Query psy3549
Match_columns 206
No_of_seqs 150 out of 216
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 19:32:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vcs_A Vesicle transport throu 95.0 0.41 1.4E-05 35.7 11.0 55 116-170 37-93 (102)
2 2qyw_A Vesicle transport throu 90.4 3.1 0.00011 30.9 9.9 54 116-174 48-101 (102)
3 4dnd_A Syntaxin-10, SYN10; str 88.9 5.2 0.00018 31.0 10.5 94 69-174 31-128 (130)
4 3onj_A T-snare VTI1; helix, HA 88.9 5.4 0.00019 29.2 10.2 59 115-177 32-92 (97)
5 1use_A VAsp, vasodilator-stimu 74.3 4.3 0.00015 26.5 3.9 24 156-179 13-36 (45)
6 1n7s_D SNAP-25A; neuronal snar 70.3 21 0.00073 23.8 8.4 60 117-182 3-62 (66)
7 4ioe_A Secreted protein ESXB; 69.1 13 0.00046 25.4 6.1 62 115-177 21-89 (93)
8 1xaw_A Occludin; coiled-coil, 68.4 23 0.0008 28.0 7.9 60 114-184 60-121 (140)
9 1sfc_D Protein (SNAP-25B), pro 66.6 32 0.0011 24.4 8.9 63 116-184 21-83 (87)
10 3gwk_C SAG1039, putative uncha 63.3 34 0.0012 23.6 9.2 64 115-179 20-90 (98)
11 3ghg_A Fibrinogen alpha chain; 57.8 40 0.0014 32.2 8.6 25 69-93 142-166 (562)
12 3tnu_A Keratin, type I cytoske 54.7 67 0.0023 24.3 9.3 78 112-195 44-125 (131)
13 3tnu_B Keratin, type II cytosk 47.4 88 0.003 23.5 9.3 75 115-195 45-123 (129)
14 3ljm_A Coil Ser L9C; de novo d 45.3 17 0.0006 21.3 2.6 16 3-18 2-17 (31)
15 2p22_A Suppressor protein STP2 44.1 75 0.0026 25.8 7.2 55 124-178 12-72 (174)
16 2avr_X Adhesion A; antiparalle 41.4 1E+02 0.0036 23.6 7.2 87 47-141 6-99 (119)
17 1x8y_A Lamin A/C; structural p 40.2 73 0.0025 22.6 5.9 44 151-195 28-76 (86)
18 3zbh_A ESXA; unknown function, 40.0 85 0.0029 21.2 9.6 63 115-178 21-90 (99)
19 2c5k_T Syntaxin TLG1, T-snare 36.2 92 0.0031 22.6 6.0 80 115-195 8-88 (95)
20 3na7_A HP0958; flagellar bioge 34.9 1.9E+02 0.0066 23.9 10.9 62 69-141 57-118 (256)
21 1l4a_D S-SNAP25 fusion protein 33.6 1.3E+02 0.0043 21.3 7.5 61 116-182 22-82 (87)
22 1ny9_A Transcriptional activat 28.4 1.1E+02 0.0037 22.9 5.5 41 115-162 50-92 (143)
23 1gl2_D Syntaxin 8, vesicle tra 27.8 1.3E+02 0.0045 19.7 6.9 57 121-183 6-62 (65)
24 3cvf_A Homer-3, homer protein 25.7 1.8E+02 0.0062 20.6 7.2 18 69-86 24-41 (79)
25 3tnu_A Keratin, type I cytoske 25.6 2.1E+02 0.0073 21.4 8.7 23 69-91 42-64 (131)
26 3ghg_A Fibrinogen alpha chain; 22.8 5E+02 0.017 24.7 10.4 27 58-84 50-76 (562)
27 3viq_B Mating-type switching p 22.5 2.2E+02 0.0076 20.5 6.1 67 116-188 4-71 (85)
28 2r2v_A GCN4 leucine zipper; co 22.1 1.3E+02 0.0046 18.2 3.9 24 116-139 4-27 (34)
29 1lyp_A CAP18; lipopolysacchari 21.3 68 0.0023 18.9 2.3 19 7-25 2-20 (32)
30 2nps_D Syntaxin-6; vesicle fus 21.0 2.1E+02 0.0072 19.7 6.2 59 121-185 16-74 (82)
31 1gk4_A Vimentin; intermediate 21.0 2.2E+02 0.0074 19.8 8.3 69 121-195 2-74 (84)
32 1uo4_A General control protein 20.6 1.5E+02 0.0052 18.0 3.9 24 116-139 4-27 (34)
33 2xv5_A Lamin-A/C; structural p 20.6 2.2E+02 0.0075 19.7 5.4 45 151-195 5-53 (74)
No 1
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=94.97 E-value=0.41 Score=35.67 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3549 116 ESTASEIETLLTKLSNTNDKMSDIMAEGGKD--AAAIHTLQRHKEILEDYKKELSKT 170 (206)
Q Consensus 116 ~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s--~s~~htLqRHREIL~Dy~~EF~R~ 170 (206)
.....+|+..|+.-.+++++|.--+.+.|++ +.+...|.-||-=|..++++|+++
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999777664432 334444444444444444444443
No 2
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=90.42 E-value=3.1 Score=30.85 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy3549 116 ESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNI 174 (206)
Q Consensus 116 ~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni 174 (206)
...-.+|+..|+.-.+++++|.--+.+.| ++... .....|.+|++++.+++..+
