSSLSSSRSRNKVLDALM 607 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 67777777777888888888888888776
No 12
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=59.24 E-value=17 Score=23.98 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q psy3549 156 HKEILEDYKKELSKTMSNIHSR 177 (206)
Q Consensus 156 HREIL~Dy~~EF~R~r~ni~~~ 177 (206)
-+|||.+.++|+.+.|..|-.+
T Consensus 9 KqEIL~EvrkEl~K~K~EIIeA 30 (40)
T PF08776_consen 9 KQEILEEVRKELQKVKEEIIEA 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999988776
No 13
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=57.68 E-value=1.8e+02 Score=28.45 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=46.9
Q ss_pred HHhHHHHHhhhhcccch--hHhHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHH
Q psy3549 52 IESTASEIETLLTKVGW--SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKL 129 (206)
Q Consensus 52 ~~~l~~eie~LL~klsw--~LRkqAR~LE~qiD~kL~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL 129 (206)
...+..||+.+=..-.. .-=..+++++.+++..-..|..+...+... ...|..+..+++.+.+++
T Consensus 326 ~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~-------------~~~ysel~e~leel~e~l 392 (569)
T PRK04778 326 NKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQ-------------EIAYSELQEELEEILKQL 392 (569)
T ss_pred HHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------------CCCHHHHHHHHHHHHHHH
Confidence 44555566655444221 222335555555555555555443332211 111445555666666666
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3549 130 SNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTM 171 (206)
Q Consensus 130 ~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r 171 (206)
..+......+... =..+...-...|+.|..|+..++.++
T Consensus 393 eeie~eq~ei~e~---l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 393 EEIEKEQEKLSEM---LQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554331 01222333344444444444444333
No 14
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=51.83 E-value=1.7e+02 Score=25.78 Aligned_cols=94 Identities=16% Similarity=0.219 Sum_probs=58.0
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----C
Q psy3549 69 SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAE-----G 143 (206)
Q Consensus 69 ~LRkqAR~LE~qiD~kL~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~~-----~ 143 (206)
+||.++..||.-....+.....+-. .+........|++.|++....-.+.|..+-.. .
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~-----------------ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~ 67 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLEN-----------------EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLEN 67 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777776666666654422 33345667778888887766666666554331 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhH
Q psy3549 144 GKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKER 180 (206)
Q Consensus 144 ~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR 180 (206)
.+..+. ..-.+.++...-+..||.+++..|...|.=
T Consensus 68 iIkqa~-~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 68 IIKQAE-SERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 233555566666667999999999887543
No 15
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=51.74 E-value=1.6e+02 Score=25.61 Aligned_cols=124 Identities=14% Similarity=0.201 Sum_probs=62.8
Q ss_pred hhHHhHHHHHhhhhcccchhHhHHHHHHHHHHHHHHHHhhhhhcccC---CCC-CCCCCCCCCchhhhhhHHHHHHHHHH
Q psy3549 50 HMIESTASEIETLLTKVGWSLRKQARKLENDIDVKLTCLSKLGTGAH---GLR-SSESDTEPLLSADHMIESTASEIETL 125 (206)
Q Consensus 50 ~~~~~l~~eie~LL~klsw~LRkqAR~LE~qiD~kL~sySkla~~~~---~~~-~s~s~~~~~~~~e~~~~~le~eIE~l 125 (206)
..++++..++.....+.. ..+.++-.+|.+++..-.....+..... ..+ ....++. ..-..-..+...|+.+
T Consensus 24 ~~~e~~~~~L~~~~~~~~-~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~---~t~~~a~~L~~~i~~l 99 (264)
T PF06008_consen 24 SSIEDLTNQLRSYRSKLN-PQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTE---RTLQRAQDLEQFIQNL 99 (264)
T ss_pred HHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 346666666666555322 5555566666665555555555433221 000 0000000 0011135677888888
Q ss_pred HHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHH
Q psy3549 126 LTKLSNTNDKMSDIMAE--GGKDAAAIHTLQRHKEILEDY-KKELSKTMSNIHSR 177 (206)
Q Consensus 126 L~kL~~vnd~M~~~~~~--~~~s~s~~htLqRHREIL~Dy-~~EF~R~r~ni~~~ 177 (206)
.....++++++..+-.. .+|+..+...|.-=+.+|.+- .+.|...+.....+
T Consensus 100 ~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~E 154 (264)
T PF06008_consen 100 QDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDE 154 (264)
T ss_pred HHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 88888888888877551 334555555555555555543 12344444444333
No 16
>KOG2129|consensus
Probab=46.16 E-value=3e+02 Score=27.04 Aligned_cols=65 Identities=29% Similarity=0.353 Sum_probs=43.0
Q ss_pred HHHhhhhcccc-h---hHhHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHH
Q psy3549 57 SEIETLLTKVG-W---SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNT 132 (206)
Q Consensus 57 ~eie~LL~kls-w---~LRkqAR~LE~qiD~kL~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~v 132 (206)
.++|++|..-. | .|=+..|+|||+++.|=.++.+|-.. .=++|..++.|-|-|.++|=.-
T Consensus 146 ~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre----------------~V~lentlEQEqEalvN~LwKr 209 (552)
T KOG2129|consen 146 LPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRRE----------------AVQLENTLEQEQEALVNSLWKR 209 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHH----------------HHHHhhHHHHHHHHHHHHHHHH
Confidence 34566665433 3 67788999999999999999988441 2234566777766666655555
Q ss_pred HHHHH
Q psy3549 133 NDKMS 137 (206)
Q Consensus 133 nd~M~ 137 (206)
+|+|.
