RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3549
(206 letters)
>gnl|CDD|236345 PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed.
Length = 404
Score = 32.6 bits (75), Expect = 0.11
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 117 STASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNI 174
+ + + L L N + + A G A ++ L + + ED K + + +S++
Sbjct: 312 ALQNALAQALRNLDNALNNVLTARASVG---ARLNELDSAEAVHEDNKLQNTSALSDL 366
>gnl|CDD|221757 pfam12761, End3, Actin cytoskeleton-regulatory complex protein
END3. Endocytosis is accomplished through the
sequential recruitment at endocytic sites of proteins
that drive cargo sorting, membrane invagination and
vesicle release. End3p is part of the coat module
protein complex Pan1, along with Pan1p, Sla1p, and
Sla2p. The proteins in this complex are regulated by
phosphorylation events. End3p also regulates the
cortical actin cytoskeleton. The subunits of the Pan1
complex are homologous to mammalian intersectin.
Length = 193
Score = 29.6 bits (67), Expect = 0.77
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 88 LSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIM--AEGGK 145
LSKLG G + S +D SA + T E L +L+ K+S +E
Sbjct: 71 LSKLGVGGNSYNESGTD----FSA---TQGTDWEEVRLRRELAELESKLSKAQQESESRN 123
Query: 146 DAAAIHTLQRHK-EILEDYKKELSKTMSNIHSRKEREQLLHSVRKDIDSYKNSASGL 201
DA L + + E L YK+ + + R L SVR+DIDS + +GL
Sbjct: 124 DAKPNSALVKRELEQLLKYKEN---QLRELGGRSSNGVNLGSVREDIDSIEEQVTGL 177
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 29.7 bits (67), Expect = 1.5
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 15/107 (14%)
Query: 115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEIL----EDYKKELSKT 170
I +EI +L ++ ++ D K A I L E L E+ +K K
Sbjct: 296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL 355
Query: 171 MSNIHSRKEREQLLHS-----------VRKDIDSYKNSASGLNRRMD 206
KE + L + R ++ Y+ L R ++
Sbjct: 356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN 402
>gnl|CDD|149804 pfam08859, DGC, DGC domain. This domain appears to be a zinc
binding domain from the conservation of four potential
chelating cysteines. The domain is named after a
conserved central motif. The function of this domain is
unknown.
Length = 110
Score = 28.0 bits (63), Expect = 1.6
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 63 LTKVGWSLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSAD 112
+ VG + A +L+ + +++CL+ +G G GL P+++ D
Sbjct: 9 CSNVGQLANEAAVELDREGGGEMSCLAGVGGGVEGLVKLARSGRPIIAID 58
Score = 27.2 bits (61), Expect = 3.0
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 8 RKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSAD 49
+ A +L+ + +++CL+ +G G GL P+++ D
Sbjct: 17 NEAAVELDREGGGEMSCLAGVGGGVEGLVKLARSGRPIIAID 58
>gnl|CDD|222386 pfam13798, PCYCGC, Protein of unknown function with PCYCGC motif.
This domain contains a PCYCGC motif and four other
conserved cysteines. Its function is unknown.
Length = 157
Score = 28.5 bits (64), Expect = 1.6
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 100 SSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEI 159
S + D + E TAS I+ L T L + ++ ++ I K H+E+
Sbjct: 24 HSHHTKHEHANGD-IQEETAS-IDVLPTFLDSQDESIATIYQVAAK----------HREL 71
Query: 160 LE 161
LE
Sbjct: 72 LE 73
>gnl|CDD|132855 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like phospholipase.
Patatin is a storage protein of the potato tuber that
shows Phospholipase A2 activity (PLA2; EC 3.1.1.4).
Patatin catalyzes the nonspecific hydrolysis of
phospholipids, glycolipids, sulfolipids, and mono- and
diacylglycerols, thereby showing lipid acyl hydrolase
activity. The active site includes an oxyanion hole with
a conserved GGxR motif; it is found in almost all the
members of this family. The catalytic dyad is formed by
a serine and an aspartate. Patatin belongs to the
alpha-beta hydrolase family which is identified by a
characteristic nucleophile elbow with a consensus
sequence of Sm-X-Nu-Sm (Sm = small residue, X = any
residue and Nu = nucleophile). Members of this family
have been found also in vertebrates. This family
includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9
(iPLA2-beta) like phospholipases from human as well as
the Pat17 isozyme from Solanum cardiophyllum.
