Query psy355
Match_columns 285
No_of_seqs 231 out of 1307
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 19:33:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2160|consensus 100.0 2.3E-39 5E-44 287.8 25.6 272 3-278 51-335 (342)
2 KOG0166|consensus 100.0 9.4E-38 2E-42 291.0 22.8 258 18-279 229-492 (514)
3 COG5064 SRP1 Karyopherin (impo 100.0 6.7E-36 1.5E-40 262.4 17.9 253 18-276 235-499 (526)
4 KOG0166|consensus 99.9 1.6E-24 3.5E-29 202.5 15.8 197 26-228 113-312 (514)
5 COG5064 SRP1 Karyopherin (impo 99.9 1.3E-22 2.8E-27 178.9 14.2 199 42-246 133-338 (526)
6 PLN03200 cellulose synthase-in 99.9 8.4E-21 1.8E-25 200.2 26.9 230 41-276 380-641 (2102)
7 PLN03200 cellulose synthase-in 99.9 1E-19 2.2E-24 192.1 28.9 237 27-276 451-726 (2102)
8 KOG4224|consensus 99.8 7.1E-17 1.5E-21 143.9 19.1 189 38-233 181-372 (550)
9 cd00020 ARM Armadillo/beta-cat 99.7 2.7E-16 5.8E-21 121.5 15.0 119 60-179 2-120 (120)
10 cd00020 ARM Armadillo/beta-cat 99.6 1.7E-14 3.6E-19 111.4 14.3 118 102-223 2-119 (120)
11 KOG4224|consensus 99.6 5.1E-14 1.1E-18 125.8 14.4 185 38-227 265-449 (550)
12 KOG2160|consensus 99.5 1.2E-11 2.5E-16 111.0 22.8 184 39-228 59-244 (342)
13 PF10508 Proteasom_PSMB: Prote 99.4 5.5E-11 1.2E-15 114.7 23.7 182 39-228 53-234 (503)
14 PF05804 KAP: Kinesin-associat 99.4 1.8E-10 3.9E-15 113.6 24.8 197 39-245 264-460 (708)
15 PF04826 Arm_2: Armadillo-like 99.3 3.3E-10 7.1E-15 99.6 20.1 196 21-226 11-207 (254)
16 KOG4199|consensus 99.3 2.7E-10 5.9E-15 101.2 18.9 178 40-222 258-442 (461)
17 PF04826 Arm_2: Armadillo-like 99.3 1.2E-10 2.5E-15 102.4 16.1 157 62-228 9-167 (254)
18 KOG4199|consensus 99.3 1.5E-09 3.3E-14 96.5 22.4 198 27-228 194-407 (461)
19 PF10508 Proteasom_PSMB: Prote 99.3 2.3E-09 5E-14 103.5 25.1 178 24-204 75-255 (503)
20 PF05804 KAP: Kinesin-associat 99.2 3.8E-09 8.3E-14 104.4 23.6 179 38-228 304-483 (708)
21 PF08609 Fes1: Nucleotide exch 99.1 1.3E-10 2.8E-15 86.1 5.3 59 3-61 32-92 (92)
22 KOG0168|consensus 99.0 6E-09 1.3E-13 101.8 15.7 198 19-226 164-366 (1051)
23 PF03224 V-ATPase_H_N: V-ATPas 99.0 3.8E-08 8.3E-13 89.4 18.8 223 1-228 26-273 (312)
24 KOG1048|consensus 99.0 9.1E-09 2E-13 100.2 14.9 179 67-249 235-427 (717)
25 KOG1517|consensus 99.0 9.5E-09 2.1E-13 102.2 14.2 185 39-226 485-673 (1387)
26 KOG1293|consensus 98.9 2.4E-08 5.3E-13 95.4 15.4 172 55-230 367-539 (678)
27 KOG1048|consensus 98.9 2.1E-08 4.6E-13 97.7 12.8 197 23-223 234-451 (717)
28 PRK09687 putative lyase; Provi 98.9 1.1E-07 2.3E-12 85.2 15.9 169 24-222 25-219 (280)
29 PF00514 Arm: Armadillo/beta-c 98.7 5.5E-08 1.2E-12 61.0 5.7 41 96-137 1-41 (41)
30 cd00256 VATPase_H VATPase_H, r 98.7 1.8E-05 3.9E-10 74.4 24.7 221 1-226 26-260 (429)
31 PRK09687 putative lyase; Provi 98.7 7.8E-07 1.7E-11 79.6 14.4 155 38-223 68-249 (280)
32 PF05536 Neurochondrin: Neuroc 98.5 8.9E-06 1.9E-10 79.2 19.1 197 20-226 3-215 (543)
33 KOG4500|consensus 98.5 3.8E-06 8.3E-11 77.4 15.1 149 75-226 52-211 (604)
34 PF12348 CLASP_N: CLASP N term 98.5 1E-06 2.2E-11 76.2 10.4 189 32-230 15-212 (228)
35 KOG1293|consensus 98.5 1.2E-05 2.5E-10 77.5 17.7 150 39-191 392-545 (678)
36 KOG0946|consensus 98.5 2.1E-05 4.6E-10 77.1 19.6 183 21-204 60-266 (970)
37 KOG2122|consensus 98.5 2.1E-06 4.7E-11 88.3 13.2 227 2-231 251-566 (2195)
38 PTZ00429 beta-adaptin; Provisi 98.4 0.00014 3.1E-09 73.1 25.4 180 19-228 32-212 (746)
39 KOG0946|consensus 98.4 8.3E-06 1.8E-10 79.8 16.0 217 7-228 2-245 (970)
40 KOG2171|consensus 98.4 1.6E-05 3.5E-10 80.7 18.4 153 69-228 352-508 (1075)
41 PF00514 Arm: Armadillo/beta-c 98.4 6.3E-07 1.4E-11 56.2 5.3 41 139-179 1-41 (41)
42 PF01602 Adaptin_N: Adaptin N 98.4 9.7E-06 2.1E-10 78.4 16.1 171 39-230 57-227 (526)
43 PF13513 HEAT_EZ: HEAT-like re 98.4 5.8E-07 1.3E-11 60.0 5.3 55 79-135 1-55 (55)
44 KOG0168|consensus 98.4 1.5E-05 3.3E-10 78.6 16.9 232 38-277 226-474 (1051)
45 PF13646 HEAT_2: HEAT repeats; 98.4 1E-06 2.2E-11 64.3 7.0 86 67-175 1-88 (88)
46 KOG2171|consensus 98.4 0.00011 2.3E-09 75.0 22.9 194 27-230 252-467 (1075)
47 KOG2122|consensus 98.4 3.2E-06 6.9E-11 87.1 12.1 185 40-228 413-605 (2195)
48 PF01602 Adaptin_N: Adaptin N 98.3 5.4E-05 1.2E-09 73.3 19.3 175 27-227 9-183 (526)
49 PRK13800 putative oxidoreducta 98.3 5.3E-05 1.2E-09 78.3 20.2 132 66-222 715-865 (897)
50 PF08045 CDC14: Cell division 98.3 1.4E-05 3E-10 70.0 13.5 103 78-180 104-208 (257)
51 PF03224 V-ATPase_H_N: V-ATPas 98.3 3.1E-05 6.7E-10 70.4 16.0 173 39-214 120-304 (312)
52 KOG3678|consensus 98.3 1E-05 2.2E-10 75.4 12.3 160 61-226 176-338 (832)
53 PRK13800 putative oxidoreducta 98.3 5.8E-05 1.3E-09 78.0 18.9 129 68-222 687-834 (897)
54 KOG4500|consensus 98.3 1.6E-05 3.5E-10 73.3 12.8 164 62-227 84-256 (604)
55 PF09759 Atx10homo_assoc: Spin 98.3 7.5E-06 1.6E-10 61.6 8.8 67 81-147 2-69 (102)
56 PTZ00429 beta-adaptin; Provisi 98.2 0.0011 2.4E-08 66.8 24.2 140 66-221 106-245 (746)
57 PF13646 HEAT_2: HEAT repeats; 98.1 7.7E-06 1.7E-10 59.6 6.2 88 109-220 1-88 (88)
58 PF13513 HEAT_EZ: HEAT-like re 98.0 1E-05 2.2E-10 53.9 5.1 55 122-177 1-55 (55)
59 cd00256 VATPase_H VATPase_H, r 98.0 0.00074 1.6E-08 63.6 18.8 183 39-225 159-426 (429)
60 PF09759 Atx10homo_assoc: Spin 98.0 3.9E-05 8.4E-10 57.8 8.3 67 124-190 2-70 (102)
61 KOG4646|consensus 98.0 8.1E-05 1.8E-09 58.6 10.0 121 74-197 26-146 (173)
62 smart00185 ARM Armadillo/beta- 98.0 1.7E-05 3.6E-10 49.1 5.1 39 56-94 3-41 (41)
63 PF11841 DUF3361: Domain of un 97.9 0.00046 1E-08 56.1 13.2 128 57-185 3-137 (160)
64 KOG1241|consensus 97.9 0.00084 1.8E-08 66.0 16.6 162 66-230 365-536 (859)
65 PF11698 V-ATPase_H_C: V-ATPas 97.9 2.4E-05 5.2E-10 60.4 5.0 87 8-96 30-117 (119)
66 KOG1517|consensus 97.9 0.00036 7.9E-09 70.6 14.3 171 55-228 544-736 (1387)
67 KOG2759|consensus 97.8 0.0018 4E-08 59.8 17.2 202 20-225 153-439 (442)
68 KOG2759|consensus 97.8 0.0074 1.6E-07 55.9 20.8 198 21-227 64-274 (442)
69 smart00185 ARM Armadillo/beta- 97.8 6.7E-05 1.4E-09 46.3 5.3 38 141-178 3-40 (41)
70 PF14664 RICTOR_N: Rapamycin-i 97.7 0.001 2.2E-08 62.0 14.7 185 36-229 80-274 (371)
71 COG5369 Uncharacterized conser 97.7 0.00018 4E-09 68.1 8.4 141 83-227 407-548 (743)
72 PF05536 Neurochondrin: Neuroc 97.7 0.0041 8.8E-08 60.8 17.9 153 67-227 7-171 (543)
73 KOG1062|consensus 97.6 0.0064 1.4E-07 60.3 19.0 215 39-276 86-326 (866)
74 PF11698 V-ATPase_H_C: V-ATPas 97.6 0.0001 2.3E-09 56.9 5.4 73 107-179 43-115 (119)
75 PF05918 API5: Apoptosis inhib 97.6 0.0039 8.5E-08 60.4 17.1 179 67-269 25-203 (556)
76 PF14664 RICTOR_N: Rapamycin-i 97.6 0.015 3.3E-07 54.1 20.3 222 38-272 39-268 (371)
77 KOG2023|consensus 97.6 0.00084 1.8E-08 65.2 11.7 107 68-180 396-506 (885)
78 KOG1061|consensus 97.6 0.0061 1.3E-07 60.2 17.6 163 41-228 31-193 (734)
79 TIGR02270 conserved hypothetic 97.5 0.0012 2.5E-08 62.3 12.0 118 67-222 88-205 (410)
80 PF12348 CLASP_N: CLASP N term 97.5 0.0029 6.4E-08 54.4 13.8 184 75-272 17-205 (228)
81 PF12460 MMS19_C: RNAPII trans 97.5 0.0043 9.2E-08 58.7 15.9 128 67-199 273-413 (415)
82 PF05004 IFRD: Interferon-rela 97.5 0.038 8.3E-07 50.2 21.3 195 22-227 43-260 (309)
83 KOG3678|consensus 97.5 0.0038 8.3E-08 58.6 14.7 175 24-202 182-361 (832)
84 KOG4413|consensus 97.5 0.0029 6.4E-08 57.0 13.4 154 67-224 84-243 (524)
85 COG5369 Uncharacterized conser 97.5 0.00034 7.3E-09 66.4 7.2 163 61-227 427-597 (743)
86 COG5096 Vesicle coat complex, 97.5 0.0057 1.2E-07 61.1 16.1 163 38-225 33-196 (757)
87 KOG0213|consensus 97.5 0.00048 1E-08 67.6 8.3 148 68-225 802-955 (1172)
88 KOG1824|consensus 97.4 0.0033 7.2E-08 63.3 14.2 191 25-231 820-1043(1233)
89 COG1413 FOG: HEAT repeat [Ener 97.4 0.0018 3.8E-08 59.2 11.5 138 66-226 75-244 (335)
90 KOG2023|consensus 97.4 0.0013 2.8E-08 64.0 10.6 149 73-230 98-250 (885)
91 KOG4646|consensus 97.4 0.0056 1.2E-07 48.4 12.3 108 38-147 31-138 (173)
92 KOG1222|consensus 97.4 0.024 5.1E-07 53.7 18.2 208 46-271 448-661 (791)
93 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.0023 4.9E-08 47.9 9.0 94 124-224 2-96 (97)
94 PF12717 Cnd1: non-SMC mitotic 97.2 0.068 1.5E-06 44.4 18.1 95 78-182 1-96 (178)
95 TIGR02270 conserved hypothetic 97.2 0.042 9.2E-07 51.8 18.4 88 66-177 118-205 (410)
96 COG5181 HSH155 U2 snRNP splice 97.2 0.00082 1.8E-08 64.8 6.8 152 67-225 606-760 (975)
97 PF10165 Ric8: Guanine nucleot 97.2 0.013 2.7E-07 56.1 14.5 178 44-222 1-216 (446)
98 PF12755 Vac14_Fab1_bd: Vacuol 97.2 0.0059 1.3E-07 45.7 9.8 91 82-177 3-94 (97)
99 KOG1059|consensus 97.1 0.016 3.6E-07 57.0 14.9 153 66-226 182-367 (877)
100 PF11841 DUF3361: Domain of un 97.1 0.016 3.6E-07 47.1 12.5 128 99-230 3-137 (160)
101 PF02985 HEAT: HEAT repeat; I 97.1 0.00095 2E-08 38.9 3.8 29 67-95 2-30 (31)
102 KOG2259|consensus 97.1 0.0058 1.3E-07 59.5 11.2 179 39-226 194-441 (823)
103 PF12460 MMS19_C: RNAPII trans 97.1 0.11 2.5E-06 49.1 20.0 198 18-231 185-401 (415)
104 PF12717 Cnd1: non-SMC mitotic 97.0 0.02 4.3E-07 47.7 12.3 95 121-228 1-97 (178)
105 KOG1789|consensus 97.0 0.028 6.1E-07 57.7 14.8 138 39-180 1740-1884(2235)
106 PF06371 Drf_GBD: Diaphanous G 96.9 0.0079 1.7E-07 50.1 9.2 110 108-223 67-186 (187)
107 KOG1241|consensus 96.9 0.011 2.5E-07 58.3 11.0 154 65-230 319-483 (859)
108 PF08045 CDC14: Cell division 96.8 0.028 6.1E-07 49.4 12.5 104 122-226 105-209 (257)
109 KOG4413|consensus 96.8 0.057 1.2E-06 48.9 14.3 180 22-204 78-267 (524)
110 KOG1222|consensus 96.8 0.087 1.9E-06 50.0 15.6 232 5-246 234-475 (791)
111 PF11707 Npa1: Ribosome 60S bi 96.7 0.074 1.6E-06 48.8 15.1 159 67-228 58-241 (330)
112 KOG2734|consensus 96.7 0.21 4.5E-06 47.0 17.7 188 39-227 99-309 (536)
113 COG1413 FOG: HEAT repeat [Ener 96.7 0.032 6.9E-07 50.9 12.4 136 65-226 43-211 (335)
114 PF14668 RICTOR_V: Rapamycin-i 96.7 0.013 2.9E-07 41.3 7.5 63 82-146 4-66 (73)
115 KOG2973|consensus 96.7 0.086 1.9E-06 47.3 14.3 161 68-237 6-173 (353)
116 KOG1062|consensus 96.7 0.037 8.1E-07 55.1 13.1 140 77-227 246-417 (866)
117 cd03569 VHS_Hrs_Vps27p VHS dom 96.6 0.042 9E-07 44.1 11.3 72 66-137 42-114 (142)
118 KOG1242|consensus 96.6 0.081 1.8E-06 51.3 14.7 170 39-226 269-446 (569)
119 KOG1991|consensus 96.6 0.41 8.8E-06 49.0 19.8 117 23-142 411-537 (1010)
120 PF08569 Mo25: Mo25-like; Int 96.6 0.6 1.3E-05 42.9 19.8 144 78-226 136-285 (335)
121 KOG2999|consensus 96.6 0.15 3.2E-06 49.1 15.8 162 18-182 79-245 (713)
122 COG5096 Vesicle coat complex, 96.5 0.22 4.8E-06 50.1 17.8 104 66-180 93-196 (757)
123 KOG0414|consensus 96.5 0.063 1.4E-06 55.6 14.1 145 65-227 918-1067(1251)
124 KOG1060|consensus 96.5 1 2.2E-05 45.3 21.3 158 39-222 50-207 (968)
125 PF10165 Ric8: Guanine nucleot 96.4 0.066 1.4E-06 51.2 13.1 134 96-229 11-173 (446)
126 KOG2734|consensus 96.4 0.87 1.9E-05 42.9 19.8 206 19-226 176-402 (536)
127 KOG2025|consensus 96.4 0.33 7.2E-06 48.1 17.2 129 38-174 59-188 (892)
128 PF12719 Cnd3: Nuclear condens 96.3 0.19 4.1E-06 45.3 14.8 110 65-180 26-144 (298)
129 PF13764 E3_UbLigase_R4: E3 ub 96.3 1.6 3.5E-05 44.7 22.4 241 21-273 119-406 (802)
130 PF11701 UNC45-central: Myosin 96.3 0.05 1.1E-06 44.4 9.9 146 66-220 4-155 (157)
131 KOG0212|consensus 96.3 0.44 9.4E-06 46.1 17.1 203 6-228 271-484 (675)
132 KOG1059|consensus 96.2 0.093 2E-06 51.9 12.9 175 42-231 127-335 (877)
133 smart00288 VHS Domain present 96.2 0.099 2.1E-06 41.4 10.7 72 66-137 38-111 (133)
134 PF02985 HEAT: HEAT repeat; I 96.1 0.011 2.4E-07 34.3 3.9 30 108-138 1-30 (31)
135 PF04078 Rcd1: Cell differenti 96.1 0.18 3.9E-06 44.3 12.9 184 38-227 9-221 (262)
136 cd03567 VHS_GGA VHS domain fam 96.1 0.13 2.8E-06 41.1 11.2 72 66-137 39-116 (139)
137 KOG2259|consensus 96.1 0.027 5.8E-07 55.0 8.5 150 58-228 366-515 (823)
138 KOG1967|consensus 96.1 0.096 2.1E-06 53.1 12.5 154 68-228 818-986 (1030)
139 cd03561 VHS VHS domain family; 96.1 0.14 3E-06 40.5 11.3 73 66-138 38-113 (133)
140 PF08167 RIX1: rRNA processing 96.1 0.077 1.7E-06 43.7 10.1 111 67-182 27-146 (165)
141 PF04869 Uso1_p115_head: Uso1 96.1 0.32 7E-06 44.2 14.9 167 78-247 51-251 (312)
142 PF00790 VHS: VHS domain; Int 96.0 0.11 2.3E-06 41.5 10.5 107 24-136 6-117 (140)
143 KOG0567|consensus 96.0 0.33 7.2E-06 42.7 14.1 138 65-226 67-251 (289)
144 COG5181 HSH155 U2 snRNP splice 96.0 0.14 3.1E-06 49.9 12.9 155 64-227 687-873 (975)
145 PF01347 Vitellogenin_N: Lipop 96.0 0.44 9.5E-06 47.3 17.1 218 3-268 378-617 (618)
146 KOG1248|consensus 96.0 0.89 1.9E-05 47.5 18.8 214 5-227 674-901 (1176)
147 KOG4535|consensus 95.9 0.028 6E-07 53.2 7.5 147 68-221 436-600 (728)
148 KOG0213|consensus 95.9 0.14 3E-06 51.0 12.2 180 39-227 856-1068(1172)
149 PF13251 DUF4042: Domain of un 95.9 0.1 2.2E-06 43.7 9.9 144 80-227 1-177 (182)
150 KOG0301|consensus 95.8 0.74 1.6E-05 45.4 16.8 157 38-203 558-727 (745)
151 PF06371 Drf_GBD: Diaphanous G 95.8 0.028 6E-07 46.8 6.5 92 43-136 83-186 (187)
152 KOG3036|consensus 95.8 1.2 2.6E-05 39.0 16.7 185 39-226 39-249 (293)
153 PF08324 PUL: PUL domain; Int 95.7 0.19 4.2E-06 44.4 11.9 196 1-199 36-251 (268)
154 smart00638 LPD_N Lipoprotein N 95.7 0.97 2.1E-05 44.5 17.9 185 4-219 341-540 (574)
155 PF04869 Uso1_p115_head: Uso1 95.7 0.64 1.4E-05 42.3 15.2 150 121-273 51-231 (312)
156 COG5215 KAP95 Karyopherin (imp 95.7 1.9 4.2E-05 42.0 18.7 187 38-228 148-361 (858)
157 KOG4653|consensus 95.7 0.59 1.3E-05 47.3 15.8 192 21-227 726-921 (982)
158 KOG3036|consensus 95.7 1.3 2.9E-05 38.6 16.2 169 19-189 68-256 (293)
159 KOG1248|consensus 95.6 2.1 4.5E-05 44.9 20.0 167 5-178 590-766 (1176)
160 cd03568 VHS_STAM VHS domain fa 95.6 0.18 3.9E-06 40.5 10.3 73 66-138 38-111 (144)
161 KOG0212|consensus 95.6 0.71 1.5E-05 44.7 15.6 173 48-227 232-409 (675)
162 KOG1242|consensus 95.6 2.4 5.2E-05 41.4 19.1 156 67-233 136-292 (569)
163 KOG2025|consensus 95.5 1.3 2.9E-05 44.1 17.4 121 7-134 64-190 (892)
164 KOG2999|consensus 95.5 0.39 8.4E-06 46.4 13.4 158 67-229 85-247 (713)
165 COG5215 KAP95 Karyopherin (imp 95.5 0.51 1.1E-05 45.9 14.1 155 72-231 373-536 (858)
166 KOG1058|consensus 95.5 0.92 2E-05 45.4 16.1 29 67-95 136-164 (948)
167 KOG2274|consensus 95.4 1.9 4.1E-05 44.0 18.3 150 3-153 544-705 (1005)
168 KOG1789|consensus 95.4 0.36 7.9E-06 50.0 13.3 142 80-226 1740-1885(2235)
169 PF04078 Rcd1: Cell differenti 95.4 1.8 3.9E-05 38.2 17.3 166 21-189 41-227 (262)
170 KOG1020|consensus 95.4 1 2.2E-05 48.3 16.9 155 18-184 762-926 (1692)
171 KOG1991|consensus 95.3 0.48 1E-05 48.5 14.0 112 65-184 410-537 (1010)
172 KOG2611|consensus 95.1 2.1 4.6E-05 40.9 16.6 196 70-277 16-230 (698)
173 PF08569 Mo25: Mo25-like; Int 95.0 1.3 2.8E-05 40.8 15.1 153 27-180 126-284 (335)
174 PF06025 DUF913: Domain of Unk 95.0 0.72 1.6E-05 43.2 13.7 141 59-200 99-255 (379)
175 PF14668 RICTOR_V: Rapamycin-i 95.0 0.14 3E-06 36.2 6.8 67 125-193 4-71 (73)
176 KOG4151|consensus 94.8 0.82 1.8E-05 45.8 13.8 159 60-227 499-659 (748)
177 KOG2137|consensus 94.7 0.71 1.5E-05 45.9 13.1 136 61-204 385-520 (700)
178 PF04063 DUF383: Domain of unk 94.7 0.62 1.4E-05 39.3 11.1 130 74-204 4-159 (192)
179 KOG1061|consensus 94.6 0.3 6.5E-06 48.7 10.3 70 67-140 123-192 (734)
180 KOG1820|consensus 94.6 1.2 2.6E-05 45.6 14.8 173 39-227 268-446 (815)
181 KOG1058|consensus 94.4 3.3 7.1E-05 41.7 16.7 147 67-228 245-392 (948)
182 KOG1824|consensus 94.4 0.78 1.7E-05 47.0 12.6 154 66-228 48-207 (1233)
183 PF13764 E3_UbLigase_R4: E3 ub 94.3 0.94 2E-05 46.3 13.4 132 58-190 110-269 (802)
184 KOG1243|consensus 94.3 1 2.3E-05 44.6 13.2 210 3-227 269-518 (690)
185 PF11701 UNC45-central: Myosin 94.2 0.61 1.3E-05 38.0 9.9 105 70-176 48-156 (157)
186 PF06025 DUF913: Domain of Unk 94.2 3.4 7.4E-05 38.7 16.0 184 44-228 4-236 (379)
187 KOG1240|consensus 93.9 1.7 3.6E-05 45.8 14.1 97 38-137 437-537 (1431)
188 KOG1832|consensus 93.9 0.21 4.7E-06 50.6 7.6 147 56-204 592-799 (1516)
189 KOG4151|consensus 93.9 0.76 1.6E-05 46.1 11.4 178 41-223 559-740 (748)
190 COG5240 SEC21 Vesicle coat com 93.9 7.1 0.00015 38.3 18.2 31 67-97 305-335 (898)
191 COG5231 VMA13 Vacuolar H+-ATPa 93.8 3 6.5E-05 37.9 14.0 153 68-224 238-428 (432)
192 KOG1943|consensus 93.8 0.82 1.8E-05 47.3 11.6 151 66-225 342-501 (1133)
193 PF12830 Nipped-B_C: Sister ch 93.8 3 6.4E-05 34.9 13.5 69 67-144 10-81 (187)
194 COG5240 SEC21 Vesicle coat com 93.7 7.4 0.00016 38.2 17.2 72 154-233 268-341 (898)
195 PF05918 API5: Apoptosis inhib 93.7 2.4 5.3E-05 41.5 14.3 133 24-175 22-158 (556)
196 KOG2274|consensus 93.7 9.7 0.00021 39.2 19.3 148 39-189 545-699 (1005)
197 KOG2973|consensus 93.6 0.37 8E-06 43.4 8.0 107 110-227 6-114 (353)
198 PF10363 DUF2435: Protein of u 93.6 0.35 7.7E-06 35.7 6.8 72 67-141 5-76 (92)
199 PF11865 DUF3385: Domain of un 93.6 0.67 1.5E-05 37.9 9.1 142 67-223 12-156 (160)
200 PF14225 MOR2-PAG1_C: Cell mor 93.5 1.7 3.6E-05 38.6 12.1 146 61-226 107-256 (262)
201 KOG2956|consensus 93.4 7.4 0.00016 37.1 18.7 192 18-225 282-478 (516)
202 KOG2933|consensus 93.4 0.9 2E-05 40.9 10.1 144 18-178 84-233 (334)
203 KOG2062|consensus 93.2 1.1 2.5E-05 44.7 11.1 136 63-226 516-655 (929)
204 KOG4535|consensus 93.1 0.33 7.1E-06 46.2 7.1 105 73-179 399-513 (728)
205 PF05004 IFRD: Interferon-rela 93.0 6.9 0.00015 35.5 16.5 137 39-179 101-257 (309)
206 KOG1060|consensus 92.8 5 0.00011 40.7 15.0 138 67-223 394-532 (968)
207 COG5116 RPN2 26S proteasome re 92.8 0.64 1.4E-05 45.2 8.6 105 60-180 543-651 (926)
208 KOG1240|consensus 92.7 11 0.00024 40.0 17.8 209 18-233 454-734 (1431)
209 KOG1077|consensus 92.7 2.3 5E-05 42.5 12.4 151 66-235 75-227 (938)
210 cd03561 VHS VHS domain family; 92.7 1.1 2.5E-05 35.3 8.9 96 126-226 18-114 (133)
211 KOG1077|consensus 92.5 3.4 7.4E-05 41.3 13.3 174 41-226 226-435 (938)
212 PF12463 DUF3689: Protein of u 92.5 2.6 5.7E-05 38.1 11.8 134 99-232 1-181 (303)
213 PF12719 Cnd3: Nuclear condens 92.4 1.4 3E-05 39.7 10.2 111 107-226 26-145 (298)
214 COG5218 YCG1 Chromosome conden 92.4 5.3 0.00012 39.3 14.2 129 38-174 64-194 (885)
215 cd03569 VHS_Hrs_Vps27p VHS dom 92.3 2.8 6E-05 33.6 10.7 93 127-226 23-116 (142)
216 COG5098 Chromosome condensatio 92.2 2.8 6E-05 41.9 12.2 145 65-228 891-1041(1128)
217 PF08216 CTNNBL: Catenin-beta- 92.2 0.3 6.6E-06 37.1 4.6 46 39-84 61-106 (108)
218 KOG2611|consensus 92.1 11 0.00025 36.1 15.8 120 37-160 24-162 (698)
219 COG5209 RCD1 Uncharacterized p 92.1 4.2 9.2E-05 35.2 11.9 148 39-188 115-276 (315)
220 PF01347 Vitellogenin_N: Lipop 92.0 1.4 3.1E-05 43.7 10.7 180 7-217 416-615 (618)
221 COG5116 RPN2 26S proteasome re 92.0 1.5 3.3E-05 42.7 10.0 133 69-227 520-653 (926)
222 cd03568 VHS_STAM VHS domain fa 91.8 1.4 3.1E-05 35.3 8.5 74 151-226 38-112 (144)
223 smart00638 LPD_N Lipoprotein N 91.4 3.4 7.3E-05 40.7 12.5 182 4-216 375-570 (574)
224 KOG1967|consensus 91.4 0.93 2E-05 46.3 8.3 204 6-218 798-1018(1030)
225 PF13251 DUF4042: Domain of un 91.4 3.5 7.5E-05 34.5 10.6 114 66-182 40-177 (182)
226 COG5231 VMA13 Vacuolar H+-ATPa 91.3 0.28 6.1E-06 44.4 4.2 123 57-179 271-428 (432)
227 COG5218 YCG1 Chromosome conden 91.3 13 0.00027 36.8 15.4 139 66-217 50-192 (885)
228 KOG2032|consensus 91.2 3.5 7.7E-05 39.4 11.5 117 60-179 249-371 (533)
229 KOG0413|consensus 91.1 1.7 3.6E-05 44.9 9.7 128 79-226 945-1075(1529)
230 smart00288 VHS Domain present 90.9 2.1 4.6E-05 33.8 8.5 92 127-225 19-112 (133)
231 KOG1020|consensus 90.8 12 0.00027 40.6 15.9 170 82-277 794-965 (1692)
232 KOG0915|consensus 90.7 4.3 9.3E-05 43.9 12.6 154 66-229 999-1165(1702)
233 cd03567 VHS_GGA VHS domain fam 90.7 2.4 5.3E-05 33.8 8.7 94 128-226 21-118 (139)
234 PF06685 DUF1186: Protein of u 90.6 11 0.00024 33.1 13.6 126 62-196 70-201 (249)
235 PF01365 RYDR_ITPR: RIH domain 90.6 2.1 4.6E-05 36.3 9.0 147 21-180 3-170 (207)
236 KOG2062|consensus 90.4 1.4 3.1E-05 44.0 8.4 96 67-178 556-652 (929)
237 KOG3665|consensus 90.2 2.7 5.9E-05 42.6 10.5 150 53-203 501-678 (699)
238 PF12397 U3snoRNP10: U3 small 90.1 3.9 8.5E-05 31.4 9.4 88 67-159 8-103 (121)
239 PF00790 VHS: VHS domain; Int 90.0 5 0.00011 31.8 10.1 95 126-226 23-120 (140)
240 PF07814 WAPL: Wings apart-lik 90.0 10 0.00023 35.1 13.7 95 18-117 20-116 (361)
241 KOG4653|consensus 89.8 19 0.00042 36.9 15.8 113 65-181 802-920 (982)
242 PF12530 DUF3730: Protein of u 89.7 11 0.00024 32.7 12.8 140 67-226 2-153 (234)
243 COG5098 Chromosome condensatio 89.6 3 6.4E-05 41.7 9.8 109 67-182 301-418 (1128)
244 PF14726 RTTN_N: Rotatin, an a 89.5 3.9 8.5E-05 30.5 8.4 93 80-174 2-95 (98)
245 PF08167 RIX1: rRNA processing 89.4 4.9 0.00011 32.9 9.9 115 108-230 26-149 (165)
246 cd03572 ENTH_epsin_related ENT 88.7 2.8 6E-05 32.7 7.4 76 193-275 39-121 (122)
247 cd03565 VHS_Tom1 VHS domain fa 88.5 11 0.00024 30.0 11.4 72 66-137 39-115 (141)
248 COG5209 RCD1 Uncharacterized p 88.4 16 0.00035 31.7 14.2 185 40-228 61-271 (315)
249 PF12031 DUF3518: Domain of un 88.2 1.4 3.1E-05 38.3 6.0 80 39-118 139-227 (257)
250 PF08324 PUL: PUL domain; Int 87.9 15 0.00032 32.2 12.7 169 67-245 65-250 (268)
251 PF08506 Cse1: Cse1; InterPro 87.8 20 0.00043 33.5 13.8 143 18-174 209-370 (370)
252 PF01365 RYDR_ITPR: RIH domain 87.6 1.8 3.8E-05 36.8 6.3 123 97-227 33-172 (207)
253 KOG0414|consensus 87.3 3.1 6.7E-05 43.7 8.7 113 67-183 314-432 (1251)
254 PF10521 DUF2454: Protein of u 87.3 14 0.00029 33.1 12.1 70 67-136 121-202 (282)
255 cd00197 VHS_ENTH_ANTH VHS, ENT 87.0 9.1 0.0002 29.0 9.5 93 126-223 18-114 (115)
256 PF10363 DUF2435: Protein of u 86.8 3 6.6E-05 30.7 6.4 71 153-228 6-76 (92)
257 KOG3665|consensus 86.6 33 0.00071 34.9 15.5 95 131-228 494-591 (699)
258 PLN03205 ATR interacting prote 86.1 8 0.00017 36.3 9.9 163 67-231 325-523 (652)
259 KOG1243|consensus 85.8 13 0.00029 37.1 11.8 130 37-179 267-398 (690)
260 COG5656 SXM1 Importin, protein 85.8 40 0.00087 34.3 15.0 114 64-181 407-530 (970)
261 PF14500 MMS19_N: Dos2-interac 85.3 14 0.00031 32.6 11.1 146 70-226 4-155 (262)
262 KOG1566|consensus 85.0 30 0.00065 31.5 21.0 203 21-226 16-288 (342)
263 KOG2073|consensus 84.7 8.6 0.00019 39.6 10.3 72 56-138 148-221 (838)
264 PF12830 Nipped-B_C: Sister ch 84.4 4.1 9E-05 34.0 6.9 67 152-229 10-79 (187)
265 KOG1943|consensus 83.7 48 0.001 35.0 15.0 142 76-226 555-707 (1133)
266 PF04063 DUF383: Domain of unk 83.4 25 0.00055 29.6 11.2 130 122-259 9-164 (192)
267 cd00197 VHS_ENTH_ANTH VHS, ENT 83.4 17 0.00037 27.5 10.6 70 66-135 38-113 (115)
268 PF10521 DUF2454: Protein of u 83.1 14 0.00031 32.9 10.2 70 108-178 120-202 (282)
269 PF01603 B56: Protein phosphat 82.6 5.6 0.00012 37.6 7.8 97 43-140 109-207 (409)
270 KOG2676|consensus 82.5 1.4 3E-05 40.5 3.4 64 84-147 375-439 (478)
271 PF04821 TIMELESS: Timeless pr 82.3 28 0.0006 30.9 11.7 168 39-227 9-211 (266)
272 KOG2199|consensus 82.3 11 0.00023 35.2 9.0 99 25-128 10-109 (462)
273 KOG1087|consensus 82.0 10 0.00022 36.5 9.2 69 66-134 39-109 (470)
274 PF04388 Hamartin: Hamartin pr 81.5 26 0.00056 35.5 12.3 82 77-159 80-161 (668)
275 PF12530 DUF3730: Protein of u 81.2 35 0.00077 29.5 14.7 127 38-180 15-152 (234)
276 KOG2032|consensus 81.0 15 0.00033 35.3 9.7 116 105-226 252-373 (533)
277 PF04499 SAPS: SIT4 phosphatas 80.9 7.9 0.00017 37.4 8.2 45 96-140 51-95 (475)
278 cd03572 ENTH_epsin_related ENT 80.8 25 0.00053 27.4 9.5 94 126-224 19-119 (122)
279 PF01603 B56: Protein phosphat 80.3 54 0.0012 31.0 17.3 217 2-234 146-380 (409)
280 KOG1822|consensus 80.1 8.6 0.00019 42.6 8.6 112 66-180 877-989 (2067)
281 KOG0211|consensus 79.9 51 0.0011 33.8 13.7 131 39-177 213-343 (759)
282 PF08389 Xpo1: Exportin 1-like 78.8 10 0.00022 29.5 7.0 84 2-89 65-148 (148)
283 PF08506 Cse1: Cse1; InterPro 78.6 41 0.00089 31.4 11.9 120 7-132 233-370 (370)
284 KOG1078|consensus 78.4 82 0.0018 32.3 14.2 155 67-229 247-426 (865)
285 PF12031 DUF3518: Domain of un 78.4 7 0.00015 34.2 6.2 84 79-163 138-229 (257)
286 KOG1820|consensus 77.9 67 0.0015 33.3 14.0 144 71-227 259-403 (815)
287 KOG2038|consensus 77.8 46 0.001 34.0 12.2 76 108-189 305-380 (988)
288 KOG2199|consensus 76.4 37 0.0008 31.8 10.5 93 126-226 26-120 (462)
289 KOG2137|consensus 76.3 68 0.0015 32.4 13.0 138 18-163 381-521 (700)
290 PF04388 Hamartin: Hamartin pr 76.1 25 0.00054 35.6 10.3 59 122-180 82-141 (668)
291 PF06685 DUF1186: Protein of u 76.1 55 0.0012 28.8 13.2 100 76-200 53-161 (249)
292 PF07814 WAPL: Wings apart-lik 75.9 68 0.0015 29.8 13.8 84 76-160 33-116 (361)
293 PF14663 RasGEF_N_2: Rapamycin 75.2 7.9 0.00017 29.7 5.2 39 66-105 9-47 (115)
294 PF10257 RAI16-like: Retinoic 75.1 63 0.0014 29.9 12.1 135 61-198 5-178 (353)
295 PF12463 DUF3689: Protein of u 74.5 68 0.0015 29.1 11.7 97 64-160 94-199 (303)
296 PF11791 Aconitase_B_N: Aconit 74.1 9.3 0.0002 30.8 5.4 104 21-140 21-126 (154)
297 cd03565 VHS_Tom1 VHS domain fa 73.7 44 0.00095 26.6 11.4 76 151-226 39-117 (141)
298 KOG0413|consensus 73.6 16 0.00036 38.1 8.1 109 108-224 577-685 (1529)
299 PF14500 MMS19_N: Dos2-interac 73.1 15 0.00034 32.4 7.2 68 155-226 4-71 (262)
300 KOG0211|consensus 72.6 58 0.0013 33.5 11.9 147 68-227 162-308 (759)
301 KOG1078|consensus 72.6 1.2E+02 0.0026 31.1 14.7 74 152-233 247-320 (865)
302 PF09758 FPL: Uncharacterised 72.5 11 0.00025 30.3 5.6 127 94-223 13-148 (149)
303 PF08454 RIH_assoc: RyR and IP 72.4 40 0.00087 25.6 8.8 99 4-118 5-107 (109)
304 KOG2038|consensus 72.1 20 0.00043 36.5 8.2 68 153-228 307-374 (988)
305 PF05327 RRN3: RNA polymerase 71.7 1.1E+02 0.0024 30.3 15.8 182 4-200 11-213 (563)
306 KOG0567|consensus 69.7 13 0.00028 33.0 5.7 75 61-148 180-258 (289)
307 PF06012 DUF908: Domain of Unk 69.3 31 0.00066 31.6 8.5 63 80-143 237-303 (329)
308 KOG2676|consensus 69.2 5 0.00011 37.0 3.2 63 128-190 376-440 (478)
309 PRK14707 hypothetical protein; 68.8 2.3E+02 0.005 32.9 16.7 148 75-227 300-448 (2710)
310 PF03130 HEAT_PBS: PBS lyase H 67.9 2.7 5.9E-05 23.3 0.8 26 81-117 1-26 (27)
311 smart00087 PTH Parathyroid hor 67.1 4.3 9.4E-05 24.3 1.6 15 2-16 19-33 (36)
312 PF11707 Npa1: Ribosome 60S bi 67.0 1E+02 0.0022 28.1 15.3 134 77-226 38-190 (330)
313 KOG2085|consensus 66.5 49 0.0011 31.3 9.0 137 84-235 281-425 (457)
314 KOG2956|consensus 65.7 1.3E+02 0.0029 29.0 15.2 144 24-179 331-477 (516)
315 PF13001 Ecm29: Proteasome sta 65.7 18 0.00039 35.2 6.6 112 67-180 321-444 (501)
316 cd08050 TAF6 TATA Binding Prot 65.4 1E+02 0.0023 28.3 11.3 102 78-180 173-298 (343)
317 PF09324 DUF1981: Domain of un 64.8 28 0.00061 25.1 5.9 49 107-160 17-65 (86)
318 TIGR00207 fliG flagellar motor 64.0 1.2E+02 0.0026 27.9 16.6 69 148-219 197-283 (338)
319 cd08050 TAF6 TATA Binding Prot 63.3 71 0.0015 29.4 9.7 130 1-135 172-338 (343)
320 KOG2549|consensus 62.8 1.3E+02 0.0028 29.6 11.4 121 72-204 214-351 (576)
321 PF12054 DUF3535: Domain of un 62.6 1.5E+02 0.0032 28.4 12.2 74 39-117 102-178 (441)
322 KOG4464|consensus 62.3 1.1E+02 0.0024 29.1 10.5 83 77-161 109-198 (532)
323 KOG1993|consensus 62.3 2E+02 0.0043 29.8 13.3 179 39-225 462-645 (978)
324 KOG0301|consensus 61.7 1.9E+02 0.004 29.3 18.3 149 74-230 553-710 (745)
325 PF10257 RAI16-like: Retinoic 61.7 1.4E+02 0.0029 27.7 12.0 120 100-226 2-157 (353)
326 smart00802 UME Domain in UVSB 61.6 38 0.00083 25.6 6.3 71 23-97 12-86 (107)
327 PF06012 DUF908: Domain of Unk 61.2 41 0.00089 30.8 7.7 77 39-115 237-324 (329)
328 KOG1949|consensus 61.0 76 0.0016 32.3 9.7 134 39-178 189-330 (1005)
329 PF11864 DUF3384: Domain of un 60.4 1.6E+02 0.0035 28.2 15.2 102 9-117 14-117 (464)
330 KOG0392|consensus 60.2 30 0.00065 37.2 7.1 108 66-178 817-924 (1549)
331 PF07923 N1221: N1221-like pro 60.1 20 0.00044 32.2 5.4 56 63-118 58-127 (293)
332 KOG0915|consensus 59.4 43 0.00094 36.7 8.2 99 125-228 974-1072(1702)
333 COG5656 SXM1 Importin, protein 58.9 2.2E+02 0.0048 29.3 16.4 69 67-139 462-530 (970)
334 PF13001 Ecm29: Proteasome sta 58.6 58 0.0013 31.7 8.6 82 57-141 362-447 (501)
335 COG4008 Predicted metal-bindin 58.5 16 0.00034 28.5 3.7 49 1-49 91-139 (153)
336 smart00567 EZ_HEAT E-Z type HE 58.5 16 0.00035 20.3 3.0 20 123-144 2-21 (30)
337 KOG1525|consensus 58.4 29 0.00062 37.6 6.9 149 64-225 258-406 (1266)
338 PF14663 RasGEF_N_2: Rapamycin 58.4 30 0.00065 26.4 5.4 40 151-191 9-48 (115)
339 PF11935 DUF3453: Domain of un 57.7 74 0.0016 27.6 8.4 90 57-146 34-154 (239)
340 PF10274 ParcG: Parkin co-regu 56.7 1.2E+02 0.0026 25.4 10.4 80 107-188 38-118 (183)
341 KOG1832|consensus 56.4 81 0.0017 33.0 9.1 153 42-203 330-491 (1516)
342 PF08064 UME: UME (NUC010) dom 56.3 76 0.0016 23.8 7.3 70 24-97 13-86 (107)
343 PF04499 SAPS: SIT4 phosphatas 54.1 1.7E+02 0.0036 28.4 10.8 114 107-226 21-150 (475)
344 PF09324 DUF1981: Domain of un 53.9 60 0.0013 23.3 6.1 61 67-132 19-83 (86)
345 PF01465 GRIP: GRIP domain; I 53.8 35 0.00076 21.5 4.3 35 69-103 11-45 (46)
346 KOG2933|consensus 53.4 1.7E+02 0.0037 26.7 9.9 138 67-221 90-231 (334)
347 PF11894 DUF3414: Protein of u 53.1 63 0.0014 36.5 8.8 57 80-136 579-638 (1691)
348 PF12783 Sec7_N: Guanine nucle 52.6 1.2E+02 0.0026 24.4 10.3 107 39-147 37-156 (168)
349 cd00183 TFIIS_I N-terminal dom 51.8 81 0.0017 22.1 6.6 66 20-90 3-69 (76)
350 PF10274 ParcG: Parkin co-regu 51.5 1.4E+02 0.0031 24.9 10.5 74 150-227 38-112 (183)
351 PF08713 DNA_alkylation: DNA a 51.4 31 0.00067 28.8 5.0 77 67-151 122-198 (213)
352 KOG3377|consensus 51.2 51 0.0011 26.2 5.6 109 1-117 7-136 (143)
353 PRK14707 hypothetical protein; 51.0 4.7E+02 0.01 30.6 16.5 176 43-224 310-487 (2710)
354 PF08064 UME: UME (NUC010) dom 50.1 1.1E+02 0.0023 23.0 8.3 69 107-180 11-84 (107)
355 KOG2149|consensus 50.1 1.5E+02 0.0032 27.9 9.3 116 108-230 59-176 (393)
356 PF04510 DUF577: Family of unk 49.7 1.5E+02 0.0032 24.6 10.7 88 68-162 6-96 (174)
357 KOG3533|consensus 49.3 1.6E+02 0.0035 32.4 10.2 136 58-204 1228-1387(2706)
358 cd03562 CID CID (CTD-Interacti 49.0 1.1E+02 0.0024 22.9 8.4 88 77-175 17-104 (114)
359 PF07923 N1221: N1221-like pro 48.9 41 0.00089 30.2 5.5 53 152-204 62-128 (293)
360 cd06561 AlkD_like A new struct 48.6 89 0.0019 25.6 7.3 78 69-153 109-186 (197)
361 PF08216 CTNNBL: Catenin-beta- 48.3 23 0.0005 26.9 3.2 30 179-211 74-103 (108)
362 PF09450 DUF2019: Domain of un 48.1 21 0.00045 27.1 2.9 30 61-90 41-72 (106)
363 PF14726 RTTN_N: Rotatin, an a 47.5 1.2E+02 0.0025 22.7 8.7 86 39-126 2-89 (98)
364 KOG4464|consensus 45.3 2.8E+02 0.0061 26.5 13.2 82 120-204 109-199 (532)
365 PF12055 DUF3536: Domain of un 44.9 2.3E+02 0.0051 25.4 10.1 67 6-72 13-106 (285)
366 smart00802 UME Domain in UVSB 44.6 1.4E+02 0.003 22.6 7.6 70 106-180 10-84 (107)
367 KOG1788|consensus 44.4 59 0.0013 34.8 6.2 80 143-222 901-980 (2799)
368 PF08389 Xpo1: Exportin 1-like 43.6 79 0.0017 24.3 5.9 61 152-219 84-148 (148)
369 PF11894 DUF3414: Protein of u 43.3 4.8E+02 0.01 29.7 13.7 142 84-227 451-642 (1691)
370 KOG1949|consensus 43.1 3.9E+02 0.0085 27.5 11.8 146 68-225 177-332 (1005)
371 PF09758 FPL: Uncharacterised 41.7 55 0.0012 26.4 4.6 88 137-226 13-103 (149)
372 PF12074 DUF3554: Domain of un 41.5 83 0.0018 28.7 6.5 76 38-118 176-255 (339)
373 KOG1087|consensus 40.3 99 0.0021 29.9 6.8 71 152-223 40-111 (470)
374 PF12231 Rif1_N: Rap1-interact 40.3 3.1E+02 0.0067 25.5 17.1 136 78-223 59-203 (372)
375 PLN03076 ARF guanine nucleotid 39.7 3.6E+02 0.0078 30.9 11.7 100 76-180 1148-1254(1780)
376 PF01417 ENTH: ENTH domain; I 39.7 25 0.00055 27.1 2.4 76 193-273 40-121 (125)
377 PF07765 KIP1: KIP1-like prote 39.3 56 0.0012 23.0 3.8 32 2-37 9-40 (74)
378 KOG0891|consensus 39.2 4.6E+02 0.01 30.9 12.5 150 70-226 570-721 (2341)
379 smart00755 Grip golgin-97, Ran 38.9 92 0.002 19.7 4.4 35 69-104 10-44 (46)
380 KOG4524|consensus 38.7 1.5E+02 0.0032 31.2 8.1 94 107-203 803-900 (1014)
381 PF07539 DRIM: Down-regulated 37.5 42 0.00092 26.7 3.4 89 57-160 8-98 (141)
382 PF12030 DUF3517: Domain of un 37.3 3.4E+02 0.0073 25.1 14.0 61 148-223 203-266 (337)
383 PF08767 CRM1_C: CRM1 C termin 36.7 3.2E+02 0.007 24.8 9.5 143 80-228 42-198 (319)
384 PF08620 RPAP1_C: RPAP1-like, 35.1 55 0.0012 23.0 3.2 30 66-95 40-69 (73)
385 PF12074 DUF3554: Domain of un 35.0 3.5E+02 0.0075 24.5 14.3 216 6-229 4-240 (339)
386 PF01279 Parathyroid: Parathyr 34.9 31 0.00066 25.8 2.0 15 3-17 21-35 (100)
387 PF14225 MOR2-PAG1_C: Cell mor 34.7 3.3E+02 0.0071 24.1 13.2 207 38-268 21-253 (262)
388 KOG4524|consensus 34.6 3.1E+02 0.0067 29.0 9.5 99 19-118 796-900 (1014)
389 PF12612 TFCD_C: Tubulin foldi 34.5 2.7E+02 0.0058 23.1 9.5 60 161-226 98-160 (193)
390 PF14980 TIP39: TIP39 peptide 34.5 36 0.00078 21.7 1.9 15 3-17 33-47 (51)
391 PF07571 DUF1546: Protein of u 34.4 1.5E+02 0.0032 21.6 5.6 71 162-237 18-88 (92)
392 PF14631 FancD2: Fanconi anaem 34.3 2.8E+02 0.0062 30.9 9.9 68 73-146 443-511 (1426)
393 KOG0889|consensus 32.3 6.2E+02 0.014 31.0 12.1 161 63-227 1124-1309(3550)
394 PRK05408 oxidative damage prot 31.5 43 0.00094 24.5 2.3 17 1-17 58-74 (90)
395 PF08713 DNA_alkylation: DNA a 30.8 3.1E+02 0.0067 22.7 15.8 77 108-192 121-197 (213)
396 KOG2549|consensus 30.7 5.4E+02 0.012 25.5 12.7 131 1-135 201-368 (576)
397 PF12765 Cohesin_HEAT: HEAT re 30.6 50 0.0011 20.3 2.2 40 88-131 2-41 (42)
398 PF11640 TAN: Telomere-length 29.9 1.9E+02 0.004 23.2 6.1 117 109-228 6-144 (155)
399 KOG1788|consensus 29.8 7.3E+02 0.016 27.2 11.2 147 107-263 466-616 (2799)
400 PF12783 Sec7_N: Guanine nucle 29.8 2.9E+02 0.0064 22.1 12.4 108 79-188 36-155 (168)
401 PRK05686 fliG flagellar motor 29.5 4.4E+02 0.0096 24.1 16.1 69 148-219 200-286 (339)
402 COG1536 FliG Flagellar motor s 29.2 4.6E+02 0.01 24.2 18.2 69 148-219 200-286 (339)
403 KOG0803|consensus 29.1 8.3E+02 0.018 27.1 16.1 72 22-95 41-113 (1312)
404 PF12726 SEN1_N: SEN1 N termin 29.1 5.6E+02 0.012 26.2 10.7 68 124-191 497-567 (727)
405 PF07208 DUF1414: Protein of u 29.1 67 0.0015 20.2 2.5 13 83-95 6-18 (44)
406 KOG1086|consensus 28.6 5.4E+02 0.012 24.8 12.7 148 125-278 59-270 (594)
407 PF04362 Iron_traffic: Bacteri 28.5 56 0.0012 23.9 2.4 17 1-17 58-74 (88)
408 PF06367 Drf_FH3: Diaphanous F 28.3 2.2E+02 0.0048 23.5 6.5 63 149-214 20-91 (197)
409 PF07571 DUF1546: Protein of u 28.3 2.4E+02 0.0051 20.5 7.6 62 77-146 18-84 (92)
410 PF12231 Rif1_N: Rap1-interact 28.2 4.9E+02 0.011 24.1 17.3 152 67-223 177-351 (372)
411 KOG1791|consensus 27.1 5.9E+02 0.013 28.7 10.3 187 58-249 1431-1638(1758)
412 PF13925 Katanin_con80: con80 26.7 3.5E+02 0.0075 21.9 11.3 79 148-231 26-105 (164)
413 PF12397 U3snoRNP10: U3 small 26.3 2.9E+02 0.0062 20.8 10.4 68 108-181 7-76 (121)
414 PF11865 DUF3385: Domain of un 25.8 3.6E+02 0.0077 21.8 9.6 39 108-146 11-49 (160)
415 PF07023 DUF1315: Protein of u 25.7 1.2E+02 0.0026 22.4 3.7 42 10-51 2-46 (93)
416 PF07315 DUF1462: Protein of u 25.3 43 0.00094 24.5 1.4 15 2-16 18-32 (93)
417 PF12612 TFCD_C: Tubulin foldi 25.3 3.9E+02 0.0085 22.1 8.2 61 161-226 18-99 (193)
418 KOG1992|consensus 25.0 8.2E+02 0.018 25.7 15.0 142 67-226 4-157 (960)
419 PF03752 ALF: Short repeats of 25.0 1.8E+02 0.0038 18.0 4.1 35 70-107 4-38 (43)
420 PRK07194 fliG flagellar motor 25.0 5.4E+02 0.012 23.6 15.6 13 149-161 196-208 (334)
421 PF11864 DUF3384: Domain of un 24.4 6.3E+02 0.014 24.2 17.0 30 165-201 230-259 (464)
422 PF12054 DUF3535: Domain of un 23.8 2.3E+02 0.005 27.1 6.4 100 122-228 101-201 (441)
423 KOG2175|consensus 23.6 4.1E+02 0.009 25.6 7.8 104 15-118 154-271 (458)
424 COG5095 TAF6 Transcription ini 23.3 5.9E+02 0.013 23.4 9.5 76 108-184 231-321 (450)
425 KOG0889|consensus 23.1 7.4E+02 0.016 30.5 10.7 115 22-140 5-129 (3550)
426 COG5537 IRR1 Cohesin [Cell div 22.7 5.6E+02 0.012 25.8 8.6 100 119-225 286-387 (740)
427 KOG1992|consensus 22.6 9.1E+02 0.02 25.4 19.4 150 80-232 262-443 (960)
428 COG1992 Uncharacterized conser 22.6 13 0.00029 30.9 -1.9 153 21-176 7-179 (181)
429 cd03562 CID CID (CTD-Interacti 21.6 3.4E+02 0.0074 20.1 6.5 87 120-219 17-103 (114)
430 PF14631 FancD2: Fanconi anaem 21.6 5.3E+02 0.011 28.9 9.2 70 157-233 442-511 (1426)
431 TIGR00117 acnB aconitate hydra 21.5 3.8E+02 0.0083 28.0 7.6 101 21-136 24-125 (844)
432 PF13925 Katanin_con80: con80 21.1 4.5E+02 0.0097 21.2 10.0 89 57-148 20-109 (164)
433 KOG3300|consensus 21.1 77 0.0017 24.9 2.1 23 3-26 81-103 (146)
434 PRK15375 pathogenicity island 20.7 3E+02 0.0066 27.0 6.4 123 9-135 171-307 (535)
435 PF10228 DUF2228: Uncharacteri 20.6 1.9E+02 0.0041 25.5 4.7 70 22-92 171-241 (253)
436 COG4837 Uncharacterized protei 20.4 70 0.0015 23.7 1.6 16 2-17 25-40 (106)
437 PF11157 DUF2937: Protein of u 20.4 4.8E+02 0.01 21.3 9.4 94 40-134 31-127 (167)
438 KOG2029|consensus 20.3 3.3E+02 0.0072 27.3 6.6 87 60-150 286-374 (697)
439 PF10112 Halogen_Hydrol: 5-bro 20.2 5E+02 0.011 21.5 7.2 103 1-105 65-185 (199)
440 PF03810 IBN_N: Importin-beta 20.1 2.5E+02 0.0054 18.8 4.5 34 106-139 13-47 (77)
No 1
>KOG2160|consensus
Probab=100.00 E-value=2.3e-39 Score=287.76 Aligned_cols=272 Identities=31% Similarity=0.393 Sum_probs=242.4
Q ss_pred HHhHHHHHHHHHHhc---CCHHHHHHHHHHHH--------hccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHH
Q psy355 3 EANRGFLLDALNSMM---VNVGAELEKIIKTL--------KENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQ 71 (285)
Q Consensus 3 ~e~~~~L~~al~~~~---~d~~~~mk~~l~~l--------~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv 71 (285)
||+|+|+.++|...+ .+.++.|+.+..++ +.++.+.++++.||++|+++|++||||++|++.||+++++
T Consensus 51 ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll 130 (342)
T KOG2160|consen 51 KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLL 130 (342)
T ss_pred ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHH
Confidence 899999999999987 55555555544433 3344567999999999999999999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc
Q psy355 72 PLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG 151 (285)
Q Consensus 72 ~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g 151 (285)
.+|+++++.+|+.|+|+||+++||||.+|+.|++.|+++.|+..|+++.+..+|.+|++|||+++|++++++..|...+|
T Consensus 131 ~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G 210 (342)
T KOG2160|consen 131 GYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG 210 (342)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHhhcc--CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355 152 FSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA 229 (285)
Q Consensus 152 i~~L~~~L~~--~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~ 229 (285)
+..|..+|++ .+.++|+||++++++|+.+.++....+...|+...+..+..+. +.++++.++.++..++..-+..
T Consensus 211 ~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l---~~~~~e~~l~~~l~~l~~~~~~ 287 (342)
T KOG2160|consen 211 YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSL---DFEVNEAALTALLSLLSELSTR 287 (342)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhcc---chhhhHHHHHHHHHHHHHHhhc
Confidence 9999999999 5799999999999999999998888888889999999999888 9999999999999888766543
Q ss_pred HhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCCch
Q psy355 230 QSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLE 278 (285)
Q Consensus 230 ~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~~~ 278 (285)
. +|..+..++.+.+++++..++.|...+.++.++..+.+++|.++...