T Consensus 48 k~~i~~ie~~ldEA~eLl~qMelE~r~~p-~s~R~----~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 48 KKLVRDFDEKQQEANETLAEMEEELRYAP-LTFRN----PMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSC-HHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHH----HHHHHHHHHHHHHHHHHhhc
Confidence 67788999999999999999997766543 22222 34456778888888877654
No 3
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=88.93 E-value=5.2 Score=31.05 Aligned_cols=94 Identities=12% Similarity=0.145 Sum_probs=56.1
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy3549 69 SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAA 148 (206)
Q Consensus 69 ~LRkqAR~LE~qiD~kL~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s 148 (206)
.++.++..-=+.++..+.+|..+....+ .+ +.++ |..+..||+..|.-+..-++.|.+.+.-.-..++
T Consensus 31 ~Vk~EVq~sl~~l~~l~~~w~~l~~~~~-~~----------s~~E-~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~ 98 (130)
T 4dnd_A 31 VVRGEVQKAVNTARGLYQRWCELLQESA-AV----------GREE-LDWTTNELRNGLRSIEWDLEDLEETIGIVEANPG 98 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--------------------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC-Cc----------chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 4444443333345666777776644321 00 1222 6777888888887777777777776551001122
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHhHH
Q psy3549 149 A----IHTLQRHKEILEDYKKELSKTMSNI 174 (206)
Q Consensus 149 ~----~htLqRHREIL~Dy~~EF~R~r~ni 174 (206)
+ ...|+++|..+.+.+.+...++..+
T Consensus 99 kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 99 KFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 2568999999999999999998765
No 4
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=88.86 E-value=5.4 Score=29.17 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHH
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAEG-GKDAAAIHTLQRHKEILEDYKKELSK-TMSNIHSR 177 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~-~~s~s~~htLqRHREIL~Dy~~EF~R-~r~ni~~~ 177 (206)
-..+-.+|+.-|+...+++++|.--+.+. +|++... .....|.+|++++.+ ++..++..
T Consensus 32 Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~----~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 32 RNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERA----TYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37788999999999999999999877753 1223222 334456666666666 66666544
No 5
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=74.35 E-value=4.3 Score=26.46 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhh
Q psy3549 156 HKEILEDYKKELSKTMSNIHSRKE 179 (206)
Q Consensus 156 HREIL~Dy~~EF~R~r~ni~~~re 179 (206)
-+|||.+.++|+.+.|..|-.+..
T Consensus 13 KqEIL~E~RkElqK~K~EIIeAi~ 36 (45)
T 1use_A 13 KQELLEEVKKELQKVKEEIIEAFV 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999998877653
No 6
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=70.31 E-value=21 Score=23.84 Aligned_cols=60 Identities=8% Similarity=0.196 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHH
Q psy3549 117 STASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQ 182 (206)
Q Consensus 117 ~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR~n 182 (206)
.++.++++-|..|...+..+..++ ..+-.-|..|-.+|.+....|-++...|.....|..
T Consensus 3 ~~e~eqD~~Ld~L~~~v~~lk~la------~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~ 62 (66)
T 1n7s_D 3 ARENEMDENLEQVSGIIGNLRHMA------LDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 478899999999999999998863 445567999999999999999999999998887754
No 7
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=69.13 E-value=13 Score=25.41 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIH-------TLQRHKEILEDYKKELSKTMSNIHSR 177 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~h-------tLqRHREIL~Dy~~EF~R~r~ni~~~ 177 (206)
|.....+|+..|..|...++.|...=. ++.+.+-.. .+.+..+.|.++...++++-..+++.