T Consensus 210 mdkLe 214 (552)
T KOG2129|consen 210 MDKLE 214 (552)
T ss_pred HHHHH
Confidence 55443
No 17
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=43.72 E-value=2.5e+02 Score=25.47 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=27.1
Q ss_pred hcccch-hHhHHHHHHHHHHHHHHHHhhhhhccc
Q psy3549 63 LTKVGW-SLRKQARKLENDIDVKLTCLSKLGTGA 95 (206)
Q Consensus 63 L~klsw-~LRkqAR~LE~qiD~kL~sySkla~~~ 95 (206)
|...++ .|+++.-.|+.++.......+.++...
T Consensus 4 l~s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~ 37 (338)
T PF04124_consen 4 LTSLSLESLFSEPQSLSEEIASLDAQLQSLAFRN 37 (338)
T ss_pred cccCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 445678 899999999999999999888887753
No 18
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=40.81 E-value=1.2e+02 Score=21.06 Aligned_cols=55 Identities=20% Similarity=0.388 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy3549 117 STASEIETLLTKLSNTNDKMSD--IMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHS 176 (206)
Q Consensus 117 ~le~eIE~lL~kL~~vnd~M~~--~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~ 176 (206)
.++.+|+.+-..+..+...|+. ++..+|+ +.+...|+.|.+|..+..++...|..
T Consensus 8 rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~-----eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 8 RLEKELEKLEKEIERLEKKLSNENFVEKAPE-----EVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTHHHHS-C-----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccccccCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444432 2222333 56889999999999999999988764
No 19
>KOG0994|consensus
Probab=38.58 E-value=1.1e+02 Score=33.59 Aligned_cols=53 Identities=26% Similarity=0.276 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKEL 167 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF 167 (206)
++.+..+|..+-.+|..+-..|+.+.++.+.+.--+--||||.+.|.--.+|+
T Consensus 1234 ~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL 1286 (1758)
T KOG0994|consen 1234 TESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKEL 1286 (1758)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666665544344445566888888776554444
No 20
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=34.58 E-value=2.4e+02 Score=22.65 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=40.3
Q ss_pred hhhhHHhHHHHHhhhhccc--ch-hHhHHHHHHHHHHHHHHHHhhhhhcc
Q psy3549 48 ADHMIESTASEIETLLTKV--GW-SLRKQARKLENDIDVKLTCLSKLGTG 94 (206)
Q Consensus 48 ~~~~~~~l~~eie~LL~kl--sw-~LRkqAR~LE~qiD~kL~sySkla~~ 94 (206)
-+..++.+++|.+.|..+- .+ ..+.+|-.+|..+..+-..|..+...
T Consensus 25 v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~ 74 (126)
T PF09403_consen 25 VESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEK 74 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4566999999999999985 57 99999999999999998888887554
No 21
>PF15469 Sec5: Exocyst complex component Sec5
Probab=33.62 E-value=2.2e+02 Score=23.14 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH------------HH---HHHHHHHHHhHHHHHhhH
Q psy3549 116 ESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEIL------------ED---YKKELSKTMSNIHSRKER 180 (206)
Q Consensus 116 ~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL------------~D---y~~EF~R~r~ni~~~reR 180 (206)
..++..|+++..+-..++..|-.--+..-.--..++.|+|||.++ .| .-.+|.|.+.-+...++.
T Consensus 43 ~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~ 122 (182)
T PF15469_consen 43 EKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQ 122 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhh
Confidence 455555555555555555544432221111234456788888776 23 345788888888888766
Q ss_pred HHhhhhcccchhh
Q psy3549 181 EQLLHSVRKDIDS 193 (206)
Q Consensus 181 ~nLL~sVr~DI~~ 193 (206)
.-.+..|..|++.