T Consensus 288 ~-~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~~~~e~~~~~ 335 (342)
T KOG2160|consen 288 K-ELFVSLLNLEELLKSLIQIISDHAALEEERQLVNSLWEICGEVPSIL 335 (342)
T ss_pred c-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 3 46666678888888888777767788999999999999999777644
No 2
>KOG0166|consensus
Probab=100.00 E-value=9.4e-38 Score=290.99 Aligned_cols=258 Identities=15% Similarity=0.197 Sum_probs=225.4
Q ss_pred CCHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhh
Q psy355 18 VNVGAELEKIIKTLKENQD--QKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ 94 (285)
Q Consensus 18 ~d~~~~mk~~l~~l~~~~~--~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~ 94 (285)
..+++.++.++++|..--. +.+.+..|++.+.|+++. .+....+++.|++|.|+.+|.++++.++.+|+++|||+++
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence 4567999999998877663 357789999999999966 4667788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHH
Q psy355 95 NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLI 174 (285)
Q Consensus 95 nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l 174 (285)
+++.+++.++++|++|.|..+++.++...+|+.|||+||||++|++.+.++++++|.+|.|+++|+++++++|++|+|+|
T Consensus 309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaI 388 (514)
T KOG0166|consen 309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAI 388 (514)
T ss_pred ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999999999999656678999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHH--HHHHHc
Q psy355 175 ACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLN--FIKEKH 251 (285)
Q Consensus 175 ~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~l 251 (285)
+|++.+ .+++..++++.|+|+++|.+|..+ |.++...++.+|.+|++..+.....-.++...+.+..+ +.++.|
T Consensus 389 sN~ts~g~~~qi~yLv~~giI~plcdlL~~~---D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~L 465 (514)
T KOG0166|consen 389 SNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP---DVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENL 465 (514)
T ss_pred HhhcccCCHHHHHHHHHcCCchhhhhcccCC---ChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHh
Confidence 999987 678999999999999999999988 99999999999999998886433211133322222222 467899
Q ss_pred cChHhhHHHHHHHHHHHHHhcCCCCchh
Q psy355 252 AGNEVYHKELEHVNSVLTEVFEEDSLEE 279 (285)
Q Consensus 252 ~~~~e~~~~~~~~~~il~~~f~~~~~~~ 279 (285)
|. |||+++|++|++|+++||+++++++
T Consensus 466 Q~-hen~~Iy~~A~~II~~yf~~e~~~~ 492 (514)
T KOG0166|consen 466 QS-HENEEIYKKAYKIIDTYFSEEDDED 492 (514)
T ss_pred hc-cccHHHHHHHHHHHHHhcCCCcccc
Confidence 95 5999999999999999999886543
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.7e-36 Score=262.39 Aligned_cols=253 Identities=15% Similarity=0.219 Sum_probs=222.4
Q ss_pred CCHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhh
Q psy355 18 VNVGAELEKIIKTLKENQD--QKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ 94 (285)
Q Consensus 18 ~d~~~~mk~~l~~l~~~~~--~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~ 94 (285)
+.+...|.+++++|.+-.. +.+...+|++++.|+++... ....+.+.|..++|+.+|.|++..|+.+|++.+||+++
T Consensus 235 ~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT 314 (526)
T COG5064 235 PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT 314 (526)
T ss_pred CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee
Confidence 5668899999999988774 36889999999999998864 44567888988999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHH
Q psy355 95 NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLI 174 (285)
Q Consensus 95 nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l 174 (285)
+++.+++.++++|+++.+..+|++ +...+|+.|||.||||+.|+..+.+++++++.+|+|+++|++.+.++|++|||++
T Consensus 315 G~D~QTqviI~~G~L~a~~~lLs~-~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi 393 (526)
T COG5064 315 GSDDQTQVIINCGALKAFRSLLSS-PKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393 (526)
T ss_pred cCccceehheecccHHHHHHHhcC-hhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 5569999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcC---CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh-hcccCcccHHHHHH-----
Q psy355 175 ACLCTD---NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS-LCRLEPLNLKFKLN----- 245 (285)
Q Consensus 175 ~~L~~~---~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~-~~~~~~~~l~~~l~----- 245 (285)
+|++++ .|+..++++++|+|++||.+|... +.++.+.+|.++.++++.+..... ...++. ....+++
T Consensus 394 sNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~---dNkiiev~LD~~eniLk~Ge~d~~~~~~nin-~ya~~vE~Aggm 469 (526)
T COG5064 394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV---DNKIIEVALDAIENILKVGEQDRLRYGKNIN-IYAVYVEKAGGM 469 (526)
T ss_pred HhhhccccCCchHHHHHHHccchhHHHHHHhcc---CccchhhhHHHHHHHHhhhhHHHHhccCCcc-HHHHHHHhcccH
Confidence 999887 589999999999999999999998 999999999999999999964322 222221 1122333
Q ss_pred HHHHHccChHhhHHHHHHHHHHHHHhcCCCC
Q psy355 246 FIKEKHAGNEVYHKELEHVNSVLTEVFEEDS 276 (285)
Q Consensus 246 ~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~ 276 (285)
+.+..+|+ ..|.++|+++++|+++||+++|
T Consensus 470 d~I~~~Q~-s~n~~iy~KAYsIIe~fFgeeD 499 (526)
T COG5064 470 DAIHGLQD-SVNRTIYDKAYSIIEKFFGEED 499 (526)
T ss_pred HHHHHhhh-ccccHHHHHHHHHHHHHcccch
Confidence 35668884 4899999999999999999886
No 4
>KOG0166|consensus
Probab=99.92 E-value=1.6e-24 Score=202.54 Aligned_cols=197 Identities=17% Similarity=0.344 Sum_probs=173.9
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy355 26 KIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII 104 (285)
Q Consensus 26 ~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~ 104 (285)
..++.|.... ....+..|.+.|..++.. .+..+.+++.|++|.++.||.|++..|+.+|.|+|||++...|.+++.++
T Consensus 113 ~lV~~l~~~~-~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl 191 (514)
T KOG0166|consen 113 RLVEFLSRDD-NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVL 191 (514)
T ss_pred HHHHHHccCC-ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHH
Confidence 3444444322 356688999999998765 46777899999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC-hHh-HHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355 105 QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN-EEC-LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN 182 (285)
Q Consensus 105 ~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~-~~~-~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~ 182 (285)
++|++++|+.++.........+.+.|+|||+|||. |+. ...+ ...+|.|..++.+.|..+...|||+|++|+.+.+
T Consensus 192 ~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v--~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 192 SCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV--APILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred hhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 99999999999997554578999999999999997 333 2333 4789999999999999999999999999999999
Q ss_pred hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 183 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 183 ~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
+..+.+++.|+++.|+.+|.++ ...++..|++++.||+.++..
T Consensus 270 e~iq~vi~~gvv~~LV~lL~~~---~~~v~~PaLRaiGNIvtG~d~ 312 (514)
T KOG0166|consen 270 EKIQMVIDAGVVPRLVDLLGHS---SPKVVTPALRAIGNIVTGSDE 312 (514)
T ss_pred HHHHHHHHccchHHHHHHHcCC---CcccccHHHhhccceeeccHH
Confidence 9999999999999999999999 999999999999999999974
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.89 E-value=1.3e-22 Score=178.87 Aligned_cols=199 Identities=16% Similarity=0.310 Sum_probs=165.2
Q ss_pred HHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC
Q psy355 42 IGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS 120 (285)
Q Consensus 42 ~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~ 120 (285)
.+|.+.|......- +.-.-.++.|++|.++.+|.+++.+||.+|.|+|||+|...+.|++.++++|++.+++.+|.++.
T Consensus 133 fEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~ 212 (526)
T COG5064 133 FEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA 212 (526)
T ss_pred HHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc
Confidence 35555665555442 22334688999999999999999999999999999999999999999999999999999998643
Q ss_pred -CHHHHHHHHHHHHHHhhCCh--HhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHH
Q psy355 121 -NTTVQVKSLYAVSCLVRDNE--ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM 197 (285)
Q Consensus 121 -~~~v~~~a~~ALs~l~r~~~--~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L 197 (285)
+.++.+.+.|.|||+|||.. +....+ ...+|.|.+++.+.|+.+...|+|+|++|..+..+..+.+++.|+.+.|
T Consensus 213 ~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RL 290 (526)
T COG5064 213 IHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRL 290 (526)
T ss_pred chHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHH
Confidence 35888999999999999943 333333 3578999999999999999999999999999988999999999999999
Q ss_pred HHhcccCCCCCccHHHHHHHHHHHHHhcChH---HHhhcccCcccHHHHHHH
Q psy355 198 CVLIDIEDALDTEMNEHLLSALASLIKDSTE---AQSLCRLEPLNLKFKLNF 246 (285)
Q Consensus 198 ~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~---~~~~~~~~~~~l~~~l~~ 246 (285)
+.+|.++ +..++..+++.+.+|+.++.. .+..|+... .|..+|.+
T Consensus 291 vElLs~~---sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~-a~~~lLs~ 338 (526)
T COG5064 291 VELLSHE---SAKIQTPALRSVGNIVTGSDDQTQVIINCGALK-AFRSLLSS 338 (526)
T ss_pred HHHhcCc---cccccCHHHHhhcCeeecCccceehheecccHH-HHHHHhcC
Confidence 9999999 999999999999999998863 344665433 44444543
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.88 E-value=8.4e-21 Score=200.15 Aligned_cols=230 Identities=14% Similarity=0.144 Sum_probs=191.9
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC
Q psy355 41 CIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS 120 (285)
Q Consensus 41 ~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~ 120 (285)
...+...|..++-++.+...|...|++++|+.||.+++.++|..|+|+|.+++.+++..++.+.+.|++|.|+++|.+ .
T Consensus 380 qe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s-~ 458 (2102)
T PLN03200 380 QERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL-S 458 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC-C
Confidence 466788888888888888899999999999999999999999999999999999999999999999999999999997 5
Q ss_pred CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHh
Q psy355 121 NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL 200 (285)
Q Consensus 121 ~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~l 200 (285)
+..+++.|+|+|++++.+++.+...++++||+|+|+++|++++.++|+.|+|+|+|++.+.++.+..+.+.|++++|+.+
T Consensus 459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L 538 (2102)
T PLN03200 459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL 538 (2102)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH
Confidence 68999999999999999999989999999999999999999999999999999999998766666666688999999999
Q ss_pred cccCCCCCccHHHHHHHHHHHHHhcChHHH-hh------cccCcc---------------cHHH----------HHHHHH
Q psy355 201 IDIEDALDTEMNEHLLSALASLIKDSTEAQ-SL------CRLEPL---------------NLKF----------KLNFIK 248 (285)
Q Consensus 201 L~~~~~~d~~~~e~al~aL~~l~~~~~~~~-~~------~~~~~~---------------~l~~----------~l~~~~ 248 (285)
|+++ +.+.++.++.+|.+|+..+.... .. +..+.. ...+ -+ ..+
T Consensus 539 L~sg---d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL-~~L 614 (2102)
T PLN03200 539 LKNG---GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL-RTL 614 (2102)
T ss_pred HhCC---CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH-HHH
Confidence 9998 99999999999999976543210 00 000000 0000 01 123
Q ss_pred HHccChHhhHHHHHHHHHHHHHhcCCCC
Q psy355 249 EKHAGNEVYHKELEHVNSVLTEVFEEDS 276 (285)
Q Consensus 249 ~~l~~~~e~~~~~~~~~~il~~~f~~~~ 276 (285)
..++. +++.++++.+..+|..||....
T Consensus 615 v~LL~-sgs~~ikk~Aa~iLsnL~a~~~ 641 (2102)
T PLN03200 615 IQLLS-SSKEETQEKAASVLADIFSSRQ 641 (2102)
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHhcCCh
Confidence 35553 4688999999999999998543
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=1e-19 Score=192.05 Aligned_cols=237 Identities=15% Similarity=0.140 Sum_probs=188.9
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh
Q psy355 27 IIKTLKENQDQKDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ 105 (285)
Q Consensus 27 ~l~~l~~~~~~~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~ 105 (285)
.++.|..+ +.+.+..|+..|..++... ++...+++.||+|+|+++|.++++.+|..|+|+|+|++.+++.++..+.+
T Consensus 451 LV~LL~s~--s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~ 528 (2102)
T PLN03200 451 LISLLGLS--SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVES 528 (2102)
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 44444443 3567888999999998654 56778999999999999999999999999999999999988888888889
Q ss_pred cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-------------------------------------HHHHHh
Q psy355 106 TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-------------------------------------LKEFIK 148 (285)
Q Consensus 106 ~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-------------------------------------~~~f~~ 148 (285)
.|++|+|+++|++ .+..++..|+|+|++++.+.... .+....
T Consensus 529 aGAIppLV~LL~s-gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~ 607 (2102)
T PLN03200 529 AGAVPALLWLLKN-GGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAA 607 (2102)
T ss_pred CCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhc
Confidence 9999999999997 57899999999999997543221 011124
Q ss_pred cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 149 ~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
.||++.|+++|++++.++|++|+|+|.+++.+.+++++.++..|+|++++.+|.+. +.+++..+..+|.+++....+
T Consensus 608 ~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~---~~~v~keAA~AL~nL~~~~~~ 684 (2102)
T PLN03200 608 NDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN---TEAVATQSARALAALSRSIKE 684 (2102)
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC---ChHHHHHHHHHHHHHHhCCCH
Confidence 68999999999999999999999999999999999999999999999999999998 999999999999999976643
Q ss_pred HHh-hcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCC
Q psy355 229 AQS-LCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDS 276 (285)
Q Consensus 229 ~~~-~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~ 276 (285)
... ... ....+..+++ .+. ..+.+..+.+-..|..++.+++
T Consensus 685 ~q~~~~v-~~GaV~pL~~----LL~--~~d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 685 NRKVSYA-AEDAIKPLIK----LAK--SSSIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHHHHH-HcCCHHHHHH----HHh--CCChHHHHHHHHHHHHHHcCch
Confidence 221 111 1112222222 333 2456777888888888877665
No 8
>KOG4224|consensus
Probab=99.76 E-value=7.1e-17 Score=143.86 Aligned_cols=189 Identities=20% Similarity=0.319 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--cHHHHHHh
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD--FLNLLLTS 115 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g--~l~~L~~L 115 (285)
...+-.|++.|..+.+.-+|-+.++..||+|.||.++.++++++|..++.+|++++- ....+..+.+.| .+|.|++|
T Consensus 181 irvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~L 259 (550)
T KOG4224|consen 181 IRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDL 259 (550)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999996 456788889998 99999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHH
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 195 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~ 195 (285)
.++ +++.++-.|..||.+++.+...+ ..+.++|++|.++++|+++..++.-...++|.|+.-+ |-....+++.|++.
T Consensus 260 md~-~s~kvkcqA~lALrnlasdt~Yq-~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plNe~lI~dagfl~ 336 (550)
T KOG4224|consen 260 MDD-GSDKVKCQAGLALRNLASDTEYQ-REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLNEVLIADAGFLR 336 (550)
T ss_pred HhC-CChHHHHHHHHHHhhhcccchhh-hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCcccceecccchh
Confidence 996 67799999999999999876654 5688999999999999999999999999999998654 44556788999999
Q ss_pred HHHHhcccCCCCCc-cHHHHHHHHHHHHHhcChHHHhhc
Q psy355 196 QMCVLIDIEDALDT-EMNEHLLSALASLIKDSTEAQSLC 233 (285)
Q Consensus 196 ~L~~lL~~~~~~d~-~~~e~al~aL~~l~~~~~~~~~~~ 233 (285)
+|+.+|..+ |. +++-+|..+|++++..+...+...
T Consensus 337 pLVrlL~~~---dnEeiqchAvstLrnLAasse~n~~~i 372 (550)
T KOG4224|consen 337 PLVRLLRAG---DNEEIQCHAVSTLRNLAASSEHNVSVI 372 (550)
T ss_pred HHHHHHhcC---CchhhhhhHHHHHHHHhhhhhhhhHHH
Confidence 999999988 54 599999999999998776554433
No 9
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.72 E-value=2.7e-16 Score=121.54 Aligned_cols=119 Identities=20% Similarity=0.300 Sum_probs=112.1
Q ss_pred HHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC
Q psy355 60 DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN 139 (285)
Q Consensus 60 ~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~ 139 (285)
.+++.|+++.|+++|.++++.+|..|+++|++++.++|.....+++.|++|.|++++.+ +++.++..|+|+|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCc
Confidence 36789999999999999999999999999999999989999999999999999999996 67899999999999999998
Q ss_pred hHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355 140 EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 179 (285)
Q Consensus 140 ~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~ 179 (285)
+.....+.+.|+++.|++++.+++.+++..|+|++.+|+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 8888888889999999999999999999999999999863
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.62 E-value=1.7e-14 Score=111.38 Aligned_cols=118 Identities=22% Similarity=0.376 Sum_probs=111.1
Q ss_pred HHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC
Q psy355 102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 181 (285)
Q Consensus 102 ~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~ 181 (285)
.+++.|++|.|++++.+ .+..++..++++|++++.+.+.....+++.|+++.++.+|.+++++++..|+|++++++...
T Consensus 2 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 36789999999999996 56899999999999999998999999999999999999999999999999999999999998
Q ss_pred chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 182 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 182 ~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
+.....+++.|+++.|+.+|..+ +..+++.++.+|.+|+
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~---~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSS---NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcC---CHHHHHHHHHHHHHhh
Confidence 88889999999999999999998 9999999999999886
No 11
>KOG4224|consensus
Probab=99.57 E-value=5.1e-14 Score=125.80 Aligned_cols=185 Identities=18% Similarity=0.271 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 117 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~ 117 (285)
+..++.|-.+|..+..+-.+...++..|++|.+++||+++.-........+|.|++- .|-..-.+++.|.+.||+++|+
T Consensus 265 ~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~ 343 (550)
T KOG4224|consen 265 DKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLR 343 (550)
T ss_pred hHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHh
Confidence 578889999999999999999999999999999999999998888888899988874 4656667899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHH
Q psy355 118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM 197 (285)
Q Consensus 118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L 197 (285)
...+++++-.|...|-|++..+..+...|.+.|.+|.++.++.+++-.+|.+...+++-|+-. ...+.++.+.|+++.|
T Consensus 344 ~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iL 422 (550)
T KOG4224|consen 344 AGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN-DNDKEALLDSGIIPIL 422 (550)
T ss_pred cCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc-cccHHHHhhcCCccee
Confidence 877788999999999999998999999999999999999999999999999888888877664 4578999999999999
Q ss_pred HHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 198 CVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 198 ~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+.++.+. +.+++..+..+|.++..+-.
T Consensus 423 Ip~t~s~---s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 423 IPWTGSE---SEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred ecccCcc---chhhcccHHHHHHhhhhhhH
Confidence 9999998 99999999999999987654
No 12
>KOG2160|consensus
Probab=99.49 E-value=1.2e-11 Score=111.01 Aligned_cols=184 Identities=17% Similarity=0.251 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 117 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~ 117 (285)
+.+...-+...++++......++.++ ++...+ ..+.+++=+..|+.-|-..+.+-+ ....++..|++++++.++.
T Consensus 59 e~~~~~~e~~k~~~~~~~~~~~~~~~---~~~~~~~~~s~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~ 134 (342)
T KOG2160|consen 59 ELMQAHTEDQKDFVEDMKVISDVMSM---IPIVILNSSSVDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLE 134 (342)
T ss_pred HHHHHhhhhhhhhcccchhHHHHHHh---hhhhccCcccCCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhc
Confidence 33444455556677777777777776 333333 345778889999999999997554 5777999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355 118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 196 (285)
Q Consensus 118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~ 196 (285)
+ ++..+|+.|+|.|+.++++||..|+.+++.||++.|+..|.++ +..++.||.+++++|.++++.....+...++...
T Consensus 135 ~-~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~ 213 (342)
T KOG2160|consen 135 N-SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQV 213 (342)
T ss_pred C-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHH
Confidence 7 6789999999999999999999999999999999999999976 5888999999999999999999999999999999
Q ss_pred HHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 197 MCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 197 L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
|...|.++ +.+..++.+++..+..+++..+.
T Consensus 214 L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 214 LRDVLQSN-NTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHHHcC-CcchHHHHHHHHHHHHHHHhhhh
Confidence 99999984 23788999999999999988763
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.42 E-value=5.5e-11 Score=114.65 Aligned_cols=182 Identities=14% Similarity=0.221 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~ 118 (285)
+....+.+.|..+.+..+...- ..+..+.|...|.|+++.||..|++.|+++++++....+.+.+.++++.++.++.+
T Consensus 53 e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~ 130 (503)
T PF10508_consen 53 EQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD 130 (503)
T ss_pred HHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC
Confidence 4555666667777766543332 34556788889999999999999999999999999888899999999999999996
Q ss_pred CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHH
Q psy355 119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC 198 (285)
Q Consensus 119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~ 198 (285)
++..+.+.|+.+|++++.+ +...+.+++.++++.|..++..++..+|.++..++.+++..+++......+.|+++.++
T Consensus 131 -~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll 208 (503)
T PF10508_consen 131 -PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLL 208 (503)
T ss_pred -CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHH
Confidence 7889999999999999985 55667788889999999999988888999999999999999999999999999999999
Q ss_pred HhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 199 VLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 199 ~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
..|+++ |.-++..++..|..|+. .++
T Consensus 209 ~eL~~d---DiLvqlnalell~~La~-~~~ 234 (503)
T PF10508_consen 209 KELDSD---DILVQLNALELLSELAE-TPH 234 (503)
T ss_pred HHhcCc---cHHHHHHHHHHHHHHHc-Chh
Confidence 999998 99999999999999998 443
No 14
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.38 E-value=1.8e-10 Score=113.62 Aligned_cols=197 Identities=13% Similarity=0.137 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~ 118 (285)
.....++.-|..+.++..+-..+++-|+++.|+++|.+++.++...+..+|.+++-. +.++..+.+.|++|+|.+++.+
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcC
Confidence 345566778999999999999999999999999999999999999999999999964 5579999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHH
Q psy355 119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC 198 (285)
Q Consensus 119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~ 198 (285)
++..++..++.+|-|++-+ +.....+++.|.+|.|+.+|.+++ .+.-+..++++|+. ++..+..+...++++.++
T Consensus 343 -~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~ 417 (708)
T PF05804_consen 343 -ENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSM-DDEARSMFAYTDCIPQLM 417 (708)
T ss_pred -CCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHH
Confidence 5678999999999999875 556788999999999999998654 44568888888876 456888999999999999
Q ss_pred HhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHH
Q psy355 199 VLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLN 245 (285)
Q Consensus 199 ~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~ 245 (285)
.+|... .+..+...++..+.+++...+.+..-|... +|..+++
T Consensus 418 ~~Ll~~--~~~~v~~eliaL~iNLa~~~rnaqlm~~g~--gL~~L~~ 460 (708)
T PF05804_consen 418 QMLLEN--SEEEVQLELIALLINLALNKRNAQLMCEGN--GLQSLMK 460 (708)
T ss_pred HHHHhC--CCccccHHHHHHHHHHhcCHHHHHHHHhcC--cHHHHHH
Confidence 986653 155566667788888887777666666432 4555555
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.32 E-value=3.3e-10 Score=99.57 Aligned_cols=196 Identities=19% Similarity=0.240 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH
Q psy355 21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ 100 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q 100 (285)
.+.+++.+..|....+ +..+..|+-.+.......-+..-+.+.||++.+..+|.+|++.+|..|++++.|++.+. +.|
T Consensus 11 ~~~l~~Ll~lL~~t~d-p~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en~ 88 (254)
T PF04826_consen 11 AQELQKLLCLLESTED-PFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-ENQ 88 (254)
T ss_pred HHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hhH
Confidence 4667888888876554 34555666666665555456667899999999999999999999999999999999754 456
Q ss_pred HHHHhcCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355 101 NFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 179 (285)
Q Consensus 101 ~~v~~~g~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~ 179 (285)
..+ + ..++.+++...+ .-+..++..++.+|.+++..+.. ...+ .+.++.++++|.+++.++|..+..++.+| +
T Consensus 89 ~~I-k-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nL-S 162 (254)
T PF04826_consen 89 EQI-K-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-HHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNL-S 162 (254)
T ss_pred HHH-H-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-hhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHh-c
Confidence 555 3 267777776544 34668999999999999865433 3334 46899999999999999999999999998 4
Q ss_pred CCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 180 DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 180 ~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
.+|...+.++..+++..++.++... .+.++...++..+.+|..+-
T Consensus 163 ~np~~~~~Ll~~q~~~~~~~Lf~~~--~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 163 ENPDMTRELLSAQVLSSFLSLFNSS--ESKENLLRVLTFFENINENI 207 (254)
T ss_pred cCHHHHHHHHhccchhHHHHHHccC--CccHHHHHHHHHHHHHHHhh
Confidence 5678888999999999999999875 35677888888888886544
No 16
>KOG4199|consensus
Probab=99.31 E-value=2.7e-10 Score=101.22 Aligned_cols=178 Identities=13% Similarity=0.209 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC-CCHHHH---HHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 40 ICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG-SDPELR---WRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 40 ~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s-~~~~vr---~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
....+...|..+.-.-+....+.+.||+..|++++.+ ....+| ..++..|..++ +++.+...+++.|+.+.++.+
T Consensus 258 ~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l 336 (461)
T KOG4199|consen 258 SLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITL 336 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHH
Confidence 3334444444443333455668889999999999986 445555 67777888777 567789999999999999988
Q ss_pred h-ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHHHHHHCC
Q psy355 116 I-EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMG 192 (285)
Q Consensus 116 L-~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g 192 (285)
+ ++.+++.|...++.+||-++--.|.....|++.||-...++.|+.. ...+|+.|||+|+|++..+.+++..++..|
T Consensus 337 ~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G 416 (461)
T KOG4199|consen 337 ALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG 416 (461)
T ss_pred HHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc
Confidence 6 4567899999999999999988888888999999999999999975 478999999999999999888888888755
Q ss_pred cHHHHHHhcccCCCCCccHHHHHHHHHHHH
Q psy355 193 MVEQMCVLIDIEDALDTEMNEHLLSALASL 222 (285)
Q Consensus 193 ~v~~L~~lL~~~~~~d~~~~e~al~aL~~l 222 (285)
++.|+..-+.. +...+..+-.+|.-|
T Consensus 417 -iE~Li~~A~~~---h~tce~~akaALRDL 442 (461)
T KOG4199|consen 417 -IEKLIRTAKAN---HETCEAAAKAALRDL 442 (461)
T ss_pred -HHHHHHHHHhc---CccHHHHHHHHHHhc
Confidence 56666666665 666666666666544
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.30 E-value=1.2e-10 Score=102.40 Aligned_cols=157 Identities=20% Similarity=0.266 Sum_probs=125.9
Q ss_pred HHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355 62 LKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 62 ~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~ 140 (285)
...+.+..|+.+|++ .+|.++..|..++|+.+ ..|..|+.+.+.|+++.+.++|.. +++.+|.+|++||.|++.+.+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCChh
Confidence 445668999999985 78999999999999987 578999999999999999999997 789999999999999987644
Q ss_pred HhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355 141 ECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 219 (285)
Q Consensus 141 ~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL 219 (285)
. +..+ +.-+-.++-..+.++ +..+|..+..+|.+|+..+. ....+. +.++.++.+|.++ +..++.+++.+|
T Consensus 87 n-~~~I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~~~~l~--~~i~~ll~LL~~G---~~~~k~~vLk~L 158 (254)
T PF04826_consen 87 N-QEQI-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-YHHMLA--NYIPDLLSLLSSG---SEKTKVQVLKVL 158 (254)
T ss_pred h-HHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-hhhhHH--hhHHHHHHHHHcC---ChHHHHHHHHHH
Confidence 4 3333 333333444444444 78999999999999976543 333343 4799999999999 999999999999
Q ss_pred HHHHhcChH
Q psy355 220 ASLIKDSTE 228 (285)
Q Consensus 220 ~~l~~~~~~ 228 (285)
.+|......
T Consensus 159 ~nLS~np~~ 167 (254)
T PF04826_consen 159 VNLSENPDM 167 (254)
T ss_pred HHhccCHHH
Confidence 999876653
No 18
>KOG4199|consensus
Probab=99.29 E-value=1.5e-09 Score=96.51 Aligned_cols=198 Identities=13% Similarity=0.225 Sum_probs=160.2
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhcC----------cchHHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhC
Q psy355 27 IIKTLKENQDQKDICIGALDNLSDYVCS----------IDYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQN 95 (285)
Q Consensus 27 ~l~~l~~~~~~~~~~~~al~~L~~lv~~----------~dna~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~n 95 (285)
.+..|+....+ +....+.+.+..++-+ ...|+.|.+.||+..|+..|+. -+|++...++-+|+.++-+
T Consensus 194 i~~~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 194 ILQVLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 34456665554 4444556666666533 3468889999999999998885 6799999999999999999
Q ss_pred CHHHHHHHHhcCcHHHHHHhhccCCCHHHH---HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc--CcHHHHHHH
Q psy355 96 NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQ---VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS--KKEKLVIKS 170 (285)
Q Consensus 96 n~~~q~~v~~~g~l~~L~~LL~~~~~~~v~---~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~--~~~~v~~ka 170 (285)
++.|+ .+.+.|++..|++++.++.+...| +.+++.|+.++ |+......+++.||.+.++.++.. +++.+-..+
T Consensus 273 ~E~C~-~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 273 DEICK-SIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHH-HHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 88877 588999999999999975444444 66777777764 677788899999999999998764 589999999
Q ss_pred HHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 171 CFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 171 ~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
+.+++-||-..|+....+++.|+-...++-++.. -....++..+..++.||+..+..
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah-P~~a~vQrnac~~IRNiv~rs~~ 407 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH-PVAAQVQRNACNMIRNIVVRSAE 407 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999998888863 12457899999999999988853
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.28 E-value=2.3e-09 Score=103.46 Aligned_cols=178 Identities=14% Similarity=0.159 Sum_probs=152.5
Q ss_pred HHHHHHHHhccCC--CHHHHHHHHHHHHHhhcCcch-HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH
Q psy355 24 LEKIIKTLKENQD--QKDICIGALDNLSDYVCSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ 100 (285)
Q Consensus 24 mk~~l~~l~~~~~--~~~~~~~al~~L~~lv~~~dn-a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q 100 (285)
..++...|...-. ++..+.-++..+..++...+. +.-+...+.++.++.+|.+++..|...|+.+|.+++.+.+..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~- 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL- 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-
Confidence 4444444443332 246788888999998877665 344677888999999999999999999999999999876654
Q ss_pred HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355 101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 101 ~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~ 180 (285)
+.++..+.++.|.+++.. .+..+|.++...+..++..++.....+...|.++.++..|.++|.-+|..|+-+++.|+.
T Consensus 154 ~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~- 231 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE- 231 (503)
T ss_pred HHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence 467788889999999986 467899999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHCCcHHHHHHhcccC
Q psy355 181 NNQVKQVLLSMGMVEQMCVLIDIE 204 (285)
Q Consensus 181 ~~~~~~~l~~~g~v~~L~~lL~~~ 204 (285)
.++..+++.+.|+++.|+.++...
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhcc
Confidence 778899999999999999999876
No 20
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.22 E-value=3.8e-09 Score=104.35 Aligned_cols=179 Identities=13% Similarity=0.152 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 117 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~ 117 (285)
.+..+.++.-|..+.-..+|...+.+.|++++|++++.+++.+++..|+++|.|++. ++..+..+++.|++|+|+.+|.
T Consensus 304 ~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~ 382 (708)
T PF05804_consen 304 EELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLK 382 (708)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhC
Confidence 466777777888887777899999999999999999999999999999999999996 5667999999999999999998
Q ss_pred cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355 118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 196 (285)
Q Consensus 118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~ 196 (285)
.+ ..+..++..|.+++.+ +.+...|...+.+|.++++|-+ ++.++...+.+++.||+... ...+.+.+.|+++.
T Consensus 383 d~---~~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~ 457 (708)
T PF05804_consen 383 DP---NFREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQS 457 (708)
T ss_pred CC---chHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHH
Confidence 53 3556677788888774 4567788888999999997554 57888889999999997765 45578888889999
Q ss_pred HHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 197 MCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 197 L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
|+...-.. ... ..+..+.||.++.+.
T Consensus 458 L~~ra~~~---~D~---lLlKlIRNiS~h~~~ 483 (708)
T PF05804_consen 458 LMKRALKT---RDP---LLLKLIRNISQHDGP 483 (708)
T ss_pred HHHHHHhc---ccH---HHHHHHHHHHhcCch
Confidence 98775544 222 344678888887743
No 21
>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].
Probab=99.10 E-value=1.3e-10 Score=86.09 Aligned_cols=59 Identities=25% Similarity=0.346 Sum_probs=55.9
Q ss_pred HHhHHHHHHHHHHhc--CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHH
Q psy355 3 EANRGFLLDALNSMM--VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDF 61 (285)
Q Consensus 3 ~e~~~~L~~al~~~~--~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~ 61 (285)
+++|+|..++|..++ ++++++||+++.+|.+++.+.++++.||++|++||++||||+++
T Consensus 32 ~~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald~le~LVE~IDNANnl 92 (92)
T PF08609_consen 32 EERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALDNLEELVENIDNANNL 92 (92)
T ss_pred hhhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHcccccccC
Confidence 468999999999998 99999999999999999999999999999999999999999974
No 22
>KOG0168|consensus
Probab=99.05 E-value=6e-09 Score=101.80 Aligned_cols=198 Identities=15% Similarity=0.208 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHH---HHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhh
Q psy355 19 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYAN---DFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQ 94 (285)
Q Consensus 19 d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~---~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~ 94 (285)
..--+||+.+.-|.... ++...+.|+-+|.+++.. -|-. .|----.+|.|+.||++ .+++|.-.||++|.+++.
T Consensus 164 sasSk~kkLL~gL~~~~-Des~Qleal~Elce~L~m-gnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e 241 (1051)
T KOG0168|consen 164 SASSKAKKLLQGLQAES-DESQQLEALTELCEMLSM-GNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE 241 (1051)
T ss_pred cchHHHHHHHHhccccC-ChHHHHHHHHHHHHHHhh-cchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 33448899988887776 344555555555554422 1111 12212247899999998 578999999999999999
Q ss_pred CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHH
Q psy355 95 NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLI 174 (285)
Q Consensus 95 nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l 174 (285)
--|..-..+++.|+||.|+.-|..-....+.+.++.||--|.|.++. +++++||+...+..|.--+.-+|++|....
T Consensus 242 vlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~Alaia 318 (1051)
T KOG0168|consen 242 VLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIA 318 (1051)
T ss_pred hccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997766556788999999999999998886 478899999999999877899999999999
Q ss_pred HHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 175 ACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 175 ~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+|.|.. .++--.++. ..+|.|..+|... |.+..|.++-++..|+...
T Consensus 319 aN~Cksi~sd~f~~v~--ealPlL~~lLs~~---D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 319 ANCCKSIRSDEFHFVM--EALPLLTPLLSYQ---DKKPIESVCICLTRIADGF 366 (1051)
T ss_pred HHHHhcCCCccchHHH--HHHHHHHHHHhhc---cchhHHHHHHHHHHHHHhc
Confidence 999987 444555555 4899999999998 9999999999999998655
No 23
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.01 E-value=3.8e-08 Score=89.42 Aligned_cols=223 Identities=14% Similarity=0.206 Sum_probs=147.5
Q ss_pred CCHHhHHHHHHHHHHhc--------CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcC------
Q psy355 1 MNEANRGFLLDALNSMM--------VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMG------ 65 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~--------~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~G------ 65 (285)
+|+|+.++++..=+.-. .+.....+-.+..|+.-...++...-.|.-+.+++.+ ......|....
T Consensus 26 is~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~ 105 (312)
T PF03224_consen 26 ISEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSD 105 (312)
T ss_dssp S-HHHHHHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH-
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccch
Confidence 35666666664333221 1111222223344444422345566666667776655 34555565522
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC---CCHHHHHHHHHHHHHHhhCChHh
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD---SNTTVQVKSLYAVSCLVRDNEEC 142 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~---~~~~v~~~a~~ALs~l~r~~~~~ 142 (285)
-+.++++++.+++.-++..|+.+++.++...+....... .+.++.+++.+.+. ++..++.-|+.+++++.+ .+..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~ 183 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEY 183 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchh
Confidence 588999999999999999999999999887665444322 56788888888752 234567889999999998 5777
Q ss_pred HHHHHhcCcHHHHHHhh------cc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHH
Q psy355 143 LKEFIKRDGFSVLLRCI------QS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL 215 (285)
Q Consensus 143 ~~~f~~~~gi~~L~~~L------~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~a 215 (285)
...|.+.||++.+..+| ++ ....++=.+++++.-|+- ++.....+.+.++|+.|+.+++.. ...++...+
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~--~KEKvvRv~ 260 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDS--IKEKVVRVS 260 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhc--ccchHHHHH
Confidence 88899999999999999 23 367888899988887654 567888899999999999999975 256888899
Q ss_pred HHHHHHHHhcChH
Q psy355 216 LSALASLIKDSTE 228 (285)
Q Consensus 216 l~aL~~l~~~~~~ 228 (285)
+.+|.|++...+.
T Consensus 261 la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 261 LAILRNLLSKAPK 273 (312)
T ss_dssp HHHHHHTTSSSST
T ss_pred HHHHHHHHhccHH
Confidence 9999999988863
No 24
>KOG1048|consensus
Probab=99.00 E-value=9.1e-09 Score=100.24 Aligned_cols=179 Identities=17% Similarity=0.196 Sum_probs=141.9
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH--hHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE--CLK 144 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~--~~~ 144 (285)
+|..+.+|.|.++.++..|+.-|..++-++...+..+.+.|+||.|+.||.+ ....|++.|||||-|++.+... +.-
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCcccch
Confidence 6788899999999999999999999999999999999999999999999998 5789999999999999998766 777
Q ss_pred HHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC----CC---C----CccHH
Q psy355 145 EFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE----DA---L----DTEMN 212 (285)
Q Consensus 145 ~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~----~~---~----d~~~~ 212 (285)
++.+.||++.++++|+. .|..+++.++.++.||.+. ...+..++ ...+..|-..+-.+ ++ . +.++-
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 88899999999999997 5999999999999999766 34544444 35566665554444 01 1 34566
Q ss_pred HHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHH
Q psy355 213 EHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKE 249 (285)
Q Consensus 213 e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 249 (285)
-.+..+|.++...+.++.+.-+.-. ++.+.|=..+.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~-GLIdaL~~~iq 427 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECD-GLIDALLFSIQ 427 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhcc-chHHHHHHHHH
Confidence 7889999999988876554333332 45455544443
No 25
>KOG1517|consensus
Probab=98.98 E-value=9.5e-09 Score=102.23 Aligned_cols=185 Identities=17% Similarity=0.198 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHhhcCcchHHHH-HHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355 39 DICIGALDNLSDYVCSIDYANDF-LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 117 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~-~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~ 117 (285)
-.+++||.-|..+++---+|.++ ...|.+|.+++||+|+-.++|.-=+.+.+.|..-+|.||..+++.++-..+++.|.
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 35889999999999888889887 67899999999999999999999999999999989999999999999999999988
Q ss_pred cC--CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH
Q psy355 118 HD--SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV 194 (285)
Q Consensus 118 ~~--~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v 194 (285)
.+ -+++-|.-|++.|+.+++|++.+|++..+.+.+...+..|.++ .+-+|..+|-+|+-|....+..+=.-.+.++.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 52 2458899999999999999999999999999999999999986 69999999999999999888777777788999
Q ss_pred HHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 195 EQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 195 ~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+.|..+|..+ -+++|..|..||..++...
T Consensus 645 ekL~~~LsD~---vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 645 EKLILLLSDP---VPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHhcCc---cHHHHHHHHHHHHHHhccc
Confidence 9999999988 9999999999999999875
No 26
>KOG1293|consensus
Probab=98.95 E-value=2.4e-08 Score=95.44 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=137.1
Q ss_pred cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHH
Q psy355 55 IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 134 (285)
Q Consensus 55 ~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~ 134 (285)
++++..+...-....+.......+..++..|+-++-+++..-.....-+-...+..+|++++. +++..|+..++.||.|
T Consensus 367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~-dp~~~i~~~~lgai~N 445 (678)
T KOG1293|consen 367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM-DPEIMIMGITLGAICN 445 (678)
T ss_pred hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh-CcchhHHHHHHHHHHH
Confidence 666666655444444444555778899999999998888755554444555678999999996 4778999999999999
Q ss_pred HhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH-HHHHHhcccCCCCCccHHH
Q psy355 135 LVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV-EQMCVLIDIEDALDTEMNE 213 (285)
Q Consensus 135 l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v-~~L~~lL~~~~~~d~~~~e 213 (285)
++-.+.+-...|+..||+..+...+.+.++.+|.++.|+++++.-+..+..+...-..+- ..++.+...+ +..++|
T Consensus 446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~---d~~Vqe 522 (678)
T KOG1293|consen 446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP---DWAVQE 522 (678)
T ss_pred HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC---CHHHHH
Confidence 999999889999999999999999999999999999999999998765554443333333 5566777777 999999
Q ss_pred HHHHHHHHHHhcChHHH
Q psy355 214 HLLSALASLIKDSTEAQ 230 (285)
Q Consensus 214 ~al~aL~~l~~~~~~~~ 230 (285)
.++..|.|++-++.+.+
T Consensus 523 q~fqllRNl~c~~~~sv 539 (678)
T KOG1293|consen 523 QCFQLLRNLTCNSRKSV 539 (678)
T ss_pred HHHHHHHHhhcCcHHHH
Confidence 99999999998876543
No 27
>KOG1048|consensus
Probab=98.89 E-value=2.1e-08 Score=97.70 Aligned_cols=197 Identities=16% Similarity=0.225 Sum_probs=147.4
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH--H
Q psy355 23 ELEKIIKTLKENQDQKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF--S 99 (285)
Q Consensus 23 ~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~--~ 99 (285)
.+.+++.+|......... .|-.-+..++-.-+ -......+||++.||.+|.|+..+|+.+||+++-|++=++.. .
T Consensus 234 ~lpe~i~mL~~q~~~~qs--naaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQS--NAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhH--HHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 356777777765543333 33333444443322 233688999999999999999999999999999999976554 7
Q ss_pred HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--------------cHH
Q psy355 100 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--------------KEK 165 (285)
Q Consensus 100 q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--------------~~~ 165 (285)
.-++.+.|++|.++++|++..|.++++.....+.||.-. ...+..+-..+++.|..-+-.+ +..
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence 778999999999999999878899999999999998764 3344455456666665543321 256
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHC-CcHHHHHHhcccC---CCCCccHHHHHHHHHHHHH
Q psy355 166 LVIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE---DALDTEMNEHLLSALASLI 223 (285)
Q Consensus 166 v~~ka~~~l~~L~~~~~~~~~~l~~~-g~v~~L~~lL~~~---~~~d~~~~e~al~aL~~l~ 223 (285)
+-..++++|.|+.+.+.+.++.+-+. |.|..|+..+.+- +.-|.+..|.+...|.++.
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLS 451 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLS 451 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcC
Confidence 77899999999999888888888765 8889999887742 2346778888888888764
No 28
>PRK09687 putative lyase; Provisional
Probab=98.87 E-value=1.1e-07 Score=85.18 Aligned_cols=169 Identities=13% Similarity=0.152 Sum_probs=108.2
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 103 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v 103 (285)
++..++.|.+++ ...+..|...|..+-+ -..++.+.++++++++.+|..|+++||.+-.... .
T Consensus 25 ~~~L~~~L~d~d--~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~---- 87 (280)
T PRK09687 25 DDELFRLLDDHN--SLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C---- 87 (280)
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c----
Confidence 334444454433 2566666666664432 1236777888889999999999999998753211 1
Q ss_pred HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH----hHH-------------------HHH---hcCcHHHHHH
Q psy355 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE----CLK-------------------EFI---KRDGFSVLLR 157 (285)
Q Consensus 104 ~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~----~~~-------------------~f~---~~~gi~~L~~ 157 (285)
...++|.|..++.+++++.||..|+.+|+.+..+.+. ... ++. ....++.|+.
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~ 166 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLIN 166 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 1235777877766667888888899998887543220 000 000 1124567777
Q ss_pred hhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHH
Q psy355 158 CIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL 222 (285)
Q Consensus 158 ~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l 222 (285)
+|++++..||..|+++|+.+..+++ .+++.|+.+|..+ +..+|..|..+|..+
T Consensus 167 ~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~---~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 167 LLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK---NEEIRIEAIIGLALR 219 (280)
T ss_pred HhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC---ChHHHHHHHHHHHcc
Confidence 7777777777777777777633232 4567788888777 888888888888774
No 29
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.68 E-value=5.5e-08 Score=61.02 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=37.9
Q ss_pred CHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh
Q psy355 96 NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR 137 (285)
Q Consensus 96 n~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r 137 (285)
||.+++.+++.|++|+|+++|++ .++.+++.|+|||+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKS-PDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTS-SSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhC
Confidence 57788999999999999999996 789999999999999975
No 30
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.68 E-value=1.8e-05 Score=74.38 Aligned_cols=221 Identities=15% Similarity=0.167 Sum_probs=148.7
Q ss_pred CCHHhHHHHHHHHHH-----hc-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHc-----CCHH
Q psy355 1 MNEANRGFLLDALNS-----MM-VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKM-----GGLP 68 (285)
Q Consensus 1 m~~e~~~~L~~al~~-----~~-~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~-----Gg~~ 68 (285)
+|+|+.++++..=+. .. .+.....+-.+..+..... ++...-.|.-+.+++.. ...+..|++. ..+.
T Consensus 26 Is~~d~~~ik~~d~~~~~~~~~~~~~~~y~~~~l~ll~~~~~-~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~ 104 (429)
T cd00256 26 ISEEDYQFIKALEKKRVKEEILDVLSGQYVKTFVNLLSQIDK-DDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWE 104 (429)
T ss_pred CCHHHHHHHHHHHhHHHHHHHhcccHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchH
Confidence 466666666533211 11 2223444445555554332 44444555556666544 2345567765 4678
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355 69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK 148 (285)
Q Consensus 69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~ 148 (285)
+++++|++++.-+...|+.+++.+++-.+.........-.+..|...|++..+...+.-++.+++.+.+. +.....|.+
T Consensus 105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~ 183 (429)
T cd00256 105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVL 183 (429)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHH
Confidence 9999999999999999999999998754432111111113345556666433456777788999999996 445678989
Q ss_pred cCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 149 RDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 149 ~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
.+|++.|+.+|+.. +..++=++++++--|.-+.+ ....+...|+|+.|+.+++.. .-.++...++.+|.|++..+
T Consensus 184 ~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s--~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 184 ADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKES--TKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred ccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhcc
Confidence 99999999999874 56788888888887765543 666777889999999999975 24678888888999999754
No 31
>PRK09687 putative lyase; Provisional
Probab=98.65 E-value=7.8e-07 Score=79.59 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh-hcCCCHHHHHHHHHHHHHHhhC-------------------CH
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQN-------------------NP 97 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~n-------------------n~ 97 (285)
...+..|.+.|..+-.... . ..-.++.|..+ ++.+++.||..|+.+||.+... ++
T Consensus 68 ~~vR~~A~~aLg~lg~~~~-~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~ 142 (280)
T PRK09687 68 PIERDIGADILSQLGMAKR-C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKST 142 (280)
T ss_pred HHHHHHHHHHHHhcCCCcc-c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCH
Confidence 3556666666666533211 0 01135667665 6678888888888888887432 22
Q ss_pred HHHHHHHh-------cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHH
Q psy355 98 FSQNFIIQ-------TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKS 170 (285)
Q Consensus 98 ~~q~~v~~-------~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka 170 (285)
.++..++. ..+++.|+.+|.. ++..||..|+++|+.+..+++ ..++.|+..|.+.+..||..|
T Consensus 143 ~VR~~a~~aLg~~~~~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A 212 (280)
T PRK09687 143 NVRFAVAFALSVINDEAAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEA 212 (280)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHH
Confidence 33333322 1367888888884 667888888888888722222 356789999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 171 CFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 171 ~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
+++|..+-. + .++++|++.|..+ + ++..+..+|..+-
T Consensus 213 ~~aLg~~~~--~---------~av~~Li~~L~~~---~--~~~~a~~ALg~ig 249 (280)
T PRK09687 213 IIGLALRKD--K---------RVLSVLIKELKKG---T--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHccCC--h---------hHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence 999987522 2 5899999999976 5 6677888887764
No 32
>PF05536 Neurochondrin: Neurochondrin
Probab=98.53 E-value=8.9e-06 Score=79.19 Aligned_cols=197 Identities=17% Similarity=0.149 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcch-HH---HHHHcCCHHHHHhhhcC-------CCHHHHHHHHHH
Q psy355 20 VGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDY-AN---DFLKMGGLPVLQPLLEG-------SDPELRWRAAET 88 (285)
Q Consensus 20 ~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dn-a~---~~~~~Gg~~~Lv~lL~s-------~~~~vr~~A~~~ 88 (285)
..+.+++++..|+... |++|..+|--+..++...|. +. .+.+.=|++.+-+||.+ +....+.-|..+
T Consensus 3 ~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred chHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 4567999999999987 68999999999999987652 11 24455568899999997 456889999999
Q ss_pred HHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHH
Q psy355 89 VADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVI 168 (285)
Q Consensus 89 lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ 168 (285)
|+..++ .|.....--=.+-+|.|+..+.+.++..+...|+..|..++ .++...+.|++.|+++.|.+.+.+ .+..+.
T Consensus 81 L~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E 157 (543)
T PF05536_consen 81 LAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQME 157 (543)
T ss_pred HHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHH
Confidence 999998 55543221113579999999987555588999999999999 788899999999999999999987 666778
Q ss_pred HHHHHHHHHhcCCc-----hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 169 KSCFLIACLCTDNN-----QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 169 ka~~~l~~L~~~~~-----~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
.|..++.+++.... .....+. .+++.+....... ....+-.++..|..++...
T Consensus 158 ~Al~lL~~Lls~~~~~~~~~~~~~l~--~il~~La~~fs~~---~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 158 IALNLLLNLLSRLGQKSWAEDSQLLH--SILPSLARDFSSF---HGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHHHHhcchhhhhhhHHHHH--HHHHHHHHHHHhh---ccchHHHHHHHHHHhcCcC
Confidence 89999998887532 1111111 2344555555444 4444445555565555555
No 33
>KOG4500|consensus
Probab=98.52 E-value=3.8e-06 Score=77.38 Aligned_cols=149 Identities=15% Similarity=0.233 Sum_probs=121.2
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHH----hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC
Q psy355 75 EGSDPELRWRAAETVADIVQNNPFSQNFII----QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD 150 (285)
Q Consensus 75 ~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~----~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~ 150 (285)
...+..|+..+..+++.++. |+..+..|. ..|++.+|.+..++ ++..+-...+.||+|+|..+..+..+|.+.|
T Consensus 52 ~~~~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS-~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lg 129 (604)
T KOG4500|consen 52 MTASDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSS-PDTEVHEQCFRALGNICYDNNENRAAFFNLG 129 (604)
T ss_pred eeccchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCC-CcccHHHHHHHHHhhhhccCchhHHHHHhcC
Confidence 34577889999999999984 565555554 45778888888886 4789999999999999999999999999999
Q ss_pred cHHHHHHhhccC-------cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 151 GFSVLLRCIQSK-------KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 151 gi~~L~~~L~~~-------~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
|-+++++.|+.. ..+.-.-++.++.|-..++.+.+..+.+.|+++.|..++.-+ -++....|..+-...+++
T Consensus 130 Gaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~-~qNaa~~e~ll~~f~nll 208 (604)
T KOG4500|consen 130 GAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWID-WQNAALTEKLLAPFFNLL 208 (604)
T ss_pred CceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcc-cccHHHHHHHHhccccHH
Confidence 988888888742 357778888899999899999999999999999999988765 235567788877777766
Q ss_pred hcC
Q psy355 224 KDS 226 (285)
Q Consensus 224 ~~~ 226 (285)
+.-
T Consensus 209 s~~ 211 (604)
T KOG4500|consen 209 SFV 211 (604)
T ss_pred HHH
Confidence 544
No 34
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.49 E-value=1e-06 Score=76.19 Aligned_cols=189 Identities=16% Similarity=0.190 Sum_probs=122.3
Q ss_pred hccCCCHHHHHHHHHHHHHhhcCc---chHHHHHH-c-CCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc
Q psy355 32 KENQDQKDICIGALDNLSDYVCSI---DYANDFLK-M-GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT 106 (285)
Q Consensus 32 ~~~~~~~~~~~~al~~L~~lv~~~---dna~~~~~-~-Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~ 106 (285)
...+.+=+.+..|+..|..++... +....|.. + ..+..+...+.+....|...|+.+++.++..-...-+.. -.
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~ 93 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-AD 93 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HH
Confidence 333444588999999999998654 33444422 1 344677778888889999999999999997432222112 23
Q ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc---h
Q psy355 107 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN---Q 183 (285)
Q Consensus 107 g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~---~ 183 (285)
..+|.|++.+.+ +...++..|..+|-.++.+.+... .++ ++.+...+.+.++.+|..++-.+..++...+ .
T Consensus 94 ~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~-~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 94 ILLPPLLKKLGD-SKKFIREAANNALDAIIESCSYSP-KIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H---HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHH-HHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 488999999996 567999999999999999876211 121 4566778889999999999999999887755 2
Q ss_pred HHH-HHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355 184 VKQ-VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230 (285)
Q Consensus 184 ~~~-~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~ 230 (285)
... ...-..+++.+..++..+ ++++|+.|-.++..+.+..|+..
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~---~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDA---DPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHHH-HHH
T ss_pred hhcccchHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHCCHhh
Confidence 211 111134778889999988 99999999999999988777543
No 35
>KOG1293|consensus
Probab=98.48 E-value=1.2e-05 Score=77.46 Aligned_cols=150 Identities=13% Similarity=0.157 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHh---hcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 39 DICIGALDNLSDY---VCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 39 ~~~~~al~~L~~l---v~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
+....|+.-+..+ |...++. +-...|..+|+++|.-|+..|+..++.+|.|++-.-...+..++..|++..+..+
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 4444555444443 3333433 6777899999999988999999999999999998777789999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCChHhH-HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHC
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDNEECL-KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 191 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~-~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~ 191 (285)
+.+ .+.++|.+++|+|-++.-+..... .++...=+-+.+..+..+++..||..+..+++||+.+..+...++++.
T Consensus 470 ~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~ 545 (678)
T KOG1293|consen 470 LTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK 545 (678)
T ss_pred hcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence 996 778999999999999998876543 334444467788888999999999999999999999877777877764
No 36
>KOG0946|consensus
Probab=98.47 E-value=2.1e-05 Score=77.10 Aligned_cols=183 Identities=19% Similarity=0.236 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc------h-----------HHHHHHcC-CHHHHHhhhcCCCHHHH
Q psy355 21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSID------Y-----------ANDFLKMG-GLPVLQPLLEGSDPELR 82 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d------n-----------a~~~~~~G-g~~~Lv~lL~s~~~~vr 82 (285)
+..|+-.+.+|...-.+.+...-+|+.+.-++..-| + |..|++.- -+..|+.++...+-.||
T Consensus 60 a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR 139 (970)
T KOG0946|consen 60 AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVR 139 (970)
T ss_pred HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhh
Confidence 556888888888877767778888888888764432 2 44466654 45677789999999999
Q ss_pred HHHHHHHHHHhhCCH-HHHHHHHhc-CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc
Q psy355 83 WRAAETVADIVQNNP-FSQNFIIQT-DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ 160 (285)
Q Consensus 83 ~~A~~~lg~~a~nn~-~~q~~v~~~-g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~ 160 (285)
.+|...|.++..+-| +.|++++.. -++..|+.+|.. ..+.+|-.+++-|+.++++++..++-+.=.|.+.-|..++.
T Consensus 140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe 218 (970)
T KOG0946|consen 140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIE 218 (970)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999877654 577777665 588999999995 56789999999999999999998877777899999999987
Q ss_pred cC----cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC
Q psy355 161 SK----KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE 204 (285)
Q Consensus 161 ~~----~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~ 204 (285)
.. ..-|...+..++-||+..+.+.+..+.+.+.|+.|.++|..+
T Consensus 219 eEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f 266 (970)
T KOG0946|consen 219 EEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVF 266 (970)
T ss_pred hcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcc
Confidence 52 347888999999999999999999999999999999999876
No 37
>KOG2122|consensus
Probab=98.47 E-value=2.1e-06 Score=88.30 Aligned_cols=227 Identities=14% Similarity=0.173 Sum_probs=163.6
Q ss_pred CHHhHHHHHHHHHHhc---CCH--HHHHHHHHHHHhccC-------------------CCH-HHHHHHHHHHHHhhcCcc
Q psy355 2 NEANRGFLLDALNSMM---VNV--GAELEKIIKTLKENQ-------------------DQK-DICIGALDNLSDYVCSID 56 (285)
Q Consensus 2 ~~e~~~~L~~al~~~~---~d~--~~~mk~~l~~l~~~~-------------------~~~-~~~~~al~~L~~lv~~~d 56 (285)
++|.|+.+-+||-.+. +|+ ..+.++.+..|...- .++ ..+..|+-.|..+.=+-+
T Consensus 251 ~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEE 330 (2195)
T KOG2122|consen 251 DKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEE 330 (2195)
T ss_pred hHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHH
Confidence 4677888888888885 333 333444444443111 112 345578888877776667
Q ss_pred hHHHHHHcCCHHHHHhhhc-----CC-------CHHHHHHHHHHHHHHhhCCHHHHHHHH-hcCcHHHHHHhhccC----
Q psy355 57 YANDFLKMGGLPVLQPLLE-----GS-------DPELRWRAAETVADIVQNNPFSQNFII-QTDFLNLLLTSIEHD---- 119 (285)
Q Consensus 57 na~~~~~~Gg~~~Lv~lL~-----s~-------~~~vr~~A~~~lg~~a~nn~~~q~~v~-~~g~l~~L~~LL~~~---- 119 (285)
+-..++.+||+..+-.||. +. ...+|..|+.+|.|+.=+...++..+. ..|++..+|..|.++
T Consensus 331 hR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL 410 (2195)
T KOG2122|consen 331 HRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEEL 410 (2195)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHH
Confidence 8888999999999888776 22 347999999999998766554443332 235555555444432
Q ss_pred ---------------------------------------CCHHHHHHHHHHHHHHhhCChHhHHHHHhc-CcHHHHHHhh
Q psy355 120 ---------------------------------------SNTTVQVKSLYAVSCLVRDNEECLKEFIKR-DGFSVLLRCI 159 (285)
Q Consensus 120 ---------------------------------------~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~-~gi~~L~~~L 159 (285)
..+...+..+.||.||..|+..+...|+.. |.+.+|+..|
T Consensus 411 ~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~L 490 (2195)
T KOG2122|consen 411 LQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTL 490 (2195)
T ss_pred HHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhc
Confidence 222345567889999999999988899985 5689999999
Q ss_pred ccC----cHHHHHHHHHHHHHHhc---CCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355 160 QSK----KEKLVIKSCFLIACLCT---DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS 231 (285)
Q Consensus 160 ~~~----~~~v~~ka~~~l~~L~~---~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~ 231 (285)
... ..++...|-.+|.|..+ ....+++.+.+.+++..|+..|++. .-.+...++.+||||...+|+.++
T Consensus 491 SY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~---SLTiVSNaCGTLWNLSAR~p~DQq 566 (2195)
T KOG2122|consen 491 SYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH---SLTIVSNACGTLWNLSARSPEDQQ 566 (2195)
T ss_pred cccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc---ceEEeecchhhhhhhhcCCHHHHH
Confidence 853 46777788888777644 3668999999999999999999998 999999999999999999986544
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=98.44 E-value=0.00014 Score=73.07 Aligned_cols=180 Identities=14% Similarity=0.147 Sum_probs=137.2
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhh-cCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH
Q psy355 19 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYV-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP 97 (285)
Q Consensus 19 d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv-~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~ 97 (285)
++...+++.+ ... +...+..|+..+..+. -..|... +++-+++++.+++.++|.-..-.+.+.+..+|
T Consensus 32 ge~~ELr~~L---~s~--~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p 100 (746)
T PTZ00429 32 GEGAELQNDL---NGT--DSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQP 100 (746)
T ss_pred chHHHHHHHH---HCC--CHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh
Confidence 3455555444 222 3567778877666554 4444433 47888899999999999999999999998888
Q ss_pred HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355 98 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 177 (285)
Q Consensus 98 ~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L 177 (285)
...-. ++..|.+=+.+ +++.+|.-|+.++|+|-- +.-.+ -.++.+.+++.+.++-||++|+.++..+
T Consensus 101 elalL-----aINtl~KDl~d-~Np~IRaLALRtLs~Ir~--~~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kl 167 (746)
T PTZ00429 101 EKALL-----AVNTFLQDTTN-SSPVVRALAVRTMMCIRV--SSVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKL 167 (746)
T ss_pred HHHHH-----HHHHHHHHcCC-CCHHHHHHHHHHHHcCCc--HHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 64322 46667777775 789999999999999732 33222 2356788999999999999999999999
Q ss_pred hcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 178 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 178 ~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
...+|+ .+.+.|+++.|..+|... ++.+...|+.+|..|...+|.