T Consensus 21 ~~~~~~~i~~~l~~L~~~~~~L~~~W~-G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A~~~~~~ 89 (93)
T 4ioe_A 21 FKNAAGEAQSQINRLEGDINSLEGQWA-GATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIADKFRNT 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566667777777777777776642111 111222222 57788888888888888888777654
No 8
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=68.39 E-value=23 Score=27.98 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHhhHHHhh
Q psy3549 114 MIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKT--MSNIHSRKEREQLL 184 (206)
Q Consensus 114 ~~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~--r~ni~~~reR~nLL 184 (206)
++..|-++|+.+..++.++-..|..+.. .+ ..|..|+.+|.+ |+.+ --++++.++|=+-|
T Consensus 60 EYk~Lhaev~~v~~~F~~Ld~~L~~l~~---~s-------~e~~~i~~EY~r-~k~~K~dp~y~ekK~Rc~yL 121 (140)
T 1xaw_A 60 EYKSLQSVLDEINKELSRLDKELDDYRE---ES-------EEYMAAADEYNR-LKQVKGSADYKSKKNHCKQL 121 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCT---TS-------HHHHHHHHHHHH-HHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC---CC-------HHHHHHHHHHHH-HHHhcCCcHHHHHHHHHHHH
Confidence 4678888999999999999888887622 22 345567666555 4433 23467777774443
No 9
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=66.61 E-value=32 Score=24.44 Aligned_cols=63 Identities=8% Similarity=0.205 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhh
Q psy3549 116 ESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLL 184 (206)
Q Consensus 116 ~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR~nLL 184 (206)
+.++.|+++-|..|..++..|..++ -.+-.-|.+|-++|.+....+-++...|.....|..-|
T Consensus 21 d~~e~eqD~~Ld~Ls~~v~rLk~la------~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 21 DARENEMDENLEQVSGIIGNLRHMA------LDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999998873 44557799999999999999999999999988887644
No 10
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=63.31 E-value=34 Score=23.63 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAI-------HTLQRHKEILEDYKKELSKTMSNIHSRKE 179 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~-------htLqRHREIL~Dy~~EF~R~r~ni~~~re 179 (206)
|.....+|+..|..|...++.|...=. ++.+.+-. ..+++..++|.++.+.++++-.++++.-.
T Consensus 20 ~~~~~~~i~~~l~~L~~~~~~l~~~W~-G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~ 90 (98)
T 3gwk_C 20 YTAGSQQVTEVLNLLTQEQAVIDENWD-GSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDA 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBC-SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888888888864322 22223222 45777888888888888888888776544
No 11
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=57.82 E-value=40 Score=32.19 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=19.3
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhhhc
Q psy3549 69 SLRKQARKLENDIDVKLTCLSKLGT 93 (206)
Q Consensus 69 ~LRkqAR~LE~qiD~kL~sySkla~ 93 (206)
++|.+.-+||.+||.||=.-.--++
T Consensus 142 dq~~kIQRLEvDIdiqirsCKgsCs 166 (562)
T 3ghg_A 142 AQLVDMKRLEVDIDIKIRSCRGSCS 166 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTBS
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc
Confidence 6677888999999999966554444
No 12
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=54.74 E-value=67 Score=24.28 Aligned_cols=78 Identities=14% Similarity=0.320 Sum_probs=52.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-hhHHHhhhh-cc-
Q psy3549 112 DHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSR-KEREQLLHS-VR- 188 (206)
Q Consensus 112 e~~~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~-reR~nLL~s-Vr- 188 (206)
...+..++.+|+.+......+-..+.+.=. --...+..++.++.+...++.++|..+... ++-.+||.- ++
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~e~e~------~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~L 117 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLEETKG------RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRL 117 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567778887776666555555554311 112557889999999999999999998765 677777742 11
Q ss_pred -cchhhhc
Q psy3549 189 -KDIDSYK 195 (206)
Q Consensus 189 -~DI~~~k 195 (206)
-+|..|+
T Consensus 118 d~EIatYR 125 (131)
T 3tnu_A 118 EQEIATYR 125 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 4566675
No 13
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.38 E-value=88 Score=23.50 Aligned_cols=75 Identities=17% Similarity=0.362 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-hhHHHhhhh-cc--cc
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSR-KEREQLLHS-VR--KD 190 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~-reR~nLL~s-Vr--~D 190 (206)
+..++.+|+.+..+...+-..+.+.=. --...+..++.++.+...++.++|..+... ++-.+||.- ++ -+