T Consensus 123 ~~vf~~v~~eve~ 135 (182)
T PF15469_consen 123 VPVFQKVWSEVEK 135 (182)
T ss_pred HHHHHHHHHHHHH
Confidence 6667777666653
No 22
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=33.03 E-value=1.9e+02 Score=21.83 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3549 120 SEIETLLTKLSNTNDKMSDI 139 (206)
Q Consensus 120 ~eIE~lL~kL~~vnd~M~~~ 139 (206)
..|...|.+|..+.|.|..-
T Consensus 29 ~~ins~LD~Lns~LD~LE~r 48 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQR 48 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666666544
No 23
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.91 E-value=3.3e+02 Score=23.70 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=38.7
Q ss_pred hhhhHHhHHHHHhhhhcccch-hHhHHHHHHHHHHHHHHHHhhhhhcccC
Q psy3549 48 ADHMIESTASEIETLLTKVGW-SLRKQARKLENDIDVKLTCLSKLGTGAH 96 (206)
Q Consensus 48 ~~~~~~~l~~eie~LL~klsw-~LRkqAR~LE~qiD~kL~sySkla~~~~ 96 (206)
....|.....-|..++. +| .|+..|-.++.-...-=..+..|+..++
T Consensus 20 ~~~~~~~~r~~I~~l~~--~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~ 67 (246)
T cd07597 20 FQEQWANSRERIRRLLE--SWTKLRVLAERYEKRSQQQAADRAEFARLLN 67 (246)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45669999999999988 59 9999999999888887777777777543
No 24
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.96 E-value=4.8e+02 Score=26.76 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=55.5
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---c--C
Q psy3549 69 SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMA---E--G 143 (206)
Q Consensus 69 ~LRkqAR~LE~qiD~kL~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~---~--~ 143 (206)
.+-+.+..|..+.+..+....++..... .-.+.-+.+...++++.++=+.+..++.++.. . +
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~-------------~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P 628 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERK-------------SLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLP 628 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 7888888899999988888888766432 11122345666677777666666665555544 1 3
Q ss_pred CCCHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy3549 144 GKDAA---AIHTLQRHKEILEDYKKELSKTMSNIHS 176 (206)
Q Consensus 144 ~~s~s---~~htLqRHREIL~Dy~~EF~R~r~ni~~ 176 (206)
.+|.+ +..-|++-++-|.+++.-...++..++.
T Consensus 629 ~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 629 VLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 2244555555555555444444444433
No 25
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=31.34 E-value=92 Score=23.07 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHH
Q psy3549 122 IETLLTKLSNTNDKMSDIMAE--GGKDAAAIHTLQRHKEILEDYK 164 (206)
Q Consensus 122 IE~lL~kL~~vnd~M~~~~~~--~~~s~s~~htLqRHREIL~Dy~ 164 (206)
.+++-.+..++...|..+... +|.|+.++..+.||++.+..+.
T Consensus 30 ~~~~~~~~~~l~~~l~~~~~~g~~p~s~evq~l~~~~~~~~~~~~ 74 (118)
T PF07739_consen 30 WQELQKEWDELFAELAALMEEGVDPDSPEVQELAERWMELINQFT 74 (118)
T ss_dssp ---TTHHHHHHHHHHHHHHHHT--TT-HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 333334455555566665554 5678889999999999998443
No 26
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=30.99 E-value=4.4e+02 Score=24.51 Aligned_cols=147 Identities=18% Similarity=0.307 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhhHhhhhhhhhhhccCCCCCCCCCCCCCCCCchhhhHHhHHHHHhhhhcccch----hHhHHHHHHHHH
Q psy3549 5 EDLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKVGW----SLRKQARKLEND 80 (206)
Q Consensus 5 ~~lr~~ar~le~~~d~kl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eie~LL~klsw----~LRkqAR~LE~q 80 (206)
+.|++++..||.+...|=+.+.+|..- ..+ .-+.|+.|=|-|+.++ | .|-..=|.|+..
T Consensus 138 ~kL~k~i~~Le~e~~~~q~~le~Lr~E---------------KVd-lEn~LE~EQE~lvN~L-~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 138 NKLQKKIERLEKEKSAKQEELERLRRE---------------KVD-LENTLEQEQEALVNRL-WKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH---------------HHh-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 578999999999988887888888542 123 3789999999999987 5 667777788877
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCCCCCC-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy3549 81 IDVKLTCLSKLGTGAHGLRSSESDTEPL-LSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEI 159 (206)
Q Consensus 81 iD~kL~sySkla~~~~~~~~s~s~~~~~-~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREI 159 (206)
|+...+... .| .++++. ...+. -..+.+.|..|=+....+..+|...- ....-..+.|...