T Consensus 168 y~~~pe---lv~~~~~~~~L~~LL~D~---dp~Vv~nAl~aL~eI~~~~~~ 212 (746)
T PTZ00429 168 FHDDMQ---LFYQQDFKKDLVELLNDN---NPVVASNAAAIVCEVNDYGSE 212 (746)
T ss_pred HhhCcc---cccccchHHHHHHHhcCC---CccHHHHHHHHHHHHHHhCch
Confidence 887774 345678999999999888 999999999999999877654
No 39
>KOG0946|consensus
Probab=98.44 E-value=8.3e-06 Score=79.84 Aligned_cols=217 Identities=19% Similarity=0.266 Sum_probs=161.8
Q ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC--CCH
Q psy355 7 GFLLDALNSMM-----VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG--SDP 79 (285)
Q Consensus 7 ~~L~~al~~~~-----~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s--~~~ 79 (285)
.|+++.+.-.. .+..+.+.+..+-+.+.- -.++|..|+..|.-+.... +.-+..-|+++|+..|+. .++
T Consensus 2 di~~~~~~g~~q~~k~~s~aETI~kLcDRvessT-L~eDRR~A~rgLKa~srkY---R~~Vga~Gmk~li~vL~~D~~D~ 77 (970)
T KOG0946|consen 2 DIFRGSYNGGQQPPKQQSAAETIEKLCDRVESST-LLEDRRDAVRGLKAFSRKY---REEVGAQGMKPLIQVLQRDYMDP 77 (970)
T ss_pred chhhhcccccCCCCccccHHhHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHhhccCCH
Confidence 35555553332 233444444444333321 1477777777777766432 234556789999998875 689
Q ss_pred HHHHHHHHHHHHHhhCCH--------H--------HHHHHHh-cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh
Q psy355 80 ELRWRAAETVADIVQNNP--------F--------SQNFIIQ-TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC 142 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~nn~--------~--------~q~~v~~-~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~ 142 (285)
++...|+.++.++..+.+ . ..+.+++ .+.+..|+..+.. .+-.||..++--|+++.+.-|..
T Consensus 78 E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~-~DF~VR~~aIqLlsalls~r~~e 156 (970)
T KOG0946|consen 78 EIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEE-FDFHVRLYAIQLLSALLSCRPTE 156 (970)
T ss_pred HHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHh-hchhhhhHHHHHHHHHHhcCCHH
Confidence 999999999999988753 1 2334443 4788899999997 67899999999999998876664
Q ss_pred -HHHHHhcC-cHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCC-ccHHHHHHHHH
Q psy355 143 -LKEFIKRD-GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD-TEMNEHLLSAL 219 (285)
Q Consensus 143 -~~~f~~~~-gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d-~~~~e~al~aL 219 (285)
++.++... |++.++.+|.+...-+|-.|..+|..|+.+++++++.+.=.++++.|..++...-..| --+.+-|+..|
T Consensus 157 ~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll 236 (970)
T KOG0946|consen 157 LQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILL 236 (970)
T ss_pred HHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 44455544 9999999999999999999999999999999999999988899999999998751112 35789999999
Q ss_pred HHHHhcChH
Q psy355 220 ASLIKDSTE 228 (285)
Q Consensus 220 ~~l~~~~~~ 228 (285)
.+|++.+..
T Consensus 237 ~NLLK~N~S 245 (970)
T KOG0946|consen 237 NNLLKNNIS 245 (970)
T ss_pred HHHHhhCcc
Confidence 999998853
No 40
>KOG2171|consensus
Probab=98.44 E-value=1.6e-05 Score=80.72 Aligned_cols=153 Identities=15% Similarity=0.217 Sum_probs=119.5
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355 69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK 148 (285)
Q Consensus 69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~ 148 (285)
.+-.+|+|++..-|..|+.+|+.++.|.+..-...+ ..+++..++.|. ++++-||-.||.||+-+..+..+-.+....
T Consensus 352 ~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~-DphprVr~AA~naigQ~stdl~p~iqk~~~ 429 (1075)
T KOG2171|consen 352 ALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLN-DPHPRVRYAALNAIGQMSTDLQPEIQKKHH 429 (1075)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcC-CCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence 344578899999999999999999998765433322 246777778888 488999999999999999999888888887
Q ss_pred cCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCc--hHHHHHHHCCcHH-HHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355 149 RDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNN--QVKQVLLSMGMVE-QMCVLIDIEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 149 ~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~--~~~~~l~~~g~v~-~L~~lL~~~~~~d~~~~e~al~aL~~l~~ 224 (285)
.-.++.|+..+.+. +.+++..|+.++-|+....+ ....++= +++. .+..++.++ .+.++|.++.+|..++.
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd--~lm~~~l~~L~~~~---~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD--GLMEKKLLLLLQSS---KPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH--HHHHHHHHHHhcCC---chhHHHHHHHHHHHHHH
Confidence 88888999999886 68999999999999987633 2222322 4555 344455555 89999999999999997
Q ss_pred cChH
Q psy355 225 DSTE 228 (285)
Q Consensus 225 ~~~~ 228 (285)
....
T Consensus 505 AA~~ 508 (1075)
T KOG2171|consen 505 AAQE 508 (1075)
T ss_pred HHhh
Confidence 7754
No 41
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.42 E-value=6.3e-07 Score=56.15 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=37.8
Q ss_pred ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355 139 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 179 (285)
Q Consensus 139 ~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~ 179 (285)
++.+.+.+++.||++.|+.+|++++.++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46678899999999999999999999999999999999974
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.41 E-value=9.7e-06 Score=78.42 Aligned_cols=171 Identities=17% Similarity=0.192 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~ 118 (285)
..|.-+.-.+..+.+.-.. ...+ .+..+.+-|+|+++.+|..|+++|++++ ++...+. ++|.+.+++.+
T Consensus 57 ~~Krl~yl~l~~~~~~~~~---~~~l-~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~ 125 (526)
T PF01602_consen 57 ELKRLGYLYLSLYLHEDPE---LLIL-IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSD 125 (526)
T ss_dssp HHHHHHHHHHHHHTTTSHH---HHHH-HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcchh---HHHH-HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcC
Confidence 4444444444544443222 1111 4677888899999999999999999998 5654443 58889999996
Q ss_pred CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHH
Q psy355 119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC 198 (285)
Q Consensus 119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~ 198 (285)
+++-||++|+.++..+.+.+|..... . -++.+..+|.++++.++..|+.++..+ ..++.....++ ...+..|.
T Consensus 126 -~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~ 198 (526)
T PF01602_consen 126 -PSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILC 198 (526)
T ss_dssp -SSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhh
Confidence 67899999999999999988775432 1 378899999999999999999999998 33332211111 24556666
Q ss_pred HhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355 199 VLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230 (285)
Q Consensus 199 ~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~ 230 (285)
.++..+ ++-.+..+++.|..+....+...
T Consensus 199 ~~l~~~---~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 199 QLLSDP---DPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp HHHTCC---SHHHHHHHHHHHTTSTSSSHHHH
T ss_pred hccccc---chHHHHHHHHHHHhcccCChhhh
Confidence 777777 88888888888888777665433
No 43
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.41 E-value=5.8e-07 Score=59.98 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHH
Q psy355 79 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 135 (285)
Q Consensus 79 ~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l 135 (285)
|.||..|+++||++++..+...+. ....++|.|+.+|++ +++.||..|+|||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQD-DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence 579999999999999988876655 445699999999986 5679999999999986
No 44
>KOG0168|consensus
Probab=98.41 E-value=1.5e-05 Score=78.60 Aligned_cols=232 Identities=13% Similarity=0.107 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHhhcCcchH-HHHHHcCCHHHHHh-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 38 KDICIGALDNLSDYVCSIDYA-NDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna-~~~~~~Gg~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
.+-+..|...|.++++-.... ...+..|++|.|+. |+.=..-+|-++++.+|-.|.+.+|. +++++|++...+..
T Consensus 226 ~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsy 302 (1051)
T KOG0168|consen 226 FDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSY 302 (1051)
T ss_pred HHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHH
Confidence 467788888888888775433 34688999999986 77789999999999999999998875 79999999999888
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC---CchHHHHHHHC
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLLSM 191 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~---~~~~~~~l~~~ 191 (285)
|+- -+..+++.|+...+|+|..-++ ...-| ...+|.|..+|+..+.+....++-++..++.+ .|+..+.+.+.
T Consensus 303 lDF-FSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~ 379 (1051)
T KOG0168|consen 303 LDF-FSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH 379 (1051)
T ss_pred HHH-HHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch
Confidence 874 3468999999999999987443 44434 46899999999999999999999999988765 67888999999
Q ss_pred CcHHHHHHhcccC-CCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHc-----cChH-----hhHHH
Q psy355 192 GMVEQMCVLIDIE-DALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKH-----AGNE-----VYHKE 260 (285)
Q Consensus 192 g~v~~L~~lL~~~-~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l-----~~~~-----e~~~~ 260 (285)
|.|....+||... ..-+..+..-..++|..+..++|-..+.- ..+++.+.|.+.+.-- ..++ --.+.
T Consensus 380 dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl--~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel 457 (1051)
T KOG0168|consen 380 DLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTL--LKLDIADTLKRILQGYSKSANASLHELLSRSPNEL 457 (1051)
T ss_pred hHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHH--HHhhHHHHHHHHHhccCcCcccccccccccCcHHH
Confidence 9999999998875 11223455667788888888887543311 1123334444332200 0011 13456
Q ss_pred HHHHHHHHHHhcCCCCc
Q psy355 261 LEHVNSVLTEVFEEDSL 277 (285)
Q Consensus 261 ~~~~~~il~~~f~~~~~ 277 (285)
|+.-..+++..|--+.+
T Consensus 458 ~e~~sl~~eLlp~~p~e 474 (1051)
T KOG0168|consen 458 YELTSLIIELLPCLPVE 474 (1051)
T ss_pred HHHHHHHheeecCCccc
Confidence 66666666666655443
No 45
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.40 E-value=1e-06 Score=64.26 Aligned_cols=86 Identities=19% Similarity=0.357 Sum_probs=68.7
Q ss_pred HHHHHhhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 67 LPVLQPLL-EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 67 ~~~Lv~lL-~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
+|.|++.| +++++.+|..|+++||.+- ++ .++|.|+.++++ +++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKD-EDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTS-SSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcC-CCHHHHHHHHHHHHHhC---------
Confidence 57899988 8899999999999999542 22 359999999975 78999999999999872
Q ss_pred HHhcCcHHHHHHhhccC-cHHHHHHHHHHHH
Q psy355 146 FIKRDGFSVLLRCIQSK-KEKLVIKSCFLIA 175 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~ 175 (285)
....++.|.+.+.++ +..+|..|+.+|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 123677888988876 5667888888764
No 46
>KOG2171|consensus
Probab=98.39 E-value=0.00011 Score=74.95 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=136.6
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcC------CHHHHHhhhcC--CC--------------HHHHHH
Q psy355 27 IIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMG------GLPVLQPLLEG--SD--------------PELRWR 84 (285)
Q Consensus 27 ~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~G------g~~~Lv~lL~s--~~--------------~~vr~~ 84 (285)
.+++..+.+-++..|..||+-|-.+++. |-..++.- -++.++.+..- .+ ..--..
T Consensus 252 ~l~Ia~n~~l~~~~R~~ALe~ivs~~e~---Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~ 328 (1075)
T KOG2171|consen 252 SLEIAKNKELENSIRHLALEFLVSLSEY---APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRA 328 (1075)
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHh---hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHH
Confidence 3445566666678899999999999876 44443322 23344444331 11 124456
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcH
Q psy355 85 AAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKE 164 (285)
Q Consensus 85 A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~ 164 (285)
|.++|-.++.+=+.-+- -.-.++.+-.+|.+ ++..-|..|+.|||.++-|++.....-+ -..++.++.+|+++++
T Consensus 329 A~~~lDrlA~~L~g~~v---~p~~~~~l~~~l~S-~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dphp 403 (1075)
T KOG2171|consen 329 AEQALDRLALHLGGKQV---LPPLFEALEAMLQS-TEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHP 403 (1075)
T ss_pred HHHHHHHHHhcCChhhe---hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCH
Confidence 66677666655332111 01244555566775 6789999999999999999988776644 4578888999999999
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355 165 KLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230 (285)
Q Consensus 165 ~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~ 230 (285)
+||-.|+.+|+-+.+.-....+.-...-+++.|+..+.++ +++.++.+|..+|.+....++...
T Consensus 404 rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~--~~~rV~ahAa~al~nf~E~~~~~~ 467 (1075)
T KOG2171|consen 404 RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST--QNVRVQAHAAAALVNFSEECDKSI 467 (1075)
T ss_pred HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc--CchHHHHHHHHHHHHHHHhCcHHH
Confidence 9999999999999888444444444456778999999887 467999999999999999997543
No 47
>KOG2122|consensus
Probab=98.38 E-value=3.2e-06 Score=87.08 Aligned_cols=185 Identities=16% Similarity=0.173 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh-cCcHHHHHHhhc
Q psy355 40 ICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQ-TDFLNLLLTSIE 117 (285)
Q Consensus 40 ~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~-~g~l~~L~~LL~ 117 (285)
.....|.+|.+-.+ +.....|...|-+..|+.+ |......-....+.+|-|++.+..+++..|.. -|++.-|+.+|.
T Consensus 413 V~AsvLRNLSWRAD-~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LS 491 (2195)
T KOG2122|consen 413 VYASVLRNLSWRAD-SNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLS 491 (2195)
T ss_pred HHHHHHHhcccccc-ccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhcc
Confidence 34445566666553 4677789999999999986 55555455566677777777666666666654 499999999998
Q ss_pred cCC---CHHHHHHH---HHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHC
Q psy355 118 HDS---NTTVQVKS---LYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 191 (285)
Q Consensus 118 ~~~---~~~v~~~a---~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~ 191 (285)
-+. ...+...| +.-+|.++..+.+-.+...+++-+..|++.|++.+..+..++|..|.||...+|..++++.+.
T Consensus 492 Y~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~ 571 (2195)
T KOG2122|consen 492 YEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDD 571 (2195)
T ss_pred ccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhc
Confidence 531 12333333 344566777777777778889999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 192 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 192 g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
|+|+.|-+|+.+. +..+.+-+..+|.|++..-|.
T Consensus 572 gAv~mLrnLIhSK---hkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 572 GAVPMLRNLIHSK---HKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred ccHHHHHHHHhhh---hhhhhhhHHHHHHHHhcCCch
Confidence 9999999999998 888999999999999988864
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.34 E-value=5.4e-05 Score=73.25 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=134.3
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc
Q psy355 27 IIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT 106 (285)
Q Consensus 27 ~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~ 106 (285)
.-+.+++...+...+..++..|.++.-.-. ++- -|++.+++++.+.+..++.-+--++..+...++...-.
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~---~~~--~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l---- 79 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMMLGY---DIS--FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL---- 79 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHTT------G--STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---CCc--hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----
Confidence 334444443345788888888888754322 211 68999999999999999999999999999999873222
Q ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHH
Q psy355 107 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 186 (285)
Q Consensus 107 g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~ 186 (285)
++..+.+=|.+ +++.+|.-|+.+||++. ++.-.+. .++.+.+++.++++-||++|+.++..+....|+...
T Consensus 80 -~~n~l~kdl~~-~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 80 -IINSLQKDLNS-PNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp -HHHHHHHHHCS-SSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH
T ss_pred -HHHHHHHhhcC-CCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH
Confidence 56667777776 78999999999999986 4444433 368889999999999999999999999988775432
Q ss_pred HHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 187 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 187 ~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
.. +++.+..+|..+ ++.++..|+.++..+ +.++
T Consensus 151 ---~~-~~~~l~~lL~d~---~~~V~~~a~~~l~~i-~~~~ 183 (526)
T PF01602_consen 151 ---DE-LIPKLKQLLSDK---DPSVVSAALSLLSEI-KCND 183 (526)
T ss_dssp ---GG-HHHHHHHHTTHS---SHHHHHHHHHHHHHH-HCTH
T ss_pred ---HH-HHHHHhhhccCC---cchhHHHHHHHHHHH-ccCc
Confidence 22 689999999888 899999999999998 4444
No 49
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.34 E-value=5.3e-05 Score=78.27 Aligned_cols=132 Identities=10% Similarity=0.046 Sum_probs=89.9
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHh----------hCCHHHHHHHHhc---------CcHHHHHHhhccCCCHHHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIV----------QNNPFSQNFIIQT---------DFLNLLLTSIEHDSNTTVQV 126 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a----------~nn~~~q~~v~~~---------g~l~~L~~LL~~~~~~~v~~ 126 (285)
....|+..|.++++.||..|+++|+.+- ..++.++..+.+. +.++.|..++.. +++.||.
T Consensus 715 ~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D-~d~~VR~ 793 (897)
T PRK13800 715 DAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGD-PDPLVRA 793 (897)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcC-CCHHHHH
Confidence 4456667777778888888887777541 1233444333321 235777777774 5678888
Q ss_pred HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCC
Q psy355 127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDA 206 (285)
Q Consensus 127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~ 206 (285)
.|+.+|+.+- .+.. .++.++..|++++..||..|+++|..+-. ...++.|+.+|+.+
T Consensus 794 aA~~aLg~~g--~~~~--------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~-- 850 (897)
T PRK13800 794 AALAALAELG--CPPD--------DVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDP-- 850 (897)
T ss_pred HHHHHHHhcC--Ccch--------hHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC--
Confidence 8888887762 2211 12456778888888888888888876532 23568899999988
Q ss_pred CCccHHHHHHHHHHHH
Q psy355 207 LDTEMNEHLLSALASL 222 (285)
Q Consensus 207 ~d~~~~e~al~aL~~l 222 (285)
+..+|..|+.+|..+
T Consensus 851 -~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 851 -HLDVRKAAVLALTRW 865 (897)
T ss_pred -CHHHHHHHHHHHhcc
Confidence 999999999999886
No 50
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=98.33 E-value=1.4e-05 Score=70.00 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHH
Q psy355 78 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLR 157 (285)
Q Consensus 78 ~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~ 157 (285)
...+...|+++|--++-.+|.++..+.+..++..|+++|+...++.++..++.+|.++..++|.++..|-+.+|+..+..
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 34567789999999999999999999999999999999976567899999999999999999999999999999999999
Q ss_pred hhccC--cHHHHHHHHHHHHHHhcC
Q psy355 158 CIQSK--KEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 158 ~L~~~--~~~v~~ka~~~l~~L~~~ 180 (285)
++++. +..+|-|..-++.-.+..
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHcc
Confidence 99975 688988888777655443
No 51
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.32 E-value=3.1e-05 Score=70.41 Aligned_cols=173 Identities=18% Similarity=0.217 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHH
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG----SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT 114 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s----~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~ 114 (285)
-....|+..|..++..-+....-...+.++.++..|.+ ++.+++..|+.+++++.. ++..+..+.+.|+++.|..
T Consensus 120 ~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~ 198 (312)
T PF03224_consen 120 FIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFD 198 (312)
T ss_dssp HHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHH
Confidence 44556777777776554333332223556777777664 566788999999999995 6778999999999999999
Q ss_pred hh------ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCch-HHH
Q psy355 115 SI------EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQ-VKQ 186 (285)
Q Consensus 115 LL------~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~-~~~ 186 (285)
++ .+..+..++..++.++--++- ++.....+...+-++.|+++++.. ..|+.+-+..++.|++...+. ...
T Consensus 199 iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~ 277 (312)
T PF03224_consen 199 ILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIE 277 (312)
T ss_dssp HHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred HHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHH
Confidence 99 444567888899999998877 466677888888999999999975 699999999999999988664 788
Q ss_pred HHHHCCcHHHHHHhcccCCCCCccHHHH
Q psy355 187 VLLSMGMVEQMCVLIDIEDALDTEMNEH 214 (285)
Q Consensus 187 ~l~~~g~v~~L~~lL~~~~~~d~~~~e~ 214 (285)
.++..|+++.+-.+.... =.|+++.+-
T Consensus 278 ~mv~~~~l~~l~~L~~rk-~~Dedl~ed 304 (312)
T PF03224_consen 278 LMVLCGLLKTLQNLSERK-WSDEDLTED 304 (312)
T ss_dssp HHHHH-HHHHHHHHHSS---SSHHHHHH
T ss_pred HHHHccHHHHHHHHhcCC-CCCHHHHHH
Confidence 888888887776655543 246666654
No 52
>KOG3678|consensus
Probab=98.30 E-value=1e-05 Score=75.40 Aligned_cols=160 Identities=14% Similarity=0.206 Sum_probs=134.0
Q ss_pred HHHcCCHHHHHhhhcCCCH--HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355 61 FLKMGGLPVLQPLLEGSDP--ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD 138 (285)
Q Consensus 61 ~~~~Gg~~~Lv~lL~s~~~--~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~ 138 (285)
+..-||+..|++++.+|+. .||..|+++|..|.. ..+.+.+..-| +..++.+-+....+...+..+..|.++-+|
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH 252 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence 3346899999999999875 569999999998874 34567777776 666666666555678899999999999999
Q ss_pred ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHH
Q psy355 139 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLS 217 (285)
Q Consensus 139 ~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~ 217 (285)
+....+.++..||+..++--.+..++.+.+.++.++.|.+-. .-..++.+++..+-+.|..+-.+. |.-+|-+|.-
T Consensus 253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk---Del~R~~ACl 329 (832)
T KOG3678|consen 253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK---DELLRLHACL 329 (832)
T ss_pred hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch---HHHHHHHHHH
Confidence 998889999999999999889999999999999999987654 667889999999999998887777 8888889988
Q ss_pred HHHHHHhcC
Q psy355 218 ALASLIKDS 226 (285)
Q Consensus 218 aL~~l~~~~ 226 (285)
++..|+...
T Consensus 330 AV~vlat~K 338 (832)
T KOG3678|consen 330 AVAVLATNK 338 (832)
T ss_pred HHhhhhhhh
Confidence 888877655
No 53
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.28 E-value=5.8e-05 Score=77.98 Aligned_cols=129 Identities=15% Similarity=0.129 Sum_probs=66.7
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh---------C
Q psy355 68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR---------D 138 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r---------~ 138 (285)
+.|...|+++++.||..|+.+|+.+.. +-.+.|+..|.. ++..+|..|+.+|+.+-. +
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D-~d~~VR~~Av~aL~~~~~~~~l~~~l~D 753 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGD-PDHRVRIEAVRALVSVDDVESVAGAATD 753 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcC-CCHHHHHHHHHHHhcccCcHHHHHHhcC
Confidence 345555666666666666666655432 122345556653 566777777777765410 0
Q ss_pred -ChHhHH----HHHh-----cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCC
Q psy355 139 -NEECLK----EFIK-----RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD 208 (285)
Q Consensus 139 -~~~~~~----~f~~-----~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d 208 (285)
++.... .+.. ...++.|..+++++++.+|..|+.+|..+-... ..+..+...|..+ +
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~---d 820 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRAS---A 820 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCC---C
Confidence 000000 0111 012455556666666666666666665542211 1224566666666 6
Q ss_pred ccHHHHHHHHHHHH
Q psy355 209 TEMNEHLLSALASL 222 (285)
Q Consensus 209 ~~~~e~al~aL~~l 222 (285)
..+|..|+.+|..+
T Consensus 821 ~~VR~~Aa~aL~~l 834 (897)
T PRK13800 821 WQVRQGAARALAGA 834 (897)
T ss_pred hHHHHHHHHHHHhc
Confidence 77777777777655
No 54
>KOG4500|consensus
Probab=98.27 E-value=1.6e-05 Score=73.32 Aligned_cols=164 Identities=11% Similarity=0.092 Sum_probs=124.2
Q ss_pred HHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC------CCHHHHHHHHHHHHHH
Q psy355 62 LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD------SNTTVQVKSLYAVSCL 135 (285)
Q Consensus 62 ~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~------~~~~v~~~a~~ALs~l 135 (285)
+..|.+.+|....+|++.+|-.+.++++||+|-.|.+.+.++.+.|+-..+++.|+.. .+...-+-++.-|+|.
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 3467788888899999999999999999999999999999999999988777777642 1235566778889999
Q ss_pred hhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHH
Q psy355 136 VRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMN 212 (285)
Q Consensus 136 ~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~ 212 (285)
+-++..-+..+++.|.++.|...+.-+ +..+..+......+|++- .........+...+..++++|.+. ..++++
T Consensus 164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~--v~~d~~ 241 (604)
T KOG4500|consen 164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSM--VREDID 241 (604)
T ss_pred hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHh--hccchh
Confidence 999999888999999999888876543 444444444433444331 112334455667788888888875 368899
Q ss_pred HHHHHHHHHHHhcCh
Q psy355 213 EHLLSALASLIKDST 227 (285)
Q Consensus 213 e~al~aL~~l~~~~~ 227 (285)
|.+...|...+.++.
T Consensus 242 eM~feila~~aend~ 256 (604)
T KOG4500|consen 242 EMIFEILAKAAENDL 256 (604)
T ss_pred hHHHHHHHHHhcCcc
Confidence 999999988887764
No 55
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=98.26 E-value=7.5e-06 Score=61.62 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355 81 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEECLKEFI 147 (285)
Q Consensus 81 vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~~~~f~ 147 (285)
+|....++|||++-+|+.+|+.+.+.|++|.+++...- +.++-+|..|+|||-+++.+++.+++.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46678899999999999999999999999999988654 46799999999999999999999986554
No 56
>PTZ00429 beta-adaptin; Provisional
Probab=98.15 E-value=0.0011 Score=66.83 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=107.3
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
.+..|.+-+++++|-+|..|+++++++-. +..-+. +++++.+.+.+ .++-||++|+.|+..+-+.+|. .
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~pe---l 174 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDDMQ---L 174 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCcc---c
Confidence 36778888899999999999999998763 444443 46677888875 7899999999999999887764 3
Q ss_pred HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHH
Q psy355 146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~ 221 (285)
+.+.+-++.|..+|.+.++.|+..|..++..+...+|... -...+.+..|+..|..- +.-.+-..+.+|..
T Consensus 175 v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~---~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 175 FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPEC---NEWGQLYILELLAA 245 (746)
T ss_pred ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHh
Confidence 4455667889999999999999999999999987766432 23345677788777765 55566666666633
No 57
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.12 E-value=7.7e-06 Score=59.55 Aligned_cols=88 Identities=14% Similarity=0.215 Sum_probs=69.4
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHH
Q psy355 109 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVL 188 (285)
Q Consensus 109 l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l 188 (285)
||.|++.|.+++++.+|..|+++|+.+ +.+ ..++.|+.+++++++.+|..|+++++.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~--~~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL--GDP---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC--THH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 688999996568999999999999954 122 23788899999999999999999999772
Q ss_pred HHCCcHHHHHHhcccCCCCCccHHHHHHHHHH
Q psy355 189 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 220 (285)
Q Consensus 189 ~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~ 220 (285)
....++.|..++.++ .+..+|..|..+|.
T Consensus 60 -~~~~~~~L~~~l~~~--~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDD--DDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCC--CcHHHHHHHHhhcC
Confidence 234888999999876 14456888888874
No 58
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.04 E-value=1e-05 Score=53.92 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355 122 TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 177 (285)
Q Consensus 122 ~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L 177 (285)
+.+|..|+|+|++++.+.+...+.+. ...++.|+.+|++++..||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 36899999999999988888776654 67899999999999899999999999875
No 59
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.02 E-value=0.00074 Score=63.62 Aligned_cols=183 Identities=16% Similarity=0.229 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCC--CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGS--DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 116 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~--~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL 116 (285)
+-...++.-|..++...+.-..|.+.+|+++|+.+|+.. +..++=.++-+|--++=+ +.........|.+|.|++++
T Consensus 159 ~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~~i~ 237 (429)
T cd00256 159 DYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKRLSLIQDLSDIL 237 (429)
T ss_pred chHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHhhccccHHHHHHHHH
Confidence 334455667777777777777899999999999999863 456676777777766654 33555667789999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhhCCh----H--h------------------------------------------------
Q psy355 117 EHDSNTTVQVKSLYAVSCLVRDNE----E--C------------------------------------------------ 142 (285)
Q Consensus 117 ~~~~~~~v~~~a~~ALs~l~r~~~----~--~------------------------------------------------ 142 (285)
+....+.|.+-++.++-|++..+. . .
T Consensus 238 k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD 317 (429)
T cd00256 238 KESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFD 317 (429)
T ss_pred HhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 987777888888888888876320 0 0
Q ss_pred --------------------------HHHHHhcC--cHHHHHHhhc-cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCc
Q psy355 143 --------------------------LKEFIKRD--GFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 193 (285)
Q Consensus 143 --------------------------~~~f~~~~--gi~~L~~~L~-~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~ 193 (285)
...|-+.+ .+..|+.+|. ++|+.+..-||+=|+.++...|.-+..+-+.|+
T Consensus 318 ~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~ 397 (429)
T cd00256 318 EYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGG 397 (429)
T ss_pred HHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCc
Confidence 22232222 2345556664 446677777777788888888888888888999
Q ss_pred HHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 194 v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
=..++.++.++ |++++-.||.|+..|+.+
T Consensus 398 K~~vM~Lm~h~---d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 398 KQRVMRLLNHE---DPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHHh
Confidence 89999999999 999999999999888644
No 60
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=98.01 E-value=3.9e-05 Score=57.78 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc--CcHHHHHHHHHHHHHHhcCCchHHHHHHH
Q psy355 124 VQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLS 190 (285)
Q Consensus 124 v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~--~~~~v~~ka~~~l~~L~~~~~~~~~~l~~ 190 (285)
.|...+..|+|++..++..+..+.+.||+++++....- .++-+++.|.|+|.+|+.++++.++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 46778899999999999999999999999999998654 47999999999999999999988776654
No 61
>KOG4646|consensus
Probab=98.00 E-value=8.1e-05 Score=58.61 Aligned_cols=121 Identities=18% Similarity=0.236 Sum_probs=101.3
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHH
Q psy355 74 LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFS 153 (285)
Q Consensus 74 L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~ 153 (285)
-+..+.+-+.+...-|+|.|= +|.+-..+.+.+++..++..|.. +++.++..++.+|+|+|-+ +.+.+-+.+++|+|
T Consensus 26 q~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e-~ne~LvefgIgglCNlC~d-~~n~~~I~ea~g~p 102 (173)
T KOG4646|consen 26 QTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEE-QNELLVEFGIGGLCNLCLD-KTNAKFIREALGLP 102 (173)
T ss_pred HHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhc-ccHHHHHHhHHHHHhhccC-hHHHHHHHHhcCCc
Confidence 345777888888888888884 68888899999999999999996 7889999999999999986 55566777899999
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHH
Q psy355 154 VLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM 197 (285)
Q Consensus 154 ~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L 197 (285)
.++.+++++...+.-.|+.++..|+..+...+..+..--++..+
T Consensus 103 lii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v 146 (173)
T KOG4646|consen 103 LIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTV 146 (173)
T ss_pred eEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHH
Confidence 99999999999999999999999998887777777654444333
No 62
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.99 E-value=1.7e-05 Score=49.11 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=36.1
Q ss_pred chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhh
Q psy355 56 DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ 94 (285)
Q Consensus 56 dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~ 94 (285)
+++..+++.||+++|+++|.+++++++..|+|+|+|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 477889999999999999999999999999999999873
No 63
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.90 E-value=0.00046 Score=56.08 Aligned_cols=128 Identities=15% Similarity=0.285 Sum_probs=107.1
Q ss_pred hHHHHHHcCCHHHHHhhhcCCC------HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC-CHHHHHHHH
Q psy355 57 YANDFLKMGGLPVLQPLLEGSD------PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSL 129 (285)
Q Consensus 57 na~~~~~~Gg~~~Lv~lL~s~~------~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~-~~~v~~~a~ 129 (285)
.|..|++.||++.|++++.++. .++...++.+.-.+...+ .+....+....+...+..+.... +..+...|+
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 4789999999999999998755 478888999998888765 34445677778888888888644 678999999
Q ss_pred HHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHH
Q psy355 130 YAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK 185 (285)
Q Consensus 130 ~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~ 185 (285)
.-|=+++-+++...+.+-+.--++-|+..|+.++..+|.+|..++-.|....++.+
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 99999999888877777777789999999999999999999999999988755443
No 64
>KOG1241|consensus
Probab=97.87 E-value=0.00084 Score=65.98 Aligned_cols=162 Identities=16% Similarity=0.208 Sum_probs=113.0
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
.+|.+-.-+++|+-.-|..|+.+.|.+..+-...+-.-+-.+++|.++++.. +++.-++..+.|+++.++.+.+.....
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhccc
Confidence 3455545678999999999999999999876666666677889999999999 688899999999999999988754322
Q ss_pred -HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCch----H-HHHHHHCCcHHHHH-HhcccC---CCCCccHHHHH
Q psy355 146 -FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ----V-KQVLLSMGMVEQMC-VLIDIE---DALDTEMNEHL 215 (285)
Q Consensus 146 -f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~----~-~~~l~~~g~v~~L~-~lL~~~---~~~d~~~~e~a 215 (285)
..-.+-++.++..|. +.+++-.++||++.+|+..-++ . ...... -+.+.++ .||+.. +-.+..+|..+
T Consensus 444 ~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 444 QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHH
Confidence 222334455555553 4689999999999999843110 0 000000 1222222 333333 12356799999
Q ss_pred HHHHHHHHhcChHHH
Q psy355 216 LSALASLIKDSTEAQ 230 (285)
Q Consensus 216 l~aL~~l~~~~~~~~ 230 (285)
-.+|..+.+.+|+..
T Consensus 522 YeALmElIk~st~~v 536 (859)
T KOG1241|consen 522 YEALMELIKNSTDDV 536 (859)
T ss_pred HHHHHHHHHcCcHHH
Confidence 999999999998644
No 65
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.87 E-value=2.4e-05 Score=60.44 Aligned_cols=87 Identities=23% Similarity=0.327 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHH-HcCCHHHHHhhhcCCCHHHHHHHH
Q psy355 8 FLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFL-KMGGLPVLQPLLEGSDPELRWRAA 86 (285)
Q Consensus 8 ~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~-~~Gg~~~Lv~lL~s~~~~vr~~A~ 86 (285)
|.+.|.+ +..++++.+|..+++|.... +.....-|+.+|.++|.-.++.+.++ +.||=..++.|++|++++||..|+
T Consensus 30 W~ENa~k-f~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL 107 (119)
T PF11698_consen 30 WRENADK-FEENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEAL 107 (119)
T ss_dssp HHHHSGG-GSSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHH
T ss_pred HHHHHHH-HHHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHH
Confidence 5555554 45889999999999996555 34667789999999999988888876 566667889999999999999999
Q ss_pred HHHHHHhhCC
Q psy355 87 ETVADIVQNN 96 (285)
Q Consensus 87 ~~lg~~a~nn 96 (285)
.++..+..+|
T Consensus 108 ~avQklm~~~ 117 (119)
T PF11698_consen 108 LAVQKLMVNN 117 (119)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 9999887654
No 66
>KOG1517|consensus
Probab=97.86 E-value=0.00036 Score=70.55 Aligned_cols=171 Identities=14% Similarity=0.181 Sum_probs=137.7
Q ss_pred cchHHHHHHcCCHHHHHhhhcC---CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHH
Q psy355 55 IDYANDFLKMGGLPVLQPLLEG---SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYA 131 (285)
Q Consensus 55 ~dna~~~~~~Gg~~~Lv~lL~s---~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~A 131 (285)
.....+++|-+|...++..|.. -+++-|+.||.+|+.++.|-+.-|...++.+.+..-+..|..++.+-+|--++-.
T Consensus 544 ~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~ic 623 (1387)
T KOG1517|consen 544 PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCIC 623 (1387)
T ss_pred chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHH
Confidence 4567789999999999998875 3569999999999999999999999999999999989999875567899999999
Q ss_pred HHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC----chHHH------------HHHHCCcH-
Q psy355 132 VSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN----NQVKQ------------VLLSMGMV- 194 (285)
Q Consensus 132 Ls~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~----~~~~~------------~l~~~g~v- 194 (285)
|+.+=.+++.++-.=...+....|+.+|+.+.++||..|.|++..++.+. ++... .-++.-+.
T Consensus 624 LG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~ 703 (1387)
T KOG1517|consen 624 LGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIK 703 (1387)
T ss_pred HHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHh
Confidence 99999999988766667788999999999999999999999999999863 21111 11222222
Q ss_pred --HHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 195 --EQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 195 --~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
..++.+++.. .+-++....-+|..++.++..
T Consensus 704 ~~~~ll~~vsdg---splvr~ev~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 704 GLMSLLALVSDG---SPLVRTEVVVALSHFVVGYVS 736 (1387)
T ss_pred hHHHHHHHHhcc---chHHHHHHHHHHHHHHHhhHH
Confidence 2555666666 777887788888888877754
No 67
>KOG2759|consensus
Probab=97.82 E-value=0.0018 Score=59.79 Aligned_cols=202 Identities=16% Similarity=0.205 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC--CCHHHHHHHHHHHHHHhhCCH
Q psy355 20 VGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNP 97 (285)
Q Consensus 20 ~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s--~~~~vr~~A~~~lg~~a~nn~ 97 (285)
+...-+.-++-+.+.+...+-...+..=|..++.-...--.|+...|+..++..|.| .+-.++=+.+.+|--++= ||
T Consensus 153 e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~ 231 (442)
T KOG2759|consen 153 ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NP 231 (442)
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CH
Confidence 455555555544444433333444444455555444566678889999999997743 556777777777776664 56
Q ss_pred HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH------h-----------------------------
Q psy355 98 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE------C----------------------------- 142 (285)
Q Consensus 98 ~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~------~----------------------------- 142 (285)
...+.+-..+.++.|..+++++..+.|-+-.+..+-|++-..+. .
T Consensus 232 ~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~d 311 (442)
T KOG2759|consen 232 HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDD 311 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHH
Confidence 66677788899999999999876677777777888887765431 1
Q ss_pred ---------------------------------------------HHHHHhcC--cHHHHHHhhccC-cHHHHHHHHHHH
Q psy355 143 ---------------------------------------------LKEFIKRD--GFSVLLRCIQSK-KEKLVIKSCFLI 174 (285)
Q Consensus 143 ---------------------------------------------~~~f~~~~--gi~~L~~~L~~~-~~~v~~ka~~~l 174 (285)
...|.+.+ .+..|+++|+++ |+.+-.-||+=|
T Consensus 312 i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DI 391 (442)
T KOG2759|consen 312 IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDI 391 (442)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhH
Confidence 11111111 334566666654 466777777777
Q ss_pred HHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 175 ACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 175 ~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
+..++..|.-+..+.+-|+=..++++|.++ |++++-+|+.|+..|..+
T Consensus 392 ge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~---d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 392 GEYVRHYPEGKAVVEKYGGKERVMNLLNHE---DPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHhCchHhHHHHHhchHHHHHHHhcCC---CchHHHHHHHHHHHHHhh
Confidence 877788888899999999999999999999 999999999999888754
No 68
>KOG2759|consensus
Probab=97.81 E-value=0.0074 Score=55.92 Aligned_cols=198 Identities=15% Similarity=0.169 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHH-HHH------HcCCHHHHHhhhcCCCHHHHHHHHHHHHHHh
Q psy355 21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYAN-DFL------KMGGLPVLQPLLEGSDPELRWRAAETVADIV 93 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~-~~~------~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a 93 (285)
.+..+..+..++.... ++...-.|--+.++...-.... -|+ +--.+.+.+++|.-.++-+...++++|+-++
T Consensus 64 ~~~v~~fi~LlS~~~k-dd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 64 AQYVKTFINLLSHIDK-DDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHHHhchhhh-HHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 3555555555555443 3444445555555543311111 122 2235889999999999999999999999998
Q ss_pred hCCHHHHHHHHhcCc----HHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHH
Q psy355 94 QNNPFSQNFIIQTDF----LNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLV 167 (285)
Q Consensus 94 ~nn~~~q~~v~~~g~----l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~ 167 (285)
...+. .++.+. ...|-.++.++.+......|+.+|..+.|. ++-+-+|..++|+..++..+.++ ++.+|
T Consensus 143 ~~g~~----~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQ 217 (442)
T KOG2759|consen 143 CFGNC----KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQ 217 (442)
T ss_pred Hhccc----cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHH
Confidence 85442 111111 223334455444556777888999999996 45567899999999999999443 79999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 168 IKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 168 ~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
=..+|++--|+-+ |...+.+...+.++.|..+++.. .-.++...++.++.|++..+|
T Consensus 218 YqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~--~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 218 YQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKES--TKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred HHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCc
Confidence 9999999877654 55668888889999999999875 245677888888999998885
No 69
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.79 E-value=6.7e-05 Score=46.31 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=34.8
Q ss_pred HhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355 141 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC 178 (285)
Q Consensus 141 ~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~ 178 (285)
.....+++.||++.|+.+|++++.+++..|+|+|+||+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35667889999999999999999999999999999986
No 70
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.75 E-value=0.001 Score=61.96 Aligned_cols=185 Identities=14% Similarity=0.129 Sum_probs=136.0
Q ss_pred CCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 36 DQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 36 ~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
..+.|++.||.-+..+++-.+ +......|.+..++.+..+++...|..|..+|+.++--||. .+..+||++.|++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHH
Confidence 346889999999988876533 33445778889999999999999999999999999999986 67889999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-------cH--HHHHHHHHHHHHHhcCCchHHH
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-------KE--KLVIKSCFLIACLCTDNNQVKQ 186 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-------~~--~v~~ka~~~l~~L~~~~~~~~~ 186 (285)
+-. +...+....+.++-.+.- +|...+.+...-.++.++..+.+. +. ..-..+..++..+..+=+...-
T Consensus 156 l~d-~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~ 233 (371)
T PF14664_consen 156 LID-GSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLY 233 (371)
T ss_pred HHh-ccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceee
Confidence 885 344577777777777764 555554444323455555544332 22 3456677888888776443332
Q ss_pred HHHHC-CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355 187 VLLSM-GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA 229 (285)
Q Consensus 187 ~l~~~-g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~ 229 (285)
.-... ..+..|+..|..+ .+++|+..+..+..++.-.+..
T Consensus 234 l~~~~~~~lksLv~~L~~p---~~~ir~~Ildll~dllrik~p~ 274 (371)
T PF14664_consen 234 LSMNDFRGLKSLVDSLRLP---NPEIRKAILDLLFDLLRIKPPS 274 (371)
T ss_pred eecCCchHHHHHHHHHcCC---CHHHHHHHHHHHHHHHCCCCCC
Confidence 22222 5788899999999 9999999999999999877643
No 71
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.00018 Score=68.13 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC
Q psy355 83 WRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK 162 (285)
Q Consensus 83 ~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~ 162 (285)
..++.+|-.+...-...+.-+.++.+..+|+++|+. ++..+.-.+..+|+|.+--..+-+..|+..|.+..|+..+.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 445555666666655666667778899999999996 6667788889999999988888888999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhcCC-chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 163 KEKLVIKSCFLIACLCTDN-NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 163 ~~~v~~ka~~~l~~L~~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
|..+|.+..|.++++.-+. ...+=.++..-.+..++.+...+ +-.+++.++..|.+++-+..
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp---c~~vq~q~lQilrNftc~~~ 548 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP---CFKVQHQVLQILRNFTCDTS 548 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc---ccccHHHHHHHHHhcccccc
Confidence 9999999999999998773 33333455566778888998888 99999999999999986443
No 72
>PF05536 Neurochondrin: Neurochondrin
Probab=97.65 E-value=0.0041 Score=60.79 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=122.7
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH---HHHHhcCcHHHHHHhhccC------CCHHHHHHHHHHHHHHhh
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ---NFIIQTDFLNLLLTSIEHD------SNTTVQVKSLYAVSCLVR 137 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q---~~v~~~g~l~~L~~LL~~~------~~~~v~~~a~~ALs~l~r 137 (285)
+...+.+|++.+.+-|..++-.+..++.+++..+ +.+.+.=+.+-|-+||.+. +....+.-|+.-|++.++
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 5667788999889999999999999999887433 3466766667777888862 235677888899999988
Q ss_pred CChHh--HHHHHhcCcHHHHHHhhccCcH-HHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHH
Q psy355 138 DNEEC--LKEFIKRDGFSVLLRCIQSKKE-KLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEH 214 (285)
Q Consensus 138 ~~~~~--~~~f~~~~gi~~L~~~L~~~~~-~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~ 214 (285)
. |.. -..++ +-+|.|++++.+.+. .+...|..+|..++ ..|.-++.+++.|.++.|+..+.+ .+...+.
T Consensus 87 ~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~----~~~~~E~ 158 (543)
T PF05536_consen 87 D-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN----QSFQMEI 158 (543)
T ss_pred C-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh----CcchHHH
Confidence 3 322 13344 679999999988766 99999999999998 678899999999999999999886 5677899
Q ss_pred HHHHHHHHHhcCh
Q psy355 215 LLSALASLIKDST 227 (285)
Q Consensus 215 al~aL~~l~~~~~ 227 (285)
++..|.+++....
T Consensus 159 Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 159 ALNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887664
No 73
>KOG1062|consensus
Probab=97.65 E-value=0.0064 Score=60.29 Aligned_cols=215 Identities=14% Similarity=0.120 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~ 118 (285)
+-|+.-|.....|=|..|- --++ ...|.+=|+|++.-|+-.|+.++|+++. |+... ...|-.-+++++
T Consensus 86 dKRiGYLaamLlLdE~qdv-llLl----tNslknDL~s~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~ 153 (866)
T KOG1062|consen 86 DKRIGYLAAMLLLDERQDL-LLLL----TNSLKNDLNSSNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQH 153 (866)
T ss_pred HHHHHHHHHHHHhccchHH-HHHH----HHHHHhhccCCCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhC
Confidence 5666667666665554441 1111 2344455778999999999999999993 44332 257888899998
Q ss_pred CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHH
Q psy355 119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC 198 (285)
Q Consensus 119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~ 198 (285)
.++.+|+||+.+.-.++|-.|...+.|+ +....+|...+.-|-.-+..++..+|..+|+...++-+ .++.|+
T Consensus 154 -~~~~irKKA~Lca~r~irK~P~l~e~f~-----~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV 225 (866)
T KOG1062|consen 154 -RDPYIRKKAALCAVRFIRKVPDLVEHFV-----IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLV 225 (866)
T ss_pred -CCHHHHHHHHHHHHHHHHcCchHHHHhh-----HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHH
Confidence 6889999999999999999998887775 44567777777777778888888888888877777765 555555
Q ss_pred Hhccc----C--------CCCCccHHHHHHHHHHHHHhcChHHHh--------------hcccCcccHHHHHHHHHHHcc
Q psy355 199 VLIDI----E--------DALDTEMNEHLLSALASLIKDSTEAQS--------------LCRLEPLNLKFKLNFIKEKHA 252 (285)
Q Consensus 199 ~lL~~----~--------~~~d~~~~e~al~aL~~l~~~~~~~~~--------------~~~~~~~~l~~~l~~~~~~l~ 252 (285)
..|+. . ...||-++-.+|+.|.-+-++.+..-+ .+++-. -..|.+..+.+.
T Consensus 226 ~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~G---nAILYE~V~TI~ 302 (866)
T KOG1062|consen 226 KILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAG---NAILYECVRTIM 302 (866)
T ss_pred HHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccch---hHHHHHHHHHHH
Confidence 55442 2 134566788888888777766654221 112222 234556666665
Q ss_pred ChHhhHHHHHHHHHHHHHhcCCCC
Q psy355 253 GNEVYHKELEHVNSVLTEVFEEDS 276 (285)
Q Consensus 253 ~~~e~~~~~~~~~~il~~~f~~~~ 276 (285)
.-..+..-...+.+||-+|-.-.+
T Consensus 303 ~I~~~~~LrvlainiLgkFL~n~d 326 (866)
T KOG1062|consen 303 DIRSNSGLRVLAINILGKFLLNRD 326 (866)
T ss_pred hccCCchHHHHHHHHHHHHhcCCc
Confidence 555677777889999988876554
No 74
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.64 E-value=0.0001 Score=56.92 Aligned_cols=73 Identities=10% Similarity=0.137 Sum_probs=61.5
Q ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355 107 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 179 (285)
Q Consensus 107 g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~ 179 (285)
.++..|+++|..+.++.+..-||+-|+.++|.+|.....+-+.||-..++++|.++++.||..|..++.-+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3788999999665678888899999999999999987766678888999999999999999999999887754
No 75
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.63 E-value=0.0039 Score=60.41 Aligned_cols=179 Identities=16% Similarity=0.148 Sum_probs=109.0
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
+..++..-+ +++..+..|+..|......-|..++. ++..++.|+.. .+..||+.|+-.|..+|++++.....+
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~~~~v~kv 97 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCED-EDVQIRKQAIKGLPQLCKDNPEHVSKV 97 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHH
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHHHHHhHH
Confidence 344444444 57889999999999999999998876 56779999995 789999999999999999988766655
Q ss_pred HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
. .+|+++|++++..-..-+-.++..|...+| .+.+..+...+.+..+++..+||+++..|..-+..-
T Consensus 98 a-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 98 A-----DVLVQLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp H-----HHHHHHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS
T ss_pred H-----HHHHHHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhC
Confidence 4 588999999887777777777777777665 244555555554211227889999998886544433
Q ss_pred hHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHH
Q psy355 227 TEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLT 269 (285)
Q Consensus 227 ~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~ 269 (285)
+..+. .|.-...+.+.+.++++-. +--.+|.+.+-.+|.
T Consensus 165 ~~~~~---~p~~E~e~~i~~~ikkvL~-DVTaeEF~l~m~lL~ 203 (556)
T PF05918_consen 165 KPELL---TPQKEMEEFIVDEIKKVLQ-DVTAEEFELFMSLLK 203 (556)
T ss_dssp -TTTS------HHHHHHHHHHHHHHCT-T--HHHHHHHHHHHH
T ss_pred cHHHh---hchHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 22111 1222334444444444432 234566666656554
No 76
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.60 E-value=0.015 Score=54.08 Aligned_cols=222 Identities=14% Similarity=0.051 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC--CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s--~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
.+.+..++..+.+++.+.+....+.+.+.--.++..|.. .+..=|.+|++.+-.+..-....+ -+-.|++..++.+
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~~~~vvralvai 116 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAI 116 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHH
Confidence 578889999999999999888899999966677777764 445568999999998876422111 2356889999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHH
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 195 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~ 195 (285)
..+ +++..|.-|+-.|.-++-.+|. -+..+||+.+|++.+..+...+....+.++-++.+. |..++++...--++
T Consensus 117 ae~-~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~-p~tR~yl~~~~dL~ 191 (371)
T PF14664_consen 117 AEH-EDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS-PRTRKYLRPGFDLE 191 (371)
T ss_pred HhC-CchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC-cchhhhhcCCccHH
Confidence 997 5679999999999999998876 477899999999999887777888888888888664 66777766533344
Q ss_pred HHHHhcccC----CCCCc--cHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHH
Q psy355 196 QMCVLIDIE----DALDT--EMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLT 269 (285)
Q Consensus 196 ~L~~lL~~~----~~~d~--~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~ 269 (285)
.+..-+... ...+. +....+..++..+++.-+-.+-.|.+.--++.++++ .++. .+.+..++.-.++-
T Consensus 192 ~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~----~L~~--p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 192 SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVD----SLRL--PNPEIRKAILDLLF 265 (371)
T ss_pred HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHH----HHcC--CCHHHHHHHHHHHH
Confidence 444333322 11123 456778888888888887555444433235544443 5542 23344444444444
Q ss_pred Hhc
Q psy355 270 EVF 272 (285)
Q Consensus 270 ~~f 272 (285)
..|
T Consensus 266 dll 268 (371)
T PF14664_consen 266 DLL 268 (371)
T ss_pred HHH
Confidence 333
No 77
>KOG2023|consensus
Probab=97.58 E-value=0.00084 Score=65.19 Aligned_cols=107 Identities=16% Similarity=0.234 Sum_probs=76.8
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC--ChHhH
Q psy355 68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD--NEECL 143 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~--g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~--~~~~~ 143 (285)
|.|-..|.|+.-.+|+.+.-++|.+|.+ |-+.++.. ..+|.|+.+|+. +.+-||+-+||+||..... ..+..
T Consensus 396 PlLk~~L~~~~W~vrEagvLAlGAIAEG---cM~g~~p~LpeLip~l~~~L~D-KkplVRsITCWTLsRys~wv~~~~~~ 471 (885)
T KOG2023|consen 396 PLLKEHLSSEEWKVREAGVLALGAIAEG---CMQGFVPHLPELIPFLLSLLDD-KKPLVRSITCWTLSRYSKWVVQDSRD 471 (885)
T ss_pred HHHHHHcCcchhhhhhhhHHHHHHHHHH---HhhhcccchHHHHHHHHHHhcc-CccceeeeeeeeHhhhhhhHhcCChH
Confidence 3334456688899999999999999976 55556554 378889999995 7789999999999987542 11122
Q ss_pred HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355 144 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 144 ~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~ 180 (285)
+.|. ..+..|++.+-+++.+||+.||.+++-+-.+
T Consensus 472 ~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 472 EYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred hhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 2232 3344445555567899999999999877543
No 78
>KOG1061|consensus
Probab=97.57 E-value=0.0061 Score=60.21 Aligned_cols=163 Identities=15% Similarity=0.184 Sum_probs=129.5
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC
Q psy355 41 CIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS 120 (285)
Q Consensus 41 ~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~ 120 (285)
+-.+-..++.+.-..|... .+|.++++.+..+-+++...---+.|.+...|..+ .++++.+++=... +
T Consensus 31 ~~a~kkvIa~Mt~G~DvSs------lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d-~ 98 (734)
T KOG1061|consen 31 KDAVKKVIAYMTVGKDVSS------LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCED-P 98 (734)
T ss_pred HHHHHHHHhcCccCcchHh------hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCC-C
Confidence 3334455666666666544 47889999999999999999999999999999644 4567777776664 7
Q ss_pred CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHh
Q psy355 121 NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL 200 (285)
Q Consensus 121 ~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~l 200 (285)
++.+|..|+..++++--+ .... ..+.+|.++++++++-+|+.|+..+..+-.-++ +...+.|+++.|-.+
T Consensus 99 np~iR~lAlrtm~~l~v~--~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~l 168 (734)
T KOG1061|consen 99 NPLIRALALRTMGCLRVD--KITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDL 168 (734)
T ss_pred CHHHHHHHhhceeeEeeh--HHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHH
Confidence 899999999988887432 2221 246799999999999999999999998866554 566788999999999
Q ss_pred cccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 201 IDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 201 L~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
+... ++.+...|+.+|..|....+.
T Consensus 169 l~D~---~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 169 LSDS---NPMVVANALAALSEIHESHPS 193 (734)
T ss_pred hcCC---CchHHHHHHHHHHHHHHhCCC
Confidence 9977 999999999999999988863
No 79
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.54 E-value=0.0012 Score=62.29 Aligned_cols=118 Identities=12% Similarity=-0.015 Sum_probs=79.4
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
+..|+..|.++++.||..++.+||.+- ..++.+.|+.+|++ .++.+|..++.+++.. +
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~-~~p~vR~aal~al~~r--~-------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAA-SEPPGRAIGLAALGAH--R-------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcC-CChHHHHHHHHHHHhh--c--------
Confidence 677777777777778888888887432 12356677777775 5667777776666551 1
Q ss_pred HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHH
Q psy355 147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL 222 (285)
Q Consensus 147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l 222 (285)
..-.+.+..+|++.++.|+..|+.++..+-.. ..++.|...+.+. ++.+|..|+.++..+
T Consensus 146 --~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~---~~~VR~aA~~al~~l 205 (410)
T TIGR02270 146 --HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDS---DPEVRFAALEAGLLA 205 (410)
T ss_pred --cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCC---CHHHHHHHHHHHHHc
Confidence 11234667778888888888888888876432 3555566667777 777777777777554
No 80
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.54 E-value=0.0029 Score=54.44 Aligned_cols=184 Identities=13% Similarity=0.109 Sum_probs=108.8
Q ss_pred cCCCHHHHHHHHHHHHHHhhCC--HHHHHHHHhc--CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC
Q psy355 75 EGSDPELRWRAAETVADIVQNN--PFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD 150 (285)
Q Consensus 75 ~s~~~~vr~~A~~~lg~~a~nn--~~~q~~v~~~--g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~ 150 (285)
.+.+-+.|..|+.-|-.++.++ ......+.+. ..++.+...+.+ ....+.+.|+..++.++.+....+..++ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 5678899999999999999877 2222233221 455677777775 4567999999999999987666665554 34
Q ss_pred cHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCc-HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355 151 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM-VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA 229 (285)
Q Consensus 151 gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~-v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~ 229 (285)
.+|.|+..+.++..-++..|..++..++..-+... .+ ++.+...+.+. ++.+|..++..|..++...+..
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~K---n~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSK---NPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHccch
Confidence 67899999999888999999999999988754111 12 45666677777 9999999999999999888721
Q ss_pred HhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhc
Q psy355 230 QSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVF 272 (285)
Q Consensus 230 ~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f 272 (285)
..... ....+ +.+..-+.+.- .+.+.+..+.+++++..|+
T Consensus 166 ~~~l~-~~~~~-~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 166 SSVLQ-KSAFL-KQLVKALVKLL-SDADPEVREAARECLWALY 205 (228)
T ss_dssp -GGG---HHHH-HHHHHHHHHHH-TSS-HHHHHHHHHHHHHHH
T ss_pred Hhhhc-ccchH-HHHHHHHHHHC-CCCCHHHHHHHHHHHHHHH
Confidence 11111 11112 22333333332 2356677777777666553
No 81
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.53 E-value=0.0043 Score=58.72 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=94.1
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHH-------------HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFS-------------QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS 133 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~-------------q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs 133 (285)
+..|+.+|.+ +++...|++.++-+....+.+ +|.+.. -.+|.|++-.+. .+...|...+.|||
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~-~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKE-ADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhh-cChhhHHHHHHHHH
Confidence 4556666665 888999999999999874444 222222 378889888886 34568999999999
Q ss_pred HHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHH
Q psy355 134 CLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCV 199 (285)
Q Consensus 134 ~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~ 199 (285)
.++++-|...-.=--...+|.|++.|+.++..++..+...+..++.+.++....-++ .+|+.|++
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 999988865421111347899999999999999999999999999988766554332 45565554
No 82
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.52 E-value=0.038 Score=50.20 Aligned_cols=195 Identities=22% Similarity=0.212 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHH---cCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhC---
Q psy355 22 AELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLK---MGGLPVLQPLLEGSDPELRWRAAETVADIVQN--- 95 (285)
Q Consensus 22 ~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~---~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n--- 95 (285)
+.+++++.-+.+.. ...|..+|..+....... +..+|+. .-.+..+.+.++.+..+-+..|+++++-++-.
T Consensus 43 ~~L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~-~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 43 DKLKEAIDLLTEKS--SSTREAALEALIRALSSR-YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 45788888887665 467888888888876442 2334442 22456777888888877888899999887532
Q ss_pred CHHHHHHHHhcCcHHHHHHhhccCC-CHHHHHHHHHHHHHHhh--C-ChHhHHHHHhcCcHH--HHHHhhcc--------
Q psy355 96 NPFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSLYAVSCLVR--D-NEECLKEFIKRDGFS--VLLRCIQS-------- 161 (285)
Q Consensus 96 n~~~q~~v~~~g~l~~L~~LL~~~~-~~~v~~~a~~ALs~l~r--~-~~~~~~~f~~~~gi~--~L~~~L~~-------- 161 (285)
.+... .+++ ...|+|.+.+...+ ...+|..++.||+-++. + .+......+ ..+. .....+++
T Consensus 120 g~~~~-ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 120 GEDSE-EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred CccHH-HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCccccc
Confidence 23333 3333 48888988887532 34677777777775533 2 222222111 1112 11111221
Q ss_pred --CcHHHHHHHHHHHHHHhcCCchH-HHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 162 --KKEKLVIKSCFLIACLCTDNNQV-KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 162 --~~~~v~~ka~~~l~~L~~~~~~~-~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+++.+...|..+.+-|++.-|.. ..... ...++.|+.+|.++ +.++|-.|-.+|.-|.....
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~---d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD---DVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhh
Confidence 23678888877777777664441 22222 35789999999999 99999999999988876654
No 83
>KOG3678|consensus
Probab=97.51 E-value=0.0038 Score=58.62 Aligned_cols=175 Identities=15% Similarity=0.254 Sum_probs=131.7
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNF 102 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn~~~q~~ 102 (285)
+...++.+..|+.....+..+-..|+.+... .|-..+...| +..++.+-+ ...++++...+.+|+++-......-+.
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4456667777776557788888777776532 4555666666 666666544 477899999999999999988777778
Q ss_pred HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC-ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC
Q psy355 103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD-NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 181 (285)
Q Consensus 103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~-~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~ 181 (285)
++..|++..++--++. .++.+-+.++.||+|++-+ ....+..+++......|.-+-.+.|.-+|-.||.+++-|++..
T Consensus 260 Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~K 338 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNK 338 (832)
T ss_pred HHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhh
Confidence 9999999999888886 5689999999999998754 4556777888888888888888889999999999999887753
Q ss_pred chHHHHHHHCCc---HHHHHHhcc
Q psy355 182 NQVKQVLLSMGM---VEQMCVLID 202 (285)
Q Consensus 182 ~~~~~~l~~~g~---v~~L~~lL~ 202 (285)
++-..+-..|. |++++..+.