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~------~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~E 118 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQ------RGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVE 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666665555544444444311 112457888999999999999999998765 677777742 11 45
Q ss_pred hhhhc
Q psy3549 191 IDSYK 195 (206)
Q Consensus 191 I~~~k 195 (206)
|..|+
T Consensus 119 IatYR 123 (129)
T 3tnu_B 119 IATYR 123 (129)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66676
No 14
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=45.30 E-value=17 Score=21.30 Aligned_cols=16 Identities=38% Similarity=0.794 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHhhH
Q psy3549 3 SWEDLRKQARKLENDI 18 (206)
Q Consensus 3 ~~~~lr~~ar~le~~~ 18 (206)
.|+.|-|.|-.||+.|
T Consensus 2 ewealekkcaaleskl 17 (31)
T 3ljm_A 2 EWEALEKKCAALESKL 17 (31)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5999999999999754
No 15
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=44.06 E-value=75 Score=25.79 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHh-----c-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy3549 124 TLLTKLSNTNDKMSDIMA-----E-GGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRK 178 (206)
Q Consensus 124 ~lL~kL~~vnd~M~~~~~-----~-~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~r 178 (206)
++|++|+.++..|.+... . ....+.+...|.|+++.|..=.+..+..+..+...+
T Consensus 12 ~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~ 72 (174)
T 2p22_A 12 EMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTM 72 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344445555555544322 1 112344556678888887666655555555555444
No 16
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=41.39 E-value=1e+02 Score=23.62 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=56.8
Q ss_pred chhhhHHhHHHHHhhhhccc--ch-hHhHHHHHHHHHHHHHHHHhhhhhcccC----CCCCCCCCCCCCchhhhhhHHHH
Q psy3549 47 SADHMIESTASEIETLLTKV--GW-SLRKQARKLENDIDVKLTCLSKLGTGAH----GLRSSESDTEPLLSADHMIESTA 119 (206)
Q Consensus 47 ~~~~~~~~l~~eie~LL~kl--sw-~LRkqAR~LE~qiD~kL~sySkla~~~~----~~~~s~s~~~~~~~~e~~~~~le 119 (206)
+-...|+.|++|.+.|..+- .| +.+..|-.-...+..+-.-|.++..... ..+.++ =.++ |..+-
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~-------yK~e-Y~~L~ 77 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRF-------YKSQ-YQELA 77 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-------THHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH-------HHHH-HHHHH
Confidence 34677999999999999884 57 8888888888877777666666544321 011100 1232 67777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy3549 120 SEIETLLTKLSNTNDKMSDIMA 141 (206)
Q Consensus 120 ~eIE~lL~kL~~vnd~M~~~~~ 141 (206)
.+-.+++.+|+.-+.....+++
T Consensus 78 KkYk~~~~~Ld~eI~~qe~iI~ 99 (119)
T 2avr_X 78 SKYEDALKKLEAEMEQQKAVIS 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666666666555
No 17
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=40.25 E-value=73 Score=22.57 Aligned_cols=44 Identities=16% Similarity=0.483 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-hhHHHhhhhcc----cchhhhc
Q psy3549 151 HTLQRHKEILEDYKKELSKTMSNIHSR-KEREQLLHSVR----KDIDSYK 195 (206)
Q Consensus 151 htLqRHREIL~Dy~~EF~R~r~ni~~~-reR~nLL~sVr----~DI~~~k 195 (206)
..++.++.++.+...+..++|+.+... ++-..||. |+ -+|..|+
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln-vK~~Le~EIatYR 76 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD-IKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHH
Confidence 346666777777777777777777543 45555553 22 3555565
No 18
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=39.99 E-value=85 Score=21.23 Aligned_cols=63 Identities=13% Similarity=0.306 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAA-------AIHTLQRHKEILEDYKKELSKTMSNIHSRK 178 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s-------~~htLqRHREIL~Dy~~EF~R~r~ni~~~r 178 (206)
|.....+|+..|..|...++.|...=. ++.+.+ ....+++..+.|.++...++++-.++++.-
T Consensus 21 ~~~~~~~i~~~l~~L~~~v~~L~~~W~-G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d 90 (99)
T 3zbh_A 21 YNVESSNVTELIARLDQMSHTLQGIWE-GASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTD 90 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888888887754211 101111 113466777777777777777777766543
No 19
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=36.16 E-value=92 Score=22.58 Aligned_cols=80 Identities=11% Similarity=0.260 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHhhHHHhhhhcccchhh
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSN-IHSRKEREQLLHSVRKDIDS 193 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~n-i~~~reR~nLL~sVr~DI~~ 193 (206)
|..+..++..-|.+|..+..+-+. ..+.....-+..+|+.+.+.|.|..+.-.-+.++ ...-.+|...+..+++.|..