T Consensus 201 l~~~~s~~~--------s~---~d~~~~~~~~Dt-~e~~~shI~~Lr~EV~RLR~qL~~sq------~e~~~k~~~~~~e 262 (310)
T PF09755_consen 201 LEQPVSAPP--------SP---RDTVNVSEENDT-AERLSSHIRSLRQEVSRLRQQLAASQ------QEHSEKMAQYLQE 262 (310)
T ss_pred HccccCCCC--------Cc---chHHhhcccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 665322111 11 111100 00010 12445555555444444444444221 1111223444555
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHhhhh
Q psy3549 160 LEDYKKELSKTMSNIHSRKEREQLLHS 186 (206)
Q Consensus 160 L~Dy~~EF~R~r~ni~~~reR~nLL~s 186 (206)
....+.|=.|++-.++...+|-+=|+-
T Consensus 263 ek~ireEN~rLqr~L~~E~erreal~R 289 (310)
T PF09755_consen 263 EKEIREENRRLQRKLQREVERREALCR 289 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888888888888888887754
No 27
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=30.67 E-value=1.8e+02 Score=19.99 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3549 114 MIESTASEIETLLTKLSNTNDKMSDIMAE 142 (206)
Q Consensus 114 ~~~~le~eIE~lL~kL~~vnd~M~~~~~~ 142 (206)
.|..+..+.+.-|.+-..+|++|..++.+
T Consensus 21 ~~~~~~~~~~~n~~~K~~Li~~~~~l~~~ 49 (77)
T PF03993_consen 21 FFEEQDAEREENLEKKEALIEEAEALAES 49 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36788889999999999999999998764
No 28
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=30.64 E-value=82 Score=21.35 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.0
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhhhc
Q psy3549 69 SLRKQARKLENDIDVKLTCLSKLGT 93 (206)
Q Consensus 69 ~LRkqAR~LE~qiD~kL~sySkla~ 93 (206)
.||+|.-.||.++..+-.+|+++-.
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998743
No 29
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=29.82 E-value=2.9e+02 Score=22.12 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.0
Q ss_pred hhhhHHhHHHHHhhhhccc
Q psy3549 48 ADHMIESTASEIETLLTKV 66 (206)
Q Consensus 48 ~~~~~~~l~~eie~LL~kl 66 (206)
|.. |..++.||..|-.+.
T Consensus 74 G~g-F~vvA~eir~LA~~t 91 (213)
T PF00015_consen 74 GRG-FAVVADEIRKLAEQT 91 (213)
T ss_dssp HHH-HHHHHHHHHHHHHHH
T ss_pred chh-HHHHHHHHHHhhhhh
Confidence 444 999999999998875
No 30
>KOG3202|consensus
Probab=29.77 E-value=4e+02 Score=23.66 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=66.0
Q ss_pred cch-hHhHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3549 66 VGW-SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGG 144 (206)
Q Consensus 66 lsw-~LRkqAR~LE~qiD~kL~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~~~~ 144 (206)
-.| .....+.++.+++..++..|+.+...+++ ..++.-..+...|+..+.++...+.-|.+......
T Consensus 6 Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~~~~------------~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ 73 (235)
T KOG3202|consen 6 DPFFRVKNETLKLSEEIQGLYQRRSELLKDTGS------------DAEELTSVLRRSIEEDLEDLDELISILERNPSKFG 73 (235)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------------hhHHHHHHHHHHhHHHHHHHHHHHHHHHhCccccc
Confidence 479 99999999999999999999999775220 11221234457899999999999988887644221
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy3549 145 KDAAAIHTLQRHKEILEDYKKELSKTMSNIHS 176 (206)
Q Consensus 145 ~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~ 176 (206)
+.. --++|-|-....-+...+.++..+..
T Consensus 74 ide---~El~~R~~~i~~lr~q~~~~~~~~~~ 102 (235)
T KOG3202|consen 74 IDE---FELSRRRRFIDNLRTQLRQMKSKMAM 102 (235)
T ss_pred CcH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 211 23566666666666666666666655
No 31
>KOG0250|consensus
Probab=29.39 E-value=7.7e+02 Score=26.83 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=19.8
Q ss_pred HhHHHHHhhhhcccch-hHhHHHHHHHHHHH
Q psy3549 53 ESTASEIETLLTKVGW-SLRKQARKLENDID 82 (206)
Q Consensus 53 ~~l~~eie~LL~klsw-~LRkqAR~LE~qiD 82 (206)
++|..=+++|..+..| .+=---|+|.++++
T Consensus 258 e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~ 288 (1074)
T KOG0250|consen 258 EDLKENLEQLKAKMAWAWVNEVERQLNNQEE 288 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555567777888888 66666666666554
No 32
>KOG0996|consensus
Probab=28.80 E-value=8.3e+02 Score=27.04 Aligned_cols=118 Identities=18% Similarity=0.231 Sum_probs=72.3
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhhhcccCC--CCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Q psy3549 69 SLRKQARKLENDIDVKLTCLSKLGTGAHG--LRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAE-GGK 145 (206)
Q Consensus 69 ~LRkqAR~LE~qiD~kL~sySkla~~~~~--~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~~-~~~ 145 (206)
++-++-.+.|.++...+..-.|+-..+-. ..-+.-...| ...+.....+..+|++|...+...+..+.+...+ ..-
T Consensus 395 ~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~p-e~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~ 473 (1293)
T KOG0996|consen 395 DLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAP-EKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQE 473 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCc-hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444555555566666666665333210 0000000111 1233335678888999888888888888877663 112
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhhhhc
Q psy3549 146 DAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSV 187 (206)
Q Consensus 146 s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR~nLL~sV 187 (206)
+.....-...|++-|......+.+.++.++-+...-.+|-+-
T Consensus 474 t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~ 515 (1293)
T KOG0996|consen 474 TEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSR 515 (1293)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677888888888888888888888888887777553
No 33
>PRK03918 chromosome segregation protein; Provisional
Probab=28.30 E-value=6.4e+02 Score=25.51 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=21.0
Q ss_pred Hhhhhcccch-hHhHHHHHHHHHHHHHHHHhhhhh
Q psy3549 59 IETLLTKVGW-SLRKQARKLENDIDVKLTCLSKLG 92 (206)
Q Consensus 59 ie~LL~klsw-~LRkqAR~LE~qiD~kL~sySkla 92 (206)
|+.++.-..+ .+...++.....++.++..+...-
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 151 VRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFI 185 (880)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556665566 666666666666666666655543
No 34
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.82 E-value=6.1e+02 Score=25.16 Aligned_cols=28 Identities=7% Similarity=0.214 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAE 142 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~ 142 (206)
.+.++.+|+.+-.++..+...+..+++.