T Consensus 339 -E~E~~VrkS~TlaLVEPlva~~D 361 (832)
T KOG3678|consen 339 -EVEREVRKSGTLALVEPLVASLD 361 (832)
T ss_pred -hhhHHHhhccchhhhhhhhhccC
Confidence 44444545553 455555544
No 84
>KOG4413|consensus
Probab=97.51 E-value=0.0029 Score=56.99 Aligned_cols=154 Identities=13% Similarity=0.169 Sum_probs=120.4
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH--HHHH--HHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNP--FSQN--FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC 142 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~--~~q~--~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~ 142 (285)
.|.|-.=|.+++..|+..|+..||.+..|.+ .+.. .+++.|.+|.++..+-. .+.+|.+.|.-.|+.|++ .|.+
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg-eddeVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG-EDDEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC-CcHHHHHHHHHHHHHHHh-cHHH
Confidence 3445555779999999999999999998876 2332 35689999999999986 678999999999999988 6888
Q ss_pred HHHHHhcCcHHHH--HHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHH
Q psy355 143 LKEFIKRDGFSVL--LRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 220 (285)
Q Consensus 143 ~~~f~~~~gi~~L--~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~ 220 (285)
...+...+-...+ .++-...+.-+|.+...+|..+.+-.|....+.-..|.+..|..-|+.. .|.-++..++....
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt--eDtLVianciElvt 239 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT--EDTLVIANCIELVT 239 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC--cceeehhhHHHHHH
Confidence 8888776655433 3443344556677778888888888899999999999999998888874 27777888887777
Q ss_pred HHHh
Q psy355 221 SLIK 224 (285)
Q Consensus 221 ~l~~ 224 (285)
.++.
T Consensus 240 eLae 243 (524)
T KOG4413|consen 240 ELAE 243 (524)
T ss_pred HHHH
Confidence 7663
No 85
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.00034 Score=66.40 Aligned_cols=163 Identities=10% Similarity=0.100 Sum_probs=124.8
Q ss_pred HHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355 61 FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 61 ~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~ 140 (285)
+.+.....+|+++|..|+.-|...+...|+|.+-.-...+..+++.|.+..|++++.+ ++.++|++..|.+-.+..|+.
T Consensus 427 L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s-KDdaLqans~wvlrHlmyncq 505 (743)
T COG5369 427 LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS-KDDALQANSEWVLRHLMYNCQ 505 (743)
T ss_pred ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc-chhhhhhcchhhhhhhhhcCc
Confidence 3344467889999999999999999999999988777789999999999999999996 788999999999999998875
Q ss_pred Hh-HHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC---chHHHHHHHCC----cHHHHHHhcccCCCCCccHH
Q psy355 141 EC-LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN---NQVKQVLLSMG----MVEQMCVLIDIEDALDTEMN 212 (285)
Q Consensus 141 ~~-~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~---~~~~~~l~~~g----~v~~L~~lL~~~~~~d~~~~ 212 (285)
.. +-.|+...|...++.....++.++|.....++.|++-.. ...++.+++.. ..+.|+.-+... ++-..
T Consensus 506 ~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~---np~~i 582 (743)
T COG5369 506 KNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEEN---NPMEI 582 (743)
T ss_pred chhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhc---Cchhh
Confidence 54 335888899999999999999999999999999997631 22222222221 334555655554 44444
Q ss_pred HHHHHHHHHHHhcCh
Q psy355 213 EHLLSALASLIKDST 227 (285)
Q Consensus 213 e~al~aL~~l~~~~~ 227 (285)
+..+..|.+++..+.
T Consensus 583 ~~~~yilv~~aa~d~ 597 (743)
T COG5369 583 LEGCYILVRNAACDD 597 (743)
T ss_pred hhhHHHHHHHHhccc
Confidence 444666766665553
No 86
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.0057 Score=61.14 Aligned_cols=163 Identities=15% Similarity=0.182 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHH-HhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355 38 KDICIGALDNLS-DYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 116 (285)
Q Consensus 38 ~~~~~~al~~L~-~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL 116 (285)
+..+..|+..+. .+...-|...- +|-+++...+.+.+++.-.--=+-+.++++|..+ ++ +++.+.+=+
T Consensus 33 ~~~kidAmK~iIa~M~~G~dmssL------f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lL---avNti~kDl 101 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGEDMSSL------FPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LL---AVNTIQKDL 101 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCChHHH------HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HH---HHHHHHhhc
Confidence 556666665443 34444443332 5677777778899999888888888999998432 22 467777778
Q ss_pred ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355 117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 196 (285)
Q Consensus 117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~ 196 (285)
.+ +++.+|..|+.++|.+ + . ..++ ...++++.+++.++++.||+.|+.++..+-+-++ ....+.|.+..
T Consensus 102 ~d-~N~~iR~~AlR~ls~l-~--~---~el~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~ 170 (757)
T COG5096 102 QD-PNEEIRGFALRTLSLL-R--V---KELL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDI 170 (757)
T ss_pred cC-CCHHHHHHHHHHHHhc-C--h---HHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHH
Confidence 85 7899999999999986 2 1 2233 2357899999999999999999999999987655 45667789999
Q ss_pred HHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 197 MCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 197 L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
+..++... |+.+...|+.+|..+-..
T Consensus 171 l~~l~~D~---dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADS---DPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCC---CchHHHHHHHHHHHhchh
Confidence 99999888 999999999988777544
No 87
>KOG0213|consensus
Probab=97.45 E-value=0.00048 Score=67.55 Aligned_cols=148 Identities=12% Similarity=0.119 Sum_probs=104.8
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC------ChH
Q psy355 68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD------NEE 141 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~------~~~ 141 (285)
..++..|+++++.+|.+|+..++.++---..|++.-.=...--.|...|.. ..+++--..+.||.+|+.- .|+
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~pP 880 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMTPP 880 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccCCC
Confidence 345567889999999999999999986444444332211122235667765 5677777777777776543 233
Q ss_pred hHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHH
Q psy355 142 CLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221 (285)
Q Consensus 142 ~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~ 221 (285)
. .+.+|.|..+|++.+.|++....-++..++..+|+....=-=+.++--|+.+|++. ...+|..|..+++.
T Consensus 881 i------~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah---kK~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 881 I------KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH---KKEIRRAAVNTFGY 951 (1172)
T ss_pred h------hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhH
Confidence 2 35678999999999999999999999999998875432222223666778888887 88888888888888
Q ss_pred HHhc
Q psy355 222 LIKD 225 (285)
Q Consensus 222 l~~~ 225 (285)
|++.
T Consensus 952 Iaka 955 (1172)
T KOG0213|consen 952 IAKA 955 (1172)
T ss_pred HHHh
Confidence 8754
No 88
>KOG1824|consensus
Probab=97.45 E-value=0.0033 Score=63.31 Aligned_cols=191 Identities=14% Similarity=0.123 Sum_probs=126.2
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHH-HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHH----
Q psy355 25 EKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLP-VLQPLLEGSDPELRWRAAETVADIVQNNPFS---- 99 (285)
Q Consensus 25 k~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~-~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~---- 99 (285)
.+.+..+.++..++..++-|+-.|.++-...| .-...+++ .++..++||+.+|+..|+.+||+++.+|-..
T Consensus 820 ~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~----~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpf 895 (1233)
T KOG1824|consen 820 TKLIQDLQSPKSSDSIKVFALLSLGELGRRKD----LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPF 895 (1233)
T ss_pred HHHHHHHhCCCCchhHHHHHHhhhhhhccCCC----CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHH
Confidence 34444555566667788888877777654433 12222343 6778999999999999999999999865321
Q ss_pred ----------HHHHH---------h------cCcHHHHHHhhcc---CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc
Q psy355 100 ----------QNFII---------Q------TDFLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG 151 (285)
Q Consensus 100 ----------q~~v~---------~------~g~l~~L~~LL~~---~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g 151 (285)
+++++ . .-.++.+|.+|.. ...+..|.-.+-+|+.++-.+|.. .
T Consensus 896 il~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------L 967 (1233)
T KOG1824|consen 896 ILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------L 967 (1233)
T ss_pred HHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------H
Confidence 11110 0 1123334443332 012234444444444444443331 3
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355 152 FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS 231 (285)
Q Consensus 152 i~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~ 231 (285)
+|.|-..+.++.+..|.-+..++....+..|.-.+.+.+ ..+..+..+++.+ |..+|..|+.++-..+.+.|..++
T Consensus 968 lpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp---Dl~VrrvaLvv~nSaahNKpslIr 1043 (1233)
T KOG1824|consen 968 LPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP---DLEVRRVALVVLNSAAHNKPSLIR 1043 (1233)
T ss_pred HHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC---chhHHHHHHHHHHHHHccCHhHHH
Confidence 567777888888999999999999888887766666664 4677788899999 999999999999999988886554
No 89
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.42 E-value=0.0018 Score=59.20 Aligned_cols=138 Identities=18% Similarity=0.297 Sum_probs=97.3
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC------
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN------ 139 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~------ 139 (285)
.++.+..+|.++++.||..|+.+||.+- +|. .+|.|+.++..+.+..+|..|.++|+.+--..
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~---------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~ 143 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAADALGELG--DPE---------AVPPLVELLENDENEGVRAAAARALGKLGDERALDPLL 143 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHH
Confidence 4677778888888888888888777643 332 67888888886577888888888888762211
Q ss_pred ------h----------H---hH----HHHH---hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCc
Q psy355 140 ------E----------E---CL----KEFI---KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 193 (285)
Q Consensus 140 ------~----------~---~~----~~f~---~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~ 193 (285)
. . .. .... +...++.+...+.+.+..+|..|+.++..+.... ..+
T Consensus 144 ~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~ 214 (335)
T COG1413 144 EALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEA 214 (335)
T ss_pred HHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhH
Confidence 0 0 11 1111 2235678888898888999999999999886654 345
Q ss_pred HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 194 v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
.+.+...+..+ +..++..++.+|..+-...
T Consensus 215 ~~~l~~~~~~~---~~~vr~~~~~~l~~~~~~~ 244 (335)
T COG1413 215 ADLLVKALSDE---SLEVRKAALLALGEIGDEE 244 (335)
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHhcccCcch
Confidence 57777888877 8888888888776654333
No 90
>KOG2023|consensus
Probab=97.42 E-value=0.0013 Score=63.98 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=105.6
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH-HHh---
Q psy355 73 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE-FIK--- 148 (285)
Q Consensus 73 lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~-f~~--- 148 (285)
.|...++-||.-.-.+|.+++.... .|.+ -.++|.|..+|.+ ++.....-|..||+.|+.+++.-.+. +..
T Consensus 98 ~lgd~~~lIr~tvGivITTI~s~~~-~~~w---pelLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl 172 (885)
T KOG2023|consen 98 GLGDASPLIRATVGIVITTIASTGG-LQHW---PELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVLTRPL 172 (885)
T ss_pred hccCchHHHHhhhhheeeeeecccc-cccc---hhHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcccCch
Confidence 3344556666666666666664322 2333 4589999999997 56789999999999999886554332 111
Q ss_pred cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 149 ~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
.--+|.++++.+++++++|..|..++..+.-..+...-.-+ ..+++.+..+-... ++.+|..+..+|..|+..-|+
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~i-D~Fle~lFalanD~---~~eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHI-DKFLEILFALANDE---DPEVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHH-HHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHhcHH
Confidence 12468889999999999999999999877655443222222 24677777776666 899999999999999988876
Q ss_pred HH
Q psy355 229 AQ 230 (285)
Q Consensus 229 ~~ 230 (285)
.+
T Consensus 249 kl 250 (885)
T KOG2023|consen 249 KL 250 (885)
T ss_pred hc
Confidence 43
No 91
>KOG4646|consensus
Probab=97.41 E-value=0.0056 Score=48.43 Aligned_cols=108 Identities=11% Similarity=0.062 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 117 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~ 117 (285)
.+.+...+.+|+.+.-+.-|=.-+..+.++..++..|..++..+...+.-.|+|+|- .+.....+.+.+++|..+..++
T Consensus 31 ~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~~ls 109 (173)
T KOG4646|consen 31 IEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIFVLS 109 (173)
T ss_pred HHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEeecC
Confidence 467888888999998887777888999999999999999999999999999999995 5778889999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355 118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFI 147 (285)
Q Consensus 118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~ 147 (285)
+ +...+.-.|+.++--++-+...-...+.
T Consensus 110 s-p~e~tv~sa~~~l~~l~~~~Rt~r~ell 138 (173)
T KOG4646|consen 110 S-PPEITVHSAALFLQLLEFGERTERDELL 138 (173)
T ss_pred C-ChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence 6 5566777777888777776655444443
No 92
>KOG1222|consensus
Probab=97.39 E-value=0.024 Score=53.67 Aligned_cols=208 Identities=13% Similarity=0.152 Sum_probs=145.2
Q ss_pred HHHHHhhcCcchHHHHHHcCCHHHHHh-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHH
Q psy355 46 DNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTV 124 (285)
Q Consensus 46 ~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v 124 (285)
.-...++-+..||.-++.-.|+..|+. -+++.++-+ ..++.|+.|.....|..|++ .+..|...++.+.+++.
T Consensus 448 a~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F 521 (791)
T KOG1222|consen 448 ALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESF 521 (791)
T ss_pred HHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHH
Confidence 334566777788999999889999987 578877754 56888999988878888877 57788888888778889
Q ss_pred HHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcc
Q psy355 125 QVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLID 202 (285)
Q Consensus 125 ~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~ 202 (285)
-..++..++|+.--.-+-.+.+...+.+|.+-..|+.+ ...++-...-+++..+. +......+...|+|+.|+.+|+
T Consensus 522 ~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~ 600 (791)
T KOG1222|consen 522 GLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQ 600 (791)
T ss_pred HHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHH
Confidence 99999999998764333333344568899998888864 35566666666665544 3456667778899999999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHhcChH---HHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHh
Q psy355 203 IEDALDTEMNEHLLSALASLIKDSTE---AQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEV 271 (285)
Q Consensus 203 ~~~~~d~~~~e~al~aL~~l~~~~~~---~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~ 271 (285)
.. -.|.++.-..+.....++.+... ...+...+ ..+. .+. |+.|.++.+.|.+.+...
T Consensus 601 a~-QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~-AylI--------DLM-HDkN~eiRkVCDn~LdIi 661 (791)
T KOG1222|consen 601 AC-QEDDEFVVQIIYVFLQFLKHELTRRLMIKETALG-AYLI--------DLM-HDKNAEIRKVCDNALDII 661 (791)
T ss_pred hh-cccchHHHHHHHHHHHHHHHHHHHHHHHhhccch-HHHH--------HHH-hcccHHHHHHHHHHHHHH
Confidence 75 23667778888888888877321 11222111 1222 333 556667766666666544
No 93
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.32 E-value=0.0023 Score=47.94 Aligned_cols=94 Identities=11% Similarity=0.263 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC-chHHHHHHHCCcHHHHHHhcc
Q psy355 124 VQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-NQVKQVLLSMGMVEQMCVLID 202 (285)
Q Consensus 124 v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~-~~~~~~l~~~g~v~~L~~lL~ 202 (285)
.|+-++.+|+.++.+-+....... .-.+++++.++.+.+.++|--||.++++++... ......+ ..+++.|++++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHc
Confidence 367788999998887666554444 457899999999999999999999999998652 2222222 357788999988
Q ss_pred cCCCCCccHHHHHHHHHHHHHh
Q psy355 203 IEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 203 ~~~~~d~~~~e~al~aL~~l~~ 224 (285)
.+ ++.++..| ..|-++++
T Consensus 79 D~---d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DP---DENVRSAA-ELLDRLLK 96 (97)
T ss_pred CC---chhHHHHH-HHHHHHhc
Confidence 87 88877665 66666654
No 94
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.24 E-value=0.068 Score=44.43 Aligned_cols=95 Identities=19% Similarity=0.251 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHH
Q psy355 78 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLR 157 (285)
Q Consensus 78 ~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~ 157 (285)
+|.||..++.++|-++..-|..-+ ..+|.+...|.+ +++.||+.|+..|+.++....-..+ ..++..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHH
Confidence 588999999999999988775433 368999999995 7899999999999999875322111 112367788
Q ss_pred hhccCcHHHHHHHHHHHHHHhcC-Cc
Q psy355 158 CIQSKKEKLVIKSCFLIACLCTD-NN 182 (285)
Q Consensus 158 ~L~~~~~~v~~ka~~~l~~L~~~-~~ 182 (285)
++.++++.++.-|..++..+... +|
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~~~ 96 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKRNP 96 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhccc
Confidence 89999999999999999998776 44
No 95
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.23 E-value=0.042 Score=51.85 Aligned_cols=88 Identities=20% Similarity=0.161 Sum_probs=66.2
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
..+.|+.+|+++++.+|..++.++|. ......+.|..+|++ .++.|+..|+.+|+.+-+.
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~------------r~~~~~~~L~~~L~d-~d~~Vra~A~raLG~l~~~------- 177 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGA------------HRHDPGPALEAALTH-EDALVRAAALRALGELPRR------- 177 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh------------hccChHHHHHHHhcC-CCHHHHHHHHHHHHhhccc-------
Confidence 46788889999999999888888876 112356678888874 6789999999999886432
Q ss_pred HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355 146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 177 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L 177 (285)
..++.|...+.+.++.||..|++.+.-+
T Consensus 178 ----~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 178 ----LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ----cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 2344566778888899998888887654
No 96
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.22 E-value=0.00082 Score=64.80 Aligned_cols=152 Identities=13% Similarity=0.177 Sum_probs=102.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH--HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-H
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ--NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-L 143 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q--~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-~ 143 (285)
+..++++|+|+.|.+|.+|+...|.++.--..|. ..+.+.|. .|..-|.. ..+++--..+.||.+|...+.-. .
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge-~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGE-DYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCc-ccHHHHHHHHHHHHHHhhhhccccc
Confidence 3455678999999999999999999875222221 12223232 24455554 46777777777777775432110 0
Q ss_pred HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 144 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 144 ~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
+-= -.|.+|.|..+|++...|++....-++.-+|...|+....=-=+.++-.|+.+|++. +..+|..|..+++.|.
T Consensus 683 qpP-i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~---nKeiRR~A~~tfG~Is 758 (975)
T COG5181 683 QPP-ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW---NKEIRRNATETFGCIS 758 (975)
T ss_pred CCc-hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh---hHHHHHhhhhhhhhHH
Confidence 000 146789999999999999999999999999988775321111123566778888888 8888888888887776
Q ss_pred hc
Q psy355 224 KD 225 (285)
Q Consensus 224 ~~ 225 (285)
..
T Consensus 759 ~a 760 (975)
T COG5181 759 RA 760 (975)
T ss_pred hh
Confidence 53
No 97
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.17 E-value=0.013 Score=56.08 Aligned_cols=178 Identities=13% Similarity=0.150 Sum_probs=110.6
Q ss_pred HHHHHHHhhcCcchHHHHHHcCCHHHHHhhh----------cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHH
Q psy355 44 ALDNLSDYVCSIDYANDFLKMGGLPVLQPLL----------EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 113 (285)
Q Consensus 44 al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL----------~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~ 113 (285)
+|..|.-+..+..++..+..-.|+..|.++= ..+++.+...|+++|+|+.=++|..|+.+++.|..+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 3566666777777777766666677666643 457899999999999999999999999999999999999
Q ss_pred HhhccCC----CHHHHHHHHHHHHHHhhCChHhHHHHHh-cCcHHHHHHhhcc-----------------CcHHHHHHHH
Q psy355 114 TSIEHDS----NTTVQVKSLYAVSCLVRDNEECLKEFIK-RDGFSVLLRCIQS-----------------KKEKLVIKSC 171 (285)
Q Consensus 114 ~LL~~~~----~~~v~~~a~~ALs~l~r~~~~~~~~f~~-~~gi~~L~~~L~~-----------------~~~~v~~ka~ 171 (285)
..|+... +..+.--.+.-|==++...+.....+++ .+|+..|+..|.. .+.....++.
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 9998742 2233322111111122334445555554 5788877776542 1344566777
Q ss_pred HHHHHHhcCCchHHHHHHHCCcHHHHHHhcc------cCCCCCccHHHHHHHHHHHH
Q psy355 172 FLIACLCTDNNQVKQVLLSMGMVEQMCVLID------IEDALDTEMNEHLLSALASL 222 (285)
Q Consensus 172 ~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~------~~~~~d~~~~e~al~aL~~l 222 (285)
-++.|++...+.... -...+.++.++.+|. .++........++..+|.++
T Consensus 161 KllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 161 KLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred HHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 777777765443222 011233333333322 11122345677777777776
No 98
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.17 E-value=0.0059 Score=45.72 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhCCHHH-HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc
Q psy355 82 RWRAAETVADIVQNNPFS-QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ 160 (285)
Q Consensus 82 r~~A~~~lg~~a~nn~~~-q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~ 160 (285)
|..++..|+.++..-+.. .+.+ .-.+|+++..+.. ++..||..||.+|.++++......-.+. ...+..|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D-~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDD-QDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 556677777776655443 2222 3489999999995 7899999999999999987554332222 357788899999
Q ss_pred cCcHHHHHHHHHHHHHH
Q psy355 161 SKKEKLVIKSCFLIACL 177 (285)
Q Consensus 161 ~~~~~v~~ka~~~l~~L 177 (285)
++++.||.-|. ++-.+
T Consensus 79 D~d~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 79 DPDENVRSAAE-LLDRL 94 (97)
T ss_pred CCchhHHHHHH-HHHHH
Confidence 99999987664 44444
No 99
>KOG1059|consensus
Probab=97.14 E-value=0.016 Score=56.96 Aligned_cols=153 Identities=14% Similarity=0.188 Sum_probs=99.8
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH--------HHh--cC-cHHHHHHhhcc--CCCHHHHHHHHHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF--------IIQ--TD-FLNLLLTSIEH--DSNTTVQVKSLYAV 132 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~--------v~~--~g-~l~~L~~LL~~--~~~~~v~~~a~~AL 132 (285)
.+|.|+.=|..|+|.|+..|..+|+.+|.-||..--. +.. ++ ++=.+++|+.. .-.+.+.+|.+--|
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLiepl 261 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPI 261 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHH
Confidence 5888888899999999999999999999999853110 000 01 22223333322 12345666666666
Q ss_pred HHHhhCChHh------HHHHHh----cCc----------HHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCC
Q psy355 133 SCLVRDNEEC------LKEFIK----RDG----------FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 192 (285)
Q Consensus 133 s~l~r~~~~~------~~~f~~----~~g----------i~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g 192 (285)
.++++.+..- +..++. .|+ ++.|-.++.++|+.++==++.+++.++..+|...+..-
T Consensus 262 t~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k--- 338 (877)
T KOG1059|consen 262 TELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK--- 338 (877)
T ss_pred HHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH---
Confidence 6666543321 122221 121 34555566677888888888888888877776554433
Q ss_pred cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 193 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 193 ~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+.++.+|... |..+|-.|+..|..++...
T Consensus 339 --dlIlrcL~Dk---D~SIRlrALdLl~gmVskk 367 (877)
T KOG1059|consen 339 --DLILRCLDDK---DESIRLRALDLLYGMVSKK 367 (877)
T ss_pred --HHHHHHhccC---CchhHHHHHHHHHHHhhhh
Confidence 4567888888 9999999999998887554
No 100
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.11 E-value=0.016 Score=47.13 Aligned_cols=128 Identities=13% Similarity=0.198 Sum_probs=97.2
Q ss_pred HHHHHHhcCcHHHHHHhhccCCC-----HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHH
Q psy355 99 SQNFIIQTDFLNLLLTSIEHDSN-----TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSC 171 (285)
Q Consensus 99 ~q~~v~~~g~l~~L~~LL~~~~~-----~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~ 171 (285)
..+.|++.||++.|++++.++.. ..+-..++.|...+..+..-..+ .+...-+..++..+... +..+.+.|.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHH
Confidence 35678999999999999997552 35667777777777765443332 22233344555555543 689999999
Q ss_pred HHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355 172 FLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230 (285)
Q Consensus 172 ~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~ 230 (285)
..+-+++.+.+.....+.+.=-++.|+..|..+ +.+++..++..+-+|....++..
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~---~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVS---NQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcCChHH
Confidence 999999998887777777766789999999998 99999999999999998887543
No 101
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.09 E-value=0.00095 Score=38.90 Aligned_cols=29 Identities=41% Similarity=0.668 Sum_probs=26.0
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhC
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQN 95 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n 95 (285)
+|.+++++++++++||..|+++||.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999864
No 102
>KOG2259|consensus
Probab=97.09 E-value=0.0058 Score=59.48 Aligned_cols=179 Identities=11% Similarity=0.044 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCC--------------HHHHHhhhcCCCHHHHHHH---HHHHHHHh--hCCHHH
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGG--------------LPVLQPLLEGSDPELRWRA---AETVADIV--QNNPFS 99 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg--------------~~~Lv~lL~s~~~~vr~~A---~~~lg~~a--~nn~~~ 99 (285)
.++..++.-|.++..+-|.-..-....| +...++++..++..||..| .|++||.. .-....
T Consensus 194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 4555666668888877665422222223 5677888888999999988 45556655 111111
Q ss_pred HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-------------------------------------
Q psy355 100 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC------------------------------------- 142 (285)
Q Consensus 100 q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~------------------------------------- 142 (285)
.+.=..-.++..+...++. -+..||+.|.-+|+.+-.-+..-
T Consensus 274 ~e~kl~D~aF~~vC~~v~D-~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRD-RSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhHHHHHHHHHHHHhc-CceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 1111122356666666663 55678888877776653221111
Q ss_pred -------------HHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCc
Q psy355 143 -------------LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT 209 (285)
Q Consensus 143 -------------~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~ 209 (285)
...+|..|.-..+++.|.+.-..||+.|+..++.|+.+.|.+... .+.-|+.+++.. ..
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE---~~ 424 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDE---IE 424 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccH---HH
Confidence 112334444567777787777899999999999999988866533 567888998887 88
Q ss_pred cHHHHHHHHHHHHHhcC
Q psy355 210 EMNEHLLSALASLIKDS 226 (285)
Q Consensus 210 ~~~e~al~aL~~l~~~~ 226 (285)
++|.+|+.+|..|..+-
T Consensus 425 ~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 103
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.09 E-value=0.11 Score=49.07 Aligned_cols=198 Identities=16% Similarity=0.208 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhh-cCCCHHHHHHHHHHH-----HH
Q psy355 18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL-EGSDPELRWRAAETV-----AD 91 (285)
Q Consensus 18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL-~s~~~~vr~~A~~~l-----g~ 91 (285)
++..+.+.+.+....+... ...+..++..+.-++.-......+. ..+..+..-+ ....+..+..+..++ |-
T Consensus 185 ~~~~~ll~~l~~~~~~~~~-~~~~~~~~~~la~LvNK~~~~~~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 185 PDLEELLQSLLNLALSSED-EFSRLAALQLLASLVNKWPDDDDLD--EFLDSLLQSISSSEDSELRPQALEILIWITKAL 261 (415)
T ss_pred cCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCCChhhHH--HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence 3445566666666655554 5677888888887775532222111 1122222222 234444455555544 34
Q ss_pred HhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-------------HHHHHhcCcHHHHHHh
Q psy355 92 IVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-------------LKEFIKRDGFSVLLRC 158 (285)
Q Consensus 92 ~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-------------~~~f~~~~gi~~L~~~ 158 (285)
+..|+|...+ .+..|+.+|.+ +.+...|+.+++-++.+.+.. .|.|. .--+|.|++.
T Consensus 262 v~R~~~~~~~------~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~ 331 (415)
T PF12460_consen 262 VMRGHPLATE------LLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEG 331 (415)
T ss_pred HHcCCchHHH------HHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHH
Confidence 5566765444 46678999985 567888889998888773332 22232 2456788888
Q ss_pred hccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355 159 IQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS 231 (285)
Q Consensus 159 L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~ 231 (285)
.+..+...|.....++++++.+-|...-.-.=..++|.|++-|..+ |.+++..++.+|..++...++.+.
T Consensus 332 ~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~---~~~v~~s~L~tL~~~l~~~~~~i~ 401 (415)
T PF12460_consen 332 FKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP---DADVLLSSLETLKMILEEAPELIS 401 (415)
T ss_pred HhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHcCHHHHH
Confidence 8877777888889999999998763321111124778899999988 999999999999999999976554
No 104
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.98 E-value=0.02 Score=47.66 Aligned_cols=95 Identities=14% Similarity=0.261 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH-HHHHH
Q psy355 121 NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV-EQMCV 199 (285)
Q Consensus 121 ~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v-~~L~~ 199 (285)
++.+|..++-+++-++.-+|...+.+ ++.+...|+++++.+|+.|..++++|..++.-- -.|-+ ..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~-----~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPY-----LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhH-----HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-----ehhhhhHHHHH
Confidence 36899999999999998888766544 688899999999999999999999998875311 12333 67778
Q ss_pred hcccCCCCCccHHHHHHHHHHHHHhc-ChH
Q psy355 200 LIDIEDALDTEMNEHLLSALASLIKD-STE 228 (285)
Q Consensus 200 lL~~~~~~d~~~~e~al~aL~~l~~~-~~~ 228 (285)
+|..+ ++.++..|...+..+... +|.
T Consensus 71 ~l~D~---~~~Ir~~A~~~~~e~~~~~~~~ 97 (178)
T PF12717_consen 71 LLVDE---NPEIRSLARSFFSELLKKRNPN 97 (178)
T ss_pred HHcCC---CHHHHHHHHHHHHHHHHhccch
Confidence 88877 999999999999999988 554
No 105
>KOG1789|consensus
Probab=96.95 E-value=0.028 Score=57.66 Aligned_cols=138 Identities=22% Similarity=0.283 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhhcC-cchHHHH----HHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHH
Q psy355 39 DICIGALDNLSDYVCS-IDYANDF----LKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL 112 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~-~dna~~~----~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L 112 (285)
+...-+|.+|..++.- .|-|..| .-+|-++.+..+|.+ .++.++..|+.+|..+.. |..|-..+...|.+-.|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence 3455678888887644 5777665 347888888888875 899999999999986665 55577788999999999
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcC
Q psy355 113 LTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 113 ~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~ 180 (285)
+.+|.+- ++.|..++..|-.++. ++.....-.+.||+..+...+-. .+...|..|+.++..|...
T Consensus 1819 L~lLHS~--PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1819 LTLLHSQ--PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHHhcC--hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 9999863 5788888777777655 45556667789999888877654 5789999999999999865
No 106
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.87 E-value=0.0079 Score=50.08 Aligned_cols=110 Identities=16% Similarity=0.228 Sum_probs=81.6
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-HHHHHhcCcHHHHHHhhcc---------CcHHHHHHHHHHHHHH
Q psy355 108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-LKEFIKRDGFSVLLRCIQS---------KKEKLVIKSCFLIACL 177 (285)
Q Consensus 108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-~~~f~~~~gi~~L~~~L~~---------~~~~v~~ka~~~l~~L 177 (285)
....+++.+...+ ...+.+..|.-..|..+.. .+.|++.||+..|+.+|.. .+...+..+..++..+
T Consensus 67 ~p~~~i~~L~~~~---~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 67 SPEWYIKKLKSRP---STSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHTTT-----HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccC---ccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 4445777776532 2227778888777876654 7789999999999998873 3457888999999999
Q ss_pred hcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 178 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 178 ~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
+.........+-..+++..|+..|.++ +..++..++..|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~---~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSP---NIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TT---SHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCC---CHHHHHHHHHHHHHHH
Confidence 887655555555679999999999999 9999999999988764
No 107
>KOG1241|consensus
Probab=96.85 E-value=0.011 Score=58.32 Aligned_cols=154 Identities=14% Similarity=0.085 Sum_probs=111.3
Q ss_pred CCHHHHHhhhcC--C-----CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc---CCCHHHHHHHHHHHHH
Q psy355 65 GGLPVLQPLLEG--S-----DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH---DSNTTVQVKSLYAVSC 134 (285)
Q Consensus 65 Gg~~~Lv~lL~s--~-----~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~---~~~~~v~~~a~~ALs~ 134 (285)
+.+|.|+.+|.. + +-.+-..|..+|.-.+|. .+..++|+.+..+.. .++-.-|..|+.|.++
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~--------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGS 390 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC--------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGS 390 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH--------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHh
Confidence 456788887764 1 224566666667666653 233455555555441 2566788899999999
Q ss_pred HhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHH-HHHHCCcHHHHHHhcccCCCCCccHHH
Q psy355 135 LVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ-VLLSMGMVEQMCVLIDIEDALDTEMNE 213 (285)
Q Consensus 135 l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~-~l~~~g~v~~L~~lL~~~~~~d~~~~e 213 (285)
+..|..+....-+-.+++|.++.++.++.--++.-++|.++.++..-|+.+. ...-.+.+..++.-|.. .+.+-.
T Consensus 391 Il~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D----ePrva~ 466 (859)
T KOG1241|consen 391 ILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND----EPRVAS 466 (859)
T ss_pred hhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh----CchHHH
Confidence 9999777766666789999999999988888999999999999988664332 22234566666666653 788999
Q ss_pred HHHHHHHHHHhcChHHH
Q psy355 214 HLLSALASLIKDSTEAQ 230 (285)
Q Consensus 214 ~al~aL~~l~~~~~~~~ 230 (285)
.+.+++.+|+..++++.
T Consensus 467 N~CWAf~~Laea~~eA~ 483 (859)
T KOG1241|consen 467 NVCWAFISLAEAAYEAA 483 (859)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999998887654
No 108
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.84 E-value=0.028 Score=49.43 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHh
Q psy355 122 TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL 200 (285)
Q Consensus 122 ~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~l 200 (285)
......|+..|--++--||+....|-+..++..++++|.. ..+.++..+..++.+++..+|...+.+-+.+++..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 3455667777777777799999999999999999999954 579999999999999999999999999999999999999
Q ss_pred cccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 201 IDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 201 L~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+++. ..+.+++-+++..|.-.+..-
T Consensus 185 lk~~-~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 185 LKSK-STDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred Hccc-cccHHHhHHHHHHHHHHHccc
Confidence 9986 346778888888877666444
No 109
>KOG4413|consensus
Probab=96.82 E-value=0.057 Score=48.91 Aligned_cols=180 Identities=17% Similarity=0.204 Sum_probs=133.9
Q ss_pred HHHHHHHHHHhccC--CCHHHHHHHHHHHHHhhcCcc-hHH----HHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhh
Q psy355 22 AELEKIIKTLKENQ--DQKDICIGALDNLSDYVCSID-YAN----DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ 94 (285)
Q Consensus 22 ~~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~~~d-na~----~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~ 94 (285)
-...+.+..|..+- +++..+.-++..+..++++-| |+. ..+..|.++.++.|+..++.+|-..|...|..++-
T Consensus 78 hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 78 HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 33444555555444 334678889999999999987 333 35678888999999999999999999999999995
Q ss_pred CCHHHHHHHHhcCcHHHH--HHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHH
Q psy355 95 NNPFSQNFIIQTDFLNLL--LTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSC 171 (285)
Q Consensus 95 nn~~~q~~v~~~g~l~~L--~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~ 171 (285)
-|..-.++.+...+..+ .+|-.. .+.-+|...+.-|-.|..-+|......-..|.+..|..-|+. .|.-++..+.
T Consensus 158 -fpaaleaiFeSellDdlhlrnlaak-cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianci 235 (524)
T KOG4413|consen 158 -FPAALEAIFESELLDDLHLRNLAAK-CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCI 235 (524)
T ss_pred -cHHHHHHhcccccCChHHHhHHHhh-hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHH
Confidence 56666677777666654 344333 344677777776666666567777667777888888888887 5778888888
Q ss_pred HHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC
Q psy355 172 FLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE 204 (285)
Q Consensus 172 ~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~ 204 (285)
-+.+.|+.. .+-++++-+.|+|..+++.+...
T Consensus 236 ElvteLaet-eHgreflaQeglIdlicnIIsGa 267 (524)
T KOG4413|consen 236 ELVTELAET-EHGREFLAQEGLIDLICNIISGA 267 (524)
T ss_pred HHHHHHHHH-hhhhhhcchhhHHHHHHHHhhCC
Confidence 888888653 45678888999999999999876
No 110
>KOG1222|consensus
Probab=96.76 E-value=0.087 Score=49.99 Aligned_cols=232 Identities=13% Similarity=0.107 Sum_probs=151.9
Q ss_pred hHHHHHHHHHHhc-----CCHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhh
Q psy355 5 NRGFLLDALNSMM-----VNVGAELEKIIKTLKENQDQ-----KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL 74 (285)
Q Consensus 5 ~~~~L~~al~~~~-----~d~~~~mk~~l~~l~~~~~~-----~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL 74 (285)
|.+|-++-|+.-. ....+.+|+-++.+...-.+ ..-...|+--|..+.+++..-..+..-..+..||+.|
T Consensus 234 Rye~w~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaL 313 (791)
T KOG1222|consen 234 RYEFWIAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKAL 313 (791)
T ss_pred HHHHHHHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHH
Confidence 4555565555442 12255566655555444422 2335566777888888877667788888899999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHH
Q psy355 75 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSV 154 (285)
Q Consensus 75 ~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~ 154 (285)
.-.+.++-......+-.+.- -.+......+.|.+..|++++.. .++.++...+.-+=|+.-+.- .....+..|-+|.
T Consensus 314 dr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~-~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~ 390 (791)
T KOG1222|consen 314 DRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPI-QHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPH 390 (791)
T ss_pred cccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCC-CCHHHHHHHHHHhhhcccccc-ccHHHhhccchHH
Confidence 99888888888888776653 23346677889999999999996 678899988888888876543 3456777888999
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcc
Q psy355 155 LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCR 234 (285)
Q Consensus 155 L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~ 234 (285)
+..+|.++..+ .-|.-+++++ +-+...+..+....+|+.+.+.+-+.. +.++--..+..-.+|+-....++--|.
T Consensus 391 l~~ll~~d~~~--~iA~~~lYh~-S~dD~~K~MfayTdci~~lmk~v~~~~--~~~vdl~lia~ciNl~lnkRNaQlvce 465 (791)
T KOG1222|consen 391 LASLLDSDTKH--GIALNMLYHL-SCDDDAKAMFAYTDCIKLLMKDVLSGT--GSEVDLALIALCINLCLNKRNAQLVCE 465 (791)
T ss_pred HHHHhCCcccc--hhhhhhhhhh-ccCcHHHHHHHHHHHHHHHHHHHHhcC--CceecHHHHHHHHHHHhccccceEEec
Confidence 99999775421 2244455555 446678888888899998887655431 333332222222445444444444554
Q ss_pred cCcccHHHHHHH
Q psy355 235 LEPLNLKFKLNF 246 (285)
Q Consensus 235 ~~~~~l~~~l~~ 246 (285)
.. +|.-++++
T Consensus 466 Gq--gL~~LM~r 475 (791)
T KOG1222|consen 466 GQ--GLDLLMER 475 (791)
T ss_pred Cc--chHHHHHH
Confidence 33 34335553
No 111
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=96.74 E-value=0.074 Score=48.79 Aligned_cols=159 Identities=16% Similarity=0.196 Sum_probs=121.4
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHhc--CcHHHHHHhhccCC---C---------HHHHHHHH-H
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQ-NNPFSQNFIIQT--DFLNLLLTSIEHDS---N---------TTVQVKSL-Y 130 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~-nn~~~q~~v~~~--g~l~~L~~LL~~~~---~---------~~v~~~a~-~ 130 (285)
+..+.+.|++..+.+..+|++.+..++. ++......+.+. =-++.|.+++.... . +.+|...+ +
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7888899999999999999999999999 887777777764 23345555554311 1 16777766 7
Q ss_pred HHHHHhhCChHhHHHHHhcC-cHHHHHHhhccCcHHHHHHHHHHHH-HHhcC---CchHHHHHHHCCcHHHHHHhcccCC
Q psy355 131 AVSCLVRDNEECLKEFIKRD-GFSVLLRCIQSKKEKLVIKSCFLIA-CLCTD---NNQVKQVLLSMGMVEQMCVLIDIED 205 (285)
Q Consensus 131 ALs~l~r~~~~~~~~f~~~~-gi~~L~~~L~~~~~~v~~ka~~~l~-~L~~~---~~~~~~~l~~~g~v~~L~~lL~~~~ 205 (285)
+||-+..+++.....++..+ -+..+.+.|..++..+.......+. +++.+ ....+..+....++..|+.+...+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~- 216 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD- 216 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc-
Confidence 77877778887888888755 4678888898888888888887777 45544 246677788888999999988777
Q ss_pred CCCc----cHHHHHHHHHHHHHhcChH
Q psy355 206 ALDT----EMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 206 ~~d~----~~~e~al~aL~~l~~~~~~ 228 (285)
+. .+.+.+-..|..++.+...
T Consensus 217 --~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 217 --GEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred --CCcccchHHHHHHHHHHHHhcCCCc
Confidence 55 8899999999998876543
No 112
>KOG2734|consensus
Probab=96.73 E-value=0.21 Score=46.96 Aligned_cols=188 Identities=14% Similarity=0.210 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhC---------CHHHHHHHHhcCcH
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN---------NPFSQNFIIQTDFL 109 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n---------n~~~q~~v~~~g~l 109 (285)
-+....++.+.-+...+|--..|++..|++.|+.||.|.+.+|-......+-.++.- -...-+++++.+++
T Consensus 99 ~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 99 VDLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred ccHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 456778888888888899889999999999999999999999999999998887642 11345677888999
Q ss_pred HHHHHhhccCCCHHHHH------HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc-cC-cHHHHHHHHHHHHHHhcCC
Q psy355 110 NLLLTSIEHDSNTTVQV------KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ-SK-KEKLVIKSCFLIACLCTDN 181 (285)
Q Consensus 110 ~~L~~LL~~~~~~~v~~------~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~-~~-~~~v~~ka~~~l~~L~~~~ 181 (285)
+.|++-+.. -+++++. .++.-+-|++--.+.-...+++.|-+..|+.-+. .. -..-+.-|.-.++-+...+
T Consensus 179 aLLvqnveR-LdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s 257 (536)
T KOG2734|consen 179 ALLVQNVER-LDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNS 257 (536)
T ss_pred HHHHHHHHH-hhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccC
Confidence 999988875 3334443 3344455666555555556667777777766333 32 3455566666677666666
Q ss_pred chHHHHHHHCCcHHHHHHhcccCC------CCCccHHHHHHHHHHHHHhcCh
Q psy355 182 NQVKQVLLSMGMVEQMCVLIDIED------ALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 182 ~~~~~~l~~~g~v~~L~~lL~~~~------~~d~~~~e~al~aL~~l~~~~~ 227 (285)
.+.+..+-..+++..++.-|..-. .+..++-+....+|..++....
T Consensus 258 ~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~ 309 (536)
T KOG2734|consen 258 DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA 309 (536)
T ss_pred chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh
Confidence 667777777788877776655421 1123567788888888776554
No 113
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.68 E-value=0.032 Score=50.90 Aligned_cols=136 Identities=19% Similarity=0.226 Sum_probs=100.1
Q ss_pred CCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHH
Q psy355 65 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLK 144 (285)
Q Consensus 65 Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~ 144 (285)
-.++.++.++.++++.+|..|++.+|.+.. .-++|.|..++.. .++.+|..|+++|+.+ +++.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d-~~~~vr~~a~~aLg~~--~~~~--- 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSD-EDPRVRDAAADALGEL--GDPE--- 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcC-CCHHHHHHHHHHHHcc--CChh---
Confidence 468899999999999999999999776552 2268999999996 6789999999988885 3333
Q ss_pred HHHhcCcHHHHHHhhc-cCcHHHHHHHHHHHHHHhcCC-----------ch--------------HHH----HHH---HC
Q psy355 145 EFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDN-----------NQ--------------VKQ----VLL---SM 191 (285)
Q Consensus 145 ~f~~~~gi~~L~~~L~-~~~~~v~~ka~~~l~~L~~~~-----------~~--------------~~~----~l~---~~ 191 (285)
.++.|+.++. +++..+|..|++++..+-... +. ++. .+. ..
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~ 179 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDP 179 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCCh
Confidence 3456678887 478999999999988875432 01 111 111 22
Q ss_pred CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 192 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 192 g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
..++.+..++... +..+|..+..+|..+....
T Consensus 180 ~~~~~l~~~l~~~---~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 180 EAIPLLIELLEDE---DADVRRAAASALGQLGSEN 211 (335)
T ss_pred hhhHHHHHHHhCc---hHHHHHHHHHHHHHhhcch
Confidence 3556677777777 7788888888888887775
No 114
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=96.67 E-value=0.013 Score=41.34 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 82 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 82 r~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
...|+|++|++++. +.-.+.+-+.++++.++++..+++..++|--|.|+|+-+++ +....+.+
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L 66 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEIL 66 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHH
Confidence 46799999999985 44455666789999999999988888999999999998877 44444433
No 115
>KOG2973|consensus
Probab=96.67 E-value=0.086 Score=47.27 Aligned_cols=161 Identities=18% Similarity=0.198 Sum_probs=101.2
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH-HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI-IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v-~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
.-++.+|.+++|.||..|...+-.++.. + .|... .+.-.++.+.+|+.. .++ ...|+.|+.|+.... .-.+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~-~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~-~l~~~l 79 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-G-LQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKE-ELRKKL 79 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-c-hhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhH-HHHHHH
Confidence 4578899999999999999888877765 2 23222 123577888899985 333 677889999998753 334445
Q ss_pred HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH------CCcHHHHHHhcccCCCCCccHHHHHHHHHH
Q psy355 147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS------MGMVEQMCVLIDIEDALDTEMNEHLLSALA 220 (285)
Q Consensus 147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~------~g~v~~L~~lL~~~~~~d~~~~e~al~aL~ 220 (285)
++. -+..++..+..+..-+-.-+|.+++||++........+.. .|...........+.+.. .--.+....+.
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~-a~f~ylA~vf~ 157 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAY-AEFHYLAPVFA 157 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccc-cchhHHHHHHH
Confidence 544 5667777777777888888999999998876544443332 344555555555442111 12234455555
Q ss_pred HHHhcChHHHhhcccCc
Q psy355 221 SLIKDSTEAQSLCRLEP 237 (285)
Q Consensus 221 ~l~~~~~~~~~~~~~~~ 237 (285)
+|.+.. .....|..++
T Consensus 158 nls~~~-~gR~l~~~~k 173 (353)
T KOG2973|consen 158 NLSQFE-AGRKLLLEPK 173 (353)
T ss_pred HHhhhh-hhhhHhcchh
Confidence 555433 2334444443
No 116
>KOG1062|consensus
Probab=96.66 E-value=0.037 Score=55.07 Aligned_cols=140 Identities=17% Similarity=0.284 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--------------C---cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC
Q psy355 77 SDPELRWRAAETVADIVQNNPFSQNFIIQT--------------D---FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN 139 (285)
Q Consensus 77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~--------------g---~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~ 139 (285)
++|-+|...++.|+-+-||++...+.+.+- | ........++-.++..+|+.|+.+|+....+.
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~ 325 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNR 325 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCC
Confidence 467788888888888888777655544320 0 11112222222345689999999999988876
Q ss_pred hHhHHHHHhcCcH---------------HHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC
Q psy355 140 EECLKEFIKRDGF---------------SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE 204 (285)
Q Consensus 140 ~~~~~~f~~~~gi---------------~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~ 204 (285)
..+.+.+. .+++ ..+++||+++|..+|++|.-+++.|+.++. + + .++..|+.+|.+.
T Consensus 326 d~NirYva-Ln~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N-v-~-----~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 326 DNNIRYVA-LNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN-V-R-----VMVKELLEFLESS 397 (866)
T ss_pred ccceeeee-hhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc-H-H-----HHHHHHHHHHHhc
Confidence 66543221 1211 366789999999999999999998887643 2 1 3567888999988
Q ss_pred CCCCccHHHHHHHHHHHHHhcCh
Q psy355 205 DALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 205 ~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+.+++..+...+..++....
T Consensus 398 ---d~~~k~~~as~I~~laEkfa 417 (866)
T KOG1062|consen 398 ---DEDFKADIASKIAELAEKFA 417 (866)
T ss_pred ---cHHHHHHHHHHHHHHHHhcC
Confidence 99999999998888887763
No 117
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=96.64 E-value=0.042 Score=44.10 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=62.1
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR 137 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r 137 (285)
++..|.+=|+++++.++..|+.+|..++.|. +.+...+.+.+.+..|+++++...++.|+.+++..|-+-..
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4667777889999999999999999999994 66888898999999999999866778999999888776654
No 118
>KOG1242|consensus
Probab=96.60 E-value=0.081 Score=51.29 Aligned_cols=170 Identities=17% Similarity=0.208 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhh--CCHHHHHHHHhcCcHHHHHHhh
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ--NNPFSQNFIIQTDFLNLLLTSI 116 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~--nn~~~q~~v~~~g~l~~L~~LL 116 (285)
..+..+++-+.-+.+..+-.-.++--..+|.+..-|....++||..+-.+|-.++. .||.++. .+|.|++.+
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l 342 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDAL 342 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHh
Confidence 46777888888777766667778878889999999999999999999888877665 5666554 589999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHH----HHHHhhccCcHHHHHHHHHHHHHHhcCC--chHHHHHHH
Q psy355 117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFS----VLLRCIQSKKEKLVIKSCFLIACLCTDN--NQVKQVLLS 190 (285)
Q Consensus 117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~----~L~~~L~~~~~~v~~ka~~~l~~L~~~~--~~~~~~l~~ 190 (285)
.+.+ .--.+++..|+.-. +-++++..-+. .|.+.|...+..++++++-.+.|+|..- |....-++.
T Consensus 343 ~dp~--~~~~e~~~~L~~tt------FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~ 414 (569)
T KOG1242|consen 343 ADPS--CYTPECLDSLGATT------FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP 414 (569)
T ss_pred cCcc--cchHHHHHhhccee------eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence 8632 12244555555421 11233344444 4445555557888899999999998753 333322221
Q ss_pred CCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 191 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 191 ~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
-.+|.|-..+..+ .+++|+.+.++|..+.+.-
T Consensus 415 -~Llp~lk~~~~d~---~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 415 -SLLPGLKENLDDA---VPEVRAVAARALGALLERL 446 (569)
T ss_pred -HHhhHHHHHhcCC---ChhHHHHHHHHHHHHHHHH
Confidence 2556666666666 8999999999998877654
No 119
>KOG1991|consensus
Probab=96.57 E-value=0.41 Score=49.03 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=74.7
Q ss_pred HHHHHHHHHhccC------CCHHHHHHHHHHHHHhhcCc---c-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHH
Q psy355 23 ELEKIIKTLKENQ------DQKDICIGALDNLSDYVCSI---D-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 92 (285)
Q Consensus 23 ~mk~~l~~l~~~~------~~~~~~~~al~~L~~lv~~~---d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~ 92 (285)
.|.=++.+|+... .....+..||..+..+++-+ . .++- ...=.++.+.+.++|+.--+|.+|||+++..
T Consensus 411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 3445666676333 22345556665555554322 1 1221 1111256677788999999999999999999
Q ss_pred hhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh
Q psy355 93 VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC 142 (285)
Q Consensus 93 a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~ 142 (285)
+.-+=..+..+ ..++....+.|.++.+..||..|+.||..++.+.+.+
T Consensus 490 ~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 490 SSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred HhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence 94221112222 3356667777776677899999999999999987765
No 120
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.57 E-value=0.6 Score=42.90 Aligned_cols=144 Identities=10% Similarity=0.192 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC---cHHH
Q psy355 78 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD---GFSV 154 (285)
Q Consensus 78 ~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~---gi~~ 154 (285)
++++--.+-.+|-.++.. +.+...++....+..+.+.+.. ++-.+...|...+..+...|+.....|+..+ -+..
T Consensus 136 ~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~-~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~ 213 (335)
T PF08569_consen 136 NPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQL-PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQK 213 (335)
T ss_dssp STTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTS-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH
T ss_pred CccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcC-CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 455555566666666653 4445566666666667777665 5678999999999998777888888888765 3457
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhcCCchH---HHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 155 LLRCIQSKKEKLVIKSCFLIACLCTDNNQV---KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 155 L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~---~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
...+|.+++.-+|+.+.-+|+.|....+.. .+++-+..-+..++.+|++. ...++-.|...+.-.+.+.
T Consensus 214 ~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~---sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 214 YNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK---SKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHH-S
T ss_pred HHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc---chhhhHHHHHHHHHHHhCC
Confidence 788899999999999999999998764332 35555667888999999998 8889999988887766554
No 121
>KOG2999|consensus
Probab=96.56 E-value=0.15 Score=49.14 Aligned_cols=162 Identities=15% Similarity=0.249 Sum_probs=121.2
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCC----HHHHHHHHHHHHHHh
Q psy355 18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSD----PELRWRAAETVADIV 93 (285)
Q Consensus 18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~----~~vr~~A~~~lg~~a 93 (285)
-.+...-+++++++.+++. ..+..|+.+|..+.-+.-.|..|++..|+..|..+..++. .++...++++...+.
T Consensus 79 ~sp~~~a~~i~e~l~~~~~--~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elm 156 (713)
T KOG2999|consen 79 ASPSHYAKRIMEILTEGNN--ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELM 156 (713)
T ss_pred cCchHHHHHHHHHHhCCCc--HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 5677788999999998875 4555599999999999999999999999999999998754 477777777777765
Q ss_pred hCCHHHHHHHHhcCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHH
Q psy355 94 QNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCF 172 (285)
Q Consensus 94 ~nn~~~q~~v~~~g~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~ 172 (285)
...- +....+...++.....+... -.+..+-..|+.-+-+++-+.+.-.+.+.+.--+..|++.++..+.+++..|..
T Consensus 157 ehgv-vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aia 235 (713)
T KOG2999|consen 157 EHGV-VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIA 235 (713)
T ss_pred hhce-eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHH
Confidence 4322 22222222333333333321 123456677888888888888777777888888999999999999999999999
Q ss_pred HHHHHhcCCc
Q psy355 173 LIACLCTDNN 182 (285)
Q Consensus 173 ~l~~L~~~~~ 182 (285)
++..+...-|
T Consensus 236 l~nal~~~a~ 245 (713)
T KOG2999|consen 236 LLNALFRKAP 245 (713)
T ss_pred HHHHHHhhCC
Confidence 9998887644
No 122
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.54 E-value=0.22 Score=50.14 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=83.3
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
++..+.+=|+++++.+|..|.+.++.+=- +..- ..+++++.+++.+ +++-||+.|+.||..+=+-.+ ..
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~-----~~~~~~ik~~l~d-~~ayVRk~Aalav~kly~ld~---~l 161 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELL-----GNIIDPIKKLLTD-PHAYVRKTAALAVAKLYRLDK---DL 161 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHH-----HHHHHHHHHHccC-CcHHHHHHHHHHHHHHHhcCH---hh
Confidence 36777788899999999999999997642 2222 2378999999996 678999999999999975443 34
Q ss_pred HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355 146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~ 180 (285)
+.+.|-+..+..++.+.++.+...|...+..+..+
T Consensus 162 ~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 162 YHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 66667777888888899999999999999888655
No 123
>KOG0414|consensus
Probab=96.53 E-value=0.063 Score=55.60 Aligned_cols=145 Identities=16% Similarity=0.234 Sum_probs=113.6
Q ss_pred CCH-HHHHhhhc----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC
Q psy355 65 GGL-PVLQPLLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN 139 (285)
Q Consensus 65 Gg~-~~Lv~lL~----s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~ 139 (285)
|-+ |.++...+ .++|++|..|.-++|.++--....- .-.+|.|+..+..++++-+|..++-|+|-++--+
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 444 44555553 4689999999999999886433321 2268999999997789999999999999998777
Q ss_pred hHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355 140 EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 219 (285)
Q Consensus 140 ~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL 219 (285)
|.-.+.+- +.|.+-|...+..+|+.|...+++|...+ .+--.|.+..++.+|..+ +..++..|=...
T Consensus 993 pnlie~~T-----~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~---~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen 993 PNLIEPWT-----EHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDP---NAEISDLAKSFF 1059 (1251)
T ss_pred ccccchhh-----HHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCC---cHHHHHHHHHHH
Confidence 76555443 46677788899999999999999997653 444579999999999999 999999988777
Q ss_pred HHHHhcCh
Q psy355 220 ASLIKDST 227 (285)
Q Consensus 220 ~~l~~~~~ 227 (285)
..|...+.
T Consensus 1060 ~Els~k~n 1067 (1251)
T KOG0414|consen 1060 KELSSKGN 1067 (1251)
T ss_pred HHhhhccc
Confidence 77776663
No 124
>KOG1060|consensus
Probab=96.45 E-value=1 Score=45.29 Aligned_cols=158 Identities=9% Similarity=0.110 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~ 118 (285)
..+++|+..+.-++..-+++.++ +|.+|+...+.+++|+...---|-.-|.++|... .=-|..+-+-|.
T Consensus 50 ~~KleAmKRIia~iA~G~dvS~~-----Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~- 118 (968)
T KOG1060|consen 50 SLKLEAMKRIIALIAKGKDVSLL-----FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALK- 118 (968)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhc-
Confidence 45555555555555444444432 4555555555566655555544444554443211 113455666666
Q ss_pred CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHH
Q psy355 119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMC 198 (285)
Q Consensus 119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~ 198 (285)
++++-+|..|+.++|.|=- +.+.-++ +-.+-++..+..+.||+.|+.+|-.|-+-+|+....+++ .+-
T Consensus 119 DpN~LiRasALRvlSsIRv---p~IaPI~----llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e-----~I~ 186 (968)
T KOG1060|consen 119 DPNQLIRASALRVLSSIRV---PMIAPIM----LLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEE-----VIK 186 (968)
T ss_pred CCcHHHHHHHHHHHHhcch---hhHHHHH----HHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHH-----HHH
Confidence 5889999999999998722 2221121 234456677789999999999999999989888876553 445
Q ss_pred HhcccCCCCCccHHHHHHHHHHHH
Q psy355 199 VLIDIEDALDTEMNEHLLSALASL 222 (285)
Q Consensus 199 ~lL~~~~~~d~~~~e~al~aL~~l 222 (285)
.||... ++-+...|+.|...+
T Consensus 187 ~LLaD~---splVvgsAv~AF~ev 207 (968)
T KOG1060|consen 187 KLLADR---SPLVVGSAVMAFEEV 207 (968)
T ss_pred HHhcCC---CCcchhHHHHHHHHh
Confidence 566666 788888887777544
No 125
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.43 E-value=0.066 Score=51.19 Aligned_cols=134 Identities=13% Similarity=0.109 Sum_probs=91.3
Q ss_pred CHHHHHHHHhcCcHHHHHHhh---------ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC----
Q psy355 96 NPFSQNFIIQTDFLNLLLTSI---------EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK---- 162 (285)
Q Consensus 96 n~~~q~~v~~~g~l~~L~~LL---------~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~---- 162 (285)
++...+.+....++..|+++- ....+..+...|+-+|+|++-.++.+++.|.+.|+.+.++..|+..
T Consensus 11 d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~ 90 (446)
T PF10165_consen 11 DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS 90 (446)
T ss_pred CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC
Confidence 444555666666777777766 4446789999999999999999999999999999999999999875
Q ss_pred -cHHHHHHHHHHHHHHhcCCchHHHHHHHC-CcHHHHHHhcccC----C---C-------CCccHHHHHHHHHHHHHhcC
Q psy355 163 -KEKLVIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE----D---A-------LDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 163 -~~~v~~ka~~~l~~L~~~~~~~~~~l~~~-g~v~~L~~lL~~~----~---~-------~d~~~~e~al~aL~~l~~~~ 226 (285)
+..+.--...++-=++...+..+..+++. +++..+...|... + . .+.....-+|.++.+++..+
T Consensus 91 ~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~ 170 (446)
T PF10165_consen 91 QPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHY 170 (446)
T ss_pred CChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 45554434333333334456677666654 6777666554432 1 0 12334556677888887777
Q ss_pred hHH
Q psy355 227 TEA 229 (285)
Q Consensus 227 ~~~ 229 (285)
+..