T Consensus 8 F~~V~~D~~~ql~~l~~~~~~~~~-~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~ 86 (95)
T 2c5k_T 8 FQQVVKDTKEQLNRINNYITRHNT-AGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDA 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC-C--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 667777788877777777554110 0001112333345555555555554444443332 11122555666666655554
Q ss_pred hc
Q psy3549 194 YK 195 (206)
Q Consensus 194 ~k 195 (206)
-+
T Consensus 87 lk 88 (95)
T 2c5k_T 87 LK 88 (95)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 20
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.92 E-value=1.9e+02 Score=23.85 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=38.9
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3549 69 SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMA 141 (206)
Q Consensus 69 ~LRkqAR~LE~qiD~kL~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~ 141 (206)
++.++.+.+|++|+..=..-.++-....... +.. .|..+..||+.+=.+...+.+.+.++..
T Consensus 57 d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~----------~~k-E~~aL~kEie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 57 ALKLQVSKNEQTLQDTNAKIASIQKKMSEIK----------SER-ELRSLNIEEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS----------SSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----------CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888999888876666655544332000 112 2677888888776666666666655543
No 21
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=33.62 E-value=1.3e+02 Score=21.35 Aligned_cols=61 Identities=7% Similarity=0.204 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHH
Q psy3549 116 ESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQ 182 (206)
Q Consensus 116 ~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR~n 182 (206)
+..+.++++-|..+..++..|..++ ..+-.-|.+|-++|.+.....-++...|...-.|..
T Consensus 22 d~~e~eqD~~Ld~ls~~l~rLk~mA------~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~ 82 (87)
T 1l4a_D 22 DAREDDMENNMKEVSSMIGNLRNMA------IDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKAT 82 (87)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999874 344567999999999999999999999888776654
No 22
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=28.41 E-value=1.1e+02 Score=22.92 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHH
Q psy3549 115 IESTASEIETLLTKLSNTNDKMSDIMAE--GGKDAAAIHTLQRHKEILED 162 (206)
Q Consensus 115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~--~~~s~s~~htLqRHREIL~D 162 (206)
+..+..+.+.+..+|. ..... +|.++.++..+.+|++.|..
T Consensus 50 ~~~~~~~~~~l~~~l~-------~~~~~g~~p~s~eaq~l~~~h~~~l~~ 92 (143)
T 1ny9_A 50 WQRIQDEADELTRRFV-------ALMDAGEPADSEGAMDAAEDHRQGIAR 92 (143)
T ss_dssp CCCTTHHHHHHHHHHH-------HHHHHTCCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3444444555544444 33332 36688999999999999855
No 23
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=27.78 E-value=1.3e+02 Score=19.70 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHh
Q psy3549 121 EIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQL 183 (206)
Q Consensus 121 eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR~nL 183 (206)
+.++-|..|...+..+..+ +..+-.-|..|-++|.+....|-++...+.....|..-
T Consensus 6 eqD~~Ld~L~~~v~~lk~~------a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 6 EQDAGLDALSSIISRQKQM------GQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp --CHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665 24445668999999999999999999999998887653
No 24
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.66 E-value=1.8e+02 Score=20.63 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=13.1
Q ss_pred hHhHHHHHHHHHHHHHHH
Q psy3549 69 SLRKQARKLENDIDVKLT 86 (206)
Q Consensus 69 ~LRkqAR~LE~qiD~kL~ 86 (206)
.|..+.+.||.+++.--+
T Consensus 24 ~Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARA 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778888888887775443
No 25
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.56 E-value=2.1e+02 Score=21.38 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=16.6
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhh
Q psy3549 69 SLRKQARKLENDIDVKLTCLSKL 91 (206)
Q Consensus 69 ~LRkqAR~LE~qiD~kL~sySkl 91 (206)
.+|++...|+.+|+.....-..|
T Consensus 42 elrr~iq~L~~el~~l~~~~~sL 64 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASL 64 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 77778888888887776655554
No 26
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.82 E-value=5e+02 Score=24.74 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=19.0
Q ss_pred HHhhhhcccchhHhHHHHHHHHHHHHH
Q psy3549 58 EIETLLTKVGWSLRKQARKLENDIDVK 84 (206)
Q Consensus 58 eie~LL~klsw~LRkqAR~LE~qiD~k 84 (206)
+|+.+|.|..=++.+..-.|=+++|..