T Consensus 264 r~~Le~ei~~le~e~~e~~~~l~~l~~~ 291 (650)
T TIGR03185 264 REQLERQLKEIEAARKANRAQLRELAAD 291 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999999875
No 35
>PF15056 NRN1: Neuritin protein family
Probab=26.54 E-value=36 Score=26.09 Aligned_cols=12 Identities=50% Similarity=1.212 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q psy3549 4 WEDLRKQARKLE 15 (206)
Q Consensus 4 ~~~lr~~ar~le 15 (206)
||.||+++|++-
T Consensus 61 WEsLrqESrk~~ 72 (89)
T PF15056_consen 61 WESLRQESRKMQ 72 (89)
T ss_pred HHHHHHHHHcCC
Confidence 999999999863
No 36
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=26.13 E-value=3.9e+02 Score=23.23 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=6.4
Q ss_pred HhHHHHHhhhhcccc
Q psy3549 53 ESTASEIETLLTKVG 67 (206)
Q Consensus 53 ~~l~~eie~LL~kls 67 (206)
..+-.-+..++.+..
T Consensus 133 ~~ll~~~~~ll~~~~ 147 (291)
T TIGR00996 133 DDLLGSLTRLLNGLD 147 (291)
T ss_pred HHHHHHHHHHHhcCC
Confidence 334334444454433
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=26.06 E-value=4.5e+02 Score=23.03 Aligned_cols=44 Identities=18% Similarity=0.398 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH-HhhHHHhhhhcc----cchhhhc
Q psy3549 151 HTLQRHKEILEDYKKELSKTMSNIHS-RKEREQLLHSVR----KDIDSYK 195 (206)
Q Consensus 151 htLqRHREIL~Dy~~EF~R~r~ni~~-~reR~nLL~sVr----~DI~~~k 195 (206)
..++-|...+.+...+...++..+.. .++..+||. |+ -+|..|+
T Consensus 255 ~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~-~K~~Ld~EIatYR 303 (312)
T PF00038_consen 255 EEREEYQAEIAELEEELAELREEMARQLREYQELLD-VKLALDAEIATYR 303 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHH
Confidence 44677888888899999999988854 456666664 33 6777776
No 38
>KOG1365|consensus
Probab=25.82 E-value=1.1e+02 Score=29.56 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHhhHHH---hhhh
Q psy3549 148 AAIHTLQRHKEILE-DYKKELSKTMSNIHSRKEREQ---LLHS 186 (206)
Q Consensus 148 s~~htLqRHREIL~-Dy~~EF~R~r~ni~~~reR~n---LL~s 186 (206)
-....|++||+.+- .|--=||-+++.+++..+|.. |++.
T Consensus 218 ~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~ 260 (508)
T KOG1365|consen 218 DAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPG 260 (508)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCC
Confidence 34577999999985 588889999999999999999 7764
No 39
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=24.72 E-value=4.6e+02 Score=22.68 Aligned_cols=81 Identities=23% Similarity=0.263 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-C--CC----CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhhhhccc
Q psy3549 117 STASEIETLLTKLSNTNDKMSDIMAE-G--GK----DAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVRK 189 (206)
Q Consensus 117 ~le~eIE~lL~kL~~vnd~M~~~~~~-~--~~----s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR~nLL~sVr~ 189 (206)
..-.+|+.+|+.-..-.+.|..--.. + +| +......|++|+..|..=..-...++.-+.....--.+|.+...