T Consensus 171 ~~~ 173 (446)
T PF10165_consen 171 PKS 173 (446)
T ss_pred Ccc
Confidence 643
No 126
>KOG2734|consensus
Probab=96.41 E-value=0.87 Score=42.92 Aligned_cols=206 Identities=17% Similarity=0.155 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHh-hhc-CCCHHHHHHHHHHHHHHhh
Q psy355 19 NVGAELEKIIKTLKENQDQK-DICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQP-LLE-GSDPELRWRAAETVADIVQ 94 (285)
Q Consensus 19 d~~~~mk~~l~~l~~~~~~~-~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~-lL~-s~~~~vr~~A~~~lg~~a~ 94 (285)
.....+-+.++-|.....++ +-....+..+..+++- .+.+...++.|-+.-|+. +-. .+-......|..+++-+.|
T Consensus 176 ~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq 255 (536)
T KOG2734|consen 176 QVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQ 255 (536)
T ss_pred cHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhc
Confidence 34555555555555544322 3355556666666643 234445666666665555 332 4667788999999999999
Q ss_pred CCHHHHHHHHhcCcHHHHHHhhcc----CC----CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHH
Q psy355 95 NNPFSQNFIIQTDFLNLLLTSIEH----DS----NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKL 166 (285)
Q Consensus 95 nn~~~q~~v~~~g~l~~L~~LL~~----~~----~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v 166 (285)
|+...+..+-..+++..+++-+.- ++ ....-......|+++++ .|.+...|+...|++...-.++. ....
T Consensus 256 ~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~s 333 (536)
T KOG2734|consen 256 NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE-KKVS 333 (536)
T ss_pred cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH-HHHh
Confidence 999888888888999999887752 21 23455677778888887 47788999999999987766665 5556
Q ss_pred HHHHHHHHHHHhcCCc--hHHHHHHHCCcHHHHHHhcc-cCC------CCCccHHHHHHHHHHHHHhcC
Q psy355 167 VIKSCFLIACLCTDNN--QVKQVLLSMGMVEQMCVLID-IED------ALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 167 ~~ka~~~l~~L~~~~~--~~~~~l~~~g~v~~L~~lL~-~~~------~~d~~~~e~al~aL~~l~~~~ 226 (285)
+..|.-++-+++.+.+ ..+..+++.+++..+..+.. .|. -.-...-|+....|+++...+
T Consensus 334 r~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 334 RGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 6677778888888765 78889999888876665543 330 012345688899998888766
No 127
>KOG2025|consensus
Probab=96.35 E-value=0.33 Score=48.12 Aligned_cols=129 Identities=18% Similarity=0.211 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 117 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~ 117 (285)
.+..+.-+..+-.-..+.|.-++|+. |-+..+++-..+++..||.+.+.+|+.+..++...-+ .+-.+....+..-+.
T Consensus 59 ~dRIl~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd-~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 59 PDRILSFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDD-DVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHh
Confidence 45566666666666677888888774 6678888888999999999999999999976654433 334455555554444
Q ss_pred cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHH
Q psy355 118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLI 174 (285)
Q Consensus 118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l 174 (285)
+..+.||..|+.|||.+=. .+..- +......+..+++.+ ++.||+.|...|
T Consensus 137 -Drep~VRiqAv~aLsrlQ~-d~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 137 -DREPNVRIQAVLALSRLQG-DPKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred -ccCchHHHHHHHHHHHHhc-CCCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 2457899999999999742 22111 123445666677764 578877665444
No 128
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.30 E-value=0.19 Score=45.33 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=83.0
Q ss_pred CCHHHHH-hhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-
Q psy355 65 GGLPVLQ-PLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC- 142 (285)
Q Consensus 65 Gg~~~Lv-~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~- 142 (285)
|.+..|+ +.++|+++.||..|.+++|-++--+...... .++.+.+.++. .+..++..|+.+|..++.-+...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchh
Confidence 4455555 6899999999999999999999877643332 47888888876 47899999999999987654432
Q ss_pred HHHHHh-------cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355 143 LKEFIK-------RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 143 ~~~f~~-------~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~ 180 (285)
...... ..-+..+.+.|.+.++++|.-|+-.++.|.-.
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 111111 23456778888888999999999999998765
No 129
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.29 E-value=1.6 Score=44.67 Aligned_cols=241 Identities=15% Similarity=0.142 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhh----cCCC----HHHHHHHHHHHHHH
Q psy355 21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL----EGSD----PELRWRAAETVADI 92 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL----~s~~----~~vr~~A~~~lg~~ 92 (285)
.+.|-..+..+.+....-+.....+.-|.+++.-..|.+.+.+.|+++.|+..| +++. +.+-..-+.+|..+
T Consensus 119 L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~l 198 (802)
T PF13764_consen 119 LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESL 198 (802)
T ss_pred HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHH
Confidence 444444444444332222334444555555565567899999999999998755 4555 78888888888888
Q ss_pred hhCCHH----HHHHHHhcC--------cHHHHHHhhccC---CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHH
Q psy355 93 VQNNPF----SQNFIIQTD--------FLNLLLTSIEHD---SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLR 157 (285)
Q Consensus 93 a~nn~~----~q~~v~~~g--------~l~~L~~LL~~~---~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~ 157 (285)
.+.-.. ......... -+..|++.+.+. .++.+....+..|..++.|++...+.+++ =+.+.++
T Consensus 199 l~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~p~l~ 276 (802)
T PF13764_consen 199 LSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFKPYLD 276 (802)
T ss_pred HHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHHHhcC
Confidence 753221 001111122 377778777753 35788888999999999999998877763 2222222
Q ss_pred h--hc---cCcHHHHHHHHHHHHHHhcC------CchHHHHHHHCCcHHHHHHhcccC--C---CCCcc--------HHH
Q psy355 158 C--IQ---SKKEKLVIKSCFLIACLCTD------NNQVKQVLLSMGMVEQMCVLIDIE--D---ALDTE--------MNE 213 (285)
Q Consensus 158 ~--L~---~~~~~v~~ka~~~l~~L~~~------~~~~~~~l~~~g~v~~L~~lL~~~--~---~~d~~--------~~e 213 (285)
+ +. +++.++. .-.++.++.+ +...++.+++.|++...+.+|... . ..+++ ..-
T Consensus 277 f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp 353 (802)
T PF13764_consen 277 FDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP 353 (802)
T ss_pred hhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence 1 11 1122222 2333444433 347899999999999888887764 0 01122 235
Q ss_pred HHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcC
Q psy355 214 HLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFE 273 (285)
Q Consensus 214 ~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~ 273 (285)
.+|..|.-++.+++..+..-. . .+.. +=|+++.... ...+-..|.++|+..-.
T Consensus 354 ~iL~lL~GLa~gh~~tQ~~~~--~-~~l~-~lH~LEqvss---~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 354 YILRLLRGLARGHEPTQLLIA--E-QLLP-LLHRLEQVSS---EEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHhcCHHHHHHHH--h-hHHH-HHHHhhcCCC---ccchHHHHHHHHHHHhc
Confidence 578888888888764332211 1 1111 1134444442 34666788888877654
No 130
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.28 E-value=0.05 Score=44.37 Aligned_cols=146 Identities=15% Similarity=0.172 Sum_probs=98.9
Q ss_pred CHHHHHhhhc--CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH
Q psy355 66 GLPVLQPLLE--GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL 143 (285)
Q Consensus 66 g~~~Lv~lL~--s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~ 143 (285)
.+..++..|. ...+++|..|+-++..+- +..++.+.+ -+-..+-.++.. .+..-...++.+++.+--+.|...
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~-~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDE-GEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCC-HHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHcc-ccchhHHHHHHHHHHHhCCCHHHH
Confidence 4566777555 478899999999999985 333443322 122333334443 223467789999999998888876
Q ss_pred HHHHhc-CcHHHHHHhhc--cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCcc-HHHHHHHHH
Q psy355 144 KEFIKR-DGFSVLLRCIQ--SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTE-MNEHLLSAL 219 (285)
Q Consensus 144 ~~f~~~-~gi~~L~~~L~--~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~-~~e~al~aL 219 (285)
..++.. |-.+.++..+. +.+.+++..++-+++.-|.. ..++..+...+++.|-.+++.+ .+.. ++..|+-+|
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~--~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNS--KDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTC--C-HH-CHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccc--cchHHHHHHHHHHH
Confidence 666654 45577788888 77999999999999986654 4555666667889999999654 1444 677776665
Q ss_pred H
Q psy355 220 A 220 (285)
Q Consensus 220 ~ 220 (285)
.
T Consensus 155 ~ 155 (157)
T PF11701_consen 155 C 155 (157)
T ss_dssp H
T ss_pred h
Confidence 4
No 131
>KOG0212|consensus
Probab=96.26 E-value=0.44 Score=46.12 Aligned_cols=203 Identities=15% Similarity=0.206 Sum_probs=126.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHH----HHHH-H-HHHHhhcCcchHHHHHHcC-CHHHHHhhhcCCC
Q psy355 6 RGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDIC----IGAL-D-NLSDYVCSIDYANDFLKMG-GLPVLQPLLEGSD 78 (285)
Q Consensus 6 ~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~----~~al-~-~L~~lv~~~dna~~~~~~G-g~~~Lv~lL~s~~ 78 (285)
..|++|..+-...+-.-..-.++..+-.-..+.+++ .... . .|.-++....-... ++.| .+..+.++|.++.
T Consensus 271 l~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~ 349 (675)
T KOG0212|consen 271 LTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDR 349 (675)
T ss_pred HHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcch
Confidence 368888887765554444444444332222221221 1111 1 23333332111111 3334 3567788999999
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHH---
Q psy355 79 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVL--- 155 (285)
Q Consensus 79 ~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L--- 155 (285)
.+-|..++.-|-.+-.+.|. |-.+.....++.|++-|+. .+..|...++.-++++|.+.... |-++.+
T Consensus 350 ~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd-~sd~vvl~~L~lla~i~~s~~~~-------~~~~fl~sL 420 (675)
T KOG0212|consen 350 EETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSD-RSDEVVLLALSLLASICSSSNSP-------NLRKFLLSL 420 (675)
T ss_pred HHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcC-chhHHHHHHHHHHHHHhcCcccc-------cHHHHHHHH
Confidence 99999999999988877664 6667777899999999995 66789999999999999864331 224444
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 156 LRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 156 ~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
++..+.+..-+..++.+.++.||.- +++ .+-..++.+|... .+.++...-..+|..++-.+|+
T Consensus 421 L~~f~e~~~~l~~Rg~lIIRqlC~lL~aE--------~IYr~~a~ILe~e--~nl~FAstMV~~Ln~iLlTStE 484 (675)
T KOG0212|consen 421 LEMFKEDTKLLEVRGNLIIRQLCLLLNAE--------RIYRSIADILERE--ENLKFASTMVQALNTILLTSTE 484 (675)
T ss_pred HHHHhhhhHHHHhhhhHHHHHHHHHhCHH--------HHHHHHHHHHhcc--ccchHHHHHHHHHHhhhcccHH
Confidence 4444456677888999999988864 332 2334455555543 2566666666666666655554
No 132
>KOG1059|consensus
Probab=96.24 E-value=0.093 Score=51.89 Aligned_cols=175 Identities=20% Similarity=0.219 Sum_probs=116.9
Q ss_pred HHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCC
Q psy355 42 IGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN 121 (285)
Q Consensus 42 ~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~ 121 (285)
--||.-|..++- .|-|+|+. +-++.||+|+.|-+|..|.-++-.+.---|. ++ ...+|.|..-|.. +|
T Consensus 127 giAL~GLS~fvT-pdLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Al--r~~FprL~EkLeD-pD 194 (877)
T KOG1059|consen 127 GLALSGLSCIVT-PDLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---AL--RPCFPRLVEKLED-PD 194 (877)
T ss_pred hheecccccccC-chhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hH--hhhHHHHHHhccC-CC
Confidence 345666666663 57788754 5678899999999999999999988765554 33 3479999999995 78
Q ss_pred HHHHHHHHHHHHHHhhCChHhHHHH----H------hcC-cHHHHHHhh---ccCcHHHHHHHHHHHHHHhcCCc-----
Q psy355 122 TTVQVKSLYAVSCLVRDNEECLKEF----I------KRD-GFSVLLRCI---QSKKEKLVIKSCFLIACLCTDNN----- 182 (285)
Q Consensus 122 ~~v~~~a~~ALs~l~r~~~~~~~~f----~------~~~-gi~~L~~~L---~~~~~~v~~ka~~~l~~L~~~~~----- 182 (285)
++|+..|+..|+-++|-+|.+.-.+ . ..| .+=.++.++ ..-.+++.+|..-=|.++..+..
T Consensus 195 p~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLl 274 (877)
T KOG1059|consen 195 PSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLL 274 (877)
T ss_pred chHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHH
Confidence 9999999999999999988763222 1 011 111112222 12245666665555555543321
Q ss_pred -hHHHHHHH----CC----------cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355 183 -QVKQVLLS----MG----------MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS 231 (285)
Q Consensus 183 -~~~~~l~~----~g----------~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~ 231 (285)
+....++. .| ++..|-.++..+ |+.++--.|.++.-|+...|.++.
T Consensus 275 YECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fieds---DqNLKYlgLlam~KI~ktHp~~Vq 335 (877)
T KOG1059|consen 275 YECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDS---DQNLKYLGLLAMSKILKTHPKAVQ 335 (877)
T ss_pred HHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcC---CccHHHHHHHHHHHHhhhCHHHHH
Confidence 11111111 12 456677777777 999999999999999999987553
No 133
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=96.15 E-value=0.099 Score=41.40 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=59.2
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHhhccCCCHH-HHHHHHHHHHHHhh
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTT-VQVKSLYAVSCLVR 137 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~~v~~~g~l~~L~~LL~~~~~~~-v~~~a~~ALs~l~r 137 (285)
++..|.+=|++++|.++..|+.++..++.| .+.+...+...+.+..|.+++....+.. |+.+++..+..-..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 355677778899999999999999999999 4668888889999999999998754434 89998887776544
No 134
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.15 E-value=0.011 Score=34.31 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=26.3
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355 108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD 138 (285)
Q Consensus 108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~ 138 (285)
.+|.+++++++ +++.||..|+++|+.++++
T Consensus 1 llp~l~~~l~D-~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLND-PSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT--SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCC-CCHHHHHHHHHHHHHHHhh
Confidence 47999999995 7899999999999999875
No 135
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.12 E-value=0.18 Score=44.34 Aligned_cols=184 Identities=14% Similarity=0.171 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHhhcCcc-hHHH-HHHcCCHHHHHh-------hhcCCC--HHHH---HHHHHHHHHHhhCCHHHHHHH
Q psy355 38 KDICIGALDNLSDYVCSID-YAND-FLKMGGLPVLQP-------LLEGSD--PELR---WRAAETVADIVQNNPFSQNFI 103 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~d-na~~-~~~~Gg~~~Lv~-------lL~s~~--~~vr---~~A~~~lg~~a~nn~~~q~~v 103 (285)
.+.+..|+.+|..--+..+ -|-- .+.-|.+..|+. .|..+. +..- ..|+..+-.+|. +|+.+..+
T Consensus 9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~F 87 (262)
T PF04078_consen 9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMPF 87 (262)
T ss_dssp HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHHH
T ss_pred cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHHH
Confidence 4678999999998877754 3433 356666666643 233322 2222 333344445565 78889999
Q ss_pred HhcCcHHHHHHhhccC----CCHHHHHHHHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355 104 IQTDFLNLLLTSIEHD----SNTTVQVKSLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC 178 (285)
Q Consensus 104 ~~~g~l~~L~~LL~~~----~~~~v~~~a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~ 178 (285)
+++...-.|...|... +-+.+|-.++..|+.+++...+ .+.-+.....+|..++.|..++.-.|.-|+|.+..+.
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9998766666666542 1257889999999999986544 4544556788999999999999999999999999998
Q ss_pred cCCc---------hHHHHHHHCCcHHHHHH-hcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 179 TDNN---------QVKQVLLSMGMVEQMCV-LIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 179 ~~~~---------~~~~~l~~~g~v~~L~~-lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
..+. +....+. .++..++. +...+ ++.+..++.++-..|..+..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~--~vL~~mV~~l~~~p---S~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVA--MVLNKMVEQLVKQP---SPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHH--HHHHHHHHHHHHS-----HHHHHHHHHHHHHHTTSTT
T ss_pred cchhHHHHHhcCHHHHHHHH--HHHHHHHHHHccCC---ChhHHHHHHHHHHHHccCHH
Confidence 7642 1111121 24444444 34445 78888999999988876663
No 136
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=96.12 E-value=0.13 Score=41.10 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=59.5
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhh
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVR 137 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~L~~LL~~-----~~~~~v~~~a~~ALs~l~r 137 (285)
++..|.+-|+|++|.++..|+.+|-.+++|. +.++..|...+.+.-|++++.. .++..|+.+.+..|-.-..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667778889999999999999999999986 5578888899999999999963 2567899988876655443
No 137
>KOG2259|consensus
Probab=96.12 E-value=0.027 Score=55.05 Aligned_cols=150 Identities=12% Similarity=0.166 Sum_probs=110.4
Q ss_pred HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh
Q psy355 58 ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR 137 (285)
Q Consensus 58 a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r 137 (285)
+..++..|++..+|.=|..+--+||..|...++.++++.|..... ++..|+.++.. ....||-+|+++|-.|+.
T Consensus 366 ~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfND-E~~~VRL~ai~aL~~Is~ 439 (823)
T KOG2259|consen 366 EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFND-EIEVVRLKAIFALTMISV 439 (823)
T ss_pred ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhcc-HHHHHHHHHHHHHHHHHH
Confidence 446788899999999888888999999999999999999986654 57789999995 567999999999999877
Q ss_pred CChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHH
Q psy355 138 DNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLS 217 (285)
Q Consensus 138 ~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~ 217 (285)
+ -.++..-++.+...|...+.++|...--++.+.=-.+-+.... ++..|...|.. -|+-+...+.
T Consensus 440 ~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m-----~v~~lL~~L~k----yPqDrd~i~~ 504 (823)
T KOG2259|consen 440 H------LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM-----CVAHLLKNLGK----YPQDRDEILR 504 (823)
T ss_pred H------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHhhh----CCCCcHHHHH
Confidence 5 2233445677889999999999998877777643222222221 23344444443 3444566777
Q ss_pred HHHHHHhcChH
Q psy355 218 ALASLIKDSTE 228 (285)
Q Consensus 218 aL~~l~~~~~~ 228 (285)
++..|.++.+.
T Consensus 505 cm~~iGqnH~~ 515 (823)
T KOG2259|consen 505 CMGRIGQNHRR 515 (823)
T ss_pred HHHHHhccChh
Confidence 78887777764
No 138
>KOG1967|consensus
Probab=96.11 E-value=0.096 Score=53.05 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=106.4
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHhhCCH-------------HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHH
Q psy355 68 PVLQPLLEGSDPELRWRAAETVADIVQNNP-------------FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 134 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~-------------~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~ 134 (285)
..++.+|++ |++-.+|+.++.-+..+.+ -.+|.+. ...+|.|++.+.+ .+..+|..-+-+||+
T Consensus 818 ~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t-~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 818 EKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFET-APGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhcc-CCccchhHHHHHHHH
Confidence 345555554 3444555666655554433 2233332 3589999999995 456788899999999
Q ss_pred HhhCChHhHHHHHh--cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHH
Q psy355 135 LVRDNEECLKEFIK--RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMN 212 (285)
Q Consensus 135 l~r~~~~~~~~f~~--~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~ 212 (285)
...+-|.. .++. ...+|+|+++|+-+|..+|..+..++.-++...+.....-+ .-+||.++.+=.+.++....+|
T Consensus 894 Vl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 894 VLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHH
Confidence 99876653 2332 34678999999999999999999999988887665554444 2567777776444411126799
Q ss_pred HHHHHHHHHHHhcChH
Q psy355 213 EHLLSALASLIKDSTE 228 (285)
Q Consensus 213 e~al~aL~~l~~~~~~ 228 (285)
+.|+.+|..|++.-|.
T Consensus 971 ~~ALqcL~aL~~~~P~ 986 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPT 986 (1030)
T ss_pred HHHHHHHHHHhccCCC
Confidence 9999999999986664
No 139
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=96.09 E-value=0.14 Score=40.55 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=61.1
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHhcCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHhhC
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTSIEH--DSNTTVQVKSLYAVSCLVRD 138 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~-~q~~v~~~g~l~~L~~LL~~--~~~~~v~~~a~~ALs~l~r~ 138 (285)
++..|-+-|++++|.++..|+.+|..++.|... ++..+.....+..|++++.. ..+..|+.+++..|-+-...
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 466777788999999999999999999999755 77778887888889999986 35789999999888776554
No 140
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.07 E-value=0.077 Score=43.65 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=78.7
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--cHHHHHHhhccCCCHHHHHHHHHHHHHHh---hCChH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD--FLNLLLTSIEHDSNTTVQVKSLYAVSCLV---RDNEE 141 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g--~l~~L~~LL~~~~~~~v~~~a~~ALs~l~---r~~~~ 141 (285)
+..+..+|+++++.-|+.++..++.+++.++ .+.+.+.| .+..|+..|+...+..+++.|+.+++.|. ++.|.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4567789999999999999999999998874 23443443 67889999998777889999999998874 56666
Q ss_pred hHHHHHhcCcHH----HHHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355 142 CLKEFIKRDGFS----VLLRCIQSKKEKLVIKSCFLIACLCTDNN 182 (285)
Q Consensus 142 ~~~~f~~~~gi~----~L~~~L~~~~~~v~~ka~~~l~~L~~~~~ 182 (285)
-...+..- -++ .++.+++. ..+...+..+++.+....|
T Consensus 105 l~Rei~tp-~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 105 LTREIATP-NLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred hHHHHhhc-cHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 55555432 233 33333332 4666677777777766555
No 141
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=96.06 E-value=0.32 Score=44.21 Aligned_cols=167 Identities=16% Similarity=0.093 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhc-------C----cHHHHHHhhc---c--CCCHHHHHHHHHHHHHHhhCChH
Q psy355 78 DPELRWRAAETVADIVQNNPFSQNFIIQT-------D----FLNLLLTSIE---H--DSNTTVQVKSLYAVSCLVRDNEE 141 (285)
Q Consensus 78 ~~~vr~~A~~~lg~~a~nn~~~q~~v~~~-------g----~l~~L~~LL~---~--~~~~~v~~~a~~ALs~l~r~~~~ 141 (285)
.-++|..|+.++-....+|+..|..+++. + ....|+.-|- . ..++----.|+..++.++++++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 56899999999999999999999999863 1 1112333332 1 12333345799999999999998
Q ss_pred hHHHHHhc------Cc------HHHHHHhhcc-----CcHHHHHHHHHHHHHHhcCCchHHHHHHHCC-cHHHHHHhccc
Q psy355 142 CLKEFIKR------DG------FSVLLRCIQS-----KKEKLVIKSCFLIACLCTDNNQVKQVLLSMG-MVEQMCVLIDI 203 (285)
Q Consensus 142 ~~~~f~~~------~g------i~~L~~~L~~-----~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g-~v~~L~~lL~~ 203 (285)
+.+..... .| ++.+..+|.. .+++++.--..+|+.-+.+.|.....+++.| .++.|+.....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 87666532 11 2334444443 3688888888888888888998888888775 77999987554
Q ss_pred CCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHH
Q psy355 204 EDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFI 247 (285)
Q Consensus 204 ~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 247 (285)
.+..++-++.-+...|+-+...+. +.+.-++..+.++|.+|
T Consensus 211 ~~~~~~~VqGL~A~LLGicyef~~---~~s~~~R~~l~~ll~~r 251 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICYEFST---KDSPIPRATLHPLLTKR 251 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHT-S----SCCC-HHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHhcC---CCCCcCHHHHHHHHHHh
Confidence 434455666666666665555442 12222334555555533
No 142
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=96.04 E-value=0.11 Score=41.52 Aligned_cols=107 Identities=19% Similarity=0.224 Sum_probs=74.4
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQN 101 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~ 101 (285)
+.+.++..+++....++-...+ .+.+++..- +.+.+ ++..|.+-|.+++|.++..|+.++..++.|. +.++.
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l-~icD~i~~~~~~~ke-----a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ 79 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLIL-EICDLINSSPDGAKE-----AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHR 79 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHH-HHHHHHHTSTTHHHH-----HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHhCcCCCCCCHHHHH-HHHHHHHcCCccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5566666666664433332222 355555442 33333 3567778899999999999999999999997 67888
Q ss_pred HHHhcCcHHHHHHhhccCCCHH---HHHHHHHHHHHHh
Q psy355 102 FIIQTDFLNLLLTSIEHDSNTT---VQVKSLYAVSCLV 136 (285)
Q Consensus 102 ~v~~~g~l~~L~~LL~~~~~~~---v~~~a~~ALs~l~ 136 (285)
.+.....+..|.+++.+..... |+.+++-.|..-.
T Consensus 80 ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 80 EVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 8888889999999998654444 8888886666544
No 143
>KOG0567|consensus
Probab=96.04 E-value=0.33 Score=42.69 Aligned_cols=138 Identities=18% Similarity=0.244 Sum_probs=79.6
Q ss_pred CCHHHHHhhhc--CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC---
Q psy355 65 GGLPVLQPLLE--GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN--- 139 (285)
Q Consensus 65 Gg~~~Lv~lL~--s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~--- 139 (285)
.++|+|+..|. +..|-||..|+.++|.+-. + +.++.|-++.+ ++...|+..+.-||-.+-..+
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~-dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIK-DPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhc-CCccccchHHHHHHHHHHHhhccc
Confidence 35888888554 6789999999999998772 2 13344444442 344455555445554432210
Q ss_pred ------------hHh-------------------------HHHH--HhcCc---HHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355 140 ------------EEC-------------------------LKEF--IKRDG---FSVLLRCIQSKKEKLVIKSCFLIACL 177 (285)
Q Consensus 140 ------------~~~-------------------------~~~f--~~~~g---i~~L~~~L~~~~~~v~~ka~~~l~~L 177 (285)
|.. ...| ...|| +..|+..|..++.-.|..++|+++.|
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl 214 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQL 214 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhc
Confidence 000 0001 11222 33445556656666677777766655
Q ss_pred hcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 178 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 178 ~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
-+ .-.|+.|.+.|... ...+-+|--|+.||..|+...
T Consensus 215 ~s-----------~~ai~~L~k~L~d~-~E~pMVRhEaAeALGaIa~e~ 251 (289)
T KOG0567|consen 215 QS-----------PAAIPSLIKVLLDE-TEHPMVRHEAAEALGAIADED 251 (289)
T ss_pred cc-----------hhhhHHHHHHHHhh-hcchHHHHHHHHHHHhhcCHH
Confidence 22 23567777766643 236788888999999887433
No 144
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.04 E-value=0.14 Score=49.89 Aligned_cols=155 Identities=14% Similarity=0.188 Sum_probs=96.0
Q ss_pred cCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH---HHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355 64 MGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF---SQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 64 ~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~---~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~ 140 (285)
.|.+|.|...|++.+..|+......+|.|+.|.|+ .+++. .+---|+.+|.+ .++++|+.|...+++|.+---
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks-~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKS-WNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHH-hhHHHHHhhhhhhhhHHhhcC
Confidence 46789999999999999999999999999999886 12222 122347777876 678999999999999977422
Q ss_pred Hh---------------HHH---------HHh-cCcHHHHHHhhc---cCcHHHHHHHHHHHHHHhcC-CchHHHHHHHC
Q psy355 141 EC---------------LKE---------FIK-RDGFSVLLRCIQ---SKKEKLVIKSCFLIACLCTD-NNQVKQVLLSM 191 (285)
Q Consensus 141 ~~---------------~~~---------f~~-~~gi~~L~~~L~---~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~ 191 (285)
++ ++. +.+ +|-+.+|-.+|. ++...+|.-..-+++.+..- +...++++..
T Consensus 763 PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~- 841 (975)
T COG5181 763 PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYS- 841 (975)
T ss_pred HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 21 111 112 122333333343 34455555443333333221 2223333331
Q ss_pred CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 192 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 192 g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+.|.|-..|... |+..|..+...+.+|+-+|+
T Consensus 842 -itPlleDAltDr---D~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 842 -ITPLLEDALTDR---DPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred -hhHHHHhhhccc---chHHHHHHHHHHHHHhcCCC
Confidence 334445555555 77888888888888877765
No 145
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.03 E-value=0.44 Score=47.31 Aligned_cols=218 Identities=21% Similarity=0.179 Sum_probs=119.1
Q ss_pred HHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC----C
Q psy355 3 EANRGFLLDALNSMMVNV-GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG----S 77 (285)
Q Consensus 3 ~e~~~~L~~al~~~~~d~-~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s----~ 77 (285)
+.-|+|+-+|+......+ +..|++.+ .+..-+..+....+..|...+...+ ..- +..+..++++ .
T Consensus 378 ~~~r~~~lDal~~aGT~~av~~i~~~I---~~~~~~~~ea~~~l~~l~~~~~~Pt-~e~------l~~l~~L~~~~~~~~ 447 (618)
T PF01347_consen 378 EQARKIFLDALPQAGTNPAVKFIKDLI---KSKKLTDDEAAQLLASLPFHVRRPT-EEL------LKELFELAKSPKVKN 447 (618)
T ss_dssp HHHHHHHHHHHHHH-SHHHHHHHHHHH---HTT-S-HHHHHHHHHHHHHT------HHH------HHHHHHHHT-HHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHhhcCCCC-HHH------HHHHHHHHhCccccC
Confidence 345777777777764332 45555444 3344445555566666666553322 111 3344445543 4
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHH-----------HHHhcCcHHHHHHhhc---cCCCHHHHHHHHHHHHHHhhCChHhH
Q psy355 78 DPELRWRAAETVADIVQNNPFSQN-----------FIIQTDFLNLLLTSIE---HDSNTTVQVKSLYAVSCLVRDNEECL 143 (285)
Q Consensus 78 ~~~vr~~A~~~lg~~a~nn~~~q~-----------~v~~~g~l~~L~~LL~---~~~~~~v~~~a~~ALs~l~r~~~~~~ 143 (285)
++.++..|+-++|+++.. .|.. ..+....++.|.+.|. +..+...+..++-||+|+ |++..
T Consensus 448 ~~~l~~ta~L~~~~lv~~--~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~~~- 522 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHK--YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHPES- 522 (618)
T ss_dssp -HHHHHHHHHHHHHHHHH--HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-GGG-
T ss_pred ChhHHHHHHHHHHHHhCc--eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCchh-
Confidence 678899999999988742 2222 2333457778877776 335667888999999998 44443
Q ss_pred HHHHhcCcHHHHHHhhccC---cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHH
Q psy355 144 KEFIKRDGFSVLLRCIQSK---KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 220 (285)
Q Consensus 144 ~~f~~~~gi~~L~~~L~~~---~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~ 220 (285)
++.|...+... +..+|..|.|++..+....|.. +.+.|..++... ..++++|-.|..+|
T Consensus 523 --------i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~-~e~~EvRiaA~~~l- 584 (618)
T PF01347_consen 523 --------IPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNT-TEDPEVRIAAYLIL- 584 (618)
T ss_dssp --------HHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-T-TS-HHHHHHHHHHH-
T ss_pred --------hHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCC-CCChhHHHHHHHHH-
Confidence 34445555554 7899999999999887766533 234445555543 23677887776655
Q ss_pred HHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHH
Q psy355 221 SLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVL 268 (285)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il 268 (285)
+...|. ...++.....+. .+.+.++..|...-|
T Consensus 585 --m~~~P~------------~~~l~~i~~~l~-~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 585 --MRCNPS------------PSVLQRIAQSLW-NEPSNQVASFVYSHL 617 (618)
T ss_dssp --HHT---------------HHHHHHHHHHHT-T-S-HHHHHHHHHHH
T ss_pred --HhcCCC------------HHHHHHHHHHHh-hCchHHHHHHHHHhc
Confidence 444442 123443334444 567777777776654
No 146
>KOG1248|consensus
Probab=95.96 E-value=0.89 Score=47.51 Aligned_cols=214 Identities=14% Similarity=0.101 Sum_probs=126.2
Q ss_pred hHHHHHHHHHHh--cCCHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCH
Q psy355 5 NRGFLLDALNSM--MVNVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDP 79 (285)
Q Consensus 5 ~~~~L~~al~~~--~~d~~~~mk~~l~~l~~~~~~--~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~ 79 (285)
..+-|++++..- ..-..+.+..+...|.++..+ .-.+..++.-|..+++..+ .=-+|+.. .+|-++-+++.-+.
T Consensus 674 ~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~EvIL~~Ke~n~ 752 (1176)
T KOG1248|consen 674 AYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-LIPEVILSLKEVNV 752 (1176)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHhcccccH
Confidence 355677777771 112233344444444444432 2345555555555555444 11133332 24433334477788
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHhcC------cHHHHHHhhccC--CC-HHHHHHHHHHHHHHhhCChHhHHHHHhcC
Q psy355 80 ELRWRAAETVADIVQNNPFSQNFIIQTD------FLNLLLTSIEHD--SN-TTVQVKSLYAVSCLVRDNEECLKEFIKRD 150 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g------~l~~L~~LL~~~--~~-~~v~~~a~~ALs~l~r~~~~~~~~f~~~~ 150 (285)
.-|..|..+|-.++. -+...+.| .+..++..+... .+ ..++...+.|++.+..........-.-.+
T Consensus 753 ~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~ 827 (1176)
T KOG1248|consen 753 KARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEK 827 (1176)
T ss_pred HHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 888888888887772 11122223 455555555532 22 23333336777777654332222111233
Q ss_pred cHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 151 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 151 gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
.++.+...|.++...+++.|..++.-++...|...-.-...-+++.+..++... ...++.++...|..+...+.
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~---k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH---KIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHhC
Confidence 455666678889999999999999999999886654444445778888887766 77888888888888887774
No 147
>KOG4535|consensus
Probab=95.94 E-value=0.028 Score=53.19 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=85.0
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHhh----CCHH---HHHHHHhcCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHhhC
Q psy355 68 PVLQPLLEGSDPELRWRAAETVADIVQ----NNPF---SQNFIIQTDFLNLLLTSIEH--DSNTTVQVKSLYAVSCLVRD 138 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~----nn~~---~q~~v~~~g~l~~L~~LL~~--~~~~~v~~~a~~ALs~l~r~ 138 (285)
..++.-|.+..-.+|..|+|.+|||.. |-|. .+..+.. -.+..++.+-.. .....|+..|..+|+|+..-
T Consensus 436 ~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv 514 (728)
T KOG4535|consen 436 NAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF 514 (728)
T ss_pred HHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH
Confidence 344445555667899999999999863 3333 3333322 233444443321 23458999999999998642
Q ss_pred ChHhHHHHHhc-------CcHHHHHHh-hccCcHHHHHHHHHHHHHHhcCCch-HHHHHHHCCcHHHHHHhcccCCCCCc
Q psy355 139 NEECLKEFIKR-------DGFSVLLRC-IQSKKEKLVIKSCFLIACLCTDNNQ-VKQVLLSMGMVEQMCVLIDIEDALDT 209 (285)
Q Consensus 139 ~~~~~~~f~~~-------~gi~~L~~~-L~~~~~~v~~ka~~~l~~L~~~~~~-~~~~l~~~g~v~~L~~lL~~~~~~d~ 209 (285)
.+.+++. +.+..+... .-....+||.+||++++||..+..- .+..=----+++.|+.++.+- .+=
T Consensus 515 ----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~--~NF 588 (728)
T KOG4535|consen 515 ----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSC--KNF 588 (728)
T ss_pred ----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHh--ccc
Confidence 2222221 112222222 2234789999999999999876321 110000112456777777654 266
Q ss_pred cHHHHHHHHHHH
Q psy355 210 EMNEHLLSALAS 221 (285)
Q Consensus 210 ~~~e~al~aL~~ 221 (285)
++|..|..+|..
T Consensus 589 KVRi~AA~aL~v 600 (728)
T KOG4535|consen 589 KVRIRAAAALSV 600 (728)
T ss_pred eEeehhhhhhcC
Confidence 788888888754
No 148
>KOG0213|consensus
Probab=95.87 E-value=0.14 Score=51.00 Aligned_cols=180 Identities=11% Similarity=0.128 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHc-CCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHH---HHHHHhcCcHHHHHH
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKM-GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS---QNFIIQTDFLNLLLT 114 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~-Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~---q~~v~~~g~l~~L~~ 114 (285)
+..=..|.++..++.-++.-.-+-.+ |.+|.|...|++.+..|+..+...+|.||.+.|+. +++. .+---|+.
T Consensus 856 EvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLle 932 (1172)
T KOG0213|consen 856 EVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLE 932 (1172)
T ss_pred HHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHH
Confidence 44445566666666555443333332 45799999999999999999999999999988861 2221 12334777
Q ss_pred hhccCCCHHHHHHHHHHHHHHhhCChHh------------------------HHHHHh-cCcHHHHHHhhc---cCcHHH
Q psy355 115 SIEHDSNTTVQVKSLYAVSCLVRDNEEC------------------------LKEFIK-RDGFSVLLRCIQ---SKKEKL 166 (285)
Q Consensus 115 LL~~~~~~~v~~~a~~ALs~l~r~~~~~------------------------~~~f~~-~~gi~~L~~~L~---~~~~~v 166 (285)
+|.+ .++++|+.|...+++|++---++ +..+.+ +|-+.+|-.+|. .+...|
T Consensus 933 lLka-hkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nV 1011 (1172)
T KOG0213|consen 933 LLKA-HKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANV 1011 (1172)
T ss_pred HHHH-HHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHH
Confidence 8876 57899999999999997742221 111112 122233333333 345555
Q ss_pred HHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 167 VIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 167 ~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
|.-..-+++.+..- +...++++. -+.|.|-..|... |...|..+..++.+|+-+++
T Consensus 1012 QnGVLkalsf~FeyigemskdYiy--av~PlleDAlmDr---D~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1012 QNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMDR---DLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred HHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccc---cHHHHHHHHHHHHHHhcCCC
Confidence 55544444444321 112223332 1334445555555 77778888888777776553
No 149
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.87 E-value=0.1 Score=43.71 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhhC-CHHH----HHHHH------hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355 80 ELRWRAAETVADIVQN-NPFS----QNFII------QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK 148 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~n-n~~~----q~~v~------~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~ 148 (285)
.||..|+.+|..+++. .+.. ...++ ..+.-+.|+.++-.|+++.+|..|+.+++.|..|..+.....-+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3789999999999988 3321 00111 22355667777776789999999999999999986554333222
Q ss_pred cC----cH---------------HHHHHhhccC-cHHHHHHHHHHHHHHhcCCchHH--HHHHHCCcHHHHHHhcccCCC
Q psy355 149 RD----GF---------------SVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVK--QVLLSMGMVEQMCVLIDIEDA 206 (285)
Q Consensus 149 ~~----gi---------------~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~~--~~l~~~g~v~~L~~lL~~~~~ 206 (285)
.. .+ ..|+..|+.. +..+.....-+++.|+...|..+ ..++ ..++..+..++.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll-~~~v~~v~~~l~~~-- 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL-TEVVTQVRPLLRHR-- 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHH-HHHHHHHHHHHhcC--
Confidence 22 12 2445556654 57777888888888988877443 1121 12344555667776
Q ss_pred CCccHHHHHHHHHHHHHhcCh
Q psy355 207 LDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 207 ~d~~~~e~al~aL~~l~~~~~ 227 (285)
|++++..++.++..++...+
T Consensus 158 -d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 158 -DPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred -CCcHHHHHHHHHHHHHcCCC
Confidence 99999999999999887654
No 150
>KOG0301|consensus
Probab=95.83 E-value=0.74 Score=45.37 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcC----CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHH
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMG----GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 113 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~G----g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~ 113 (285)
.+.+..||+.|+.++...-....|+..- -+..+++.++ .++..+..++++|.|+-.| +..++.+... +..+.
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 4668899999999987765555565522 2334444444 6688899999999999976 7777777654 33332
Q ss_pred Hhhc---cCCCHHHHHHHHHHHHHHhhCChHh-HHHHHhcCcHHHHHHhhcc-----CcHHHHHHHHHHHHHHhcCCchH
Q psy355 114 TSIE---HDSNTTVQVKSLYAVSCLVRDNEEC-LKEFIKRDGFSVLLRCIQS-----KKEKLVIKSCFLIACLCTDNNQV 184 (285)
Q Consensus 114 ~LL~---~~~~~~v~~~a~~ALs~l~r~~~~~-~~~f~~~~gi~~L~~~L~~-----~~~~v~~ka~~~l~~L~~~~~~~ 184 (285)
..+. +.++..++ -|++.++-++.-. .+.-.+.+|.+.+..++.. ++....-++.-++.+|+..++..
T Consensus 634 ~~~~~~~s~~~knl~----ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQ----IALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhcccchhHH----HHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 2222 11223333 2333333322211 1111235788877777654 24445556777888998887666
Q ss_pred HHHHHHCCcHHHHHHhccc
Q psy355 185 KQVLLSMGMVEQMCVLIDI 203 (285)
Q Consensus 185 ~~~l~~~g~v~~L~~lL~~ 203 (285)
++.... --+..+++-++.
T Consensus 710 ~~~A~~-~~v~sia~~~~~ 727 (745)
T KOG0301|consen 710 IQLAKN-RSVDSIAKKLKE 727 (745)
T ss_pred HHHHHh-cCHHHHHHHHHH
Confidence 554443 345555555554
No 151
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.81 E-value=0.028 Score=46.76 Aligned_cols=92 Identities=21% Similarity=0.392 Sum_probs=69.1
Q ss_pred HHHHHHHHhh--cCcchHHHHHHcCCHHHHHhhhcC---------CCHHHHHHHHHHHHHHhhCCHHHHHHHHh-cCcHH
Q psy355 43 GALDNLSDYV--CSIDYANDFLKMGGLPVLQPLLEG---------SDPELRWRAAETVADIVQNNPFSQNFIIQ-TDFLN 110 (285)
Q Consensus 43 ~al~~L~~lv--~~~dna~~~~~~Gg~~~Lv~lL~s---------~~~~vr~~A~~~lg~~a~nn~~~q~~v~~-~g~l~ 110 (285)
..+..|.-.. ..+++...|+..||+..|+.+|.. .+..+...++++|-.++ |++.....+++ .++++
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~-n~~~G~~~v~~~~~~v~ 161 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM-NTKYGLEAVLSHPDSVN 161 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT-SSHHHHHHHHCSSSHHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH-ccHHHHHHHHcCcHHHH
Confidence 3444444443 446788999999999999998762 44588999999998888 66666666665 68999
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355 111 LLLTSIEHDSNTTVQVKSLYAVSCLV 136 (285)
Q Consensus 111 ~L~~LL~~~~~~~v~~~a~~ALs~l~ 136 (285)
.|...|.+ ++..+|.-++..|+.+|
T Consensus 162 ~i~~~L~s-~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 162 LIALSLDS-PNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 99999986 67899999999999876
No 152
>KOG3036|consensus
Probab=95.79 E-value=1.2 Score=38.95 Aligned_cols=185 Identities=15% Similarity=0.194 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhhcC-cchHHHH-HHcCCHHHHHh-hhc----------CCCHHHHHHHHHHHHHHhhCCHHHHHHHHh
Q psy355 39 DICIGALDNLSDYVCS-IDYANDF-LKMGGLPVLQP-LLE----------GSDPELRWRAAETVADIVQNNPFSQNFIIQ 105 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~-~dna~~~-~~~Gg~~~Lv~-lL~----------s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~ 105 (285)
..++.||.+|..--+. .|.|.-+ +..|....++. .+. ++...-|.--+-+|=.++..+|+.+..|++
T Consensus 39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~ 118 (293)
T KOG3036|consen 39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLR 118 (293)
T ss_pred chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHH
Confidence 5677888888887765 3555544 44454444433 221 223344544444555556678999999999
Q ss_pred cCcHHHHHHhhcc----CCCHHHHHHHHHHHHHHhhCChHhHHHHH-hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355 106 TDFLNLLLTSIEH----DSNTTVQVKSLYAVSCLVRDNEECLKEFI-KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 106 ~g~l~~L~~LL~~----~~~~~v~~~a~~ALs~l~r~~~~~~~~f~-~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~ 180 (285)
+..=-.|-..|.. .+.+-.|-.++..|+.++.........|+ ..+.+|..++.+..++.-.|.-|+|.+..+...
T Consensus 119 A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlld 198 (293)
T KOG3036|consen 119 AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLD 198 (293)
T ss_pred ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhc
Confidence 8654444444442 35578999999999999998766655555 578899999999999999999999999988766
Q ss_pred Cch---H---HHHHHH-CCcHHHHH-HhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 181 NNQ---V---KQVLLS-MGMVEQMC-VLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 181 ~~~---~---~~~l~~-~g~v~~L~-~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+.. . .+.+.. .-++..++ .+.+.+ +..+..+++++...|..+.
T Consensus 199 D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p---s~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 199 DVGLYYICQTAERFSAVALVLGKMVFQLVSMP---SPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhcCCH
Confidence 431 1 111111 12333333 444556 8899999999998876443
No 153
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=95.72 E-value=0.19 Score=44.38 Aligned_cols=196 Identities=16% Similarity=0.145 Sum_probs=115.0
Q ss_pred CCHHhHHHHHHHHHHhcCC------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCC--HHHHHh
Q psy355 1 MNEANRGFLLDALNSMMVN------VGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGG--LPVLQP 72 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~~d------~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg--~~~Lv~ 72 (285)
|++++...|++.++....+ ......-.+.++.. ...+.+..+++-++-++-....+..+...++ ...+..
T Consensus 36 l~~~el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~ 113 (268)
T PF08324_consen 36 LSEEELESLESLLSALKSTSAYHSDLSAWLILLLKILLS--WPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLST 113 (268)
T ss_dssp S-HHHHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCC--S-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHh--CCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHH
Confidence 5677788888888777522 12222222222222 3346799999999999887776655655542 344444
Q ss_pred hhc----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-C-cHHHHHHhhccCC---CHHHHHHHHHHHHHHhhCChHhH
Q psy355 73 LLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQT-D-FLNLLLTSIEHDS---NTTVQVKSLYAVSCLVRDNEECL 143 (285)
Q Consensus 73 lL~----s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~-g-~l~~L~~LL~~~~---~~~v~~~a~~ALs~l~r~~~~~~ 143 (285)
++. +..+..+.-++++++|+-.+.+. ++.+.+. + .+...+..+.... +..+|..++..+-|++.......
T Consensus 114 ~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~ 192 (268)
T PF08324_consen 114 LISSGSSSSPPANQMLALRLLANLFSHPPG-RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNR 192 (268)
T ss_dssp HHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhccCCCcHHHHHHHHHHHHHhhCCCcc-HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcC
Confidence 433 35789999999999999986554 4455443 3 3444444444322 57888888887777753211100
Q ss_pred H-HHHhcCcHHHHHHhhcc--CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHH
Q psy355 144 K-EFIKRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCV 199 (285)
Q Consensus 144 ~-~f~~~~gi~~L~~~L~~--~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~ 199 (285)
. .=....-+..+++.+.. .+.+..-++.-++++|+..++.........|+-..+..
T Consensus 193 ~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~ 251 (268)
T PF08324_consen 193 SDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSK 251 (268)
T ss_dssp S-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHH
Confidence 0 00000123455553332 58899999999999999777666555554555544433
No 154
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.70 E-value=0.97 Score=44.53 Aligned_cols=185 Identities=15% Similarity=0.115 Sum_probs=107.7
Q ss_pred HhHHHHHHHHHHhc-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC----CC
Q psy355 4 ANRGFLLDALNSMM-VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG----SD 78 (285)
Q Consensus 4 e~~~~L~~al~~~~-~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s----~~ 78 (285)
.-|.|+..|+.... ..-+..|++ .+.+..-+..+...++-.+...+...+ .. .+..+..++++ ++
T Consensus 341 ~~r~~~~Dal~~~GT~~a~~~i~~---~i~~~~~~~~ea~~~~~~~~~~~~~Pt-~~------~l~~l~~l~~~~~~~~~ 410 (574)
T smart00638 341 KARRIFLDAVAQAGTPPALKFIKQ---WIKNKKITPLEAAQLLAVLPHTARYPT-EE------ILKALFELAESPEVQKQ 410 (574)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH---HHHcCCCCHHHHHHHHHHHHHhhhcCC-HH------HHHHHHHHhcCcccccc
Confidence 44677777777664 222333333 344444445555566666655553322 11 24455566654 36
Q ss_pred HHHHHHHHHHHHHHhh----CCHHHHHHHHhcCcHHHHHHhhcc---CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc
Q psy355 79 PELRWRAAETVADIVQ----NNPFSQNFIIQTDFLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG 151 (285)
Q Consensus 79 ~~vr~~A~~~lg~~a~----nn~~~q~~v~~~g~l~~L~~LL~~---~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g 151 (285)
+.++..|.-++|+++. +++.+.. .+-...++.|...|.. ..+...+.-++-||+|+ |++.....+
T Consensus 411 ~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~~~~i~~l----- 482 (574)
T smart00638 411 PYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA--GHPSSIKVL----- 482 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc--CChhHHHHH-----
Confidence 6788888988888763 2222221 1223477777777753 23445567788999996 455544333
Q ss_pred HHHHHHhhc---cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355 152 FSVLLRCIQ---SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 219 (285)
Q Consensus 152 i~~L~~~L~---~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL 219 (285)
...+. ..+..+|..|.|++..++...|.. +-+.|..++... ..++++|-.|..+|
T Consensus 483 ----~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~-~e~~EvRiaA~~~l 540 (574)
T smart00638 483 ----EPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNR-AEPPEVRMAAVLVL 540 (574)
T ss_pred ----HHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCC-CCChHHHHHHHHHH
Confidence 23332 236899999999999887665532 233444555543 23677887776665
No 155
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=95.70 E-value=0.64 Score=42.32 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHHhhCChHhHHHHHhc--------C---cHHHHHHhhc------cCcHHHHHHHHHHHHHHhcCCch
Q psy355 121 NTTVQVKSLYAVSCLVRDNEECLKEFIKR--------D---GFSVLLRCIQ------SKKEKLVIKSCFLIACLCTDNNQ 183 (285)
Q Consensus 121 ~~~v~~~a~~ALs~l~r~~~~~~~~f~~~--------~---gi~~L~~~L~------~~~~~v~~ka~~~l~~L~~~~~~ 183 (285)
.-.+|..|++++-+.+.+|+..+.+|++. + ....|.+.|- +.++---.-|+.++.++..++++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 56899999999999999999999999842 1 1112444444 23444456799999999999888
Q ss_pred HHHHHHHC------------CcHHHHHHhcccC--CCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHH
Q psy355 184 VKQVLLSM------------GMVEQMCVLIDIE--DALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKE 249 (285)
Q Consensus 184 ~~~~l~~~------------g~v~~L~~lL~~~--~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 249 (285)
.++.+.+- ..+..+..+|-.. .+.++.++.-.|..|..-+-++|.++..+-...-++..+++. .
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~-~- 208 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEF-S- 208 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHH-H-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHH-h-
Confidence 87766542 2345566665552 134788888889999999999999999886666566555553 1
Q ss_pred HccChHhhHHHHHHHHHHHHHhcC
Q psy355 250 KHAGNEVYHKELEHVNSVLTEVFE 273 (285)
Q Consensus 250 ~l~~~~e~~~~~~~~~~il~~~f~ 273 (285)
-+...+..-+-..|.=+|=.|+.
T Consensus 209 -~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 209 -NQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp -S--TCCCHHHHHHHHHHHHHHHH
T ss_pred -hcCCCCcchHHHHHHHHHHHHHH
Confidence 12222334444566666655543
No 156
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.69 E-value=1.9 Score=42.02 Aligned_cols=187 Identities=11% Similarity=0.135 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCC--H-HHHHhhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHH
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGG--L-PVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 113 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg--~-~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~ 113 (285)
..-+..++..+.+.++..+. .+++.+.- + .+...-++. ++..+|-.|+.+|.+-. ..+|..+-..+-...+.
T Consensus 148 ~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl---~fv~~nf~~E~erNy~m 223 (858)
T COG5215 148 VSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL---MFVQGNFCYEEERNYFM 223 (858)
T ss_pred hHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH---HHHHHhhcchhhhchhh
Confidence 46789999999999998764 45544332 2 233334544 78899999999998722 22333333333333333
Q ss_pred Hhh---ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHH---H-
Q psy355 114 TSI---EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK---Q- 186 (285)
Q Consensus 114 ~LL---~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~---~- 186 (285)
+.. ....+.+++.+|..++..|..-+=.-.+...+.-......+.+++++.++...|.-.-+.+|.+.-+.- +
T Consensus 224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~ 303 (858)
T COG5215 224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKY 303 (858)
T ss_pred eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence 322 124678999999988888876554445555555566778899999999999999999998886521110 0
Q ss_pred ------------HHHHCCcHHHHHHhcccC----CCCCccHHHHHHHHHHHHHhcChH
Q psy355 187 ------------VLLSMGMVEQMCVLIDIE----DALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 187 ------------~l~~~g~v~~L~~lL~~~----~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
.-.-..++|-|.+||... +.+|-.+.-.|..+|.-.++.+.+
T Consensus 304 ~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd 361 (858)
T COG5215 304 LPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD 361 (858)
T ss_pred cccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh
Confidence 111134789999999874 233445666777777766666643
No 157
>KOG4653|consensus
Probab=95.69 E-value=0.59 Score=47.31 Aligned_cols=192 Identities=15% Similarity=0.095 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH
Q psy355 21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ 100 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q 100 (285)
.+...+++..+.++.. --+-.++..|..++++-+-+.....-|.+...+..|++.++-|--.|.+.+..+|.
T Consensus 726 ~e~~qeai~sl~d~qv--pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce------ 797 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQV--PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE------ 797 (982)
T ss_pred HHHHHHHHHHhcCCcc--cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH------
Confidence 4456666655555442 45778899999999987766677778889999999999999998888888888774
Q ss_pred HHHHhcCcHHHHHHhhccCCC---HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355 101 NFIIQTDFLNLLLTSIEHDSN---TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 177 (285)
Q Consensus 101 ~~v~~~g~l~~L~~LL~~~~~---~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L 177 (285)
+....++|.|...-.+.++ +..+-+.--||.++++---+-...+.+ -.+...++..+.++...|..++..++.+
T Consensus 798 --vy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 798 --VYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQL 874 (982)
T ss_pred --hcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence 3556788988874332221 123344446666665532222222221 3445556677778899999999999999
Q ss_pred hcCCchHH-HHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 178 CTDNNQVK-QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 178 ~~~~~~~~-~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
|.-..-.. ..+. .++..++.+...+ +.+.+|..|...+..++.+-.
T Consensus 875 cq~~a~~vsd~~~--ev~~~Il~l~~~d--~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 875 CQLLAFQVSDFFH--EVLQLILSLETTD--GSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHhhhhhHHHH--HHHHHHHHHHccC--CchhhHHHHHHHHHHHHhccc
Confidence 87533111 2222 3556666776665 467899999999998887664
No 158
>KOG3036|consensus
Probab=95.67 E-value=1.3 Score=38.64 Aligned_cols=169 Identities=16% Similarity=0.179 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHHH---hccCCC---HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhc-----CCCHHHHHHHHH
Q psy355 19 NVGAELEKIIKTL---KENQDQ---KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE-----GSDPELRWRAAE 87 (285)
Q Consensus 19 d~~~~mk~~l~~l---~~~~~~---~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~-----s~~~~vr~~A~~ 87 (285)
-..-.+++++.+. +.+.-+ ......||.-|...+.-.|....|.+...=-.|.++|. .+..-+|-.++-
T Consensus 68 ~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLG 147 (293)
T KOG3036|consen 68 TMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLG 147 (293)
T ss_pred hHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHH
Confidence 4456677777643 333222 35677899999999998999999998874445556665 356789999999
Q ss_pred HHHHHhhCCH-HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH------hHHHHHhcC-cH-HHHHHh
Q psy355 88 TVADIVQNNP-FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE------CLKEFIKRD-GF-SVLLRC 158 (285)
Q Consensus 88 ~lg~~a~nn~-~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~------~~~~f~~~~-gi-~~L~~~ 158 (285)
+||.+++|.+ ++-..++..+++|..++.+.. .++.-+.-|.+-+.-|.-+... ..+.|...+ .+ ..+.++
T Consensus 148 VIgaLvk~dd~eVi~fLl~TeIVPlCLrime~-GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l 226 (293)
T KOG3036|consen 148 VIGALVKNDDQEVIRFLLTTEIVPLCLRIMES-GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQL 226 (293)
T ss_pred HHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhc-ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999765 355566788999999999997 4567788888888887654221 123333222 12 234455
Q ss_pred hccCcHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy355 159 IQSKKEKLVIKSCFLIACLCTDNNQVKQVLL 189 (285)
Q Consensus 159 L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~ 189 (285)
.+.++.++-+.+..+...|+. +|..+..+-
T Consensus 227 ~~~ps~RllKhviRcYlrLsd-nprar~aL~ 256 (293)
T KOG3036|consen 227 VSMPSPRLLKHVIRCYLRLSD-NPRARAALR 256 (293)
T ss_pred hcCCCHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 556788888888887777744 555554443
No 159
>KOG1248|consensus
Probab=95.64 E-value=2.1 Score=44.90 Aligned_cols=167 Identities=17% Similarity=0.147 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHhc----CCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hhcC
Q psy355 5 NRGFLLDALNSMM----VNVGAELEKIIKTLKENQDQ---KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEG 76 (285)
Q Consensus 5 ~~~~L~~al~~~~----~d~~~~mk~~l~~l~~~~~~---~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s 76 (285)
++.||+-....++ .|....+++.+.-+....++ .-....-|+.+.-++.-.++... .++-.+.. ..++
T Consensus 590 ~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~v----s~l~~v~~~~e~~ 665 (1176)
T KOG1248|consen 590 RSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQV----SKLFTVDPEFENS 665 (1176)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhH----HHHHHhhHHhhcc
Confidence 5678887774442 45566677766665554431 11222233333333322222111 01114444 4556
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHH
Q psy355 77 SDPELRWRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSV 154 (285)
Q Consensus 77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~--g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~ 154 (285)
.++.+|..|-++|+.+.+. |.++..+.+. .+...|.+-+++ .+...+..++.+|+.|.+.++.-...|+-.....+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev 743 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV 743 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 7999999999999999987 5555444332 345556666665 45689999999999999998854445664454555
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHh
Q psy355 155 LLRCIQSKKEKLVIKSCFLIACLC 178 (285)
Q Consensus 155 L~~~L~~~~~~v~~ka~~~l~~L~ 178 (285)
++.. +..+.+.|+.|--+|..++
T Consensus 744 IL~~-Ke~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 744 ILSL-KEVNVKARRNAFALLVFIG 766 (1176)
T ss_pred HHhc-ccccHHHHhhHHHHHHHHH
Confidence 5554 7678889998888888887
No 160
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.63 E-value=0.18 Score=40.52 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=62.0
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD 138 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~-~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~ 138 (285)
++..|.+=|+|++|.++..|+.+|..++.|.. .++..|...+.+..|.+++....+..|+.+++..|-.-...
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 46677777889999999999999999999876 47778888999999999998756789999999888776543
No 161
>KOG0212|consensus
Probab=95.63 E-value=0.71 Score=44.70 Aligned_cols=173 Identities=18% Similarity=0.222 Sum_probs=115.8
Q ss_pred HHHhhcCcchHHHHHHcC-CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHH
Q psy355 48 LSDYVCSIDYANDFLKMG-GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 126 (285)
Q Consensus 48 L~~lv~~~dna~~~~~~G-g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~ 126 (285)
|.++...|++.....+.+ .++.++.-++++++.+|..|..-|-..++--+. .-...-.|++..++.++.......++.
T Consensus 232 l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~e~~~i~~ 310 (675)
T KOG0212|consen 232 LSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDTEEMSIKE 310 (675)
T ss_pred HHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCCccccHHH
Confidence 444444455544443333 567888899999999999999888888875442 223344678888888888644334544
Q ss_pred HHHHH---HHHHhhCChHhHHHHHhcC-cHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcc
Q psy355 127 KSLYA---VSCLVRDNEECLKEFIKRD-GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLID 202 (285)
Q Consensus 127 ~a~~A---Ls~l~r~~~~~~~~f~~~~-gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~ 202 (285)
.|... +..++.. +...+. ++.| .+.++.+.++++....|..+.--|..|-+..|... ......+.+.|..-|.
T Consensus 311 ~a~~~n~~l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLs 387 (675)
T KOG0212|consen 311 YAQMVNGLLLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLS 387 (675)
T ss_pred HHHHHHHHHHHHHhh-hhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhc
Confidence 33322 2222221 111111 4444 56888889999999999999988888877766433 2223467788888888
Q ss_pred cCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 203 IEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 203 ~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
.+ +..+...++..+.+|+++..
