RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3549
(206 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 2e-04
Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 52/197 (26%)
Query: 22 LTCLSK-LGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKVGWSLRKQARKLEND 80
+ L K L L T P + +I S + L T W KL
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLS--II--AESIRDGLATWDNW-KHVNCDKLTTI 358
Query: 81 IDVKLTCLS---------KLGTGAHGLRSSESDTEPLLSADHMI--ESTASEIETLLTKL 129
I+ L L +L S LLS +I + S++ ++ KL
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSV----FPPSAHIPTILLS---LIWFDVIKSDVMVVVNKL 411
Query: 130 SNTNDKMSDIMAEGGKDAAAIHTLQR------------HKEILEDYKKELSKTMSNIHSR 177
K S + + + +I ++ H+ I++ Y NI
Sbjct: 412 H----KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY---------NIPKT 458
Query: 178 KEREQLLHSVRKDIDSY 194
+ + L+ +D Y
Sbjct: 459 FDSDDLI---PPYLDQY 472
Score = 32.5 bits (73), Expect = 0.10
Identities = 32/209 (15%), Positives = 58/209 (27%), Gaps = 58/209 (27%)
Query: 4 WEDLRKQ-----ARKLEN----------------DIDVKLTCLSKLGTGAH--------G 34
W D+ K KL I ++L + H
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 35 LRSSESDTEPLLSAD---------HMIESTASEIETLLTKVGWSLRKQARKLENDIDVKL 85
++ +SD D H+ E TL V R +K+ +D
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAW 514
Query: 86 TCLSKLGTGAHGLRSSE---SDTEPLLSADHMIESTASEIETLLTKLSNT--NDKMSDIM 140
+ L+ + D +P E + I L K+ K +D++
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKY------ERLVNAILDFLPKIEENLICSKYTDLL 568
Query: 141 AEGGKDAAAIHTLQRHKEILEDYKKELSK 169
I + + I E+ K++ +
Sbjct: 569 --------RIALMAEDEAIFEEAHKQVQR 589
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.001
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 25/53 (47%)
Query: 9 KQA-RKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIE 60
KQA +KL+ + KL D+ P L+ I++T +E
Sbjct: 19 KQALKKLQASL--KLY---------------ADDSAPALA----IKAT---ME 47
Score = 36.9 bits (84), Expect = 0.001
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 25/53 (47%)
Query: 72 KQA-RKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIE 123
KQA +KL+ + KL D+ P L+ I++T +E
Sbjct: 19 KQALKKLQASL--KLY---------------ADDSAPALA----IKAT---ME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.026
Identities = 32/232 (13%), Positives = 63/232 (27%), Gaps = 80/232 (34%)
Query: 2 NSWEDLRKQARKLENDIDVKLTCLSKLGTGAHG-----------LRSSESDTE----PLL 46
+SWE RK +T L +G + L S + E P+L
Sbjct: 287 DSWESFFVSVRKA-------ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 47 SADHMIESTASEIETLLTKVGWSLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTE 106
S ++ T +++ + K L +++ L
Sbjct: 340 SISNL---TQEQVQDYVNKTNSHLPA-----GKQVEISLVN------------------- 372
Query: 107 PLLSADHMIES-TASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQR---------- 155
A +++ S + L L A G D + I +R
Sbjct: 373 ---GAKNLVVSGPPQSLYGLNLTLRK-------AKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 156 -----HKEILEDYKKELSKTMSNIHSRKEREQL---LHSVR--KDIDSYKNS 197
H +L ++K + + + + ++ D+ S
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.45
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 17/72 (23%)
Query: 148 AAIHTLQRHKEIL----EDYKKELSKTMSNIHSRKEREQLLHSVRKDIDSY--------- 194
A L + E + E+ +K L + + S+ ++ +KD++ +
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAA--SKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 195 KNSASGLNRRMD 206
KN + NR D
Sbjct: 133 KNKIN--NRIAD 142
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein,
alpha-helical bundle, complex all- beta folds,
structural protein; 1.90A {Salmonella typhimurium}
Length = 248
Score = 29.7 bits (66), Expect = 0.54
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 107 PLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKE 166
P+ + E A+ I+ L N+ + + + AE G + L + D
Sbjct: 176 PVEGNNVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELG---TQLSELSTLDSLGSDRALG 232
Query: 167 LSKTMSNI 174
MSN+
Sbjct: 233 QKLQMSNL 240
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics,
structural protein, PSI-2, protein STRU initiative;
2.50A {Vibrio parahaemolyticus}
Length = 239
Score = 28.5 bits (63), Expect = 1.3
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 116 ESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNI 174
+ +E++ L + +T + M E G + L + K + K ++
Sbjct: 170 PNFQAEVDASLNAIDDTMANVLGAMTEIG---GRHNNLDLMDGAHSENKLFVDKVSGDL 225
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 1.7
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 1 MNSWEDLRKQARKLENDIDVKLTC 24
M + E + K+A + ++++ LTC
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTC 24
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 27.7 bits (61), Expect = 2.7
Identities = 20/127 (15%), Positives = 47/127 (37%)
Query: 64 TKVGWSLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIE 123
++ + R+Q LE++ + L + + + ++ T+ +A ++T ++E
Sbjct: 223 LRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLE 282
Query: 124 TLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQL 183
D G+ A+ K E KT N + +K E+
Sbjct: 283 DKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERA 342
Query: 184 LHSVRKD 190
+++K+
Sbjct: 343 RSTLQKE 349
>2fyz_A Fusion protein, fusion glycoprotein F0; mumps virus fusion protein
core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Length = 63
Score = 25.7 bits (56), Expect = 3.6
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 119 ASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRH 156
A I + + TN + ++ + A A+ +Q H
Sbjct: 16 ARAIAAMKNSIQATNRAVFEVKEGTQRLAIAVQAIQDH 53
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 26.1 bits (58), Expect = 4.6
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 147 AAAIHTLQRHKEILEDYKK--ELSKTMSNIHSRKEREQLLHSVRK 189
A A ++ + LE ++N S +E +QL + +
Sbjct: 79 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 26.8 bits (60), Expect = 6.0
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 145 KDAAAIHTLQRHKEILEDYKKELSKTMS 172
KD A LQR K+ E KKELS
Sbjct: 223 KDKMA---LQRLKDAAEKAKKELSGVTQ 247
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 26.7 bits (60), Expect = 6.4
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 145 KDAAAIHTLQRHKEILEDYKKELSKTMS 172
D A +QR KE E K ELS
Sbjct: 254 NDPLA---MQRLKEAAEKAKIELSSAQQ 278
>1svf_A Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil,
viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Length = 64
Score = 24.9 bits (54), Expect = 6.7
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 119 ASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRH 156
A+ I L + TN ++D++ A+ +Q H
Sbjct: 13 AAAILNLKNAIQKTNAAVADVVQATQSLGTAVQAVQDH 50
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 26.4 bits (59), Expect = 9.0
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 145 KDAAAIHTLQRHKEILEDYKKELSKTMS 172
D A +QR KE E K ELS
Sbjct: 254 NDPLA---MQRLKEAAEKAKIELSSAQQ 278
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.125 0.335
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,799,515
Number of extensions: 148234
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 33
Length of query: 206
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 117
Effective length of database: 4,216,824
Effective search space: 493368408
Effective search space used: 493368408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.4 bits)