T Consensus 43 ~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~ 122 (296)
T PF13949_consen 43 SILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIE 122 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChh
Confidence 44556667776666666666654331 2 22 35666889999999999999999999999999999999988877
Q ss_pred chhhhcCC
Q psy3549 190 DIDSYKNS 197 (206)
Q Consensus 190 DI~~~k~s 197 (206)
++.++-.+
T Consensus 123 ~L~~~lp~ 130 (296)
T PF13949_consen 123 ELEASLPS 130 (296)
T ss_dssp HHHHHS--
T ss_pred hHHhhCCC
Confidence 77766543
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.54 E-value=5.1e+02 Score=23.11 Aligned_cols=105 Identities=14% Similarity=0.230 Sum_probs=67.1
Q ss_pred HHHHHHHhhHhhhhhhhhhhccCCCCCCCCCCCCCCCCchhhhHHhHHHHHhhhhccc-----ch-hHhHHHHHHHHHHH
Q psy3549 9 KQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKV-----GW-SLRKQARKLENDID 82 (206)
Q Consensus 9 ~~ar~le~~~d~kl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eie~LL~kl-----sw-~LRkqAR~LE~qiD 82 (206)
++...|. .||.++..+...... .......+.+|++.+-... .. ++.+|.+++|.+|.
T Consensus 7 ~~L~~iq-~lD~e~~rl~~~~~~----------------~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~ 69 (239)
T COG1579 7 KSLLAIQ-KLDLEKDRLEPRIKE----------------IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQ 69 (239)
T ss_pred HHHHHHH-HHHHHHHHHHHhhhh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666 788888777655331 2233666777777665442 45 78888888888776
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3549 83 VKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMA 141 (206)
Q Consensus 83 ~kL~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~ 141 (206)
.-=..-.+.-...+ .. ..+.+|..+..+|+.+=.+...+.+.|.++.+
T Consensus 70 ~~r~r~~~~e~kl~-~v----------~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~ 117 (239)
T COG1579 70 EIRERIKRAEEKLS-AV----------KDERELRALNIEIQIAKERINSLEDELAELME 117 (239)
T ss_pred HHHHHHHHHHHHHh-cc----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53333332222111 00 34455899999999999999888888888766
No 41
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.28 E-value=5.9e+02 Score=23.80 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3549 151 HTLQRHKEILEDYKKELSKTM 171 (206)
Q Consensus 151 htLqRHREIL~Dy~~EF~R~r 171 (206)
..+.+|+.-|.+.....++.+
T Consensus 39 ssI~~QkkrLk~L~~sLk~~~ 59 (330)
T PF07851_consen 39 SSISHQKKRLKELKKSLKRCK 59 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 346666666777777777774
No 42
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.11 E-value=4e+02 Score=21.70 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhh
Q psy3549 153 LQRHKEILEDYKKELSKTMSNIHSRKEREQLL 184 (206)
Q Consensus 153 LqRHREIL~Dy~~EF~R~r~ni~~~reR~nLL 184 (206)
++..++...++.++|+.+...+++.+++..-+
T Consensus 132 l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 163 (191)
T PF04156_consen 132 LDSLDESIKELEKEIRELQKELQDSREEVQEL 163 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555554444444444444
No 43
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=23.77 E-value=79 Score=23.57 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3549 154 QRHKEILEDYKKELSK 169 (206)
Q Consensus 154 qRHREIL~Dy~~EF~R 169 (206)
++||++|..++.++-+
T Consensus 3 ~~hR~~L~~~r~~Lv~ 18 (90)
T cd08332 3 KRHREALKKNRVKLAK 18 (90)
T ss_pred HHHHHHHHHhHHHHHH
Confidence 6899999998888765
No 44
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.13 E-value=3.6e+02 Score=20.93 Aligned_cols=48 Identities=17% Similarity=0.358 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKK 165 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~ 165 (206)
+..++.+|..+++++..+-..|..++.. ++.+.---+.-|+.|.+..+
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EE---N~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEE---NARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 6788899999999999999999988873 34443334455555555544
No 45
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=22.60 E-value=1.4e+02 Score=21.77 Aligned_cols=21 Identities=14% Similarity=0.457 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3549 149 AIHTLQRHKEILEDYKKELSK 169 (206)
Q Consensus 149 ~~htLqRHREIL~Dy~~EF~R 169 (206)
..|++-+||-||++-.++..|
T Consensus 34 ~v~sv~qrr~iL~~v~r~~aR 54 (67)