T Consensus 388 d~---sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 388 DR---SDEVVLLALSLLASICSSSN 409 (675)
T ss_pred Cc---hhHHHHHHHHHHHHHhcCcc
Confidence 88 89999999999999998775
No 162
>KOG1242|consensus
Probab=95.56 E-value=2.4 Score=41.41 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=102.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHH-HHHHHHHHhhCChHhHHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVK-SLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~-a~~ALs~l~r~~~~~~~~ 145 (285)
.+.+.++++++.-.-|.-|++.++.++.|+.. ..+.+.+.+..|-..+.. .....++. ++.|.-..+.+--+.++.
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~d-k~~~~~re~~~~a~~~~~~~Lg~~~EP 212 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIID-KKSALNREAALLAFEAAQGNLGPPFEP 212 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhcc-cchhhcHHHHHHHHHHHHHhcCCCCCc
Confidence 56777899999999999999999999988764 346778899999988885 43444443 433333333221111111
Q ss_pred HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
.+ ..-+|.+...+.+...++|..|..++..+.+.-+...- .-+++.++.-+... .-+.+..++..|..++..
T Consensus 213 yi-v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~---kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 213 YI-VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEA---KWRTKMASLELLGAMADC 284 (569)
T ss_pred hH-HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHH---hhhhHHHHHHHHHHHHHh
Confidence 11 23445556666667899999999999988776432211 12334444444433 557788999999999988
Q ss_pred ChHHHhhc
Q psy355 226 STEAQSLC 233 (285)
Q Consensus 226 ~~~~~~~~ 233 (285)
.|..+..|
T Consensus 285 ap~qLs~~ 292 (569)
T KOG1242|consen 285 APKQLSLC 292 (569)
T ss_pred chHHHHHH
Confidence 88877666
No 163
>KOG2025|consensus
Probab=95.54 E-value=1.3 Score=44.05 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=74.6
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHH
Q psy355 7 GFLLDALNSMM--VNVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELR 82 (285)
Q Consensus 7 ~~L~~al~~~~--~d~~~~mk~~l~~l~~~~~~--~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr 82 (285)
+||-....++. .-+.+.+...+..+-...++ ...+.+.++-|.-+++.+....+-+-.|-...+..=|..-.|.||
T Consensus 64 ~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VR 143 (892)
T KOG2025|consen 64 SFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVR 143 (892)
T ss_pred HHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHH
Confidence 45555555553 12223344444433332222 356777787777777643333343333444455444556789999
Q ss_pred HHHHHHHHHHh--hCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHH
Q psy355 83 WRAAETVADIV--QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 134 (285)
Q Consensus 83 ~~A~~~lg~~a--~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~ 134 (285)
.+|..+|+..- .++++ ..+...+..+++.+++++||+.|+..|++
T Consensus 144 iqAv~aLsrlQ~d~~dee-------~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 144 IQAVLALSRLQGDPKDEE-------CPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred HHHHHHHHHHhcCCCCCc-------ccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 99999999875 24444 45778899999999999999987766665
No 164
>KOG2999|consensus
Probab=95.53 E-value=0.39 Score=46.38 Aligned_cols=158 Identities=13% Similarity=0.202 Sum_probs=121.9
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC---CHHHHHHHHHHHHHHhhCChHhH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS---NTTVQVKSLYAVSCLVRDNEECL 143 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~---~~~v~~~a~~ALs~l~r~~~~~~ 143 (285)
...+...+.++++.-+..|..-+..+.. .+.....++...++..|.+++.++. ...+....+.|.|.+..+.....
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4567888899999889889999999986 5667888999999999999998643 34677788888888876644333
Q ss_pred HHHHhcCcHHHHHHhh--ccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHH
Q psy355 144 KEFIKRDGFSVLLRCI--QSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221 (285)
Q Consensus 144 ~~f~~~~gi~~L~~~L--~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~ 221 (285)
..+- ..++.....+. +.-+..+-..|...+-+++.+.+...+.+.+.--+..|+..|... +..++..|+..+-+
T Consensus 164 ~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~---n~~i~~~aial~na 239 (713)
T KOG2999|consen 164 ESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS---NQRIQTCAIALLNA 239 (713)
T ss_pred eecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc---chHHHHHHHHHHHH
Confidence 3222 22333333332 223666777888889999998888888898999999999999998 99999999999999
Q ss_pred HHhcChHH
Q psy355 222 LIKDSTEA 229 (285)
Q Consensus 222 l~~~~~~~ 229 (285)
+...+|+.
T Consensus 240 l~~~a~~~ 247 (713)
T KOG2999|consen 240 LFRKAPDD 247 (713)
T ss_pred HHhhCChH
Confidence 99888764
No 165
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.49 E-value=0.51 Score=45.87 Aligned_cols=155 Identities=12% Similarity=0.055 Sum_probs=100.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc
Q psy355 72 PLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG 151 (285)
Q Consensus 72 ~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g 151 (285)
.-+++++-.-|..|+.++|.+..+-...+-.-+-..++|.+..+.. ++..-++..++|+++.|+.+-+..+. ..|-
T Consensus 373 qni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-D~~l~vk~ttAwc~g~iad~va~~i~---p~~H 448 (858)
T COG5215 373 QNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-DSCLWVKSTTAWCFGAIADHVAMIIS---PCGH 448 (858)
T ss_pred HhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-cceeehhhHHHHHHHHHHHHHHHhcC---cccc
Confidence 4577899999999999999999764443333333568898888888 57788999999999999875443222 2333
Q ss_pred HHHHHHhh-c--cCcHHHHHHHHHHHHHHhcCCchHHHH---HHHC---CcHHHHHHhcccCCCCCccHHHHHHHHHHHH
Q psy355 152 FSVLLRCI-Q--SKKEKLVIKSCFLIACLCTDNNQVKQV---LLSM---GMVEQMCVLIDIEDALDTEMNEHLLSALASL 222 (285)
Q Consensus 152 i~~L~~~L-~--~~~~~v~~ka~~~l~~L~~~~~~~~~~---l~~~---g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l 222 (285)
+++.+... . .+.+++-...+|.+-+|+.+-+...+. ++-. .++..|++--.. ...+...|..+..+|..+
T Consensus 449 l~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~-~~Ne~n~R~s~fsaLgtl 527 (858)
T COG5215 449 LVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTEL-ALNESNLRVSLFSALGTL 527 (858)
T ss_pred ccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHh-hccchhHHHHHHHHHHHH
Confidence 33333322 1 246788899999999998763322210 1100 122222221111 112567899999999999
Q ss_pred HhcChHHHh
Q psy355 223 IKDSTEAQS 231 (285)
Q Consensus 223 ~~~~~~~~~ 231 (285)
...+|+.+.
T Consensus 528 i~~~~d~V~ 536 (858)
T COG5215 528 ILICPDAVS 536 (858)
T ss_pred HhhcchhHH
Confidence 999987654
No 166
>KOG1058|consensus
Probab=95.49 E-value=0.92 Score=45.42 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=25.0
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhC
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQN 95 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n 95 (285)
+|.+..+|.|.++-||..|.-+|++|=++
T Consensus 136 ~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 136 MPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 35555689999999999999999999887
No 167
>KOG2274|consensus
Probab=95.43 E-value=1.9 Score=44.04 Aligned_cols=150 Identities=14% Similarity=0.159 Sum_probs=103.6
Q ss_pred HHhHHHHHHHHHHhc-CCH--HHHHHHH-----HHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhh
Q psy355 3 EANRGFLLDALNSMM-VNV--GAELEKI-----IKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL 74 (285)
Q Consensus 3 ~e~~~~L~~al~~~~-~d~--~~~mk~~-----l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL 74 (285)
+|--.-|.|||.++- .|+ ...|+.. +.++....+++.....+.+-+.+++..-+|...+.. --+|.|+..|
T Consensus 544 ~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil 622 (1005)
T KOG2274|consen 544 DEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVL 622 (1005)
T ss_pred HHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHH
Confidence 445556777777763 332 3444443 334444445555555666667777765555555543 3489999999
Q ss_pred cCCC----HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC
Q psy355 75 EGSD----PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD 150 (285)
Q Consensus 75 ~s~~----~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~ 150 (285)
..+. +....-|+.+|.++..|.|.---..+-+=++|++.+..-++.+-++-..+--+|+.++...+++....-..+
T Consensus 623 ~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~ 702 (1005)
T KOG2274|consen 623 QLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEP 702 (1005)
T ss_pred cCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCC
Confidence 9877 899999999999999886542222223448999999887767778888899999999988888777777677
Q ss_pred cHH
Q psy355 151 GFS 153 (285)
Q Consensus 151 gi~ 153 (285)
|+.
T Consensus 703 g~~ 705 (1005)
T KOG2274|consen 703 GHN 705 (1005)
T ss_pred Ccc
Confidence 765
No 168
>KOG1789|consensus
Probab=95.38 E-value=0.36 Score=50.01 Aligned_cols=142 Identities=16% Similarity=0.225 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHh----cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHH
Q psy355 80 ELRWRAAETVADIVQNNPFSQNFIIQ----TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVL 155 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~nn~~~q~~v~~----~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L 155 (285)
+=...++.+|.|+.+-||.....+-. -|.++.+..+|...++..++.-|+..++-++. +.++...+...|.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence 34567899999999999976655433 38889999999877778899999998887665 67788888888888888
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 156 LRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 156 ~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+.+|.+ -+..|..+...++.|++. +.......++|++..+..++-.. ..++.|..+...|..+..+.
T Consensus 1819 L~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~--~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLT--NSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhcc--CcHHHHHHHHHHHHHhhhcc
Confidence 888865 466778888999988665 55666777788888777776654 26788888888887776543
No 169
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.37 E-value=1.8 Score=38.17 Aligned_cols=166 Identities=18% Similarity=0.225 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhccCC---C---HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCC-----HHHHHHHHHHH
Q psy355 21 GAELEKIIKTLKENQD---Q---KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSD-----PELRWRAAETV 89 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~---~---~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~-----~~vr~~A~~~l 89 (285)
+..+++++.+...-.. + ......||.-|..++...+....|.+....-.|.++|+..+ ..+|-.++.+|
T Consensus 41 ~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVI 120 (262)
T PF04078_consen 41 AALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVI 120 (262)
T ss_dssp HHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHH
Confidence 4567777776544332 2 25677899999999988899999999997777788887433 57999999999
Q ss_pred HHHhh-CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH-------HHh-cCcHHHHHH-hh
Q psy355 90 ADIVQ-NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE-------FIK-RDGFSVLLR-CI 159 (285)
Q Consensus 90 g~~a~-nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~-------f~~-~~gi~~L~~-~L 159 (285)
|.++. +++++-..+++.+++|..++.+.. .++--|.-|.+-+..|.-+ ..+.+. |.. ...+..++. +.
T Consensus 121 gaLvK~d~~evi~fLl~tEiiplcLr~me~-GselSKtvAtfIlqKIL~d-d~GL~yiC~t~eRf~av~~vL~~mV~~l~ 198 (262)
T PF04078_consen 121 GALVKTDDPEVISFLLQTEIIPLCLRIMEF-GSELSKTVATFILQKILLD-DVGLNYICQTAERFFAVAMVLNKMVEQLV 198 (262)
T ss_dssp HHHHTT--HHHHHHHHCTTHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHhhchHHHHHHHHHh-ccHHHHHHHHHHHHHHHcc-hhHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence 99998 456678888999999999999997 4677888899999888764 222222 221 123333333 33
Q ss_pred ccCcHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy355 160 QSKKEKLVIKSCFLIACLCTDNNQVKQVLL 189 (285)
Q Consensus 160 ~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~ 189 (285)
..+++++-+....+-.-|+. +|..+..+.
T Consensus 199 ~~pS~RLLKhIIrCYlRLsd-nprar~aL~ 227 (262)
T PF04078_consen 199 KQPSPRLLKHIIRCYLRLSD-NPRAREALR 227 (262)
T ss_dssp HS--HHHHHHHHHHHHHHTT-STTHHHHHH
T ss_pred cCCChhHHHHHHHHHHHHcc-CHHHHHHHH
Confidence 44577777777776666533 455555444
No 170
>KOG1020|consensus
Probab=95.37 E-value=1 Score=48.26 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHhccC--------CC-HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHH
Q psy355 18 VNVGAELEKIIKTLKENQ--------DQ-KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAET 88 (285)
Q Consensus 18 ~d~~~~mk~~l~~l~~~~--------~~-~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~ 88 (285)
...-.++|-.+..+.+.+ .+ .-..-.|-+...++...-...+.|- +-+..++..|..+.+.+|..|+++
T Consensus 762 ~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD--~yLk~Il~~l~e~~ialRtkAlKc 839 (1692)
T KOG1020|consen 762 ITVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFD--PYLKLILSVLGENAIALRTKALKC 839 (1692)
T ss_pred hhhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhH--HHHHHHHHHhcCchHHHHHHHHHH
Confidence 344566777777666553 01 1112233333333333333333332 235677788999999999999999
Q ss_pred HHHHhhCCHHHHH-HHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHH
Q psy355 89 VADIVQNNPFSQN-FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLV 167 (285)
Q Consensus 89 lg~~a~nn~~~q~-~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~ 167 (285)
|..++.-.|.+-. .-++.|+... +. ++...||..|+--+|..+-.++.-...++ ..+.+-..++...||
T Consensus 840 lS~ive~Dp~vL~~~dvq~~Vh~R---~~--DssasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgvsVR 909 (1692)
T KOG1020|consen 840 LSMIVEADPSVLSRPDVQEAVHGR---LN--DSSASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDTGVSVR 909 (1692)
T ss_pred HHHHHhcChHhhcCHHHHHHHHHh---hc--cchhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCchhHH
Confidence 9999987664211 1112222222 22 45679999999999999888887766665 355666777789999
Q ss_pred HHHHHHHHHHhcCCchH
Q psy355 168 IKSCFLIACLCTDNNQV 184 (285)
Q Consensus 168 ~ka~~~l~~L~~~~~~~ 184 (285)
+++.-.++.+|.+.|++
T Consensus 910 KRvIKIlrdic~e~pdf 926 (1692)
T KOG1020|consen 910 KRVIKILRDICEETPDF 926 (1692)
T ss_pred HHHHHHHHHHHHhCCCh
Confidence 99999999999998754
No 171
>KOG1991|consensus
Probab=95.31 E-value=0.48 Score=48.52 Aligned_cols=112 Identities=10% Similarity=0.257 Sum_probs=75.0
Q ss_pred CCHHHHHhhhc------C--CCHHHHHHHHHHHHHHhh----CCH--HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHH
Q psy355 65 GGLPVLQPLLE------G--SDPELRWRAAETVADIVQ----NNP--FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLY 130 (285)
Q Consensus 65 Gg~~~Lv~lL~------s--~~~~vr~~A~~~lg~~a~----nn~--~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ 130 (285)
|.++.++..|+ . .++.-..-|++++|+++. +.| ..-+.+ .++.+...+++ +.--+|.+|||
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f----lv~hVfP~f~s-~~g~Lrarac~ 484 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF----LVNHVFPEFQS-PYGYLRARACW 484 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH----HHHHhhHhhcC-chhHHHHHHHH
Confidence 34555556555 2 356677889999999883 233 222223 34444456665 45579999999
Q ss_pred HHHHHh-hCChHhHHHHHhcCcHHHHHHhhc-cCcHHHHHHHHHHHHHHhcCCchH
Q psy355 131 AVSCLV-RDNEECLKEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQV 184 (285)
Q Consensus 131 ALs~l~-r~~~~~~~~f~~~~gi~~L~~~L~-~~~~~v~~ka~~~l~~L~~~~~~~ 184 (285)
.++.++ -+.+... .+ ...+....++|. +.+--|+..|+.++..+.++.+..
T Consensus 485 vl~~~~~~df~d~~-~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDPN-NL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred HHHHHHhccCCChH-HH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence 999998 3333221 22 245677788888 678999999999999999886644
No 172
>KOG2611|consensus
Probab=95.07 E-value=2.1 Score=40.90 Aligned_cols=196 Identities=15% Similarity=0.178 Sum_probs=126.5
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHhhCCH---HHHHHHHhcCcHHHHHHhhccC------CCHHHHHHHHHHHHHHhhCCh
Q psy355 70 LQPLLEGSDPELRWRAAETVADIVQNNP---FSQNFIIQTDFLNLLLTSIEHD------SNTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 70 Lv~lL~s~~~~vr~~A~~~lg~~a~nn~---~~q~~v~~~g~l~~L~~LL~~~------~~~~v~~~a~~ALs~l~r~~~ 140 (285)
+..|+...+.+-|..|+-.+...+.|.+ ..+..+.+.=+++-+=+||.+. ++...+.-++..|.|.|+...
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5677788888889999999999998754 3455677887888888888752 344667788888999998643
Q ss_pred Hh-HHHHHhcCcHHHHHHhhccC-cHH------HHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHH
Q psy355 141 EC-LKEFIKRDGFSVLLRCIQSK-KEK------LVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMN 212 (285)
Q Consensus 141 ~~-~~~f~~~~gi~~L~~~L~~~-~~~------v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~ 212 (285)
-+ -..++ +-||.|.+.+... ++. +...+-.+++.+++. +.-.+.++..|.++.+++.-..+ +-..-
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~---~~~~d 169 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELP---DGSHD 169 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCC---CCchh
Confidence 32 22233 6789999988753 222 555666666666555 56677888899999999876554 32222
Q ss_pred -HHHHHHHHHHHhcChHHHhhcccC-cccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCCc
Q psy355 213 -EHLLSALASLIKDSTEAQSLCRLE-PLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSL 277 (285)
Q Consensus 213 -e~al~aL~~l~~~~~~~~~~~~~~-~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~~ 277 (285)
+.++..+. +.... -.|-.. .-.|...|...-+..+ ..++.--||.|.-+-..+|+..++
T Consensus 170 ~alal~Vll-l~~~~----~~cw~e~~~~flali~~va~df~-~~~~a~KfElc~lL~~vl~~~~~e 230 (698)
T KOG2611|consen 170 MALALKVLL-LLVSK----LDCWSETIERFLALIAAVARDFA-VLHNALKFELCHLLSAVLSSEYSE 230 (698)
T ss_pred HHHHHHHHH-HHHHh----cccCcCCHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHhCChHH
Confidence 22222222 22111 133221 2255556665545555 446777788887777777776643
No 173
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.04 E-value=1.3 Score=40.75 Aligned_cols=153 Identities=13% Similarity=0.197 Sum_probs=113.4
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc
Q psy355 27 IIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT 106 (285)
Q Consensus 27 ~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~ 106 (285)
++..|-.+-+..+.-..+-.-|.+++..-.-+.-+....-+..+.++.++++-+|..-|..++-.+-+.++..-..++..
T Consensus 126 il~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~ 205 (335)
T PF08569_consen 126 ILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSN 205 (335)
T ss_dssp HHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34444443344556666677777777665566767777778888899999999999999999999999999877777765
Q ss_pred C---cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC--hHhHHHHHhc-CcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355 107 D---FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN--EECLKEFIKR-DGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 107 g---~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~--~~~~~~f~~~-~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~ 180 (285)
+ .+...-+||.+ ++-.+|+.++--|+.+.-+. -.....++.. .-+..++.+|++++..+|-+|-..+.-++.+
T Consensus 206 n~d~ff~~~~~Ll~s-~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 206 NYDRFFQKYNKLLES-SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp THHHHHHHHHHHCT--SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHccC-CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 4 56677888987 67899999999999998653 3333455543 3578889999999999999998888877665
No 174
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.04 E-value=0.72 Score=43.16 Aligned_cols=141 Identities=16% Similarity=0.252 Sum_probs=100.5
Q ss_pred HHHHHcCCHHHHHh-hhcCCC---HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc-cC--CCHHHHHHHHHH
Q psy355 59 NDFLKMGGLPVLQP-LLEGSD---PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE-HD--SNTTVQVKSLYA 131 (285)
Q Consensus 59 ~~~~~~Gg~~~Lv~-lL~s~~---~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~-~~--~~~~v~~~a~~A 131 (285)
+++.+.|.++.-++ .++++. +.|-..|+.++..+..|.|.+-..+.+.|..+.+++-+. .. ++..+-...-.+
T Consensus 99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~ 178 (379)
T PF06025_consen 99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV 178 (379)
T ss_pred ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 34555455554444 566643 789999999999999999999999999999999999888 32 345666666688
Q ss_pred HHHHhhCChHhHHHHHhcCcHHHHHHhhccCc-HHHHH--HHHHH----HHHHhcCCchHHHHHHHC--CcHHHHHHh
Q psy355 132 VSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK-EKLVI--KSCFL----IACLCTDNNQVKQVLLSM--GMVEQMCVL 200 (285)
Q Consensus 132 Ls~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~-~~v~~--ka~~~----l~~L~~~~~~~~~~l~~~--g~v~~L~~l 200 (285)
|+.||- |....+.|.+.+.++.+.+++.+++ .+.-. ..+.. +-.|+++.|..+..+++. .++..++.+
T Consensus 179 l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~ 255 (379)
T PF06025_consen 179 LSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLVEL 255 (379)
T ss_pred HhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 888887 4667889999999999999998864 22222 23444 445667788887776652 233444444
No 175
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.00 E-value=0.14 Score=36.17 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCc-HHHHHHHHHHHHHHhcCCchHHHHHHHCCc
Q psy355 125 QVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTDNNQVKQVLLSMGM 193 (285)
Q Consensus 125 ~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~-~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~ 193 (285)
.+.|+||++++.. ++....-+.+.+.++.++++....+ ..+|--| |..-.|.....+-.+.+-+.|+
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~-fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTC-FYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHH-HHHHHHHhCCHHHHHHHHHcCC
Confidence 5789999999976 5666665556789999999988654 6665555 4455566777777788877775
No 176
>KOG4151|consensus
Probab=94.81 E-value=0.82 Score=45.81 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=113.0
Q ss_pred HHHHcCCHHHHHhhhcCCCHHHHHHHHHHHH-HHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355 60 DFLKMGGLPVLQPLLEGSDPELRWRAAETVA-DIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD 138 (285)
Q Consensus 60 ~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg-~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~ 138 (285)
..++.||+..|+++..-..+.-+..+..+|. .+. .-.+.. ...++++.+.+..+..-.-.-.++-|+-|++..
T Consensus 499 ~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~----f~~~~~--~~v~~~~~s~~~~d~~~~en~E~L~altnLas~ 572 (748)
T KOG4151|consen 499 KKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKID----FPGERS--YEVVKPLDSALHNDEKGLENFEALEALTNLASI 572 (748)
T ss_pred ccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcC----CCCCch--hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCc
Confidence 4688999999999877666677777777776 221 111111 347888888888755444456788999998888
Q ss_pred ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH-CCcHHHHHHhcccCCCCCccHHHHHHH
Q psy355 139 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS-MGMVEQMCVLIDIEDALDTEMNEHLLS 217 (285)
Q Consensus 139 ~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~-~g~v~~L~~lL~~~~~~d~~~~e~al~ 217 (285)
+....+.+++.-+++.+-..+...++-+|+.++..+.||..+.--..+.+++ ..-++....++... +..+...+..
T Consensus 573 s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~---~E~~~lA~a~ 649 (748)
T KOG4151|consen 573 SESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA---DEKFELAGAG 649 (748)
T ss_pred chhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh---hhHHhhhccc
Confidence 7777777888888888888888889999999999999998876545555555 34455555555555 6667767777
Q ss_pred HHHHHHhcCh
Q psy355 218 ALASLIKDST 227 (285)
Q Consensus 218 aL~~l~~~~~ 227 (285)
++..|+....
T Consensus 650 a~a~I~sv~~ 659 (748)
T KOG4151|consen 650 ALAAITSVVE 659 (748)
T ss_pred cccchhhcch
Confidence 7766665553
No 177
>KOG2137|consensus
Probab=94.72 E-value=0.71 Score=45.87 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=104.1
Q ss_pred HHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355 61 FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 61 ~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~ 140 (285)
.++...+|.|...++..+..+|..++.++++++.--+ -.+++.-++|.+-++....++..++..++-+++.++.
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q--- 458 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ--- 458 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---
Confidence 4556778899999999999999999999999997544 2467777899999997777888999999999999983
Q ss_pred HhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC
Q psy355 141 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE 204 (285)
Q Consensus 141 ~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~ 204 (285)
.++.+.-..-+.++.++.+..++.+.-....+...+....+.- ..++-..++|.++.+...+
T Consensus 459 -~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 459 -RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred -HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence 3333433456678888888889988888888777776654433 3444567788777776665
No 178
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.66 E-value=0.62 Score=39.31 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=87.0
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH---------------hcCcHHHHHHhhccC-----CCHHHHHHHHHHHH
Q psy355 74 LEGSDPELRWRAAETVADIVQNNPFSQNFII---------------QTDFLNLLLTSIEHD-----SNTTVQVKSLYAVS 133 (285)
Q Consensus 74 L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~---------------~~g~l~~L~~LL~~~-----~~~~v~~~a~~ALs 133 (285)
+..+.......++.+|+|+++....+...+- +...+..|+.++..+ ....-.-..++.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 4455566777889999999986665442221 223678888887751 12234456788999
Q ss_pred HHhhCChHhHHHHHhcC--c--HHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH--CCcHHHHHHhcccC
Q psy355 134 CLVRDNEECLKEFIKRD--G--FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS--MGMVEQMCVLIDIE 204 (285)
Q Consensus 134 ~l~r~~~~~~~~f~~~~--g--i~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~--~g~v~~L~~lL~~~ 204 (285)
|+++ .+...+.|++.. . +..|+.++.+.+.-=|.=++.+|.|.|-........+-+ .++++.|+--|..+
T Consensus 84 NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 84 NLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred HhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence 9988 577787787532 3 566777777775555566789999999887655433332 36777777777765
No 179
>KOG1061|consensus
Probab=94.64 E-value=0.3 Score=48.66 Aligned_cols=70 Identities=26% Similarity=0.305 Sum_probs=60.9
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~ 140 (285)
+.++.+++++.++.+|..|+-.++++=.-++. .+...|.++.|..++. ++++.|...|+.|++.|...++
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~---~~~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD---LVEDSGLVDALKDLLS-DSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcCChh---hccccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCC
Confidence 56888899999999999999999998876654 5778999999999999 5778999999999999987665
No 180
>KOG1820|consensus
Probab=94.60 E-value=1.2 Score=45.65 Aligned_cols=173 Identities=14% Similarity=0.153 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCC---HHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHhcCcHHHHH
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGG---LPVLQPL-LEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLL 113 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg---~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~-~q~~v~~~g~l~~L~ 113 (285)
.++..|++.+-..+++.- --...|. +-.+++. +...+..|...|+.+|+-++..... ++.++ .+++|.|+
T Consensus 268 K~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~--~~v~p~ll 342 (815)
T KOG1820|consen 268 KDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA--KNVFPSLL 342 (815)
T ss_pred HHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH--HhhcchHH
Confidence 678889999888887533 1122222 2334442 3457889999999999999986554 33333 46889999
Q ss_pred HhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCC
Q psy355 114 TSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMG 192 (285)
Q Consensus 114 ~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g 192 (285)
.-+.. ....++..+.-++=.++..++. ....+.+..+++++++.++.....++...+.. ++.....---.+
T Consensus 343 d~lke-kk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~ 414 (815)
T KOG1820|consen 343 DRLKE-KKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKT 414 (815)
T ss_pred HHhhh-ccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHH
Confidence 88885 4445554443333333222221 12345678889999999999966666555554 333333333346
Q ss_pred cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 193 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 193 ~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+++.++...... +.++|..++.++..+.+...
T Consensus 415 l~p~~~~~~~D~---~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 415 LVPHLIKHINDT---DKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred HhHHHhhhccCC---cHHHHHHHHHHHHHHHHHhh
Confidence 778888887777 99999999999999887664
No 181
>KOG1058|consensus
Probab=94.40 E-value=3.3 Score=41.68 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=89.1
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
+..+..+|+++++.|+-.|+-.|-++. ++|..-.+ +...++.|+-..++-.++--.+.-|+.+..++....+
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~-- 316 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ-- 316 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH--
Confidence 455667888888888888888877776 56653332 3455666766555556777677777777644444332
Q ss_pred HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc-hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN-QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~-~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
|.+--+++.|++++..+++|+..+.-.|+++.. ...-.+.+..+. +--....++.-++|.-.+.++.+.+..
T Consensus 317 ---~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~----kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 317 ---GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVM----KTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred ---HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHH----hccccccccchHHHHHHHHHHHHHhhc
Confidence 334456788999999999999999988887632 111111111111 110100112345677777777777766
Q ss_pred ChH
Q psy355 226 STE 228 (285)
Q Consensus 226 ~~~ 228 (285)
.|+
T Consensus 390 Fp~ 392 (948)
T KOG1058|consen 390 FPE 392 (948)
T ss_pred ChH
Confidence 664
No 182
>KOG1824|consensus
Probab=94.37 E-value=0.78 Score=47.03 Aligned_cols=154 Identities=10% Similarity=0.100 Sum_probs=99.0
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
.+..++++|...+++|+-.|.+++|-++.--++.|-.- .+..|..-+-+ ..+..|--+.-+|-..+.+-+|....
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~ 122 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSS 122 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCcccc
Confidence 57788999999999999999999999996544333211 23333322222 22344444444444445555655556
Q ss_pred HHhcCcHHHHHHhhcc------CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355 146 FIKRDGFSVLLRCIQS------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 219 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~------~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL 219 (285)
|.....++.+..-|.. +.+.++-.++-.+....+......-. ...+....+..-|.++ -.-+|.++..+|
T Consensus 123 ~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~---R~aVrKkai~~l 198 (1233)
T KOG1824|consen 123 FLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSP---RLAVRKKAITAL 198 (1233)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccCh---HHHHHHHHHHHH
Confidence 6666666555555443 34558888888888777653222222 2245666677777777 788999999999
Q ss_pred HHHHhcChH
Q psy355 220 ASLIKDSTE 228 (285)
Q Consensus 220 ~~l~~~~~~ 228 (285)
+.++..++.
T Consensus 199 ~~la~~~~~ 207 (1233)
T KOG1824|consen 199 GHLASSCNR 207 (1233)
T ss_pred HHHHHhcCH
Confidence 999988763
No 183
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.34 E-value=0.94 Score=46.29 Aligned_cols=132 Identities=17% Similarity=0.234 Sum_probs=94.2
Q ss_pred HHHHHHcCCHHHHHhhhcC-----CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc---cCCC----HHHH
Q psy355 58 ANDFLKMGGLPVLQPLLEG-----SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE---HDSN----TTVQ 125 (285)
Q Consensus 58 a~~~~~~Gg~~~Lv~lL~s-----~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~---~~~~----~~v~ 125 (285)
+..+.+.||+..++.+|.+ ....+....+.++..++. -+.+++++++.|+++.|+..|. .... ..+-
T Consensus 110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence 5567789999999999886 234677778888888885 5889999999999999998775 2222 4565
Q ss_pred HHHHHHHHHHhhC----ChHhHHHHHhcCc--------HHHHHHhhccC----cHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy355 126 VKSLYAVSCLVRD----NEECLKEFIKRDG--------FSVLLRCIQSK----KEKLVIKSCFLIACLCTDNNQVKQVLL 189 (285)
Q Consensus 126 ~~a~~ALs~l~r~----~~~~~~~f~~~~g--------i~~L~~~L~~~----~~~v~~ka~~~l~~L~~~~~~~~~~l~ 189 (285)
.+.+..+-.++.. .......+....| +..+++.+.++ +.++..-.+.+|-+|+-++++..+.++
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv 268 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV 268 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH
Confidence 6666555555432 1112222333444 67777777764 688999999999999999887777666
Q ss_pred H
Q psy355 190 S 190 (285)
Q Consensus 190 ~ 190 (285)
+
T Consensus 269 ~ 269 (802)
T PF13764_consen 269 E 269 (802)
T ss_pred H
Confidence 4
No 184
>KOG1243|consensus
Probab=94.33 E-value=1 Score=44.59 Aligned_cols=210 Identities=12% Similarity=0.152 Sum_probs=119.3
Q ss_pred HHhHHHHHHHHHHhc-CCHHHHHHHHHHHHhccC-CCH--HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCC
Q psy355 3 EANRGFLLDALNSMM-VNVGAELEKIIKTLKENQ-DQK--DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSD 78 (285)
Q Consensus 3 ~e~~~~L~~al~~~~-~d~~~~mk~~l~~l~~~~-~~~--~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~ 78 (285)
+|+++|.++-.+.+. ..+.-..++.+.+|-... ..+ ...+..+-.+.-.. |-+. ...+.+|.|++++.+++
T Consensus 269 ~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~l---d~~e--yq~~i~p~l~kLF~~~D 343 (690)
T KOG1243|consen 269 EEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDL---DEEE--YQVRIIPVLLKLFKSPD 343 (690)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhc---cccc--cccchhhhHHHHhcCcc
Confidence 577777777666554 222222333444443322 211 22333333333333 3222 55678899999999999
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC-hH-----hHHHHHh----
Q psy355 79 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN-EE-----CLKEFIK---- 148 (285)
Q Consensus 79 ~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~-~~-----~~~~f~~---- 148 (285)
..||..=+.=|-. .-+..++.+++.-++|.+..-+.. +++.+|..++-++..++--- .. -.+.|..
T Consensus 344 r~iR~~LL~~i~~---~i~~Lt~~~~~d~I~phv~~G~~D-Tn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d 419 (690)
T KOG1243|consen 344 RQIRLLLLQYIEK---YIDHLTKQILNDQIFPHVALGFLD-TNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPD 419 (690)
T ss_pred hHHHHHHHHhHHH---HhhhcCHHhhcchhHHHHHhhccc-CCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcc
Confidence 9999765554444 445566778888999999988884 78999999999998876310 00 0111111
Q ss_pred -cCcH-------------------------HHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcc
Q psy355 149 -RDGF-------------------------SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLID 202 (285)
Q Consensus 149 -~~gi-------------------------~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~ 202 (285)
.||+ ....+.++++-..-|..+.+.+.....- .-..=+...+++.++-+.-
T Consensus 420 ~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~---~~~~~va~kIlp~l~pl~v 496 (690)
T KOG1243|consen 420 EHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEY---FDQSEVANKILPSLVPLTV 496 (690)
T ss_pred ccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccc---cchhhhhhhcccccccccc
Confidence 1111 2223344444455555555555543221 1112233457777777777
Q ss_pred cCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 203 IEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 203 ~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
.+ +..+|..+..++...+...+
T Consensus 497 d~---e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 497 DP---EKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred Cc---ccchhhHHHHHHHHHHhhhh
Confidence 76 77777777777666555443
No 185
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.20 E-value=0.61 Score=37.96 Aligned_cols=105 Identities=18% Similarity=0.225 Sum_probs=79.2
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-hcCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355 70 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII-QTDFLNLLLTSIE-HDSNTTVQVKSLYAVSCLVRDNEECLKEFI 147 (285)
Q Consensus 70 Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~-~~g~l~~L~~LL~-~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~ 147 (285)
+-.++..++.+-...+..+++.+-+.-|.....++ ..|.++.++.+.. ...+..++..++-+|+.-|-+ . ....++
T Consensus 48 i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~-~~r~~I 125 (157)
T PF11701_consen 48 IESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-K-SCRTFI 125 (157)
T ss_dssp HHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-H-HHHHCC
T ss_pred HHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-H-HHHHHH
Confidence 33455555566788899999999999998766654 6799999999998 336788999999999986653 3 455788
Q ss_pred hcCcHHHHHHhhc-cCcHH-HHHHHHHHHHH
Q psy355 148 KRDGFSVLLRCIQ-SKKEK-LVIKSCFLIAC 176 (285)
Q Consensus 148 ~~~gi~~L~~~L~-~~~~~-v~~ka~~~l~~ 176 (285)
..+|++.|.++++ +++.. +|..|+-.|..
T Consensus 126 ~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 126 SKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 8899999999996 45566 78877766543
No 186
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.20 E-value=3.4 Score=38.66 Aligned_cols=184 Identities=14% Similarity=0.177 Sum_probs=119.3
Q ss_pred HHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCC----------------------------------HHHHHHHHHH
Q psy355 44 ALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSD----------------------------------PELRWRAAET 88 (285)
Q Consensus 44 al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~----------------------------------~~vr~~A~~~ 88 (285)
|+..|.-+++.. +-...|...||+..++..|+.+- ..+...-++.
T Consensus 4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~ 83 (379)
T PF06025_consen 4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF 83 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 455555555544 33456888888888877665211 1223344456
Q ss_pred HHHHhh---CCHHHHHHHHhcCc-HHHHHHhhccCC--CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc-c
Q psy355 89 VADIVQ---NNPFSQNFIIQTDF-LNLLLTSIEHDS--NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ-S 161 (285)
Q Consensus 89 lg~~a~---nn~~~q~~v~~~g~-l~~L~~LL~~~~--~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~-~ 161 (285)
|..+.+ ++...-..+++.+. +..|-..+++.. ...+-..|+..++.++.+-|.....+.++|.++.+++.+. .
T Consensus 84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~ 163 (379)
T PF06025_consen 84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK 163 (379)
T ss_pred HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence 666666 33333334555344 444555566522 3578889999999999999999988888999999999888 4
Q ss_pred ---CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCC----CCCccHHHHHHHHHHHHHhcChH
Q psy355 162 ---KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED----ALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 162 ---~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~----~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
++.++-.-.-.+++.||-++ .-.+.+.+.+.++.+...+.+++ -...+.-...-.++-.|+++.|.
T Consensus 164 ~i~~s~e~l~~lP~~l~AicLN~-~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~ 236 (379)
T PF06025_consen 164 GILPSSEVLTSLPNVLSAICLNN-RGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPS 236 (379)
T ss_pred CCCCcHHHHHHHHHHHhHHhcCH-HHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHH
Confidence 36777777778888888764 56778888899999999888761 00112233334445556666654
No 187
>KOG1240|consensus
Probab=93.92 E-value=1.7 Score=45.83 Aligned_cols=97 Identities=21% Similarity=0.239 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhC----CHHHHHHHHhcCcHHHHH
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN----NPFSQNFIIQTDFLNLLL 113 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n----n~~~q~~v~~~g~l~~L~ 113 (285)
.+-|..||+-|..+...++--..+- -.+|.++-|+..+.+.||..|+.+|..+..+ ++.....+.++ .+|.|-
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LD--RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLD--RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHh--hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhH
Confidence 4678888888888876665333222 3589999999999999999999999887654 22222233333 788888
Q ss_pred HhhccCCCHHHHHHHHHHHHHHhh
Q psy355 114 TSIEHDSNTTVQVKSLYAVSCLVR 137 (285)
Q Consensus 114 ~LL~~~~~~~v~~~a~~ALs~l~r 137 (285)
.|+.......+|..-+..|+-++.
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHH
Confidence 888753444566665666666654
No 188
>KOG1832|consensus
Probab=93.89 E-value=0.21 Score=50.58 Aligned_cols=147 Identities=21% Similarity=0.298 Sum_probs=103.5
Q ss_pred chHHHHHHcCCHHHHHhhhc--------CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--------CcHHHHHHhhcc-
Q psy355 56 DYANDFLKMGGLPVLQPLLE--------GSDPELRWRAAETVADIVQNNPFSQNFIIQT--------DFLNLLLTSIEH- 118 (285)
Q Consensus 56 dna~~~~~~Gg~~~Lv~lL~--------s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~--------g~l~~L~~LL~~- 118 (285)
..|++|.++||+..++.+.. ++..++...|+.+|. +.+--|..|..+... .++..++.--.-
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~-i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLH-IVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhhee-eeEecchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 45889999999999999765 445688888998888 555678888877643 244444332221
Q ss_pred --CCCHHHHHHHHHHHHHHhhCChHh-----------------------------------HHHHHhcCcHHHHHHhhcc
Q psy355 119 --DSNTTVQVKSLYAVSCLVRDNEEC-----------------------------------LKEFIKRDGFSVLLRCIQS 161 (285)
Q Consensus 119 --~~~~~v~~~a~~ALs~l~r~~~~~-----------------------------------~~~f~~~~gi~~L~~~L~~ 161 (285)
..+++++..|+..|-|++.+.|.. ...+...+||..|+.+|+.
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~ 750 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQY 750 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhc
Confidence 137889999999888876653222 3345567899999999985
Q ss_pred C-----cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH--HHHHHhcccC
Q psy355 162 K-----KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV--EQMCVLIDIE 204 (285)
Q Consensus 162 ~-----~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v--~~L~~lL~~~ 204 (285)
. ...+|.-||.+|.-|++. +.+++.+.+.-++ ..+-.++..+
T Consensus 751 k~P~t~aD~IRalAc~~L~GLaR~-~tVrQIltKLpLvt~~~~q~lm~eP 799 (1516)
T KOG1832|consen 751 KNPPTTADCIRALACRVLLGLARD-DTVRQILTKLPLVTNERAQILMAEP 799 (1516)
T ss_pred cCCCCcHHHHHHHHHHHHhccccC-cHHHHHHHhCccccchHHHHHhhCc
Confidence 3 367888899999888765 5688877776665 3455555554
No 189
>KOG4151|consensus
Probab=93.89 E-value=0.76 Score=46.06 Aligned_cols=178 Identities=15% Similarity=0.199 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhhcCcch-HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC
Q psy355 41 CIGALDNLSDYVCSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD 119 (285)
Q Consensus 41 ~~~al~~L~~lv~~~dn-a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~ 119 (285)
..++|.++..|...-+. ...+++--+++-+-.++..+++.+|..|+..+.|+.-..-..-..+++..-=.++|.+....
T Consensus 559 n~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~ 638 (748)
T KOG4151|consen 559 NFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV 638 (748)
T ss_pred HHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh
Confidence 33444444444332221 22477766677777778889999999999999999987666666667744333455544433
Q ss_pred CCHHHHHHHHHHHHHH---hhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355 120 SNTTVQVKSLYAVSCL---VRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 196 (285)
Q Consensus 120 ~~~~v~~~a~~ALs~l---~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~ 196 (285)
.++.....++.++..| ..++-+.... ...|...++.++.+.+..+|......+.++..........+......+.
T Consensus 639 ~~E~~~lA~a~a~a~I~sv~~n~c~~~~~--~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~ 716 (748)
T KOG4151|consen 639 ADEKFELAGAGALAAITSVVENHCSRILE--LLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMEL 716 (748)
T ss_pred hhhHHhhhccccccchhhcchhhhhhHHH--hhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHH
Confidence 4445555555555433 3333332222 3478999999999999999999999999977766667777776666665
Q ss_pred HHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 197 MCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 197 L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
+..+=... ....++.+..+|..+.
T Consensus 717 l~~~~~~~---~a~~~~~~~~~l~~a~ 740 (748)
T KOG4151|consen 717 LSGLQKLN---RAPKREDAAPCLSAAE 740 (748)
T ss_pred HHHHHHhh---hhhhhhhhhhHHHHHH
Confidence 55443333 4556666666665543
No 190
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.87 E-value=7.1 Score=38.34 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=26.8
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNP 97 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~ 97 (285)
+..|-.+|+++....|..|.++|..+++-.|
T Consensus 305 vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 305 VSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 5666678999999999999999999998755
No 191
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.84 E-value=3 Score=37.93 Aligned_cols=153 Identities=20% Similarity=0.254 Sum_probs=97.5
Q ss_pred HHHHhhhcC-CCHHHHHHHHHHHHHHhhCCH--HHHHHHHhcCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHhhC----
Q psy355 68 PVLQPLLEG-SDPELRWRAAETVADIVQNNP--FSQNFIIQTDFLNLLLTSIEH--DSNTTVQVKSLYAVSCLVRD---- 138 (285)
Q Consensus 68 ~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~--~~q~~v~~~g~l~~L~~LL~~--~~~~~v~~~a~~ALs~l~r~---- 138 (285)
.-|+++.++ ....|-.-++.++.|++.-.| .+.+.....++.|. ++.|.. -+++.++...-.-=|.+..+
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~-vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKC-VQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHH-HHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 344555554 345666778888888886442 22333333334443 444432 13444443322222222211
Q ss_pred --------------------------ChHhHHHHHhcC--cHHHHHHhhccCcHH-HHHHHHHHHHHHhcCCchHHHHHH
Q psy355 139 --------------------------NEECLKEFIKRD--GFSVLLRCIQSKKEK-LVIKSCFLIACLCTDNNQVKQVLL 189 (285)
Q Consensus 139 --------------------------~~~~~~~f~~~~--gi~~L~~~L~~~~~~-v~~ka~~~l~~L~~~~~~~~~~l~ 189 (285)
...+.+.|.+.+ .+..|.+.+++..+. .-.-||.=|..+++..|+.+..+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 112345555433 567888888886543 445678888888899999999999
Q ss_pred HCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355 190 SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 190 ~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~ 224 (285)
+-|+=..+++++.++ |++++=.|+.|+..+..
T Consensus 397 Kyg~k~~im~L~nh~---d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 397 KYGVKEIIMNLINHD---DDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhhHHHHHHHhcCC---CchhhHHHHHHHHHHHh
Confidence 999999999999999 99999999999987764
No 192
>KOG1943|consensus
Probab=93.79 E-value=0.82 Score=47.34 Aligned_cols=151 Identities=11% Similarity=0.129 Sum_probs=97.1
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
.+..|+.-|++.+..|||.||+-+|.+++.-|. .+..-++...+.++....+...=--||.||+-+++-.----..
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 456677777889999999999999999998883 2223466777777765443455558999999987643221222
Q ss_pred HHhcCcHHHHHHhhccC--------cHHHHHHHHHHHHHHhcCC-chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHH
Q psy355 146 FIKRDGFSVLLRCIQSK--------KEKLVIKSCFLIACLCTDN-NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLL 216 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~--------~~~v~~ka~~~l~~L~~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al 216 (285)
+. ..+|+++..|.-+ ...+|-.||+++..+.+.. |...+-++..=+-.-|+.-+=.+ +...|..|.
T Consensus 418 l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr---evncRRAAs 492 (1133)
T KOG1943|consen 418 LE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR---EVNCRRAAS 492 (1133)
T ss_pred HH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc---hhhHhHHHH
Confidence 22 3467777766532 4579999999999998873 33232222211112233334444 677888888
Q ss_pred HHHHHHHhc
Q psy355 217 SALASLIKD 225 (285)
Q Consensus 217 ~aL~~l~~~ 225 (285)
.|+...+..
T Consensus 493 AAlqE~VGR 501 (1133)
T KOG1943|consen 493 AALQENVGR 501 (1133)
T ss_pred HHHHHHhcc
Confidence 887766644
No 193
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.77 E-value=3 Score=34.92 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=56.9
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhC---CHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQN---NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL 143 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n---n~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~ 143 (285)
++.++++..+++..+|..|+.+|+.+.+. ||. -++|.|+-|..+ +++.+|..|...+..+...++.-.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts-~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETS-PNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCC-CChHHHHHHHHHHHHHHHHhHHHH
Confidence 46777888899999999999999988763 553 278999998885 789999999999999987776644
Q ss_pred H
Q psy355 144 K 144 (285)
Q Consensus 144 ~ 144 (285)
.
T Consensus 81 ~ 81 (187)
T PF12830_consen 81 E 81 (187)
T ss_pred H
Confidence 3
No 194
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.70 E-value=7.4 Score=38.24 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=54.1
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhcCC--chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355 154 VLLRCIQSKKEKLVIKSCFLIACLCTDN--NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS 231 (285)
Q Consensus 154 ~L~~~L~~~~~~v~~ka~~~l~~L~~~~--~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~ 231 (285)
.|-.-|++.-.-++-+++.+++.+...+ ++..+ ..|..|-.+|+++ ....|=.|++.|..|+...|+.+.
T Consensus 268 fL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~-----~~vs~L~~fL~s~---rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 268 FLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVD-----QTVSSLRTFLKST---RVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHHhcc---hHHHHHHHHHHHHHHHhhCCceee
Confidence 3333444555778888999988887654 33322 3556777888888 888999999999999999999887
Q ss_pred hc
Q psy355 232 LC 233 (285)
Q Consensus 232 ~~ 233 (285)
.|
T Consensus 340 vc 341 (898)
T COG5240 340 VC 341 (898)
T ss_pred ec
Confidence 77
No 195
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.68 E-value=2.4 Score=41.48 Aligned_cols=133 Identities=13% Similarity=0.134 Sum_probs=80.7
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF 102 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~ 102 (285)
-+.-..+|.....+...|.-|-+-+..+... .+.++. ++..++.|...++..||..|.+.|..+|.+|+..-..
T Consensus 22 ~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k 96 (556)
T PF05918_consen 22 EEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK 96 (556)
T ss_dssp HHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence 3334444444444566777777777776655 344443 5788899999999999999999999999998764433
Q ss_pred HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh-h--ccCcHHHHHHHHHHHH
Q psy355 103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC-I--QSKKEKLVIKSCFLIA 175 (285)
Q Consensus 103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~-L--~~~~~~v~~ka~~~l~ 175 (285)
+...|++||.++ ++.....+-.+|..+.+..|...- ..+... + .+++..+|.++.-+|+
T Consensus 97 -----vaDvL~QlL~td-d~~E~~~v~~sL~~ll~~d~k~tL--------~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 97 -----VADVLVQLLQTD-DPVELDAVKNSLMSLLKQDPKGTL--------TGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp -----HHHHHHHHTT----HHHHHHHHHHHHHHHHH-HHHHH--------HHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcc-cHHHHHHHHHHHHHHHhcCcHHHH--------HHHHHHHHhcccCchHHHHHHHHHHH
Confidence 467899999974 556666666888888776665421 112222 2 2456778888775554
No 196
>KOG2274|consensus
Probab=93.66 E-value=9.7 Score=39.17 Aligned_cols=148 Identities=12% Similarity=0.178 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhhcCcchHHHH-HHcCCHHHHHhh-hc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 39 DICIGALDNLSDYVCSIDYANDF-LKMGGLPVLQPL-LE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~-~~~Gg~~~Lv~l-L~-s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
+...-.++.|...| ..|.+... .+...+|.++.+ ++ +++|-|...+-.++-.+.|+ ..|+.- +..-.+|.|++.
T Consensus 545 evl~llmE~Ls~vv-~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~-m~e~~iPslisi 621 (1005)
T KOG2274|consen 545 EVLVLLMEALSSVV-KLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGP-MQERLIPSLISV 621 (1005)
T ss_pred HHHHHHHHHHHHHh-ccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcc-hHHHHHHHHHHH
Confidence 33333344444443 44544433 344556777764 33 68888888888888888873 333332 223489999999
Q ss_pred hccCC---CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh-hccCcHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy355 116 IEHDS---NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC-IQSKKEKLVIKSCFLIACLCTDNNQVKQVLL 189 (285)
Q Consensus 116 L~~~~---~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~-L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~ 189 (285)
+.... ......-|+--|..++|+.|+-...-+-.-.+|++.++ |.++|..+-+.+.-+++.+.+.+++......
T Consensus 622 l~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~ 699 (1005)
T KOG2274|consen 622 LQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWH 699 (1005)
T ss_pred HcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhc
Confidence 98632 25678889999999999987754444434567888887 5567888889999999999887655444333
No 197
>KOG2973|consensus
Probab=93.64 E-value=0.37 Score=43.36 Aligned_cols=107 Identities=11% Similarity=0.152 Sum_probs=77.9
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh--cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHH
Q psy355 110 NLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK--RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV 187 (285)
Q Consensus 110 ~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~--~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~ 187 (285)
--++.++.+ .++.||+.|+.-+.+++.+ ..+.+.. .--++.+.+++...++ -+.|++++.|+.. ++..+..
T Consensus 6 ~elv~ll~~-~sP~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ 78 (353)
T KOG2973|consen 6 VELVELLHS-LSPPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKK 78 (353)
T ss_pred HHHHHHhcc-CChHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHH
Confidence 346778875 6789999999999988776 2333432 2355667777776655 6788999999855 4567778
Q ss_pred HHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 188 LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 188 l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+++. ++..++..+..+ ....-......|.|+++...
T Consensus 79 ll~~-~~k~l~~~~~~p---~~~lad~~cmlL~NLs~~~~ 114 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDP---QSPLADLICMLLSNLSRDDD 114 (353)
T ss_pred HHHH-HHHHHHHHhcCc---ccchHHHHHHHHHHhccCch
Confidence 8877 778888888777 66777777777777776653
No 198
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.64 E-value=0.35 Score=35.72 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=57.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE 141 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~ 141 (285)
+...+..|++|.+.||.+|+..|..+...+. ....--.+++..++..|++ +++-|--.|+-+++.++.-+|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChH
Confidence 4566778899999999999999999998776 1112224678888888886 6778889999999999987776
No 199
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.64 E-value=0.67 Score=37.87 Aligned_cols=142 Identities=15% Similarity=0.179 Sum_probs=82.4
Q ss_pred HHHHHhhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 67 LPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 67 ~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
++.|+++|++ .+..+|..|.++||.+-.=+|...+.+... .+ .--..+......... -...+..+..+.
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~~~~~~~~~~~~~-----l~~~~~~~~~ee 81 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKSSENSNDESTDIS-----LPMMGISPSSEE 81 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccccccccccchhhH-----HhhccCCCchHH
Confidence 4566677776 469999999999999988888755433221 11 000000111111111 122233334455
Q ss_pred HHhcCcHHHHHHhhccCc-HHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 146 FIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~~-~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
+.-...+..|++.|++++ ..-+..+..++.++... +.....++- -++|.++..+.+. +...+|..+.-|..|.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~---~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTC---PDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 666667888888888764 44444556666665533 223334443 3778888888876 6688888777776665
No 200
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=93.54 E-value=1.7 Score=38.59 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=89.6
Q ss_pred HHHcCCHHHHHhhhcCCC----HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355 61 FLKMGGLPVLQPLLEGSD----PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 136 (285)
Q Consensus 61 ~~~~Gg~~~Lv~lL~s~~----~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~ 136 (285)
+.-.+.+|.++.-+.++. ......+|..|+.+|.++. .+.+..+...+....-.......--+++.+.
T Consensus 107 ~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~ 178 (262)
T PF14225_consen 107 FLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLR 178 (262)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 444555666666666665 2445577788888884322 2344555555543222222222333334444
Q ss_pred hCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHH
Q psy355 137 RDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLL 216 (285)
Q Consensus 137 r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al 216 (285)
.++-+.. +...+..|+++|.++..-+|.++..+|..+...-+-.+. ...+++.++.++|.++ +-..|+
T Consensus 179 ~~f~P~~----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~------~~~eAL 246 (262)
T PF14225_consen 179 EAFFPDH----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTD------LWMEAL 246 (262)
T ss_pred HHhCchh----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCc------cHHHHH
Confidence 3332211 123456789999999999999999999999876322222 4456899999999876 566788
Q ss_pred HHHHHHHhcC
Q psy355 217 SALASLIKDS 226 (285)
Q Consensus 217 ~aL~~l~~~~ 226 (285)
..|..+...+
T Consensus 247 ~VLd~~v~~s 256 (262)
T PF14225_consen 247 EVLDEIVTRS 256 (262)
T ss_pred HHHHHHHhhc
Confidence 8887777655
No 201
>KOG2956|consensus
Probab=93.44 E-value=7.4 Score=37.14 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=114.2
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhc-CcchHHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhC
Q psy355 18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVC-SIDYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQN 95 (285)
Q Consensus 18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~-~~dna~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~n 95 (285)
.+..+.++..+.-+++.+ ..+++..|+.+|-.+.. +----+.=+..-.+..++..|.. .+..++.-|+++|+.++++
T Consensus 282 ~~~~~~v~~~l~~~~g~e-~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~ 360 (516)
T KOG2956|consen 282 VDQSALVADLLKEISGSE-RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN 360 (516)
T ss_pred cchhHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh
Confidence 344555666665555552 34778888887777653 32222221111124455666654 8899999999999999998
Q ss_pred CHHHHHHHHhc--CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHH
Q psy355 96 NPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL 173 (285)
Q Consensus 96 n~~~q~~v~~~--g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~ 173 (285)
.|. .+.+. =++..++.--.. +.+.+-..|.-+.+.++..+.+-+. + ..+..++.+.|...-.-+.-+
T Consensus 361 Q~~---~l~DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~~-I------~~i~~~Ilt~D~~~~~~~iKm 429 (516)
T KOG2956|consen 361 QPA---RLFDSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQC-I------VNISPLILTADEPRAVAVIKM 429 (516)
T ss_pred chH---hhhchHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchhH-H------HHHhhHHhcCcchHHHHHHHH
Confidence 664 22221 244444444443 4556666677776666655544332 2 233444444555544445555
Q ss_pred HHHHhcCC-chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 174 IACLCTDN-NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 174 l~~L~~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
+..++..- .+-.-.++ ..+.|.+++--.+. ...+|..|..+|.++...
T Consensus 430 ~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S~---SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 430 LTKLFERLSAEELLNLL-PDIAPCVIQAYDST---SSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHHHhhcCHHHHHHhh-hhhhhHHHHHhcCc---hHHhhhhHHHhHHHHHHH
Confidence 66666542 12222222 36788888888888 999999999999998743
No 202
>KOG2933|consensus
Probab=93.44 E-value=0.9 Score=40.90 Aligned_cols=144 Identities=16% Similarity=0.125 Sum_probs=98.3
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc--hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhC
Q psy355 18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSID--YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN 95 (285)
Q Consensus 18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d--na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n 95 (285)
.++-..+++++..|...++ +.++++|.-+..|.+-.- ....++ -.+..+++-++++...|-..|+.+++.+.++
T Consensus 84 d~p~~al~~~l~~L~s~dW--~~~vdgLn~irrLs~fh~e~l~~~L~--~vii~vvkslKNlRS~VsraA~~t~~difs~ 159 (334)
T KOG2933|consen 84 DDPEAALKQALKKLSSDDW--EDKVDGLNSIRRLSEFHPESLNPMLH--EVIIAVVKSLKNLRSAVSRAACMTLADIFSS 159 (334)
T ss_pred CcHHHHHHHHHHHhchHHH--HHHhhhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 4556667777777766554 667777777776654321 111222 2466777888999999999999999999985
Q ss_pred -CHHHHHHHHhcCcHHHHHHhhcc---CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHH
Q psy355 96 -NPFSQNFIIQTDFLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSC 171 (285)
Q Consensus 96 -n~~~q~~v~~~g~l~~L~~LL~~---~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~ 171 (285)
|..+.+ .+..++..|.+ .++--|+..|--||-.++.+-.++. .++.|+.++++..++++.+++
T Consensus 160 ln~~i~~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~n~r~r~~a~ 226 (334)
T KOG2933|consen 160 LNNSIDQ------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHSNPRVRAKAA 226 (334)
T ss_pred HHHHHHH------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhhchhhhhhhh
Confidence 333343 34444444432 2345789999999999998765542 356677778889999999998
Q ss_pred HHHHHHh
Q psy355 172 FLIACLC 178 (285)
Q Consensus 172 ~~l~~L~ 178 (285)
....+..
T Consensus 227 ~~~~~~v 233 (334)
T KOG2933|consen 227 LCFSRCV 233 (334)
T ss_pred ccccccc
Confidence 7766554
No 203
>KOG2062|consensus
Probab=93.16 E-value=1.1 Score=44.71 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=94.5
Q ss_pred HcCCHHHHHh-hhcCCCHHHHHHHHHHHHHH--hhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC
Q psy355 63 KMGGLPVLQP-LLEGSDPELRWRAAETVADI--VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN 139 (285)
Q Consensus 63 ~~Gg~~~Lv~-lL~s~~~~vr~~A~~~lg~~--a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~ 139 (285)
..+...++++ ++...+|-+|......++-. .++| .+++..|+..-=++.+..||+.|+-||+-++...
T Consensus 516 rqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 516 RQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred hhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecC
Confidence 3446666766 78889999998888777643 3333 3567778877555788899999999999988777
Q ss_pred hHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHH
Q psy355 140 EECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA 218 (285)
Q Consensus 140 ~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~a 218 (285)
|.+.- ..+.+|+. .++-||--|+.++.-.|.+.- .+. ++..|-.+...+ ..-+|.-|+-+
T Consensus 587 p~~~~---------s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~e------Ai~lLepl~~D~---~~fVRQgAlIa 647 (929)
T KOG2062|consen 587 PEQLP---------STVSLLSESYNPHVRYGAAMALGIACAGTG-LKE------AINLLEPLTSDP---VDFVRQGALIA 647 (929)
T ss_pred hhhch---------HHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHH------HHHHHhhhhcCh---HHHHHHHHHHH
Confidence 76543 33566664 489999999999998887632 111 222233333444 55688888888
Q ss_pred HHHHHhcC
Q psy355 219 LASLIKDS 226 (285)
Q Consensus 219 L~~l~~~~ 226 (285)
+..|+-.+
T Consensus 648 ~amIm~Q~ 655 (929)
T KOG2062|consen 648 LAMIMIQQ 655 (929)
T ss_pred HHHHHHhc
Confidence 88887555
No 204
>KOG4535|consensus
Probab=93.13 E-value=0.33 Score=46.24 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=66.4
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh----CChH---hHHH
Q psy355 73 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR----DNEE---CLKE 145 (285)
Q Consensus 73 lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r----~~~~---~~~~ 145 (285)
|=.|.+.-++..|.++++-.+=+...-++...-..+...++..|.+ +.-..|.|+.|++|||+. +.|. +...