Length = 309
Score = 28.4 bits (64), Expect = 2.4
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 11/69 (15%)
Query: 74 ARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTN 133
A L + + CL +GTG ++S E A ++ L +++T
Sbjct: 210 AVSLWEGLARLVGCLVSIGTGTPSIKSLGRSAEG-----------AGLLKGLKDLVTDTE 258
Query: 134 DKMSDIMAE 142
+ AE
Sbjct: 259 AEAKRFSAE 267
>gnl|CDD|240332 PTZ00255, PTZ00255, 60S ribosomal protein L37a; Provisional.
Length = 90
Score = 26.6 bits (59), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 64 TKVGWSLRKQARKLENDIDVKLTC 87
T+ G SLRKQ +K+E K C
Sbjct: 16 TRYGASLRKQIKKIEISQHAKYFC 39
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.0 bits (63), Expect = 4.3
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 120 SEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHT---------LQRHKEILEDYKKELSKT 170
++ +LLTKLS DK+ + + ++ +E LE +KE+ +
Sbjct: 46 RKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKEL 105
Query: 171 MSNIHSRKEREQLLHSVRKDIDSYKN 196
I + + L + ++ + N
Sbjct: 106 EEEISELENEIKELEQEIERLEPWGN 131
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 27.7 bits (62), Expect = 5.2
Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 9/126 (7%)
Query: 72 KQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSN 131
Q D K+ KL H L ++ + L + ++ L K+S
Sbjct: 291 TQQISEGPDRITKIK--DKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIST 348
Query: 132 TNDKMSDIMAEGGKDAAAIHTLQ-----RHKEI--LEDYKKELSKTMSNIHSRKEREQLL 184
+ ++ + K AAI LQ +E+ L+D ++ KT S + K ++
Sbjct: 349 NKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIV 408
Query: 185 HSVRKD 190
+ KD
Sbjct: 409 TDLLKD 414
>gnl|CDD|218300 pfam04870, Moulting_cycle, Moulting cycle. This family of proteins
plays a role in the moulting cycle of nematodes, which
involves the synthesis of a new collagen-rich cuticle
underneath the existing cuticle and the subsequent
removal of the old cuticle.
Length = 323
Score = 27.0 bits (60), Expect = 7.6
Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 5/112 (4%)
Query: 78 ENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMS 137
++++ KL+ LG+ + DT+ L A +E L + K
Sbjct: 161 GSELEQKLSLPKLLGSL-----MEDKDTDSFLDLVMEASGVAEAVEDAEKMLKDLERKEL 215
Query: 138 DIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVRK 189
D T + E Y+ + M + +EQL
Sbjct: 216 DGDFVDPDGQPMYFTKENVTEAYGPYEARKIELMEKLDKSYSKEQLKEMNST 267
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 27.3 bits (61), Expect = 7.6
Identities = 8/50 (16%), Positives = 23/50 (46%)
Query: 157 KEILEDYKKELSKTMSNIHSRKEREQLLHSVRKDIDSYKNSASGLNRRMD 206
+E+++ Y+ + K + + S + E+ + D++ K L ++
Sbjct: 288 EELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKALLEALEEILE 337
>gnl|CDD|173155 PRK14692, PRK14692, lagellar hook-associated protein FlgL;
Provisional.
Length = 749
Score = 27.2 bits (60), Expect = 8.2
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 152 TLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVRKDIDSYKNS 197
LQ ++LED+K ++++ S+ +S+ RE ++ K+++ K S
Sbjct: 79 ALQDMVKLLEDFKVKVTQAASDSNSQTSRE----AIAKELERIKES 120
>gnl|CDD|219740 pfam08192, Peptidase_S64, Peptidase family S64. This family of
fungal proteins is involved in the processing of
membrane bound transcription factor Stp1. The processing
causes the signalling domain of Stp1 to be passed to the
nucleus where several permease genes are induced. The
permeases are important for uptake of amino acids, and
processing of tp1 only occurs in an amino acid-rich
environment. This family is predicted to be distantly
related to the trypsin family (MEROPS:S1) and to have a
typical trypsin-like catalytic triad.
Length = 644
Score = 27.0 bits (60), Expect = 8.7
Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 93 TGAHGLRSSESDTEPL----LSADHMIESTASEIETLLTKLSNTNDKMSDIM 140
T G +SS + ++PL ++ + ++E+E ++ +L + ++ IM
Sbjct: 80 TQFSGDKSSGTSSQPLQTLNINEESEESPDSNELEYVVDELKQLYEDLAYIM 131
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.125 0.335
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,663,220
Number of extensions: 846754
Number of successful extensions: 948
Number of sequences better than 10.0: 1
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 90
Length of query: 206
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 114
Effective length of database: 6,857,034
Effective search space: 781701876
Effective search space used: 781701876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (25.8 bits)