T COG3114 34 VVHSVLQRRAILRGVARQRAR 54 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 349999999999998888765
No 46
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.80 E-value=4.3e+02 Score=21.33 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=23.8
Q ss_pred CCCCCCchhhhHHhHHHHHhhhhcccchhHhHHHHHHHHHHHHHHHHhhhhhc
Q psy3549 41 DTEPLLSADHMIESTASEIETLLTKVGWSLRKQARKLENDIDVKLTCLSKLGT 93 (206)
Q Consensus 41 ~~~~~~~~~~~~~~l~~eie~LL~klsw~LRkqAR~LE~qiD~kL~sySkla~ 93 (206)
+..+.++.+. ...|..||.+| +.+...|+.++-.+-+.+..+.+
T Consensus 64 ~~~~~~s~ee-l~~ld~ei~~L--------~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 64 DELEVPSPEE-LAELDAEIKEL--------REELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred cccCCCCchh-HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444555 66677666654 44555555555555555555544
No 47
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=21.67 E-value=92 Score=23.68 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3549 154 QRHKEILEDYKKELSK 169 (206)
Q Consensus 154 qRHREIL~Dy~~EF~R 169 (206)
++||+||..|+.++-+
T Consensus 3 e~hr~~Lr~~R~~Lv~ 18 (94)
T cd08327 3 PKHKQLLRSQRLELSA 18 (94)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999999988876
No 48
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.54 E-value=5.4e+02 Score=22.36 Aligned_cols=43 Identities=19% Similarity=0.119 Sum_probs=32.4
Q ss_pred hhhhHHhHHHHHhhhhcccchhHhHHHHHHHHHHHHHHHHhhhhhcc
Q psy3549 48 ADHMIESTASEIETLLTKVGWSLRKQARKLENDIDVKLTCLSKLGTG 94 (206)
Q Consensus 48 ~~~~~~~l~~eie~LL~klsw~LRkqAR~LE~qiD~kL~sySkla~~ 94 (206)
....|..++...+.+-+. +-.+|+..+..+-.+|-.|-.+...
T Consensus 89 l~~~l~~~s~~~~~~s~~----~~~~a~~~~~~vlE~Lk~~~d~l~S 131 (246)
T cd07597 89 INEGLSSLSKHFQLLSDL----SEDEARAEEDGVLEKLKLQLDLLVS 131 (246)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456677877776665554 4589999999999999888887554
No 49
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=21.41 E-value=4.8e+02 Score=21.64 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=31.3
Q ss_pred hhhhHHhHHHHHhhhhcccch-hHhHHHHHHHHHHHHHHHHhhhhhccc
Q psy3549 48 ADHMIESTASEIETLLTKVGW-SLRKQARKLENDIDVKLTCLSKLGTGA 95 (206)
Q Consensus 48 ~~~~~~~l~~eie~LL~klsw-~LRkqAR~LE~qiD~kL~sySkla~~~ 95 (206)
.|.-|..+...|+.|=.. . .|.+.+..+=+.-...-..|..|+..+
T Consensus 22 ~D~~F~~~~~~~~~le~~--Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~ 68 (236)
T PF09325_consen 22 PDEWFEEIKDYVDKLEEQ--LKKLYKSLERLVKRRQELASALAEFGSSF 68 (236)
T ss_pred CCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888888777443 4 666666666666666666777776654
No 50
>KOG0809|consensus
Probab=21.08 E-value=6.8e+02 Score=23.28 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=58.1
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy3549 69 SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAA 148 (206)
Q Consensus 69 ~LRkqAR~LE~qiD~kL~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s 148 (206)
+.=.++...=..+-.|+..+.+...++. .|+ .+|.. ..+...+.+..+|-++|.+-+.++..+....+.++++-.
T Consensus 61 d~~~ev~~~l~rvrrk~~eLgk~~~Khl-~Ps-F~Dk~---ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~ 135 (305)
T KOG0809|consen 61 DVAEEVDYYLSRVRRKIDELGKAHAKHL-RPS-FSDKR---EDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSER 135 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-CCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHH
Confidence 3333333333344556666666655543 331 22322 345557888888888888877777666544332333333
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHhHH
Q psy3549 149 AI--HTLQRHKEILEDYKKELSKTMSNI 174 (206)
Q Consensus 149 ~~--htLqRHREIL~Dy~~EF~R~r~ni 174 (206)
.+ ....-.-.-|+.-..+||..+++.
T Consensus 136 ~~~~n~~~~la~~LQ~~s~~fR~~Qs~Y 163 (305)
T KOG0809|consen 136 LLRKNAQGYLALQLQTLSREFRGLQSKY 163 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 222334456788888999988774
No 51
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.74 E-value=5.3e+02 Score=21.93 Aligned_cols=99 Identities=15% Similarity=0.267 Sum_probs=64.2
Q ss_pred HHhhhhcccch---hHhHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy3549 58 EIETLLTKVGW---SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTND 134 (206)
Q Consensus 58 eie~LL~klsw---~LRkqAR~LE~qiD~kL~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd 134 (206)
+++.-|..+.| .|..+..++|.+-|.....|...-..+.... .-. ---++..|..+-..++.-..
