RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3549
         (206 letters)



>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 175

 Score = 28.3 bits (62), Expect = 0.46
 Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 4/56 (7%)

Query: 107 PLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDA----AAIHTLQRHKE 158
            +      I+     +E  +                   DA    A ++ LQ  K+
Sbjct: 119 SISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQ 174


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.125    0.335 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 660,359
Number of extensions: 25861
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 7
Length of query: 206
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,295,466
Effective search space: 161933250
Effective search space used: 161933250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.6 bits)