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHH
Confidence 588888884337777777777766655
No 27
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.46 E-value=2.2e+02 Score=20.50 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhhhhcc
Q psy3549 116 ESTASEIETLLTKLSNTNDKMSDIMAE-GGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVR 188 (206)
Q Consensus 116 ~~le~eIE~lL~kL~~vnd~M~~~~~~-~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR~nLL~sVr 188 (206)
+.++++|..|=.+...+..++..+... ..+.+ ...+++|=..|++| +-||..-+.-..+.--+.+|+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~--~~~~~~hI~~Lh~Y----NeiKD~gq~L~g~iA~~rgv~ 71 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDA--KQTVQKHIDLLHTY----NEIRDIALGMIGKVAEHEKCT 71 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHcCCc
Confidence 356666666666666666666555332 11222 35689999999865 556666666555555555554
No 28
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=22.12 E-value=1.3e+02 Score=18.20 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3549 116 ESTASEIETLLTKLSNTNDKMSDI 139 (206)
Q Consensus 116 ~~le~eIE~lL~kL~~vnd~M~~~ 139 (206)
..++..+|+++.+..+.-+..+++
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHH
Confidence 457778888888877776666654
No 29
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=21.30 E-value=68 Score=18.87 Aligned_cols=19 Identities=47% Similarity=0.644 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhHhhhhhhh
Q psy3549 7 LRKQARKLENDIDVKLTCL 25 (206)
Q Consensus 7 lr~~ar~le~~~d~kl~~~ 25 (206)
|||+-|+.-|.|..||--.
T Consensus 2 lrkrlrkfrnkikeklkki 20 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKLKKI 20 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7999999999999988543
No 30
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=20.99 E-value=2.1e+02 Score=19.68 Aligned_cols=59 Identities=17% Similarity=0.225 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhhh
Q psy3549 121 EIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLH 185 (206)
Q Consensus 121 eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR~nLL~ 185 (206)
+-++-|..|...+..+..+ +..+-.-|..|-++|.+...+|-++...+.....|..-+.
T Consensus 16 eQD~~Ld~L~~~v~~LK~~------a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~ 74 (82)
T 2nps_D 16 MQDEQLELVSGSIGVLKNM------SQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVS 74 (82)
T ss_dssp --CCTHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666665 2344466899999999999999999999999999887653
No 31
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.99 E-value=2.2e+02 Score=19.83 Aligned_cols=69 Identities=13% Similarity=0.276 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-hhHHHhhhh-cc--cchhhhc
Q psy3549 121 EIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSR-KEREQLLHS-VR--KDIDSYK 195 (206)
Q Consensus 121 eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~-reR~nLL~s-Vr--~DI~~~k 195 (206)
||+.+..+...+-..+.+.-. -....+..++.++.....+..++|..+... ++-.+||.- ++ -+|..|+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~------~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEE------NFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 455555554444444443211 112457778888888889999999888654 667777732 11 4667776
No 32
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=20.59 E-value=1.5e+02 Score=17.97 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3549 116 ESTASEIETLLTKLSNTNDKMSDI 139 (206)
Q Consensus 116 ~~le~eIE~lL~kL~~vnd~M~~~ 139 (206)
..++..+|+||.+-.++-+..+++
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 467888899988877766665554
No 33
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.58 E-value=2.2e+02 Score=19.74 Aligned_cols=45 Identities=16% Similarity=0.425 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-hhHHHhhhh-cc--cchhhhc
Q psy3549 151 HTLQRHKEILEDYKKELSKTMSNIHSR-KEREQLLHS-VR--KDIDSYK 195 (206)
Q Consensus 151 htLqRHREIL~Dy~~EF~R~r~ni~~~-reR~nLL~s-Vr--~DI~~~k 195 (206)
+-.+.|+.++.....+..++++.+... ++-..||.- ++ -+|..|+
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777766544 455555522 11 4556665
Done!