T Consensus 399 C~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR 477 (728)
T KOG4535|consen 399 CNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGNITDALIVNMPTPDSFQER 477 (728)
T ss_pred ccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHH
Confidence 4456667788999999987775443334443444566666666663 457899999999999864 3343 3444
Q ss_pred HHhcCcHHHHHHh-hc-c-CcHHHHHHHHHHHHHHhc
Q psy355 146 FIKRDGFSVLLRC-IQ-S-KKEKLVIKSCFLIACLCT 179 (285)
Q Consensus 146 f~~~~gi~~L~~~-L~-~-~~~~v~~ka~~~l~~L~~ 179 (285)
|+.. -+..+++. .. + +..||+.+|..++.++..
T Consensus 478 ~sg~-ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 478 FSGL-LLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHH-HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 4411 11222222 11 2 368999999999999864
No 205
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.98 E-value=6.9 Score=35.53 Aligned_cols=137 Identities=15% Similarity=0.210 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhcCc---chHHHHHHcCCHHHHHhhhcC--CCHHHHHHHHHHHHHHh---hCCHHHHHHHHhcCcHH
Q psy355 39 DICIGALDNLSDYVCSI---DYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIV---QNNPFSQNFIIQTDFLN 110 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~---dna~~~~~~Gg~~~Lv~lL~s--~~~~vr~~A~~~lg~~a---~nn~~~q~~v~~~g~l~ 110 (285)
++..-|+..+.-++=++ +.+..+.+ ...|+|.+.+.. ..+.+|..++.+||-++ .+.+......++ .+.
T Consensus 101 ~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le 177 (309)
T PF05004_consen 101 EEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLE 177 (309)
T ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHH
Confidence 45555666666554442 45666655 346778787764 45677788887887653 344433332212 333
Q ss_pred HHHHh--hcc---------CCCHHHHHHHHHHHHHHhhCChHh-HHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355 111 LLLTS--IEH---------DSNTTVQVKSLYAVSCLVRDNEEC-LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC 178 (285)
Q Consensus 111 ~L~~L--L~~---------~~~~~v~~~a~~ALs~l~r~~~~~-~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~ 178 (285)
.++.. ++. .+++.+...|+.+-+-++..-|.. ..... ...++.|..+|.+++..||..|.-+|.-|.
T Consensus 178 ~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 178 SIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33322 222 123578888988888887665552 22332 346899999999999999999988887654
Q ss_pred c
Q psy355 179 T 179 (285)
Q Consensus 179 ~ 179 (285)
.
T Consensus 257 E 257 (309)
T PF05004_consen 257 E 257 (309)
T ss_pred H
Confidence 3
No 206
>KOG1060|consensus
Probab=92.84 E-value=5 Score=40.66 Aligned_cols=138 Identities=16% Similarity=0.171 Sum_probs=93.4
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
++-+..+.++.+.++...|..+||.||+++-..... ++.-|+.|+++ .+..|...|+..|-.++..+|..-..+
T Consensus 394 LrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~t-----CL~gLv~Llss-hde~Vv~eaV~vIk~Llq~~p~~h~~i 467 (968)
T KOG1060|consen 394 LRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDT-----CLNGLVQLLSS-HDELVVAEAVVVIKRLLQKDPAEHLEI 467 (968)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhH-----HHHHHHHHHhc-ccchhHHHHHHHHHHHHhhChHHHHHH
Confidence 445556777888899999999999999988776655 56679999997 578899999999999998777654333
Q ss_pred HhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 147 IKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 147 ~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
+..|.+++.+- -+..|.-..|+++..|..-|... -.++..+++-..+. ...++-.+|..-..+.
T Consensus 468 -----i~~La~lldti~vp~ARA~IiWLige~~e~vpri~-----PDVLR~laksFs~E---~~evKlQILnL~aKLy 532 (968)
T KOG1060|consen 468 -----LFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIA-----PDVLRKLAKSFSDE---GDEVKLQILNLSAKLY 532 (968)
T ss_pred -----HHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhc-----hHHHHHHHHhhccc---cchhhHHHHHhhhhhe
Confidence 44566666553 46777777899887776533211 12333444444444 5555555554444443
No 207
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.64 Score=45.20 Aligned_cols=105 Identities=10% Similarity=0.147 Sum_probs=72.2
Q ss_pred HHHHcCC---HHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHH
Q psy355 60 DFLKMGG---LPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 135 (285)
Q Consensus 60 ~~~~~Gg---~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l 135 (285)
.++..|- +..|+.+ .+..+.+||..|.-+||-+|-.. ...++..+++|..+.+..||.-.+.||+-.
T Consensus 543 Ay~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGia 613 (926)
T COG5116 543 AYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIA 613 (926)
T ss_pred HHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhh
Confidence 3444443 3334443 34577888888888888777543 346778888888777888998888888877
Q ss_pred hhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355 136 VRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 136 ~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~ 180 (285)
|.|.-.+. .+.+|-.++..+..=||+.|+-+++-++..
T Consensus 614 cag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 614 CAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred hcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence 77654322 234556667777888888888888876654
No 208
>KOG1240|consensus
Probab=92.73 E-value=11 Score=40.01 Aligned_cols=209 Identities=16% Similarity=0.190 Sum_probs=134.0
Q ss_pred CCHHHHHHHHHHHHhccCC-C-HHHHHHHHHHHHHhhcC---c--chHHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHH
Q psy355 18 VNVGAELEKIIKTLKENQD-Q-KDICIGALDNLSDYVCS---I--DYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETV 89 (285)
Q Consensus 18 ~d~~~~mk~~l~~l~~~~~-~-~~~~~~al~~L~~lv~~---~--dna~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~l 89 (285)
.++-..+.+.++.+-.-.. + .+.+..|+..|.+++.. + .+|+-|.+- .+|.|-.++.. ....||..-|..|
T Consensus 454 i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnl 532 (1431)
T KOG1240|consen 454 IDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNL 532 (1431)
T ss_pred cchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhH
Confidence 6777777887776644442 2 37788888888887643 3 345555442 36777777776 6678888888888
Q ss_pred HHHhhCCHHHHHHHH----------------------------hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC---
Q psy355 90 ADIVQNNPFSQNFII----------------------------QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD--- 138 (285)
Q Consensus 90 g~~a~nn~~~q~~v~----------------------------~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~--- 138 (285)
+-+|..--..+.... -.++=.....||. ++++.||...+-+|.-+|.-
T Consensus 533 a~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLls-d~~~~Vkr~Lle~i~~LC~FFGk 611 (1431)
T KOG1240|consen 533 AQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLS-DSPPIVKRALLESIIPLCVFFGK 611 (1431)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHhhh
Confidence 887732111111100 0112233445666 45678888888888887631
Q ss_pred ---Ch---------------HhHHHHH---------------hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHH
Q psy355 139 ---NE---------------ECLKEFI---------------KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK 185 (285)
Q Consensus 139 ---~~---------------~~~~~f~---------------~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~ 185 (285)
|. .-.-+|+ +...+|+|.+.|.++.+-|..+|..+++.|+..+--.+
T Consensus 612 ~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K 691 (1431)
T KOG1240|consen 612 EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRK 691 (1431)
T ss_pred cccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccch
Confidence 10 0122232 23456788888999999999999999999988754333
Q ss_pred HHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhc
Q psy355 186 QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLC 233 (285)
Q Consensus 186 ~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~ 233 (285)
..++ .+++....+|-.| +.=+|..++..+..+...-..+-..|
T Consensus 692 ~~v~--~i~~~v~PlL~hP---N~WIR~~~~~iI~~~~~~ls~advyc 734 (1431)
T KOG1240|consen 692 PAVK--DILQDVLPLLCHP---NLWIRRAVLGIIAAIARQLSAADVYC 734 (1431)
T ss_pred HHHH--HHHHhhhhheeCc---hHHHHHHHHHHHHHHHhhhhhhhheE
Confidence 3333 3666777788888 88899999999888876554433344
No 209
>KOG1077|consensus
Probab=92.73 E-value=2.3 Score=42.46 Aligned_cols=151 Identities=14% Similarity=0.165 Sum_probs=99.8
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
|.---++||+++--.=+.-.-.++.-+...|...-+.+ +..+-+=|.+ .++...--|+..|+|+ |.....++
T Consensus 75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klv-----in~iknDL~s-rn~~fv~LAL~~I~ni--G~re~~ea 146 (938)
T KOG1077|consen 75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLV-----INSIKNDLSS-RNPTFVCLALHCIANI--GSREMAEA 146 (938)
T ss_pred chHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHH-----HHHHHhhhhc-CCcHHHHHHHHHHHhh--ccHhHHHH
Confidence 34455677877544334344444444444443322222 2223333332 4667778889999997 44555666
Q ss_pred HHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 146 FIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
|. .-++ ++|-++ ..-+|+||+.++-.|....|+.. --.++..+++.+|... +-.+...+...+..|+
T Consensus 147 ~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~~W~~riv~LL~D~---~~gv~ta~~sLi~~lv 215 (938)
T KOG1077|consen 147 FA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPGEWAQRIVHLLDDQ---HMGVVTAATSLIEALV 215 (938)
T ss_pred hh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc---ChhhHHHHHHHHhCcc---ccceeeehHHHHHHHH
Confidence 65 4444 445554 47899999999999999887543 2347899999999988 8888888999999999
Q ss_pred hcChHHHhhccc
Q psy355 224 KDSTEAQSLCRL 235 (285)
Q Consensus 224 ~~~~~~~~~~~~ 235 (285)
+..|+.+..|-.
T Consensus 216 k~~p~~yk~~~~ 227 (938)
T KOG1077|consen 216 KKNPESYKTCLP 227 (938)
T ss_pred HcCCHHHhhhHH
Confidence 999988877743
No 210
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.72 E-value=1.1 Score=35.26 Aligned_cols=96 Identities=8% Similarity=0.077 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC
Q psy355 126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE 204 (285)
Q Consensus 126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~ 204 (285)
-.....|+.+++..+.... .++..|.+-|+++++.++..|..++-.++.+ ++.+...+.+..++..|+.++...
T Consensus 18 ~~~il~icd~I~~~~~~~k-----~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~ 92 (133)
T cd03561 18 WALNLELCDLINLKPNGPK-----EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS 92 (133)
T ss_pred HHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC
Confidence 4456667777776533322 2456777888899999999999999988877 455777787878998899999752
Q ss_pred CCCCccHHHHHHHHHHHHHhcC
Q psy355 205 DALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 205 ~~~d~~~~e~al~aL~~l~~~~ 226 (285)
...+..++.+++..+.......
T Consensus 93 ~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 93 PKYDPKVREKALELILAWSESF 114 (133)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 1237889999999998876544
No 211
>KOG1077|consensus
Probab=92.54 E-value=3.4 Score=41.30 Aligned_cols=174 Identities=18% Similarity=0.242 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhhcCcchH-HH----HHHcCC-HHHHHhhhc----CCCHHHHHHHHHHHHHHh---h---CCHHHHHHHH
Q psy355 41 CIGALDNLSDYVCSIDYA-ND----FLKMGG-LPVLQPLLE----GSDPELRWRAAETVADIV---Q---NNPFSQNFII 104 (285)
Q Consensus 41 ~~~al~~L~~lv~~~dna-~~----~~~~Gg-~~~Lv~lL~----s~~~~vr~~A~~~lg~~a---~---nn~~~q~~v~ 104 (285)
.-.|+..|.++|-..+.. .+ |+..-= ...++++|+ -.++..|.+-..++-.+. + .+..+|+...
T Consensus 226 ~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na 305 (938)
T KOG1077|consen 226 LPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNA 305 (938)
T ss_pred HHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhh
Confidence 335566666666443332 11 111110 123455554 256788888877777664 3 1223444444
Q ss_pred hcCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHh------------------HHHHHhcCcHHHHHHhhc-cCcH
Q psy355 105 QTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEEC------------------LKEFIKRDGFSVLLRCIQ-SKKE 164 (285)
Q Consensus 105 ~~g~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~------------------~~~f~~~~gi~~L~~~L~-~~~~ 164 (285)
++-++--.+++..+ +++++.-.+|+.+|+.+..+-..+ ++++-.+ ...++..|+ ..|.
T Consensus 306 ~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDv 383 (938)
T KOG1077|consen 306 KNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDV 383 (938)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccch
Confidence 44455555555443 455677888888888877664443 2222222 567788888 4689
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 165 KLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 165 ~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
.+|++|+-+++.+|.... .. .+|.-|.+.|.+- |..+||-...=+.-|+...
T Consensus 384 SirrravDLLY~mcD~~N--ak-----~IV~elLqYL~tA---d~sireeivlKvAILaEKy 435 (938)
T KOG1077|consen 384 SIRRRAVDLLYAMCDVSN--AK-----QIVAELLQYLETA---DYSIREEIVLKVAILAEKY 435 (938)
T ss_pred HHHHHHHHHHHHHhchhh--HH-----HHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHh
Confidence 999999999999998642 11 2455666777777 7777766544444444433
No 212
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=92.48 E-value=2.6 Score=38.10 Aligned_cols=134 Identities=13% Similarity=0.145 Sum_probs=95.4
Q ss_pred HHHHHHhcCcHHHHHHhhcc------CC----------------CHHHHHHHHHHHHHHhhCChHhH-------------
Q psy355 99 SQNFIIQTDFLNLLLTSIEH------DS----------------NTTVQVKSLYAVSCLVRDNEECL------------- 143 (285)
Q Consensus 99 ~q~~v~~~g~l~~L~~LL~~------~~----------------~~~v~~~a~~ALs~l~r~~~~~~------------- 143 (285)
+|..+.+.|.+|.|-+++++ .+ +..+|..-+..+.+++.++....
T Consensus 1 vq~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF12463_consen 1 VQTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES 80 (303)
T ss_pred ChHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence 37788999999999988874 11 12478888888888887442211
Q ss_pred ------HHHH--hcCcHHHHHHhhcc--CcHHHHHHHHHHHHHHhcCCch--HHHHHHHCCcHHHHHHhcccCCCCCccH
Q psy355 144 ------KEFI--KRDGFSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQ--VKQVLLSMGMVEQMCVLIDIEDALDTEM 211 (285)
Q Consensus 144 ------~~f~--~~~gi~~L~~~L~~--~~~~v~~ka~~~l~~L~~~~~~--~~~~l~~~g~v~~L~~lL~~~~~~d~~~ 211 (285)
.... +.|-+..+++.+.. .+...|-.-+.++-+++++.+. .+.++.+.|.++.++.-+-++...+..+
T Consensus 81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v 160 (303)
T PF12463_consen 81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEV 160 (303)
T ss_pred cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHH
Confidence 0011 23445566666654 3788899999999999998554 5668889999999998777652223468
Q ss_pred HHHHHHHHHHHHhcChHHHhh
Q psy355 212 NEHLLSALASLIKDSTEAQSL 232 (285)
Q Consensus 212 ~e~al~aL~~l~~~~~~~~~~ 232 (285)
....-..|+.+.+.++.....
T Consensus 161 ~Q~~FDLLGELiK~n~~~f~~ 181 (303)
T PF12463_consen 161 LQSNFDLLGELIKFNRDAFQR 181 (303)
T ss_pred HHHHHHHHHHHHCCCHHHHHH
Confidence 889999999999999876543
No 213
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.38 E-value=1.4 Score=39.71 Aligned_cols=111 Identities=17% Similarity=0.247 Sum_probs=80.4
Q ss_pred CcHHHHH-HhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchH
Q psy355 107 DFLNLLL-TSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQV 184 (285)
Q Consensus 107 g~l~~L~-~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~ 184 (285)
+.+..|+ .-+++ +++.+|..|+-+||-.+--+...... .++.+.+.++.++..++..|+.++..++.. +...
T Consensus 26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4555555 45665 57899999999999766544432222 356788888878999999999999998764 3222
Q ss_pred HHHHH-------HCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 185 KQVLL-------SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 185 ~~~l~-------~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
..... ...+++.+.+.|.+. +++++..+..++..|+-.+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSE---NPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhcC
Confidence 22222 246778888889888 8899999999999988665
No 214
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.37 E-value=5.3 Score=39.27 Aligned_cols=129 Identities=15% Similarity=0.136 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355 38 KDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 116 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL 116 (285)
.+..+.-+..+-.+--+-| ...+|+. |-+..+++-+.+++..||.+.+.+|+.++.+-... +.++-+|.+..|.+-+
T Consensus 64 ~dRil~fl~~f~~Y~~~~dpeg~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~ 141 (885)
T COG5218 64 PDRILSFLKRFFEYDMPDDPEGEELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERL 141 (885)
T ss_pred HHHHHHHHHHHHHhcCCCChhhhHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHH
Confidence 3445555555544332223 2356663 66778888889999999999999999888654433 3456677777777655
Q ss_pred ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHH
Q psy355 117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLI 174 (285)
Q Consensus 117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l 174 (285)
-. ..+.||..|+.+|+..-.. ....+.++ ...|+.+++.+ +..||+-|..-|
T Consensus 142 ~D-RE~~VR~eAv~~L~~~Qe~-~~neen~~----~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 142 FD-REKAVRREAVKVLCYYQEM-ELNEENRI----VNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred hc-chHHHHHHHHHHHHHHHhc-cCChHHHH----HHHHHHHHhcCcHHHHHHHHHHHe
Confidence 42 4679999999999987432 22222233 23666777764 678888665433
No 215
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.28 E-value=2.8 Score=33.56 Aligned_cols=93 Identities=12% Similarity=0.217 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCC
Q psy355 127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIED 205 (285)
Q Consensus 127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~ 205 (285)
...-.|+.+++..+.+. ..++..|.+=|+++++.++..|..++-.++.+ ++.+...+.+.+++..|+.++...
T Consensus 23 ~~ileicD~In~~~~~~-----k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~- 96 (142)
T cd03569 23 ASILEICDMIRSKDVQP-----KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTT- 96 (142)
T ss_pred HHHHHHHHHHhCCCCCH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHccc-
Confidence 34445666666543322 23456777788889999999999999988887 677888888999999999999742
Q ss_pred CCCccHHHHHHHHHHHHHhcC
Q psy355 206 ALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 206 ~~d~~~~e~al~aL~~l~~~~ 226 (285)
.++.++++++..+..-....
T Consensus 97 -~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 97 -KNEEVRQKILELIQAWALAF 116 (142)
T ss_pred -CCHHHHHHHHHHHHHHHHHh
Confidence 37899999999998876443
No 216
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.19 E-value=2.8 Score=41.94 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=107.2
Q ss_pred CCHHHHHh-hhcC----CCHHHHHHHHHHHHHHhh-CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355 65 GGLPVLQP-LLEG----SDPELRWRAAETVADIVQ-NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD 138 (285)
Q Consensus 65 Gg~~~Lv~-lL~s----~~~~vr~~A~~~lg~~a~-nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~ 138 (285)
|-+.|+|. ...+ .++.++..|--.+..+.- .+..|-+ -+|.|+..+...++|.+|..|+-+++.++--
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e------hlpllIt~mek~p~P~IR~NaVvglgD~~vc 964 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE------HLPLLITSMEKHPIPRIRANAVVGLGDFLVC 964 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHhhCCCcceeccceeecccccee
Confidence 44555554 4443 788999988888887543 3444433 6899999999778899999999999987653
Q ss_pred ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHH
Q psy355 139 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA 218 (285)
Q Consensus 139 ~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~a 218 (285)
+ ..+++. --..|.+-|.+.+..||+.+...+.+|.-.+ .+--.|-++.++.+|..+ |..+.+.|-..
T Consensus 965 f----N~~~de-~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~de---da~Isdmar~f 1031 (1128)
T COG5098 965 F----NTTADE-HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDE---DAEISDMARHF 1031 (1128)
T ss_pred h----hhhhHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCC---cchHHHHHHHH
Confidence 2 334432 2346677788889999999999999886543 222358889999999999 99999999888
Q ss_pred HHHHHhcChH
Q psy355 219 LASLIKDSTE 228 (285)
Q Consensus 219 L~~l~~~~~~ 228 (285)
+..++.....
T Consensus 1032 ft~~a~KdNt 1041 (1128)
T COG5098 1032 FTQIAKKDNT 1041 (1128)
T ss_pred HHHHHhcccc
Confidence 8888876653
No 217
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=92.18 E-value=0.3 Score=37.06 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHH
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWR 84 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~ 84 (285)
-+.-..+..|..+....+.=..|+++|+++.|+.||.|++.+|...
T Consensus 61 ~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 61 VDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 4566778888888888888888999999999999999999987653
No 218
>KOG2611|consensus
Probab=92.12 E-value=11 Score=36.15 Aligned_cols=120 Identities=19% Similarity=0.200 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHhhcCcc--hHH--HHHHcCCHHHHHhhhcC-------CCHHHHHHHHHHHHHHhhCCHHHH--HHH
Q psy355 37 QKDICIGALDNLSDYVCSID--YAN--DFLKMGGLPVLQPLLEG-------SDPELRWRAAETVADIVQNNPFSQ--NFI 103 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~~d--na~--~~~~~Gg~~~Lv~lL~s-------~~~~vr~~A~~~lg~~a~nn~~~q--~~v 103 (285)
.|+++..||--...+|.+-| -++ .+.+.=|++.+-+||.+ |+.-.+.-+..+++..|+. |+.. ..+
T Consensus 24 ~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-pElAsh~~~ 102 (698)
T KOG2611|consen 24 RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-PELASHEEM 102 (698)
T ss_pred ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-hhhccCHHH
Confidence 36889999998888987644 333 36667789999999875 2345677888888888864 4322 123
Q ss_pred HhcCcHHHHHHhhccCCCHH------HHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc
Q psy355 104 IQTDFLNLLLTSIEHDSNTT------VQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ 160 (285)
Q Consensus 104 ~~~g~l~~L~~LL~~~~~~~------v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~ 160 (285)
+ ..||.|+..++...++. +...+-..|- .+.++++..+..+..||++.+-+.-.
T Consensus 103 v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~-~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 103 V--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLY-LVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred H--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHH-HHhcCCchhHHHHhcCchHHHHHHHh
Confidence 2 46899999988633322 3344444443 34556888999999999999976533
No 219
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.06 E-value=4.2 Score=35.20 Aligned_cols=148 Identities=16% Similarity=0.238 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhc-----CCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCcHHHH
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE-----GSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLL 112 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~-----s~~~~vr~~A~~~lg~~a~nn~-~~q~~v~~~g~l~~L 112 (285)
.....||.-|..++...+...-|.+...--.+.++|. ++..-+|..++-+||.+++|.. .+-..+....++|.+
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 4577899999999988888888887763334445554 2456799999999999999765 455556678999999
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHhhCChHh------HHHHHhcC-cHH-HHHHhhccCcHHHHHHHHHHHHHHhcCCchH
Q psy355 113 LTSIEHDSNTTVQVKSLYAVSCLVRDNEEC------LKEFIKRD-GFS-VLLRCIQSKKEKLVIKSCFLIACLCTDNNQV 184 (285)
Q Consensus 113 ~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~------~~~f~~~~-gi~-~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~ 184 (285)
+++... .++.-+.-|++-+.-+..+...- .+.|...+ .+. ...++.+.+..++.+.+..+--.|+ .+|+.
T Consensus 195 LrIme~-gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs-d~p~a 272 (315)
T COG5209 195 LRIMEL-GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS-DKPHA 272 (315)
T ss_pred HHHHHh-hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec-CCHhH
Confidence 999997 44566667777777766543221 22233211 122 2234455567888877766554443 34555
Q ss_pred HHHH
Q psy355 185 KQVL 188 (285)
Q Consensus 185 ~~~l 188 (285)
++.+
T Consensus 273 R~lL 276 (315)
T COG5209 273 RALL 276 (315)
T ss_pred HHHH
Confidence 5444
No 220
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.01 E-value=1.4 Score=43.65 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhhcCcchH----------HHHHHcCCHHHHHhhh
Q psy355 7 GFLLDALNSMMVNVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYVCSIDYA----------NDFLKMGGLPVLQPLL 74 (285)
Q Consensus 7 ~~L~~al~~~~~d~~~~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~~~dna----------~~~~~~Gg~~~Lv~lL 74 (285)
+||............+.|+...+.+..+. .....+..|+-.+..++...-.. ...+....++.|...|
T Consensus 416 ~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l 495 (618)
T PF01347_consen 416 QLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQEL 495 (618)
T ss_dssp HHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHH
Confidence 34433333332344666666666665443 22344555555555554321111 1122223455666655
Q ss_pred c----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC--CCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355 75 E----GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD--SNTTVQVKSLYAVSCLVRDNEECLKEFIK 148 (285)
Q Consensus 75 ~----s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~--~~~~v~~~a~~ALs~l~r~~~~~~~~f~~ 148 (285)
. ..+..-+..++++|||+-. | ..++.|..++... .+..+|..|+||+..++..+|.....+
T Consensus 496 ~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~-- 562 (618)
T PF01347_consen 496 KEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREI-- 562 (618)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHH--
T ss_pred HHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHH--
Confidence 5 4667888999999999853 2 3678888888753 367999999999999988777654433
Q ss_pred cCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHH
Q psy355 149 RDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLS 217 (285)
Q Consensus 149 ~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~ 217 (285)
+..++.+. +..+|..|..+|- ..+|.. ..+..++..|..+ .+.++.-.+..
T Consensus 563 ------l~~I~~n~~e~~EvRiaA~~~lm---~~~P~~-------~~l~~i~~~l~~E--~~~QV~sfv~S 615 (618)
T PF01347_consen 563 ------LLPIFMNTTEDPEVRIAAYLILM---RCNPSP-------SVLQRIAQSLWNE--PSNQVASFVYS 615 (618)
T ss_dssp ------HHHHHH-TTS-HHHHHHHHHHHH---HT---H-------HHHHHHHHHHTT---S-HHHHHHHHH
T ss_pred ------HHHHhcCCCCChhHHHHHHHHHH---hcCCCH-------HHHHHHHHHHhhC--chHHHHHHHHH
Confidence 46666653 6788887765544 344433 3566677777654 24444444433
No 221
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=1.5 Score=42.74 Aligned_cols=133 Identities=12% Similarity=0.156 Sum_probs=93.5
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355 69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK 148 (285)
Q Consensus 69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~ 148 (285)
.+-++|.+.++-+|-..+..+|.+-.+.. +.|++..|+..--++.+..||+.|+-||+-+|...+..
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~------ 586 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDL------ 586 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcch------
Confidence 34457788888888888877775433322 24677788877444678899999999999888765543
Q ss_pred cCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 149 RDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 149 ~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+.-.+++|.. .++-||--.++++.-.|.+.-.. -++..|-.|...+ ..-+|..|.-++..|+..+.
T Consensus 587 ---lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~---~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 587 ---LVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDT---NDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred ---hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCc---HHHHHHHHHHHHHHHHhhcC
Confidence 3344566654 57999999999999888774322 1344555556666 67788999999988886663
No 222
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.81 E-value=1.4 Score=35.34 Aligned_cols=74 Identities=11% Similarity=0.235 Sum_probs=61.7
Q ss_pred cHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 151 GFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 151 gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
.+..|.+=|.++++.++..|..++-.++.+ ++.+...+.+..++..|+.++... .+..++++++..+.......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~--~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR--VHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHh
Confidence 345666778889999999999999988876 667888888999999999999883 38899999999998876444
No 223
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.44 E-value=3.4 Score=40.71 Aligned_cols=182 Identities=14% Similarity=0.173 Sum_probs=103.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhhc----CcchHHHHHHcCCHHHHHhhhc--
Q psy355 4 ANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYVC----SIDYANDFLKMGGLPVLQPLLE-- 75 (285)
Q Consensus 4 e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~--~~~~~~al~~L~~lv~----~~dna~~~~~~Gg~~~Lv~lL~-- 75 (285)
|.-+.+-.++..+.....+.|+.+.+.+..+... .-.+..|+-.+..++. +.+....++...-++.+...|.
T Consensus 375 ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~ 454 (574)
T smart00638 375 EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQA 454 (574)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 3344455555555444567777777777766532 2334445555554442 2221112222234455555443
Q ss_pred --CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc
Q psy355 76 --GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE--HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG 151 (285)
Q Consensus 76 --s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~--~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g 151 (285)
..+...+..++++|||+.. |. .++.|...+. ...+..+|..|+|||..++..+|...+.+
T Consensus 455 ~~~~~~~~~~~~LkaLGN~g~--~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~----- 518 (574)
T smart00638 455 VSKGDEEEIQLYLKALGNAGH--PS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV----- 518 (574)
T ss_pred HhcCCchheeeHHHhhhccCC--hh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH-----
Confidence 3566677889999998874 33 2344444444 23457899999999999987666654433
Q ss_pred HHHHHHhhcc--CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHH
Q psy355 152 FSVLLRCIQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLL 216 (285)
Q Consensus 152 i~~L~~~L~~--~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al 216 (285)
++.++.+ .+..+|..|..++- ..+|+. ..+..++..+..+ .+.++.-.+.
T Consensus 519 ---l~~i~~n~~e~~EvRiaA~~~lm---~t~P~~-------~~l~~ia~~l~~E--~~~QV~sfv~ 570 (574)
T smart00638 519 ---LLPIYLNRAEPPEVRMAAVLVLM---ETKPSV-------ALLQRIAELLNKE--PNLQVASFVY 570 (574)
T ss_pred ---HHHHHcCCCCChHHHHHHHHHHH---hcCCCH-------HHHHHHHHHHhhc--CcHHHHHHhH
Confidence 3566554 36888888876654 334533 3556666766654 2444444433
No 224
>KOG1967|consensus
Probab=91.38 E-value=0.93 Score=46.27 Aligned_cols=204 Identities=14% Similarity=0.166 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----------hhcC-cchHHHHHHcCCHHHHHhh
Q psy355 6 RGFLLDALNSMM-VNVGAELEKIIKTLKENQDQKDICIGALDNLSD----------YVCS-IDYANDFLKMGGLPVLQPL 73 (285)
Q Consensus 6 ~~~L~~al~~~~-~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~----------lv~~-~dna~~~~~~Gg~~~Lv~l 73 (285)
.-|+.+|+=.=- +.-.+.-++.++.|++++..+ .-..++.-+.. .++. +=+.+.|. ...+|.|+..
T Consensus 798 l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~-~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~ 875 (1030)
T KOG1967|consen 798 LAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGS-PAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSK 875 (1030)
T ss_pred HHHHHHHHHHcCCcccchHHHHHHHhcCCccccc-hHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHH
Confidence 457777763221 444666677888888876321 11111211111 0110 11122222 2357888887
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh--cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc
Q psy355 74 LEGSDPELRWRAAETVADIVQNNPFSQNFIIQ--TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG 151 (285)
Q Consensus 74 L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~--~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g 151 (285)
..+..-.++..-..+|+++..|-|. | .+.. ...+|.|++-|+- +|..+|..++..|.-++.-++.-+..-+ .-.
T Consensus 876 ~~t~~~~~K~~yl~~LshVl~~vP~-~-vllp~~~~LlPLLLq~Ls~-~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tl 951 (1030)
T KOG1967|consen 876 FETAPGSQKHNYLEALSHVLTNVPK-Q-VLLPQFPMLLPLLLQALSM-PDVIVRVSTLRTIPMLLTESETLQTEHL-STL 951 (1030)
T ss_pred hccCCccchhHHHHHHHHHHhcCCH-H-hhccchhhHHHHHHHhcCC-CccchhhhHhhhhhHHHHhccccchHHH-hHH
Confidence 7777778999999999999999887 3 2332 2578888898985 6789999999999988776555433222 224
Q ss_pred HHHHHHhhccCc---HHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHH
Q psy355 152 FSVLLRCIQSKK---EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSA 218 (285)
Q Consensus 152 i~~L~~~L~~~~---~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~a 218 (285)
+|.+..+=++++ ..+|.-|.-++..|++--|...-.-....++..|...|..+ .--+|+.|.++
T Consensus 952 vp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk---KRlVR~eAv~t 1018 (1030)
T KOG1967|consen 952 VPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK---KRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH---HHHHHHHHHHH
Confidence 566666544443 68899999999999885554433334445677788888766 55567666654
No 225
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=91.36 E-value=3.5 Score=34.50 Aligned_cols=114 Identities=13% Similarity=0.175 Sum_probs=80.0
Q ss_pred CHHHHHh-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC-------------------cHHHHHHhhccCCCHHHH
Q psy355 66 GLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD-------------------FLNLLLTSIEHDSNTTVQ 125 (285)
Q Consensus 66 g~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g-------------------~l~~L~~LL~~~~~~~v~ 125 (285)
.-+.|+. ++..+++.+|..|+.+++.+-.+....=...-+.+ .-..|+..|.++.+..+.
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 4456666 56789999999999999999987533222222111 234567777777778888
Q ss_pred HHHHHHHHHHhhCChHhHHHHHhcCcHHHHH----HhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355 126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLL----RCIQSKKEKLVIKSCFLIACLCTDNN 182 (285)
Q Consensus 126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~----~~L~~~~~~v~~ka~~~l~~L~~~~~ 182 (285)
...+-+++.++.+.|-..- ..|-++.++ ..+.+.|..++..+..++..+.+..+
T Consensus 120 ~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 8999999999998876532 345454444 44556789999999888888876543
No 226
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=91.32 E-value=0.28 Score=44.37 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=84.5
Q ss_pred hHHHHHHcCCHHHHHhhhc---CCCHHHHHHHHHHHHHHhhCCHHHH------------------------------HHH
Q psy355 57 YANDFLKMGGLPVLQPLLE---GSDPELRWRAAETVADIVQNNPFSQ------------------------------NFI 103 (285)
Q Consensus 57 na~~~~~~Gg~~~Lv~lL~---s~~~~vr~~A~~~lg~~a~nn~~~q------------------------------~~v 103 (285)
....+.-.|-+.+-++.|. -.+.+++..--++=..+.++..... +.+
T Consensus 271 ~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l 350 (432)
T COG5231 271 YIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDML 350 (432)
T ss_pred hhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHH
Confidence 3334444555555555443 2566777666666666665533211 111
Q ss_pred Hh--cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355 104 IQ--TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 179 (285)
Q Consensus 104 ~~--~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~ 179 (285)
.+ ...+..|.++++...+-..-.-||.-|..++|..|.....+.+.||-+.++.++.+++++++-+|..++..+.+
T Consensus 351 ~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 351 IKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 11 13677888888863332355568999999999999998888889999999999999999999999988876543
No 227
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.25 E-value=13 Score=36.78 Aligned_cols=139 Identities=10% Similarity=0.095 Sum_probs=87.3
Q ss_pred CHHHHHhhhcCCC--HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH
Q psy355 66 GLPVLQPLLEGSD--PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL 143 (285)
Q Consensus 66 g~~~Lv~lL~s~~--~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~ 143 (285)
.+..++.+=+.+. ..|...-+..+....++.|+--+.| .|.+..+++-+.+ +++.||..++.-|+-+... ..-+
T Consensus 50 ~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V--~~~~~h~lRg~es-kdk~VR~r~lqila~~~d~-v~eI 125 (885)
T COG5218 50 VVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELV--AGTFYHLLRGTES-KDKKVRKRSLQILALLSDV-VREI 125 (885)
T ss_pred HHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHH--HHHHHHHHhcccC-cchhHHHHHHHHHHHHHHh-cchH
Confidence 3455555544332 2344445555666777888764444 5678888888875 7899999999988877543 3334
Q ss_pred HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC--CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHH
Q psy355 144 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD--NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLS 217 (285)
Q Consensus 144 ~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~--~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~ 217 (285)
...+-.|.+..|..-+-...+.||..|.++++.+-.. +++. ..+..|..++..+ .+.++|..|+.
T Consensus 126 De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-------~~~n~l~~~vqnD--PS~EVRr~all 192 (885)
T COG5218 126 DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-------RIVNLLKDIVQND--PSDEVRRLALL 192 (885)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-------HHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 4555455566666666667899999999999987422 3322 2334555666543 14556655443
No 228
>KOG2032|consensus
Probab=91.22 E-value=3.5 Score=39.44 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=72.2
Q ss_pred HHHHcCCHHHHHhhh----cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CcHHHHHHhhccCCCHHHHHHHHHHHH
Q psy355 60 DFLKMGGLPVLQPLL----EGSDPELRWRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVS 133 (285)
Q Consensus 60 ~~~~~Gg~~~Lv~lL----~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~--g~l~~L~~LL~~~~~~~v~~~a~~ALs 133 (285)
.+-+.|.+.-++..| .+|+..+|..|++.|||.+.+-|. .+... -.+..++.-|.++.+..|.-.++.+|.
T Consensus 249 ~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~---kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt 325 (533)
T KOG2032|consen 249 ELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPD---KVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLT 325 (533)
T ss_pred cccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcH---HHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 344677776555433 258889999999999999998553 23333 245555555554556677777777766
Q ss_pred HHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355 134 CLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 179 (285)
Q Consensus 134 ~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~ 179 (285)
.+.-.-..-.-.++=.+.---+..+..+.++++|..|-+++..|.-
T Consensus 326 ~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 326 MVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 6543211100011111222345566778899999999998888763
No 229
>KOG0413|consensus
Probab=91.09 E-value=1.7 Score=44.86 Aligned_cols=128 Identities=10% Similarity=0.181 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh
Q psy355 79 PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC 158 (285)
Q Consensus 79 ~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~ 158 (285)
+.||..+.-.+|++|=-++.... ..+|.|++-|.......+|...+-|++.+|-++..-.+. -+|.+...
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~-----YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDR-----YIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHH-----hhHHHHHH
Confidence 46899999999998865554332 379999999987777899999999999999877654443 46888999
Q ss_pred hccCcHHHHHHHHHHHHHHhcCCchHHHHHHHC-C--cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 159 IQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM-G--MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 159 L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~-g--~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
|.+++.-+|+.+.-+|++|.+.+ ++.. | ++.-+..++.. +++++.-+-..+..+++..
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~D~----~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALLDA----NEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHccc----CHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999997642 2222 2 23445555553 6788888777777777554
No 230
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.85 E-value=2.1 Score=33.75 Aligned_cols=92 Identities=11% Similarity=0.212 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCC
Q psy355 127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIED 205 (285)
Q Consensus 127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~ 205 (285)
...-.|+.+++..+.... .++..|.+=|+++++.++..|..++-.++.+ ++.+...+.+.+++..|..++....
T Consensus 19 ~~~l~icD~i~~~~~~~k-----~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~ 93 (133)
T smart00288 19 ELILEICDLINSTPDGPK-----DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKY 93 (133)
T ss_pred HHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCC
Confidence 444556666666543322 2345677778899999999999999999887 6778888889999999999998761
Q ss_pred CCCcc-HHHHHHHHHHHHHhc
Q psy355 206 ALDTE-MNEHLLSALASLIKD 225 (285)
Q Consensus 206 ~~d~~-~~e~al~aL~~l~~~ 225 (285)
+.+ ++++++..+..-...
T Consensus 94 --~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 94 --PLPLVKKRILELIQEWADA 112 (133)
T ss_pred --CcHHHHHHHHHHHHHHHHH
Confidence 333 899999988776543
No 231
>KOG1020|consensus
Probab=90.77 E-value=12 Score=40.58 Aligned_cols=170 Identities=12% Similarity=0.124 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH-HHHHHhhc
Q psy355 82 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF-SVLLRCIQ 160 (285)
Q Consensus 82 r~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi-~~L~~~L~ 160 (285)
...|.++.-.++++.+..|.. -+.+..++..|.. +..++|.+|+-+||.|+.-.|.. ....-+ ..+.+=+-
T Consensus 794 ~~~a~li~~~la~~r~f~~sf---D~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp~v----L~~~dvq~~Vh~R~~ 865 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSF---DPYLKLILSVLGE-NAIALRTKALKCLSMIVEADPSV----LSRPDVQEAVHGRLN 865 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhh---HHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcChHh----hcCHHHHHHHHHhhc
Confidence 455666666677776664432 4678888888885 67899999999999998754431 111111 12223355
Q ss_pred cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccH
Q psy355 161 SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNL 240 (285)
Q Consensus 161 ~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l 240 (285)
+....||..|.-+++-.+...|+...... ..+..-+..+ ...+|.+++..+.-+....|... .+
T Consensus 866 DssasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDt---gvsVRKRvIKIlrdic~e~pdf~--------~i 929 (1692)
T KOG1020|consen 866 DSSASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDT---GVSVRKRVIKILRDICEETPDFS--------KI 929 (1692)
T ss_pred cchhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCC---chhHHHHHHHHHHHHHHhCCChh--------hH
Confidence 66789999999999988777765554333 3344444445 78899999999999988887432 12
Q ss_pred HHHHHHHHHHccChHhhHHHHHHHHHHH-HHhcCCCCc
Q psy355 241 KFKLNFIKEKHAGNEVYHKELEHVNSVL-TEVFEEDSL 277 (285)
Q Consensus 241 ~~~l~~~~~~l~~~~e~~~~~~~~~~il-~~~f~~~~~ 277 (285)
.+.+-+.++.... |-..+.+.+..++ +.||+...+
T Consensus 930 ~~~cakmlrRv~D--EEg~I~kLv~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 930 VDMCAKMLRRVND--EEGNIKKLVRETFLKLWFTPVPE 965 (1692)
T ss_pred HHHHHHHHHHhcc--chhHHHHHHHHHHHHHhccCCCc
Confidence 2333334444432 2222556555544 466766554
No 232
>KOG0915|consensus
Probab=90.71 E-value=4.3 Score=43.87 Aligned_cols=154 Identities=15% Similarity=0.179 Sum_probs=98.2
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
-+|.|.++=-.|++.||..=..+.+.+.+.....-+...+ .++.-|+.-+.+ ..=-||..+|.||+.+.+|.|.- .
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~--~ 1074 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTS-KEWRVREASCLALADLLQGRPFD--Q 1074 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChH--H
Confidence 3677888777899999999999999999875554443332 356666665654 44579999999999999997653 3
Q ss_pred HHhc--CcHHHHHHhhccCcHHHHH---HHHHHHHHHhcC------CchHHHHHHHCCcHHHHHH--hcccCCCCCccHH
Q psy355 146 FIKR--DGFSVLLRCIQSKKEKLVI---KSCFLIACLCTD------NNQVKQVLLSMGMVEQMCV--LIDIEDALDTEMN 212 (285)
Q Consensus 146 f~~~--~gi~~L~~~L~~~~~~v~~---ka~~~l~~L~~~------~~~~~~~l~~~g~v~~L~~--lL~~~~~~d~~~~ 212 (285)
|.+. ..+..+.+.+.+-...||. +++.+++.+|-. +...++.+ ..++|.|.. .+ +. -+.+|
T Consensus 1075 ~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l--~~iLPfLl~~gim-s~---v~evr 1148 (1702)
T KOG0915|consen 1075 VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL--DIILPFLLDEGIM-SK---VNEVR 1148 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH--HHHHHHHhccCcc-cc---hHHHH
Confidence 4431 2334445555443445554 566677776632 11112221 123343331 12 33 56889
Q ss_pred HHHHHHHHHHHhcChHH
Q psy355 213 EHLLSALASLIKDSTEA 229 (285)
Q Consensus 213 e~al~aL~~l~~~~~~~ 229 (285)
..++.++.-|++.++..
T Consensus 1149 ~~si~tl~dl~Kssg~~ 1165 (1702)
T KOG0915|consen 1149 RFSIGTLMDLAKSSGKE 1165 (1702)
T ss_pred HHHHHHHHHHHHhchhh
Confidence 99999999999888753
No 233
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.67 E-value=2.4 Score=33.79 Aligned_cols=94 Identities=12% Similarity=0.164 Sum_probs=69.3
Q ss_pred HHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC--
Q psy355 128 SLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE-- 204 (285)
Q Consensus 128 a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~-- 204 (285)
....|+-+++..+... ..++..|.+-|+++++.++..|..++-.++.+ ++.+...+.+.+++..|+.++...
T Consensus 21 ~ileicD~In~~~~~~-----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~ 95 (139)
T cd03567 21 AIQAFCEQINKEPEGP-----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYL 95 (139)
T ss_pred HHHHHHHHHHcCCccH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccC
Confidence 4444555555443321 13456777888899999999999999988876 678888999999999999999641
Q ss_pred -CCCCccHHHHHHHHHHHHHhcC
Q psy355 205 -DALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 205 -~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+..+..++++++..+..-....
T Consensus 96 ~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 96 GSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Confidence 1237889999999988776444
No 234
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=90.62 E-value=11 Score=33.08 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=67.1
Q ss_pred HHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC-CCHHHHHHHHHHHHHHhhCCh
Q psy355 62 LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-SNTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 62 ~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~-~~~~v~~~a~~ALs~l~r~~~ 140 (285)
..--++|+++++++.++.. --..+|-.++..-.--=+.+-.|-+++|-+++.+. -+.=+|..|+.||..++..++
T Consensus 70 re~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred hhhhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 3345799999999765542 12233332221110011112234556666666642 345789999999999999888
Q ss_pred HhHHHHHhcCcHHHHHHh-hccCcHHHHHHHHHHHHHHhcCCc----hHHHHHHHCCcHHH
Q psy355 141 ECLKEFIKRDGFSVLLRC-IQSKKEKLVIKSCFLIACLCTDNN----QVKQVLLSMGMVEQ 196 (285)
Q Consensus 141 ~~~~~f~~~~gi~~L~~~-L~~~~~~v~~ka~~~l~~L~~~~~----~~~~~l~~~g~v~~ 196 (285)
.....+++ -+..++.. +...+.-+ -.+++++++.-.| ...+.+.+.|.|+.
T Consensus 146 ~~Re~vi~--~f~~ll~~~l~~~~~~~---~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 146 ISREEVIQ--YFRELLNYFLERNPSFL---WGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred CCHHHHHH--HHHHHHHHHhccCchHH---HHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 87776652 23333333 43333222 2344555555443 23344445677654
No 235
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=90.60 E-value=2.1 Score=36.26 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC---cchHHHHHHcCCHHHHHhhhcC---CC---------------H
Q psy355 21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCS---IDYANDFLKMGGLPVLQPLLEG---SD---------------P 79 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~---~dna~~~~~~Gg~~~Lv~lL~s---~~---------------~ 79 (285)
...|++.+.+..+.+..+. .+...... ..+..-|...|++..++.+|.. .. .
T Consensus 3 ~~~l~~Li~f~~~~~~~~~-------~~~~~~~~~~~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~ 75 (207)
T PF01365_consen 3 LKILRDLIKFCMGSEEEDQ-------HLLKQRNGQPNRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFK 75 (207)
T ss_dssp HHHHHHHHHHHTTTS--SS--------SHHCCCCHHHHHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHH
T ss_pred HHHHHHHHhHhCCCCcccc-------hHHHHhcCCcchhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHH
Confidence 3556667777766664222 11111111 1234457788888888887763 22 4
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhh
Q psy355 80 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCI 159 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L 159 (285)
.+...+.+.|...+.+|+.+|..+.+. ++.++..+... ....-..+..++..+.++|+.....+.+.. +..+++++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-QIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-CH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-hccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 678899999999999999999998774 55444444321 122224567888999999999888876555 88888888
Q ss_pred ccCcHHHHHHHHHHHHHHhcC
Q psy355 160 QSKKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 160 ~~~~~~v~~ka~~~l~~L~~~ 180 (285)
.... -+.+-.-+++.+|..
T Consensus 152 ~~~g--r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 152 RKHG--RQPRYLDFLSSLCVC 170 (207)
T ss_dssp ---------------------
T ss_pred HHcC--CChHHHHHHhhhccc
Confidence 7632 223344555555543
No 236
>KOG2062|consensus
Probab=90.36 E-value=1.4 Score=43.99 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=67.8
Q ss_pred HHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 67 LPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 67 ~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
+..|+.. .+.++.+||..|.-+||=++-..|. .+|..+.+|+.+.++.||.-|+.||+=.|.|.-...
T Consensus 556 ir~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-- 624 (929)
T KOG2062|consen 556 IRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-- 624 (929)
T ss_pred HHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--
Confidence 3334433 3457889999999999999887776 478889999987899999999999998888754321
Q ss_pred HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355 146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC 178 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~ 178 (285)
.+.+|-.+.+++..=||+-|+-+++-+.
T Consensus 625 -----Ai~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 625 -----AINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred -----HHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 1233344444555667777766666544
No 237
>KOG3665|consensus
Probab=90.15 E-value=2.7 Score=42.57 Aligned_cols=150 Identities=14% Similarity=0.163 Sum_probs=96.1
Q ss_pred cCcchHHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhCCH--HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHH
Q psy355 53 CSIDYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNP--FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSL 129 (285)
Q Consensus 53 ~~~dna~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~--~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~ 129 (285)
+..++...|.+.||...+..++++ .+.+++..+..++++++.--+ .....+..... ..+-.++....+...-..|+
T Consensus 501 ~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~ersY~~~ 579 (699)
T KOG3665|consen 501 ENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSIERSYNAA 579 (699)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchhhHHHHHH
Confidence 446788899999999999999986 788999999999999986321 12222211111 12222444322234445555
Q ss_pred HHHHHHhhCCh-----------------------HhHHHHHhcCcHHH-HHHhhccC-cHHHHHHHHHHHHHHhcCCchH
Q psy355 130 YAVSCLVRDNE-----------------------ECLKEFIKRDGFSV-LLRCIQSK-KEKLVIKSCFLIACLCTDNNQV 184 (285)
Q Consensus 130 ~ALs~l~r~~~-----------------------~~~~~f~~~~gi~~-L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~ 184 (285)
..|+.++.+.+ .....++-..-+.+ +.+++..+ .+-.+-.|.|++.+++..+++.
T Consensus 580 siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~ 659 (699)
T KOG3665|consen 580 SILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEY 659 (699)
T ss_pred HHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhh
Confidence 55555554321 11111221222333 55566554 5788899999999999999998
Q ss_pred HHHHHHCCcHHHHHHhccc
Q psy355 185 KQVLLSMGMVEQMCVLIDI 203 (285)
Q Consensus 185 ~~~l~~~g~v~~L~~lL~~ 203 (285)
.+.+.+.|+++.+.+.-..
T Consensus 660 ~~~~~~~~~~~~~~~~~~~ 678 (699)
T KOG3665|consen 660 CKLVRESNGFELIENIRVL 678 (699)
T ss_pred hhhhHhccchhhhhhcchh
Confidence 8888899999887765443
No 238
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=90.14 E-value=3.9 Score=31.43 Aligned_cols=88 Identities=23% Similarity=0.355 Sum_probs=55.0
Q ss_pred HHHHHhhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC------
Q psy355 67 LPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN------ 139 (285)
Q Consensus 67 ~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~------ 139 (285)
+|.+...|. +..++.|..|..+++.++...+-..+.+ + ..+..+++-... ....+.++-+|..++.+.
T Consensus 8 LP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l-~-~l~~~i~~~~~~---~~~~~~~l~~L~~l~q~q~~~~~l 82 (121)
T PF12397_consen 8 LPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVL-N-ALMESILKNWTQ---ETVQRQALICLIVLCQSQENVDSL 82 (121)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHH-H-HHHHHHHhcccc---chhHHHHHHHHHHHHHcccccccC
Confidence 677888888 7899999999999999998766433322 1 133333333332 222578999999998764
Q ss_pred -hHhHHHHHhcCcHHHHHHhh
Q psy355 140 -EECLKEFIKRDGFSVLLRCI 159 (285)
Q Consensus 140 -~~~~~~f~~~~gi~~L~~~L 159 (285)
....+.+....++...+.-+
T Consensus 83 p~~~~~~l~~~~~l~~~L~~l 103 (121)
T PF12397_consen 83 PRKVFKALLKLPDLIELLSEL 103 (121)
T ss_pred CHHHHHHHHcCccHHHHHHHH
Confidence 12344555555544444444
No 239
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=90.02 E-value=5 Score=31.84 Aligned_cols=95 Identities=15% Similarity=0.241 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC
Q psy355 126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE 204 (285)
Q Consensus 126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~ 204 (285)
-.+...|+.+++..+..... .+..|.+-|.+++++++..|..++-.++.+ ++.+...+.+..++..|..++.+.
T Consensus 23 w~~~l~icD~i~~~~~~~ke-----a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~ 97 (140)
T PF00790_consen 23 WSLILEICDLINSSPDGAKE-----AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK 97 (140)
T ss_dssp HHHHHHHHHHHHTSTTHHHH-----HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC
Confidence 34555677777776444322 355677888899999999999999998877 477888888889999999998875
Q ss_pred CCCCcc--HHHHHHHHHHHHHhcC
Q psy355 205 DALDTE--MNEHLLSALASLIKDS 226 (285)
Q Consensus 205 ~~~d~~--~~e~al~aL~~l~~~~ 226 (285)
. ..+. ++++++..|.......
T Consensus 98 ~-~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 98 K-TDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp T-THHHSHHHHHHHHHHHHHHHHT
T ss_pred C-CCchhHHHHHHHHHHHHHHHHH
Confidence 1 1222 8999999888776554
No 240
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=90.01 E-value=10 Score=35.14 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhh-cCCCH-HHHHHHHHHHHHHhhC
Q psy355 18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL-EGSDP-ELRWRAAETVADIVQN 95 (285)
Q Consensus 18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL-~s~~~-~vr~~A~~~lg~~a~n 95 (285)
.||++.+=+-+ . +..+...+..++-.|..-+-+.+....|...|....+++.+ ..++. ..--.++-++..+.+.
T Consensus 20 ~Dev~ylld~l---~-~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d 95 (361)
T PF07814_consen 20 ADEVEYLLDGL---E-SSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD 95 (361)
T ss_pred HHHHHHHHhhc---c-cCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC
Confidence 45544444433 3 34445678888999999998989999999999999999988 44444 3444445555555555
Q ss_pred CHHHHHHHHhcCcHHHHHHhhc
Q psy355 96 NPFSQNFIIQTDFLNLLLTSIE 117 (285)
Q Consensus 96 n~~~q~~v~~~g~l~~L~~LL~ 117 (285)
.+ ....+.+.+.+..+++|+.
T Consensus 96 ~~-~~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 96 GL-NMHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred Cc-chhhhhchhHHHHHHHHhc
Confidence 43 3444556677777788888
No 241
>KOG4653|consensus
Probab=89.84 E-value=19 Score=36.94 Aligned_cols=113 Identities=15% Similarity=0.224 Sum_probs=71.9
Q ss_pred CCHHHHHh-hhcC---CCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC
Q psy355 65 GGLPVLQP-LLEG---SDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN 139 (285)
Q Consensus 65 Gg~~~Lv~-lL~s---~~~~vr~~A~~~lg~~a~n-n~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~ 139 (285)
..+|-+.. +.++ +.++-|...-.+|+++++- ++-++.+.. -.+..+++-++ +++...|..++.+++.+|+-.
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvr-epd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVR-EPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcC-CchHHHHHhHHHHHHHHHHHH
Confidence 34555655 4443 2245566666888888773 444444332 34555666666 466778999999999998755
Q ss_pred hHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCC
Q psy355 140 EECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDN 181 (285)
Q Consensus 140 ~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~ 181 (285)
......|. ...+..++.+.+. +..-+|+.|+.++..+..+.
T Consensus 879 a~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 879 AFQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred hhhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence 44333333 2234455555555 46899999999999998874
No 242
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.68 E-value=11 Score=32.68 Aligned_cols=140 Identities=20% Similarity=0.217 Sum_probs=89.1
Q ss_pred HHHHHh-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 67 LPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 67 ~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
++.|+. +-+..++.++...+..|+.++.++..+... ++..|..+... +....+.-+...+..+...++..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchHH--
Confidence 344544 566789999999999999999876122222 34455566664 334445566666677766655443
Q ss_pred HHhcCcHHHHHHh--------hcc--CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhc-ccCCCCCccHHHH
Q psy355 146 FIKRDGFSVLLRC--------IQS--KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLI-DIEDALDTEMNEH 214 (285)
Q Consensus 146 f~~~~gi~~L~~~--------L~~--~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL-~~~~~~d~~~~e~ 214 (285)
+.+..++.. ..+ .........+..+..+|...|+. -..+++.+..+| ... +...+..
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~---~~~~~al 141 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSC---DEVAQAL 141 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccc---cHHHHHH
Confidence 222322222 111 23566666678899999988871 123667888888 565 7788889
Q ss_pred HHHHHHHHHhcC
Q psy355 215 LLSALASLIKDS 226 (285)
Q Consensus 215 al~aL~~l~~~~ 226 (285)
++.+|..+....
T Consensus 142 ale~l~~Lc~~~ 153 (234)
T PF12530_consen 142 ALEALAPLCEAE 153 (234)
T ss_pred HHHHHHHHHHHh
Confidence 999998888433
No 243
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.57 E-value=3 Score=41.72 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=78.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh------cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC-
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ------TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN- 139 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~------~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~- 139 (285)
+..++.||.|++-.+|..-..+.||++..-..-.+ .++ ...+..|..-|. +..+-+|.||+..+++|+.-+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~q-m~e~~~~~~~~Lv~ll~ERl~-D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQ-MVEHYKQKLNDLVGLLVERLS-DTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchh-hHhhHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHhCcc
Confidence 56778899999999999999999998853111001 111 124444555555 467899999999999997643
Q ss_pred --hHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355 140 --EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN 182 (285)
Q Consensus 140 --~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~ 182 (285)
+...+.| +...++.|++.+.-||++|.-+++.|....|
T Consensus 379 k~~~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 379 KTVGRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cccchHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 2223333 4567889999999999999999999987765
No 244
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=89.50 E-value=3.9 Score=30.55 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHH-hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh
Q psy355 80 ELRWRAAETVADIVQNNPFSQNFII-QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC 158 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~nn~~~q~~v~-~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~ 158 (285)
+||.+|+.-|-+=-.++--+...+. ..+.+..|+.-+... +......++.-|+.++++ |.+...+.+.|+...|.++
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~kl 79 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKL 79 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHH
Confidence 5777777766553333333333333 456788888888874 456888999999998885 6677788889999997776
Q ss_pred hccCcHHHHHHHHHHH
Q psy355 159 IQSKKEKLVIKSCFLI 174 (285)
Q Consensus 159 L~~~~~~v~~ka~~~l 174 (285)
-...++..+...--++
T Consensus 80 r~~~~~~~~~~id~il 95 (98)
T PF14726_consen 80 RPNVEPNLQAEIDEIL 95 (98)
T ss_pred HhcCCHHHHHHHHHHH
Confidence 6555677766554443
No 245
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.44 E-value=4.9 Score=32.91 Aligned_cols=115 Identities=11% Similarity=0.195 Sum_probs=80.9
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc--HHHHHHhhccC-cHHHHHHHHHHHHHHhc---CC
Q psy355 108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG--FSVLLRCIQSK-KEKLVIKSCFLIACLCT---DN 181 (285)
Q Consensus 108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g--i~~L~~~L~~~-~~~v~~ka~~~l~~L~~---~~ 181 (285)
.+..+.++|.+ ++..-|-.++..+...+..++. +.|.+.++ +..++..|+.+ +..++.-|+.++..+.. +.
T Consensus 26 l~~ri~~LL~s-~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQS-KSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCC-CChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45667888886 5678888888888888887643 45655543 46778888876 57788888888888764 46
Q ss_pred chHHHHHHHC---CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355 182 NQVKQVLLSM---GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230 (285)
Q Consensus 182 ~~~~~~l~~~---g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~ 230 (285)
|+..+.+.-- ++++.++++++ +....+.++.+|..++..+|...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~-----~~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQ-----DSSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHCCccc
Confidence 7766555433 34445555544 24678899999999999888533
No 246
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=88.71 E-value=2.8 Score=32.68 Aligned_cols=76 Identities=9% Similarity=0.132 Sum_probs=51.2
Q ss_pred cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH-hhcccCcccHHHHHHHHHH------HccChHhhHHHHHHHH
Q psy355 193 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ-SLCRLEPLNLKFKLNFIKE------KHAGNEVYHKELEHVN 265 (285)
Q Consensus 193 ~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~-~~~~~~~~~l~~~l~~~~~------~l~~~~e~~~~~~~~~ 265 (285)
+++.|.+=|+.. ++-++-++|..|.+++..++..+ ..++. .. ..++...+ .+.+...++.+.+.|.