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~----------~~k--n~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKT----------GLK--NLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH--HHHHHHHHHHHHHHHHHHHH
Confidence 45555666778 8888899999999999888886544322110 011 13466677777777777778
Q ss_pred HHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHH
Q psy3549 135 KMSDIMAEGGKDA-AAIHTLQRHKEILEDYKKELS 168 (206)
Q Consensus 135 ~M~~~~~~~~~s~-s~~htLqRHREIL~Dy~~EF~ 168 (206)
+|..++...++-| ++...-.+-.++|..+-..+.
T Consensus 165 qL~evl~~~nldp~~~~~v~~~l~~~l~~KN~~I~ 199 (201)
T PF13851_consen 165 QLNEVLAAANLDPAALSQVSKKLEDVLDSKNQTIK 199 (201)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888777544433 444555667778777666554
No 52
>KOG3958|consensus
Probab=20.71 E-value=6.4e+02 Score=23.74 Aligned_cols=65 Identities=8% Similarity=0.289 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH----------------HHHHHHhc-CCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhHHH
Q psy3549 115 IESTASEIETLLTKLSNTND----------------KMSDIMAE-GGKDAAAIHTLQRHKEI--LEDYKKELSKTMSNIH 175 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd----------------~M~~~~~~-~~~s~s~~htLqRHREI--L~Dy~~EF~R~r~ni~ 175 (206)
.+.+++.+..+|.|+..|-+ ++-+++.- .|.-.++-|.++|-.-| |++|...|-.+-+.|.
T Consensus 245 ld~vEqRL~s~lgK~~~IaEk~~~s~~Da~~d~KV~elye~~qrw~pi~stLP~~V~rl~al~~LHeqa~~Fa~~lthl~ 324 (371)
T KOG3958|consen 245 LDQVEQRLQSVLGKVNEIAEKHKASVEDADTDSKVHELYETIQRWSPIASTLPELVQRLVALKQLHEQAMQFAQLLTHLD 324 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777766655542 12222221 12344455777887654 8889999999988887
Q ss_pred HHhh
Q psy3549 176 SRKE 179 (206)
Q Consensus 176 ~~re 179 (206)
..++
T Consensus 325 t~q~ 328 (371)
T KOG3958|consen 325 TTQQ 328 (371)
T ss_pred HHHH
Confidence 7654
No 53
>KOG3429|consensus
Probab=20.70 E-value=5.3e+02 Score=22.05 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy3549 119 ASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRK 178 (206)
Q Consensus 119 e~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~r 178 (206)
..-|.+.|+||.++|.+-+..... +++.-....+..-.++...++---+|.++..+..|
T Consensus 109 ~~NiaDcleKlr~~I~~~~~~~~~-~~teE~~kk~r~~~e~an~eRL~~Kk~~s~kK~~R 167 (172)
T KOG3429|consen 109 HKNIADCLEKLRDIIRAAEQTPPV-DPTEETIKKIRIRKEKANRERLQEKKVHSDKKTSR 167 (172)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Confidence 345899999999999987765432 34553334444444555555555566665555443
No 54
>KOG4643|consensus
Probab=20.45 E-value=1.1e+03 Score=25.70 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhhhhc
Q psy3549 151 HTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSV 187 (206)
Q Consensus 151 htLqRHREIL~Dy~~EF~R~r~ni~~~reR~nLL~sV 187 (206)
.++.+|=+.+..+..++.+...++. ++++.||+-|
T Consensus 519 kt~~~qye~~~~k~eeLe~~l~~lE--~ENa~LlkqI 553 (1195)
T KOG4643|consen 519 KTCDIQYELLSNKLEELEELLGNLE--EENAHLLKQI 553 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHH
Confidence 5677888888888888888887765 4556676554
No 55
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=20.32 E-value=3.6e+02 Score=21.89 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy3549 120 SEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKK 165 (206)
Q Consensus 120 ~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~ 165 (206)
.+++++++||+.|++.-.+. -.......+-+.+.|.+|+.
T Consensus 24 e~Lee~~ekl~~vv~er~ee------~~~~~~~~~er~~kl~~~r~ 63 (135)
T PRK10947 24 ETLEEMLEKLEVVVNERREE------ESAAAAEVEERTRKLQQYRE 63 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
No 56
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=20.12 E-value=4.9e+02 Score=21.29 Aligned_cols=54 Identities=24% Similarity=0.280 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSK 169 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R 169 (206)
...+...|..++++|++.+..+.++.... .....-..|+.-++-...+|.+|-+
T Consensus 61 ~~~~~~~L~~l~~~l~~a~~~~~~l~~~e-~~~~~~~~l~~~~~~~~~~we~f~~ 114 (145)
T PF14942_consen 61 IELMQQNLEQLLERLQAANSMCSRLQQKE-QEKQKDDYLQANREQRKQEWEEFMK 114 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45777889999999999999999987720 0011123344444444445554443
Done!