T Consensus 39 i~d~L~kRL~~~---~~hVK~K~Lrilk~l~~~G~~~f~~~~~~-~~---~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~ 111 (122)
T cd03572 39 LLEYLLKRLKRS---SPHVKLKVLKIIKHLCEKGNSDFKRELQR-NS---AQIRECANYKGPPDPLKGDSLNEKVREEAQ 111 (122)
T ss_pred HHHHHHHHhcCC---CCcchHHHHHHHHHHHhhCCHHHHHHHHH-hH---HHHHHHHHcCCCCCcccCcchhHHHHHHHH
Confidence 445666667776 78899999999999998887433 22221 11 12222111 2233557899999999
Q ss_pred HHHHHhcCCC
Q psy355 266 SVLTEVFEED 275 (285)
Q Consensus 266 ~il~~~f~~~ 275 (285)
.++...|+.+
T Consensus 112 El~~~if~~~ 121 (122)
T cd03572 112 ELIKAIFSYS 121 (122)
T ss_pred HHHHHHhccC
Confidence 9999999865
No 247
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=88.52 E-value=11 Score=30.02 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=55.1
Q ss_pred CHHHHHhhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHH-HHHhhccC--CCHHHHHHHHHHHHHHhh
Q psy355 66 GLPVLQPLLE-GSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNL-LLTSIEHD--SNTTVQVKSLYAVSCLVR 137 (285)
Q Consensus 66 g~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~-L~~LL~~~--~~~~v~~~a~~ALs~l~r 137 (285)
++..|.+=|+ +.++.++..|+.+|..++.|. +.++..+...+.+.. |++++... .+..|+.+.+..|-.-..
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 3555555455 578999999999999999987 467778888899997 99999732 345888888877766554
No 248
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=88.37 E-value=16 Score=31.73 Aligned_cols=185 Identities=17% Similarity=0.217 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhhcC-cchHHHHHHcCCHH-HHHh-------hhc----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc
Q psy355 40 ICIGALDNLSDYVCS-IDYANDFLKMGGLP-VLQP-------LLE----GSDPELRWRAAETVADIVQNNPFSQNFIIQT 106 (285)
Q Consensus 40 ~~~~al~~L~~lv~~-~dna~~~~~~Gg~~-~Lv~-------lL~----s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~ 106 (285)
.++.||++|..--++ .|.|-.+-..-|++ .|++ +|+ ++...-|.-.+-.|-.+....|+.+..++++
T Consensus 61 ~kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~A 140 (315)
T COG5209 61 PKEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDA 140 (315)
T ss_pred HHHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeec
Confidence 466688888877766 35565554444444 3332 122 1223334333333444455689989888887
Q ss_pred Cc---HHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHhHHHHH-hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC
Q psy355 107 DF---LNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEECLKEFI-KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 181 (285)
Q Consensus 107 g~---l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~~~~f~-~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~ 181 (285)
.. +-+++...++ .+-+-+|-.++..|+.++.+..+-.-.|+ ....+|.+++++..++.--|.-|+|.+..+.-.+
T Consensus 141 hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 141 HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 53 2333333332 34457899999999999998766555555 4678999999999999999999999998877654
Q ss_pred ch---HHHHHHH----CCcHHHHH-HhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 182 NQ---VKQVLLS----MGMVEQMC-VLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 182 ~~---~~~~l~~----~g~v~~L~-~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
.. .++.+-. ..++..++ ++.+.+ ...+..+++++-..+. +.|.
T Consensus 221 vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~---~~RLlKh~iRcYlRLs-d~p~ 271 (315)
T COG5209 221 VGLQYICQTFERFYAVNLVLNSMVSQLVSLG---STRLLKHAIRCYLRLS-DKPH 271 (315)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHheeec-CCHh
Confidence 31 1222211 12233333 233344 6778888888887764 3343
No 249
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.21 E-value=1.4 Score=38.33 Aligned_cols=80 Identities=19% Similarity=0.135 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHH-------Hhhhc-CCCHHHHHHHHHHHHHHhhCCHHHH-HHHHhcCcH
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVL-------QPLLE-GSDPELRWRAAETVADIVQNNPFSQ-NFIIQTDFL 109 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~L-------v~lL~-s~~~~vr~~A~~~lg~~a~nn~~~q-~~v~~~g~l 109 (285)
.-+--||+.|..++=.-.|..-+...|.+..+ +++|. .+++..|+.|..+|.+++++..... ....+.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 45667888888887665666666777766544 44444 4889999999999999999887755 555778999
Q ss_pred HHHHHhhcc
Q psy355 110 NLLLTSIEH 118 (285)
Q Consensus 110 ~~L~~LL~~ 118 (285)
..|+..+..
T Consensus 219 ~~Li~FiE~ 227 (257)
T PF12031_consen 219 SHLIAFIED 227 (257)
T ss_pred HHHHHHHHH
Confidence 999999985
No 250
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.86 E-value=15 Score=32.23 Aligned_cols=169 Identities=22% Similarity=0.251 Sum_probs=103.1
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC--cHHHHHHhhcc---CCCHHHHHHHHHHHHHHhhCChH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD--FLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRDNEE 141 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g--~l~~L~~LL~~---~~~~~v~~~a~~ALs~l~r~~~~ 141 (285)
...+...+.+=+++-+-++..++--++- +|..-..+...+ ....+..++.. ...+..+--++..++|+..+. .
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~-~ 142 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP-P 142 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC-C
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC-c
Confidence 4556666666556669999999976665 555555554443 23444444443 246788888999999988754 4
Q ss_pred hHHHHHhcCc--HHHHHHhhccC----cHHHHHHHHHHHHHHhcC----C--chHHHHHHHCCcHHHHHHhcccCCCCCc
Q psy355 142 CLKEFIKRDG--FSVLLRCIQSK----KEKLVIKSCFLIACLCTD----N--NQVKQVLLSMGMVEQMCVLIDIEDALDT 209 (285)
Q Consensus 142 ~~~~f~~~~g--i~~L~~~L~~~----~~~v~~ka~~~l~~L~~~----~--~~~~~~l~~~g~v~~L~~lL~~~~~~d~ 209 (285)
....+..... +--.+..+.+. +..+|..++.++.|++.. . .+... .++..+...+... ..|+
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~-----~ll~~i~~~~~~~-~~d~ 216 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS-----ELLSSIIEVLSRE-ESDE 216 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH-----HHHHHHHHHCHCC-HTSH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH-----HHHHHHHHHhccc-cCCH
Confidence 4555554333 33333333333 789999999999998642 1 11111 1334455533221 2388
Q ss_pred cHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHH
Q psy355 210 EMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLN 245 (285)
Q Consensus 210 ~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~ 245 (285)
+..-.++-||++++..++.....+.. +++.+.+.
T Consensus 217 Ea~~R~LvAlGtL~~~~~~~~~~~~~--l~~~~~~~ 250 (268)
T PF08324_consen 217 EALYRLLVALGTLLSSSDSAKQLAKS--LDVKSVLS 250 (268)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHCCC--CTHHHHHH
T ss_pred HHHHHHHHHHHHHhccChhHHHHHHH--cChHHHHH
Confidence 88999999999999777766666643 34555554
No 251
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=87.79 E-value=20 Score=33.51 Aligned_cols=143 Identities=12% Similarity=0.098 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCH-HHHHhhhc------CCCHHHHHHHHHHHH
Q psy355 18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGL-PVLQPLLE------GSDPELRWRAAETVA 90 (285)
Q Consensus 18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~-~~Lv~lL~------s~~~~vr~~A~~~lg 90 (285)
.||.|.+++-++ +++.+..+..|.+-+..+++.-. .... +.+ ..+-.+|+ +.+..-+..|+..+|
T Consensus 209 ddP~EYIrrd~e----~sd~~TrR~AA~dfl~~L~~~~~--~~v~--~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ 280 (370)
T PF08506_consen 209 DDPEEYIRRDLE----GSDSDTRRRAACDFLRSLCKKFE--KQVT--SILMQYIQQLLQQYASNPSNNWRSKDGALYLIG 280 (370)
T ss_dssp HSHHHHHHHHSC----SS---SHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred cCHHHHHHhhcc----ccccCCcHHHHHHHHHHHHHHHh--HHHH--HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence 455666665332 23334567777777777775422 1111 111 22233444 456688899999999
Q ss_pred HHhhCCHHH------------HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh
Q psy355 91 DIVQNNPFS------------QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC 158 (285)
Q Consensus 91 ~~a~nn~~~------------q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~ 158 (285)
.++.-.... =..+....++|-|- -.....+-+|..|++-++..-..-++. .+. +.+|.++++
T Consensus 281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~~--~l~--~~~~~l~~~ 354 (370)
T PF08506_consen 281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPKE--QLL--QIFPLLVNH 354 (370)
T ss_dssp HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-HH--HHH--HHHHHHHHH
T ss_pred HHHhhhccccCCcccccccccHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCHH--HHH--HHHHHHHHH
Confidence 998754321 12344444556554 222356789999999999875544432 233 579999999
Q ss_pred hccCcHHHHHHHHHHH
Q psy355 159 IQSKKEKLVIKSCFLI 174 (285)
Q Consensus 159 L~~~~~~v~~ka~~~l 174 (285)
|++++.-|+.-||.+|
T Consensus 355 L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 355 LQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred hCCCCcchhhhhhhhC
Confidence 9999999999998875
No 252
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=87.61 E-value=1.8 Score=36.79 Aligned_cols=123 Identities=14% Similarity=0.118 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCcHHHHHHhhccCC--C---------------HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhh
Q psy355 97 PFSQNFIIQTDFLNLLLTSIEHDS--N---------------TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCI 159 (285)
Q Consensus 97 ~~~q~~v~~~g~l~~L~~LL~~~~--~---------------~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L 159 (285)
...|..+.+.|++..++.+|...- . ..+-..+...|..++++++.++..+.+. ++.++..+
T Consensus 33 ~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~ 110 (207)
T PF01365_consen 33 RERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIF 110 (207)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----H
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHH
Confidence 456777888899999888887521 1 2566788889999999999998887753 33222222
Q ss_pred ccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 160 QSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 160 ~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
.......-.-+.-++..+..+++.....+.+.. |..++.+|... . -....+..|..|...+.
T Consensus 111 ~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~---g--r~~~~L~~L~~lc~~~g 172 (207)
T PF01365_consen 111 MQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKH---G--RQPRYLDFLSSLCVCNG 172 (207)
T ss_dssp HCCCH-TTHHHHHHHHHHHTT-----------------------------------------------
T ss_pred HHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHc---C--CChHHHHHHhhhcccCC
Confidence 221111113456677888899998888877655 89999999873 2 23345666766665443
No 253
>KOG0414|consensus
Probab=87.33 E-value=3.1 Score=43.73 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=79.0
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhC---CHHHHHHHHh---cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQN---NPFSQNFIIQ---TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n---n~~~q~~v~~---~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~ 140 (285)
+..|+.+|.+.+-.+|-.-..++||++-. ++. +....+ .-.+..|..-+. +.+.-+|.+++.....|++-+.
T Consensus 314 l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e-~~~~sk~~r~~~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s 391 (1251)
T KOG0414|consen 314 LTLLVDLLDSESYTLRNAVLEICANLVASELRDEE-LEEMSKSLRDELLELLRERLL-DVSAYVRSKVLQVFRRLFQQHS 391 (1251)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHHHHHHHHccC
Confidence 56777889999999999999999998742 222 111111 124444544444 4678999999999999988654
Q ss_pred HhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCch
Q psy355 141 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ 183 (285)
Q Consensus 141 ~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~ 183 (285)
.....+- ..+...++-|.+.+.-||++|..+++.+...+|.
T Consensus 392 ~p~~~~~--eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 392 IPLGSRT--EVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred CCccHHH--HHHHHHhcccccccHHHHHHHHHHHHHHHhcCCc
Confidence 3322221 2345666778888999999999999999988773
No 254
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=87.30 E-value=14 Score=33.09 Aligned_cols=70 Identities=14% Similarity=0.344 Sum_probs=47.1
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH-HHHHhcCcHHHHHH----hhc---c----CCCHHHHHHHHHHHHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ-NFIIQTDFLNLLLT----SIE---H----DSNTTVQVKSLYAVSC 134 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q-~~v~~~g~l~~L~~----LL~---~----~~~~~v~~~a~~ALs~ 134 (285)
+|+++.++...++.+|.+++.++..+..+-+... ..+.+.|..+.+-. +|. + +.+..+-..|.-|+-.
T Consensus 121 iP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~ 200 (282)
T PF10521_consen 121 IPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLS 200 (282)
T ss_pred HhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHH
Confidence 7899999999999999999999999998766433 23566675554433 222 0 1233455555555555
Q ss_pred Hh
Q psy355 135 LV 136 (285)
Q Consensus 135 l~ 136 (285)
++
T Consensus 201 L~ 202 (282)
T PF10521_consen 201 LL 202 (282)
T ss_pred HH
Confidence 53
No 255
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=86.99 E-value=9.1 Score=29.01 Aligned_cols=93 Identities=13% Similarity=0.200 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC
Q psy355 126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE 204 (285)
Q Consensus 126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~ 204 (285)
...+..|+-+++.++.... ..+..|..-|.+++++++-+|..++-+++.+ ++.+...+.+..++..++.+...+
T Consensus 18 ~~~i~~i~d~~~~~~~~~~-----~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~ 92 (115)
T cd00197 18 WPLIMEICDLINETNVGPK-----EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSK 92 (115)
T ss_pred HHHHHHHHHHHHCCCccHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccc
Confidence 3445556666655433322 2355667778888999999999999999876 567777788888887776641111
Q ss_pred ---CCCCccHHHHHHHHHHHHH
Q psy355 205 ---DALDTEMNEHLLSALASLI 223 (285)
Q Consensus 205 ---~~~d~~~~e~al~aL~~l~ 223 (285)
...+..+|++++..+...+
T Consensus 93 ~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 93 LLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred cccCCCChHHHHHHHHHHHHHh
Confidence 1236788999988776543
No 256
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.82 E-value=3 Score=30.72 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=56.0
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 153 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 153 ~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
...+..|.++..-+|..+...++.|+.... .....-.+++..+...|+.+ |+-+--.|..+|..++...|.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~---DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE---DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHHChH
Confidence 345666788888899999999999998765 11222245677888889988 999999999999999988875
No 257
>KOG3665|consensus
Probab=86.60 E-value=33 Score=34.94 Aligned_cols=95 Identities=25% Similarity=0.311 Sum_probs=66.9
Q ss_pred HHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCCc--hHHHHHHHCCcHHHHHHhcccCCCC
Q psy355 131 AVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDNN--QVKQVLLSMGMVEQMCVLIDIEDAL 207 (285)
Q Consensus 131 ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~--~~~~~l~~~g~v~~L~~lL~~~~~~ 207 (285)
+|.+++..++.....|++.||...+..++..- ...++.++...+.+++...+ +.......-.+ ..+..++... .
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w--~ 570 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKW--D 570 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhc--c
Confidence 56678888999999999999999999999964 68999999999999987542 12211111111 2333345544 1
Q ss_pred CccHHHHHHHHHHHHHhcChH
Q psy355 208 DTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 208 d~~~~e~al~aL~~l~~~~~~ 228 (285)
+.+.--.+...|..++.+++.
T Consensus 571 ~~ersY~~~siLa~ll~~~~~ 591 (699)
T KOG3665|consen 571 SIERSYNAASILALLLSDSEK 591 (699)
T ss_pred hhhHHHHHHHHHHHHHhCCCc
Confidence 336677788888888888765
No 258
>PLN03205 ATR interacting protein; Provisional
Probab=86.10 E-value=8 Score=36.34 Aligned_cols=163 Identities=10% Similarity=0.130 Sum_probs=104.5
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhh---CCHHHHHHHHhcCcHHHH---HHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQ---NNPFSQNFIIQTDFLNLL---LTSIEHDSNTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~---nn~~~q~~v~~~g~l~~L---~~LL~~~~~~~v~~~a~~ALs~l~r~~~ 140 (285)
+.+|+.|..-++..+..+++++|-.+.| ||..--++-.+.+++..+ .+.--..+...||..|++-.--|++...
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 4677777778999999999998887665 333322233344444432 2222223456788888877666665433
Q ss_pred H--hHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcCC--------------------c-----hHHHHHHHCC
Q psy355 141 E--CLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTDN--------------------N-----QVKQVLLSMG 192 (285)
Q Consensus 141 ~--~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~~--------------------~-----~~~~~l~~~g 192 (285)
+ ..+.|.....+..+.++|+.. -..||+.|..++.=|+.-. . ...+.+- .
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fS--s 482 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFG--K 482 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHH--H
Confidence 3 356677667788888889875 5889999988877654211 0 1111111 2
Q ss_pred cHHHHHHhcccC--CCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355 193 MVEQMCVLIDIE--DALDTEMNEHLLSALASLIKDSTEAQS 231 (285)
Q Consensus 193 ~v~~L~~lL~~~--~~~d~~~~e~al~aL~~l~~~~~~~~~ 231 (285)
+++.|...+..+ +..|.+++..+...|..++..+...++
T Consensus 483 IlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfE 523 (652)
T PLN03205 483 IFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYE 523 (652)
T ss_pred HHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCce
Confidence 446677777765 356788899999999999988865443
No 259
>KOG1243|consensus
Probab=85.82 E-value=13 Score=37.11 Aligned_cols=130 Identities=12% Similarity=0.149 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCC--HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHH
Q psy355 37 QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSD--PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT 114 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~--~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~ 114 (285)
+.+++..-+.-|.+.++. ...+++..-.+|.|+..+..++ ..+..+.. -+|.....-+ +..+++|.|++
T Consensus 267 s~~eK~~Ff~~L~~~l~~--~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~-k~~k~ld~~e------yq~~i~p~l~k 337 (690)
T KOG1243|consen 267 SVEEKQKFFSGLIDRLDN--FPEEIIASKVLPILLAALEFGDAASDFLTPLF-KLGKDLDEEE------YQVRIIPVLLK 337 (690)
T ss_pred cHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhccccchhhhhHHH-Hhhhhccccc------cccchhhhHHH
Confidence 356777777777665543 3457777777888887776554 34444433 3344443333 45678999999
Q ss_pred hhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355 115 SIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 179 (285)
Q Consensus 115 LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~ 179 (285)
|+.. .+..+|...+.-+=..+.+-+. ..+..-.+|.+...+.+++..+|..+.-.+..|+.
T Consensus 338 LF~~-~Dr~iR~~LL~~i~~~i~~Lt~---~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 338 LFKS-PDRQIRLLLLQYIEKYIDHLTK---QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred HhcC-cchHHHHHHHHhHHHHhhhcCH---HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 9997 7889998887777777765443 35667789999999999999999999888888774
No 260
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=85.76 E-value=40 Score=34.32 Aligned_cols=114 Identities=11% Similarity=0.170 Sum_probs=78.5
Q ss_pred cCCHHHHHhhhc-C-------CCHHHHHHHHHHHHHHhh--CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHH
Q psy355 64 MGGLPVLQPLLE-G-------SDPELRWRAAETVADIVQ--NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS 133 (285)
Q Consensus 64 ~Gg~~~Lv~lL~-s-------~~~~vr~~A~~~lg~~a~--nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs 133 (285)
.|.++.++..|. + .++.-...|++.++++-. .-+..-.-+++.=+++.++.-+++ +.--++..||..||
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s-~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRS-NYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcC-cccchHHHHHHHHH
Confidence 466777777773 2 234455678888888765 222223345555566667777775 55678999999999
Q ss_pred HHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC
Q psy355 134 CLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 181 (285)
Q Consensus 134 ~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~ 181 (285)
.+--+.+..- +-...++....+|++.+-.|+..|+-++..+..+.
T Consensus 486 ~~eeDfkd~~---ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 486 TIEEDFKDNG---ILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHHhcccch---HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 9865544422 22345667788999999999999999999988764
No 261
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=85.32 E-value=14 Score=32.65 Aligned_cols=146 Identities=18% Similarity=0.194 Sum_probs=82.5
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC-CCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355 70 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-SNTTVQVKSLYAVSCLVRDNEECLKEFIK 148 (285)
Q Consensus 70 Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~-~~~~v~~~a~~ALs~l~r~~~~~~~~f~~ 148 (285)
|=.+|+++++.+|..|...|+.+...-|.- .+...-+..|+..+.+. .|...-..++.++..+++........
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--- 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--- 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh---
Confidence 346899999999999999999999876632 12233345555444321 23344444577777776433211111
Q ss_pred cCcHHHHHHhhc-----cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 149 RDGFSVLLRCIQ-----SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 149 ~~gi~~L~~~L~-----~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
+...+..+.+ +-....|..+-.++..+..........+ ..+++..++++.... .||.-.-.+...+..++
T Consensus 78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gE--kDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGE--KDPRNLLLSFKLLKVIL 152 (262)
T ss_pred --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHH
Confidence 2222222222 2245677777777777776543222111 235777888887764 47766656555555555
Q ss_pred hcC
Q psy355 224 KDS 226 (285)
Q Consensus 224 ~~~ 226 (285)
+..
T Consensus 153 ~~~ 155 (262)
T PF14500_consen 153 QEF 155 (262)
T ss_pred Hhc
Confidence 444
No 262
>KOG1566|consensus
Probab=84.96 E-value=30 Score=31.47 Aligned_cols=203 Identities=14% Similarity=0.155 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhhcCc------------------chHHHHHHcCCHHHHHhhhcCCCHHH
Q psy355 21 GAELEKIIKTLKENQD-QKDICIGALDNLSDYVCSI------------------DYANDFLKMGGLPVLQPLLEGSDPEL 81 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~-~~~~~~~al~~L~~lv~~~------------------dna~~~~~~Gg~~~Lv~lL~s~~~~v 81 (285)
+..+++.+..+..+.+ ++..+..+++++..-+.++ .-+..|.+.|.+..++..|.-.+-+-
T Consensus 16 Vr~~rd~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~ 95 (342)
T KOG1566|consen 16 VRRTRDKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFES 95 (342)
T ss_pred HHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchh
Confidence 4555555555555542 2344555555555433211 11345888898888888877666555
Q ss_pred HHHHHHHHHHH-------------------------hhCCHHHHHHHHhcCcH-------HHHHHhhccC----------
Q psy355 82 RWRAAETVADI-------------------------VQNNPFSQNFIIQTDFL-------NLLLTSIEHD---------- 119 (285)
Q Consensus 82 r~~A~~~lg~~-------------------------a~nn~~~q~~v~~~g~l-------~~L~~LL~~~---------- 119 (285)
|..++.+..++ ..|-..+++.++.+|.+ +.|.+++-.+
T Consensus 96 rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~v 175 (342)
T KOG1566|consen 96 RKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYV 175 (342)
T ss_pred hhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHH
Confidence 55555555543 22211134444444432 3333333221
Q ss_pred --CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc----HHHHHHhhccCcHHHHHHHHHHHHHHhcCCc---hHHHHHHH
Q psy355 120 --SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG----FSVLLRCIQSKKEKLVIKSCFLIACLCTDNN---QVKQVLLS 190 (285)
Q Consensus 120 --~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g----i~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~---~~~~~l~~ 190 (285)
+.-.+...|......+.+.+......|+..+- .+.--.++.+.+.-+++.+.-++..+..+.+ ...+++-+
T Consensus 176 q~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss 255 (342)
T KOG1566|consen 176 QLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISS 255 (342)
T ss_pred hccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcC
Confidence 23345666777777777767777777887664 3446678889999999999999999887643 34566666
Q ss_pred CCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 191 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 191 ~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
...+..++.+|..+ ...+|-.|-...+-.+...
T Consensus 256 ~enLKlmM~llrdk---skniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 256 PENLKLMMNLLRDK---SKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHHHHHHhhCc---cccchHHHHHHHHHHhcCC
Confidence 67888999999988 8888888888776655443
No 263
>KOG2073|consensus
Probab=84.65 E-value=8.6 Score=39.59 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=52.3
Q ss_pred chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHH--hhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHH
Q psy355 56 DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI--VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS 133 (285)
Q Consensus 56 dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~--a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs 133 (285)
+.-..|.+.-|++.|+.+| ++.+++- ...+..+.+++-+...++.++.++....++.++..|-..|+
T Consensus 148 ~~v~~~l~hi~~stlMD~L-----------lkli~~de~~~p~~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~ 216 (838)
T KOG2073|consen 148 NFVDLFLKHIDISTLMDFL-----------LKLISTDEPESPRTDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLC 216 (838)
T ss_pred HHHHHHHHHcCccHHHHHH-----------HHhccccCCCCchHHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHH
Confidence 3444566666677766643 3444332 12224567788888999999999998778899999999999
Q ss_pred HHhhC
Q psy355 134 CLVRD 138 (285)
Q Consensus 134 ~l~r~ 138 (285)
.|++.
T Consensus 217 ~iv~~ 221 (838)
T KOG2073|consen 217 AIVRL 221 (838)
T ss_pred HHHhc
Confidence 99997
No 264
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.42 E-value=4.1 Score=34.04 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=56.3
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhcC---CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 152 FSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 152 i~~L~~~L~~~~~~v~~ka~~~l~~L~~~---~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
++.++++.-+++..++..|..++.-+.+. +| .-++|.|+.|..++ ++.++..|...+..+.+..+.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--------~~cvp~lIAL~ts~---~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP--------KQCVPTLIALETSP---NPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--------HHHHhHhhhhhCCC---ChHHHHHHHHHHHHHHHHhHH
Confidence 35667777889999999999999988776 34 23789999999998 999999999999999988875
Q ss_pred H
Q psy355 229 A 229 (285)
Q Consensus 229 ~ 229 (285)
.
T Consensus 79 ~ 79 (187)
T PF12830_consen 79 L 79 (187)
T ss_pred H
Confidence 4
No 265
>KOG1943|consensus
Probab=83.69 E-value=48 Score=34.99 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH---hHHHHHh--cC
Q psy355 76 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE---CLKEFIK--RD 150 (285)
Q Consensus 76 s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~---~~~~f~~--~~ 150 (285)
|=++.+|+.|+++|..++.-.|+ ....+.+|+|+....+ ++...|.-+.-|.+.++.+... ....+-+ ..
T Consensus 555 HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls-~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~ 629 (1133)
T KOG1943|consen 555 HWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLS-KDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIA 629 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcC-CChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhh
Confidence 56899999999999999987775 4556789999988775 5677888777777776654221 1111111 12
Q ss_pred cHH-----HHHHhhccC-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355 151 GFS-----VLLRCIQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 151 gi~-----~L~~~L~~~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~ 224 (285)
|++ ...+-++.+ ....+.-.+.++..+..+.+.....++..++-..+.+.+..+ + .+|+.+..++..+..
T Consensus 630 ~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~---n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 630 GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP---N-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch---H-HHHHHHHHHHHHHHH
Confidence 321 112222222 234555566667777666666666777677777777777555 4 788888888877764
Q ss_pred cC
Q psy355 225 DS 226 (285)
Q Consensus 225 ~~ 226 (285)
..
T Consensus 706 ~y 707 (1133)
T KOG1943|consen 706 TY 707 (1133)
T ss_pred HH
Confidence 43
No 266
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=83.44 E-value=25 Score=29.60 Aligned_cols=130 Identities=13% Similarity=0.100 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhhCChHhHHHHHhc----------------CcHHHHHHhhcc------CcHHHHHHHHHHHHHHhc
Q psy355 122 TTVQVKSLYAVSCLVRDNEECLKEFIKR----------------DGFSVLLRCIQS------KKEKLVIKSCFLIACLCT 179 (285)
Q Consensus 122 ~~v~~~a~~ALs~l~r~~~~~~~~f~~~----------------~gi~~L~~~L~~------~~~~v~~ka~~~l~~L~~ 179 (285)
....-.++..|||+++....+ ..+++. ..+..|+.++.. ....-....+.+++|+++
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred cchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 345667888899998854433 333322 245566666654 223444567788888754
Q ss_pred CCchHHHHHHHCC--c--HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChH
Q psy355 180 DNNQVKQVLLSMG--M--VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNE 255 (285)
Q Consensus 180 ~~~~~~~~l~~~g--~--v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~ 255 (285)
.+..|+.+++.. . +..|+.++.+. +.--|.-++.+|.|++=.....-..-.... .++|-..+--+.+++
T Consensus 88 -~~~gR~~~l~~~~~~~~l~kLl~ft~~~---s~iRR~Gva~~IrNccFd~~~H~~LL~~~~---~~iLp~LLlPLaGpE 160 (192)
T PF04063_consen 88 -LPEGRQFFLDPQRYDGPLQKLLPFTEHK---SVIRRGGVAGTIRNCCFDTDSHEWLLSDDE---VDILPYLLLPLAGPE 160 (192)
T ss_pred -CHHHHHHHhCchhhhhHHHHHHHHhccC---cHHHHHHHHHHHHHhhccHhHHHHhcCchh---hhhHHHHHhhccCCC
Confidence 578888888653 3 66777777776 777788888999888755543211111110 234445555666665
Q ss_pred hhHH
Q psy355 256 VYHK 259 (285)
Q Consensus 256 e~~~ 259 (285)
|+.+
T Consensus 161 e~d~ 164 (192)
T PF04063_consen 161 ELDE 164 (192)
T ss_pred cCCH
Confidence 5443
No 267
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=83.42 E-value=17 Score=27.45 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=52.8
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHh-----hccCCCHHHHHHHHHHHHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTS-----IEHDSNTTVQVKSLYAVSCL 135 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~L~~L-----L~~~~~~~v~~~a~~ALs~l 135 (285)
++..|.+=|+++++.++-.|+.+|-.++.|. +.++..+.....+..+++. ...+.+..||.++...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 3556666678899999999999999999975 5677778777777777653 22234678999998877653
No 268
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.14 E-value=14 Score=32.94 Aligned_cols=70 Identities=10% Similarity=0.145 Sum_probs=49.6
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH-HHHHhcCcHHHHHHhh----c--------cCcHHHHHHHHHHH
Q psy355 108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL-KEFIKRDGFSVLLRCI----Q--------SKKEKLVIKSCFLI 174 (285)
Q Consensus 108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~-~~f~~~~gi~~L~~~L----~--------~~~~~v~~ka~~~l 174 (285)
++|+++.+++. .++.+|..++..+..+..+.+... ..+.+.|-.+++...+ . ..+..+-..|--++
T Consensus 120 iiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 79999999996 688999999999999998776654 2355666666554443 3 22455666666666
Q ss_pred HHHh
Q psy355 175 ACLC 178 (285)
Q Consensus 175 ~~L~ 178 (285)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 6664
No 269
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=82.64 E-value=5.6 Score=37.60 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=65.0
Q ss_pred HHHHHHHHhhcCcch--HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC
Q psy355 43 GALDNLSDYVCSIDY--ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS 120 (285)
Q Consensus 43 ~al~~L~~lv~~~dn--a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~ 120 (285)
-..+-|..++...+. +..+....-+..|+.++.|+++.-|.....++-++-...+..+.. +....-..|.+.+....
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~-Ir~~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSF-IRKSINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHH-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHhcCcc
Confidence 445666667766443 334555556778999999999999999999999988776655543 34446666777776544
Q ss_pred CHHHHHHHHHHHHHHhhCCh
Q psy355 121 NTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 121 ~~~v~~~a~~ALs~l~r~~~ 140 (285)
...--...+.-++.++.|..
T Consensus 188 ~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp --STHHHHHHHHHHHHTT--
T ss_pred cccCHHHHHHHHHHHHhccC
Confidence 45556778888888888854
No 270
>KOG2676|consensus
Probab=82.50 E-value=1.4 Score=40.54 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355 84 RAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE-HDSNTTVQVKSLYAVSCLVRDNEECLKEFI 147 (285)
Q Consensus 84 ~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~-~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~ 147 (285)
+-.+.||++|--++..|+.+.+.|+++.++.-.. ++.++-++...++++-++..+|..+|+.+-
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 4667999999999999999999999998876544 357899999999999999999998886553
No 271
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=82.34 E-value=28 Score=30.85 Aligned_cols=168 Identities=15% Similarity=0.193 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhhcCc-----chHHHHHHcCCHH-HHHhhhcC--CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHH
Q psy355 39 DICIGALDNLSDYVCSI-----DYANDFLKMGGLP-VLQPLLEG--SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLN 110 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~-----dna~~~~~~Gg~~-~Lv~lL~s--~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~ 110 (285)
++....|.+|..++..- +-+..+.+.+.++ -|+++|.+ +++.+-..+++++-+++.--+.+ .|-.|
T Consensus 9 ~dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~------~~~~~ 82 (266)
T PF04821_consen 9 DDCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELL------VESQP 82 (266)
T ss_pred HhHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHh------ccCCC
Confidence 45566677766665332 2244566666665 67776654 47889999999999888532211 11110
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc-----------cCcHHHHHHHHHHHHHHhc
Q psy355 111 LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ-----------SKKEKLVIKSCFLIACLCT 179 (285)
Q Consensus 111 ~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~-----------~~~~~v~~ka~~~l~~L~~ 179 (285)
.+...+... .-+-.... ....+|.+.+.+..+++.+. ..+..+-+-...+++|++.
T Consensus 83 ---------~~~~~~~~~-~~l~~~l~---~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~ 149 (266)
T PF04821_consen 83 ---------KDKNQRRNI-PELLKYLQ---SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLA 149 (266)
T ss_pred ---------CChHHHHHH-HHHHHHHH---HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhc
Confidence 111222111 11111111 12334555444554444431 1256778888899999885
Q ss_pred CC----------------chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 180 DN----------------NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 180 ~~----------------~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
-. ......+.+.|+...|+.+..+. +..++....+..+..|.++..
T Consensus 150 Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~--~~~~f~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 150 IPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSP--QESDFNLLLLEIIYLLFKGQD 211 (266)
T ss_pred CCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCc--cccchhhHHHHHHHHHHcCCC
Confidence 31 14566777899999999988876 234577799999999988874
No 272
>KOG2199|consensus
Probab=82.31 E-value=11 Score=35.25 Aligned_cols=99 Identities=19% Similarity=0.139 Sum_probs=65.5
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHH
Q psy355 25 EKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFI 103 (285)
Q Consensus 25 k~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~-~q~~v 103 (285)
...+...+++-.+.+.---.|+.+..+-.+.|++.+ ++..|.+=|++.+|.|...|+.+++.|+.|... .+..|
T Consensus 10 e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd-----~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EV 84 (462)
T KOG2199|consen 10 EQDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKD-----CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEV 84 (462)
T ss_pred HHHHHHhcCcccccccHHHHHHHHHhhcCCCcccHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHH
Confidence 344555555555544433344444444444555555 577888889999999999999999999988654 45556
Q ss_pred HhcCcHHHHHHhhccCCCHHHHHHH
Q psy355 104 IQTDFLNLLLTSIEHDSNTTVQVKS 128 (285)
Q Consensus 104 ~~~g~l~~L~~LL~~~~~~~v~~~a 128 (285)
........|..++.+.....|+.+.
T Consensus 85 sSr~F~~el~al~~~~~h~kV~~k~ 109 (462)
T KOG2199|consen 85 SSRDFTTELRALIESKAHPKVCEKM 109 (462)
T ss_pred hhhhHHHHHHHHHhhcccHHHHHHH
Confidence 6667788888888843444555443
No 273
>KOG1087|consensus
Probab=81.97 E-value=10 Score=36.47 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=56.9
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHhcCcHHHHHHhhccC-CCHHHHHHHHHHHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTSIEHD-SNTTVQVKSLYAVSC 134 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~-~q~~v~~~g~l~~L~~LL~~~-~~~~v~~~a~~ALs~ 134 (285)
++..|.+-|++.++.++..|+.+|-.|+.|... +...|.+.++++-++++.+.. .+..||.+++..|=.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 345566678888889999999999999998655 455788999999999999976 678999999877743
No 274
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=81.51 E-value=26 Score=35.47 Aligned_cols=82 Identities=23% Similarity=0.324 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHH
Q psy355 77 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLL 156 (285)
Q Consensus 77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~ 156 (285)
..+.-|..|+..||.+++..|..--.+++...++.|+++|..+.+..+...|+.+|.-+.=.-|.....++ ...+.+..
T Consensus 80 ~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L-~~Lf~If~ 158 (668)
T PF04388_consen 80 VKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHL-PDLFNIFG 158 (668)
T ss_pred cCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHH-HHHHHHHH
Confidence 35678999999999999999988888999999999999999999999999999999888766555443333 13334444
Q ss_pred Hhh
Q psy355 157 RCI 159 (285)
Q Consensus 157 ~~L 159 (285)
+++
T Consensus 159 Rl~ 161 (668)
T PF04388_consen 159 RLL 161 (668)
T ss_pred HHH
Confidence 444
No 275
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.20 E-value=35 Score=29.50 Aligned_cols=127 Identities=20% Similarity=0.196 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh-
Q psy355 38 KDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS- 115 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L- 115 (285)
.+.....+..|..++... .+..- .+..|..+...+....+.-+.+.+..+...++..- +.+..++..
T Consensus 15 ~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~L~~~ 83 (234)
T PF12530_consen 15 PELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPLLLLL 83 (234)
T ss_pred hHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHHHHHH
Confidence 466777788888887654 22222 24566666777888888889999999998887643 445545444
Q ss_pred --------hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhh-ccCcHHHHHHHHHHHHHHhcC
Q psy355 116 --------IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCI-QSKKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 116 --------L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L-~~~~~~v~~ka~~~l~~L~~~ 180 (285)
-..+..-........++..+|+..|..- ..-++.+..+| +..+...+.-+.-+++.||..
T Consensus 84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 1111222333444567777777776622 22456778888 788899999999999999944
No 276
>KOG2032|consensus
Probab=81.02 E-value=15 Score=35.33 Aligned_cols=116 Identities=15% Similarity=0.247 Sum_probs=77.6
Q ss_pred hcCcHHHHHHhhc---cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcC
Q psy355 105 QTDFLNLLLTSIE---HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 105 ~~g~l~~L~~LL~---~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~ 180 (285)
+.|.+..++..+. .+++..+|..|+..|+|.+.+.|.....-. .--+..+++.|.++ +..|+-.|..++..++..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 4566666555443 246678999999999999998666543322 12344556666554 688888888877766543
Q ss_pred --CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 181 --NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 181 --~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+.+...+++ .+.-.+..+..+. ++++|..+...+..|+.-.
T Consensus 331 ~~~~~l~~~~l--~ialrlR~l~~se---~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 331 ASNDDLESYLL--NIALRLRTLFDSE---DDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred hhhcchhhhch--hHHHHHHHHHHhc---ChhhhhhHHHHHHHHHHHc
Confidence 344555555 3556777888888 8999988887777776443
No 277
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=80.90 E-value=7.9 Score=37.39 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=37.4
Q ss_pred CHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355 96 NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 96 n~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~ 140 (285)
...+.+++.+.+.++.|+.+|+.+.+..++..|+..|+.|++-+.
T Consensus 51 ~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 51 PTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred hHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 345677788899999999999977788999999999998877543
No 278
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=80.78 E-value=25 Score=27.41 Aligned_cols=94 Identities=16% Similarity=0.240 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc-hHHHHHHHC-CcHHHHHHhccc
Q psy355 126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN-QVKQVLLSM-GMVEQMCVLIDI 203 (285)
Q Consensus 126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~-~~~~~l~~~-g~v~~L~~lL~~ 203 (285)
....--|+.+++.++.....+ ...|.+=|+++++.|+.|+..+|.++|..++ .++..+.+. ..|..+.+.=..
T Consensus 19 gy~~~Eia~~t~~s~~~~~ei-----~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~ 93 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQEL-----LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGP 93 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHHH-----HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCC
Confidence 344556778888766655444 4677888888899999999999999998765 555555544 344555544332
Q ss_pred C-----CCCCccHHHHHHHHHHHHHh
Q psy355 204 E-----DALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 204 ~-----~~~d~~~~e~al~aL~~l~~ 224 (285)
+ +.....+|+.|-.++..|..
T Consensus 94 ~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 94 PDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CCcccCcchhHHHHHHHHHHHHHHhc
Confidence 3 11223577777777766654
No 279
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=80.27 E-value=54 Score=31.01 Aligned_cols=217 Identities=15% Similarity=0.173 Sum_probs=120.3
Q ss_pred CHHhHHHHHHHHHHhc---CCHHHHHHHHHH-HHhccCC---CHHHHHHHHHHHHHhhcCc-----chHHHHHHcCCHHH
Q psy355 2 NEANRGFLLDALNSMM---VNVGAELEKIIK-TLKENQD---QKDICIGALDNLSDYVCSI-----DYANDFLKMGGLPV 69 (285)
Q Consensus 2 ~~e~~~~L~~al~~~~---~d~~~~mk~~l~-~l~~~~~---~~~~~~~al~~L~~lv~~~-----dna~~~~~~Gg~~~ 69 (285)
|+.+|++|+..+..+- .+--..|++++. ++.+.-. ..--....|+-+..++.+- +.-..|. ...
T Consensus 146 D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl----~~v 221 (409)
T PF01603_consen 146 DPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFL----RKV 221 (409)
T ss_dssp THHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHH----HHT
T ss_pred CHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHH----HHH
Confidence 5667777777777652 333333433332 2222111 1122334455555555431 1111222 345
Q ss_pred HHhhhcCCCH-HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355 70 LQPLLEGSDP-ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK 148 (285)
Q Consensus 70 Lv~lL~s~~~-~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~ 148 (285)
|++|.+++.- ....+=..++...+..+|.....+++ .|++.--. ++..=..-.+.-|..++...++..-.-+.
T Consensus 222 llPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~-----~llk~WP~-t~s~Kev~FL~el~~il~~~~~~~f~~i~ 295 (409)
T PF01603_consen 222 LLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIK-----GLLKHWPK-TNSQKEVLFLNELEEILEVLPPEEFQKIM 295 (409)
T ss_dssp TGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHH-----HHHHHS-S-S-HHHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHH-----HHHHhCCC-CCchhHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666665443 33555666777777777766555432 33333332 34444455667778887766554322223
Q ss_pred cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCC---cHHHHHHhcccC--CCCCccHHHHHHHHHHHHH
Q psy355 149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG---MVEQMCVLIDIE--DALDTEMNEHLLSALASLI 223 (285)
Q Consensus 149 ~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g---~v~~L~~lL~~~--~~~d~~~~e~al~aL~~l~ 223 (285)
...+..+.++++|++.+|-.+|..++.| +... .++... +++.+..-|... +.=+..++..+..++..+.
T Consensus 296 ~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~ 369 (409)
T PF01603_consen 296 VPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILM 369 (409)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4567788899999999999999876442 2333 233332 556666655432 1116789999999999999
Q ss_pred hcChHHHhhcc
Q psy355 224 KDSTEAQSLCR 234 (285)
Q Consensus 224 ~~~~~~~~~~~ 234 (285)
..+++....|.
T Consensus 370 ~~d~~lf~~~~ 380 (409)
T PF01603_consen 370 EMDPKLFDKCA 380 (409)
T ss_dssp TTSHHHHHHHH
T ss_pred HhCHHHHHHHH
Confidence 99998888774
No 280
>KOG1822|consensus
Probab=80.07 E-value=8.6 Score=42.58 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=81.3
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
.+..++..|.+++|..|..++.++|.+++--+. ...-.+....+++-+.+..++-.|.--..|++++-|+.-.....
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~---~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGS---APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 356677788899999999999999999985332 12223466777777777778888888889999998853322111
Q ss_pred HHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcC
Q psy355 146 FIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~ 180 (285)
=.-..++..+.-+.+++ ++.||+.+..++..++..
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s 989 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDS 989 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcC
Confidence 11235788888888776 569999999888877765
No 281
>KOG0211|consensus
Probab=79.91 E-value=51 Score=33.84 Aligned_cols=131 Identities=15% Similarity=0.183 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~ 118 (285)
..+..+...+...+-.... +.++.-..+..-.+-+...|.||..++.-+|++++. ..+.....+.+|.+.+|...
T Consensus 213 ~sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~D 287 (759)
T KOG0211|consen 213 QSRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRD 287 (759)
T ss_pred hcchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhc
Confidence 3455666666655544332 566666666667788889999999999999998865 34478889999999999996
Q ss_pred CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355 119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 177 (285)
Q Consensus 119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L 177 (285)
+ ...||..|.-++.++........ .. ..-+.+.++....+++.+++.-.+-....|
T Consensus 288 d-qdsVr~~a~~~~~~l~~l~~~~~-d~-~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L 343 (759)
T KOG0211|consen 288 D-QDSVREAAVESLVSLLDLLDDDD-DV-VKSLTESLVQAVEDGSWRVSYMVADKFSEL 343 (759)
T ss_pred c-hhhHHHHHHHHHHHHHHhcCCch-hh-hhhhhHHHHHHhcChhHHHHHHHhhhhhhH
Confidence 4 46899988888877755433221 11 134566777777776666665554444444
No 282
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=78.79 E-value=10 Score=29.54 Aligned_cols=84 Identities=26% Similarity=0.320 Sum_probs=55.8
Q ss_pred CHHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHH
Q psy355 2 NEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPEL 81 (285)
Q Consensus 2 ~~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~v 81 (285)
+.+||.-+..+|.+..++-.+.+.+.+..-.... ..+....++.-+..++.-++ ...+...+-++.+..+|.+ +.+
T Consensus 65 ~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~-~~~~~~~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~~--~~~ 140 (148)
T PF08389_consen 65 SQERRRELKDALRSNSPDILEILSQILSQSSSEA-NEELVKAALKCLKSWISWIP-IELIINSNLLNLIFQLLQS--PEL 140 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCC-HHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTS--CCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-HHHHHHHHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcCC--HHH
Confidence 4678888888888875444444444443332221 15668888999999998766 4555556778888888854 444
Q ss_pred HHHHHHHH
Q psy355 82 RWRAAETV 89 (285)
Q Consensus 82 r~~A~~~l 89 (285)
+..|+.+|
T Consensus 141 ~~~A~~cl 148 (148)
T PF08389_consen 141 REAAAECL 148 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88888775
No 283
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=78.58 E-value=41 Score=31.40 Aligned_cols=120 Identities=21% Similarity=0.190 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH-Hh----ccCCCHHHHHHHHHHHHHhhcCcc-------------hHHHHHHcCCHH
Q psy355 7 GFLLDALNSMMVNVGAELEKIIKT-LK----ENQDQKDICIGALDNLSDYVCSID-------------YANDFLKMGGLP 68 (285)
Q Consensus 7 ~~L~~al~~~~~d~~~~mk~~l~~-l~----~~~~~~~~~~~al~~L~~lv~~~d-------------na~~~~~~Gg~~ 68 (285)
.||+...+.........|-..+.. |+ ++...-..+-.|+--+.-+..... +-.+|...-.+|
T Consensus 233 dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~p 312 (370)
T PF08506_consen 233 DFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLP 312 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHH
Confidence 456655555433333444443332 22 333334667777777777765542 223454444445
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHH
Q psy355 69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 132 (285)
Q Consensus 69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~AL 132 (285)
-|. -=.+..|-+|..|++.+......-|. +.+ .+++|.+++.|.+ ++..|+..|+.||
T Consensus 313 eL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~~-~~~vv~tyAA~~i 370 (370)
T PF08506_consen 313 ELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQS-SSYVVHTYAAIAI 370 (370)
T ss_dssp HHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred Hhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhCC-CCcchhhhhhhhC
Confidence 444 11257789999999999998865553 223 3489999999997 5678999998876
No 284
>KOG1078|consensus
Probab=78.44 E-value=82 Score=32.26 Aligned_cols=155 Identities=9% Similarity=0.198 Sum_probs=92.9
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH---
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL--- 143 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~--- 143 (285)
++.+=.+|.|....|...|+++|.++..-++..-.- ++..|--++++ +...+|-+|...|..++.-+|...
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flss-p~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSS-PKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcC-cHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 344455788899999999999999998777653322 56666666665 678999999999999887766642
Q ss_pred ----HHHH-hcC---cHHHHHHhhccCc----HHHHHHHHHHHHHHhcCCc----hHHHH------HHHCCcHHHHHHhc
Q psy355 144 ----KEFI-KRD---GFSVLLRCIQSKK----EKLVIKSCFLIACLCTDNN----QVKQV------LLSMGMVEQMCVLI 201 (285)
Q Consensus 144 ----~~f~-~~~---gi~~L~~~L~~~~----~~v~~ka~~~l~~L~~~~~----~~~~~------l~~~g~v~~L~~lL 201 (285)
+.++ +.+ .-..+..+|+.+. .++....+.+++++..+.. +..+. ....+.+.-|..+|
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 2222 111 1123445555542 4555555555555554432 00110 01123444555555
Q ss_pred ccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355 202 DIEDALDTEMNEHLLSALASLIKDSTEA 229 (285)
Q Consensus 202 ~~~~~~d~~~~e~al~aL~~l~~~~~~~ 229 (285)
... +--+++.....++..++..+|++
T Consensus 401 r~e--Gg~e~K~aivd~Ii~iie~~pds 426 (865)
T KOG1078|consen 401 REE--GGFEFKRAIVDAIIDIIEENPDS 426 (865)
T ss_pred Hhc--cCchHHHHHHHHHHHHHHhCcch
Confidence 542 35667777777777777766643
No 285
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=78.42 E-value=7 Score=34.17 Aligned_cols=84 Identities=13% Similarity=0.182 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHhcC-------cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHH-hcC
Q psy355 79 PELRWRAAETVADIVQNNPFSQNFIIQTD-------FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFI-KRD 150 (285)
Q Consensus 79 ~~vr~~A~~~lg~~a~nn~~~q~~v~~~g-------~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~-~~~ 150 (285)
-.-|..|+.+++.++-. +.+-+.++..+ .+..|+++|...++...|+.|+--|++++.+.......+. +.+
T Consensus 138 lSPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 35688999999998753 22344455544 4556777777667889999999999999999877664444 467
Q ss_pred cHHHHHHhhccCc
Q psy355 151 GFSVLLRCIQSKK 163 (285)
Q Consensus 151 gi~~L~~~L~~~~ 163 (285)
.+..|+.++...+
T Consensus 217 ~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 217 CISHLIAFIEDAE 229 (257)
T ss_pred hHHHHHHHHHHHH
Confidence 8999999987654
No 286
>KOG1820|consensus
Probab=77.94 E-value=67 Score=33.28 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=104.2
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhc
Q psy355 71 QPLLEGSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKR 149 (285)
Q Consensus 71 v~lL~s~~~~vr~~A~~~lg~~a~nn~-~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~ 149 (285)
..-+.|++..-|..|+..+.-+..+.. ..+ -...|.+-.+++....+.+..+...|+..|.-|+.+.......+. .
T Consensus 259 ~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~--~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~ 335 (815)
T KOG1820|consen 259 ETEMLSKKWKDRKEALEELVAILEEAKKEIV--KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-K 335 (815)
T ss_pred HHhhhccchHHHHHHHHHHHHHHhccccccc--cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-H
Confidence 334568888899999999988887665 111 122466677777777778888999999999999998887766665 5
Q ss_pred CcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 150 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 150 ~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+.++.++..+...-..++..+.-++-..+...+- ..+.+.+...+++. ++.++..+...+...+....
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~k---np~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGK---NPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCC---ChhhHHHHHHHHHHHHhhcC
Confidence 6778888888877666666555555544443221 13567777888888 99999998888888877665
No 287
>KOG2038|consensus
Probab=77.76 E-value=46 Score=33.97 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=59.1
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHH
Q psy355 108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV 187 (285)
Q Consensus 108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~ 187 (285)
.|..|..+- +++=+.++.+++..|-.+..+.|.+... .+..+++-|..+..++-.+|..+|..|...+|..+..
T Consensus 305 fievLe~lS-~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELS-KDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHc-cccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 344444333 3566789999999999999998886543 4567889999999999999999999999988876544
Q ss_pred HH
Q psy355 188 LL 189 (285)
Q Consensus 188 l~ 189 (285)
++
T Consensus 379 vi 380 (988)
T KOG2038|consen 379 VI 380 (988)
T ss_pred hH
Confidence 33
No 288
>KOG2199|consensus
Probab=76.39 E-value=37 Score=31.83 Aligned_cols=93 Identities=11% Similarity=0.194 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcc-c
Q psy355 126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLID-I 203 (285)
Q Consensus 126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~-~ 203 (285)
-..+..++-.+..++..- .+++..|.+-|.+.++.|.-.|..++..++.+ +..++..+-+..+...|..++. +
T Consensus 26 W~~IlDvCD~v~~~~~~~-----kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~ 100 (462)
T KOG2199|consen 26 WSLILDVCDKVGSDPDGG-----KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESK 100 (462)
T ss_pred HHHHHHHHHhhcCCCccc-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhc
Confidence 344555566655555322 24677888889999999999999999988876 6778889999999999999998 4
Q ss_pred CCCCCccHHHHHHHHHHHHHhcC
Q psy355 204 EDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 204 ~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
. .+.++++.-..+...+..+
T Consensus 101 ~---h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 101 A---HPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred c---cHHHHHHHHHHHHHHHHHh
Confidence 4 7888888777777666533
No 289
>KOG2137|consensus
Probab=76.30 E-value=68 Score=32.40 Aligned_cols=138 Identities=20% Similarity=0.143 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh-hcCCCHHHHHHHHHHHHHHhh
Q psy355 18 VNVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQ 94 (285)
Q Consensus 18 ~d~~~~mk~~l~~l~~~~~~--~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~ 94 (285)
...-+....+++.|-...++ ......+|..+--..+.+| -.+++.-.+|.|-.+ +.+.+..++..++-+++.+++
T Consensus 381 t~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q 458 (700)
T KOG2137|consen 381 TPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ 458 (700)
T ss_pred CChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH
Confidence 45556666777777666644 3556677888888888888 677888889999885 678999999999999999995
Q ss_pred CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCc
Q psy355 95 NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK 163 (285)
Q Consensus 95 nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~ 163 (285)
.-+. ..-..-++++.+..+. .++.+.-..+...-++....+.. ..+...+.+|.++.+...+.
T Consensus 459 ~lD~----~~v~d~~lpi~~~~~~-~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 459 RLDK----AAVLDELLPILKCIKT-RDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHH----HHhHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 4332 2222345556666654 45677666666665555444443 34666677787777665543
No 290
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=76.06 E-value=25 Score=35.59 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcC
Q psy355 122 TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 122 ~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~ 180 (285)
+.-|..++.-||.+++..|+....+.+...+.-|+++|+.+ +.-+..-|..+|.-|+=.
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999999876 677777777777766544
No 291
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=76.06 E-value=55 Score=28.82 Aligned_cols=100 Identities=11% Similarity=0.120 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCH-------HHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355 76 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNT-------TVQVKSLYAVSCLVRDNEECLKEFIK 148 (285)
Q Consensus 76 s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~-------~v~~~a~~ALs~l~r~~~~~~~~f~~ 148 (285)
.++......|+.+||.. -+.-++|+++++++.+.+. .+-...-..+.+++
T Consensus 53 ~~~~~~~~~a~~LLaq~-----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------ 109 (249)
T PF06685_consen 53 DEEYNLHFYALYLLAQF-----------REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------ 109 (249)
T ss_pred CcchHHHHHHHHHHHHH-----------hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------
Confidence 34444456777777643 2345899999999864321 11122222233333
Q ss_pred cCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHh
Q psy355 149 RDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL 200 (285)
Q Consensus 149 ~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~l 200 (285)
.|-++.|.+++.++ +.=+|..|..++..++..++..|..+++ ++..+...
T Consensus 110 ~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 110 DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHH
Confidence 34455666666655 4667788999999999999988888874 56555554
No 292
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=75.86 E-value=68 Score=29.77 Aligned_cols=84 Identities=12% Similarity=0.230 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHH
Q psy355 76 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVL 155 (285)
Q Consensus 76 s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L 155 (285)
+.+..+|..++--|++-+. ++.++..+...|....+++.+...++..+-.-+..++-.+..........+.+.+...++
T Consensus 33 ~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll 111 (361)
T PF07814_consen 33 SSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLL 111 (361)
T ss_pred CCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHH
Confidence 4566889999999999886 688899999999999999999654443344444444444443333334444455666777
Q ss_pred HHhhc
Q psy355 156 LRCIQ 160 (285)
Q Consensus 156 ~~~L~ 160 (285)
+.++.
T Consensus 112 ~~Ll~ 116 (361)
T PF07814_consen 112 LKLLK 116 (361)
T ss_pred HHHhc
Confidence 78777
No 293
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=75.21 E-value=7.9 Score=29.69 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=33.2
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ 105 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~ 105 (285)
|++.|+.-|..++++|...|..+|-.++..+ .+.+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 4889999999999999999999999999876 55666554
No 294
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=75.14 E-value=63 Score=29.92 Aligned_cols=135 Identities=16% Similarity=0.239 Sum_probs=86.7
Q ss_pred HHHcCCHHHHHhhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh-hccCC----C---HHHHHHHHHH
Q psy355 61 FLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS-IEHDS----N---TTVQVKSLYA 131 (285)
Q Consensus 61 ~~~~Gg~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L-L~~~~----~---~~v~~~a~~A 131 (285)
+.+...+..|..+=. ...+.+|..+++.+.++.+... +..+....+..++.+| ++... . +.--+.-++.
T Consensus 5 ll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~--~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~~ 82 (353)
T PF10257_consen 5 LLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQ--QPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLNT 82 (353)
T ss_pred HHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcc--cccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHHH
Confidence 344556777877644 4678999999999999997543 2344455677788888 55321 1 2233456778
Q ss_pred HHHHhhCChHhHHHHHhcCc--------------------------HHHHHHhhccCcHHHHH---HHHHHHHHHhcCCc
Q psy355 132 VSCLVRDNEECLKEFIKRDG--------------------------FSVLLRCIQSKKEKLVI---KSCFLIACLCTDNN 182 (285)
Q Consensus 132 Ls~l~r~~~~~~~~f~~~~g--------------------------i~~L~~~L~~~~~~v~~---ka~~~l~~L~~~~~ 182 (285)
|+.-+|.+|.-...|...+. +..|+..+.+. .++-. .+.-.+..+..+++
T Consensus 83 lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~~~ 161 (353)
T PF10257_consen 83 LCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASEDP 161 (353)
T ss_pred HHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCCCc
Confidence 88888888887777775432 35667777765 34434 44444445555577
Q ss_pred hHHHHHHH-CCcHHHHH
Q psy355 183 QVKQVLLS-MGMVEQMC 198 (285)
Q Consensus 183 ~~~~~l~~-~g~v~~L~ 198 (285)
...+++++ ..+.+.++
T Consensus 162 ~~~~~i~~~S~fc~~la 178 (353)
T PF10257_consen 162 ALAQYIVEHSDFCPVLA 178 (353)
T ss_pred HHHHHHHHcchhHHHHH
Confidence 88888888 45555444
No 295
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=74.48 E-value=68 Score=29.12 Aligned_cols=97 Identities=21% Similarity=0.329 Sum_probs=68.7
Q ss_pred cCCHHHHHhhhcC--CCHHHHHHHHHHHHHHhhCCHH--HHHHHHhcCcHHHHHHhhccCC--CHHHHHHHHHHHHHHhh
Q psy355 64 MGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNPF--SQNFIIQTDFLNLLLTSIEHDS--NTTVQVKSLYAVSCLVR 137 (285)
Q Consensus 64 ~Gg~~~Lv~lL~s--~~~~vr~~A~~~lg~~a~nn~~--~q~~v~~~g~l~~L~~LL~~~~--~~~v~~~a~~ALs~l~r 137 (285)
.|-+..++..+.. .+...|.+=+++|-+...+-+. -|..+.+.|.++.|+.-+-++. +..+.-...--||-+++
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 4455566664433 4667888888899888875433 5778899999999998876543 33677788899999999
Q ss_pred CChHhHHHHHh---cCcHHHHHHhhc
Q psy355 138 DNEECLKEFIK---RDGFSVLLRCIQ 160 (285)
Q Consensus 138 ~~~~~~~~f~~---~~gi~~L~~~L~ 160 (285)
+++.+.+.|-. ...++.+++.+.
T Consensus 174 ~n~~~f~~l~~~l~~~kF~~fl~~v~ 199 (303)
T PF12463_consen 174 FNRDAFQRLNKYLNNDKFQRFLEVVS 199 (303)
T ss_pred CCHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99998877753 224445554443
No 296
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=74.13 E-value=9.3 Score=30.85 Aligned_cols=104 Identities=14% Similarity=0.105 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHH
Q psy355 21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPF 98 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~ 98 (285)
.++.++.++.|.++... +....++-|.+-|.. .|.| ..+|.+.+..+++= ..++. --+..|...||++..+-
T Consensus 21 a~Qt~~lielLk~~~~~--~~~~lldLL~~RV~PGVD~A-A~VKA~FL~~ia~g~~~~~~-Is~~~Av~LLGtM~GGY-- 94 (154)
T PF11791_consen 21 AEQTAELIELLKNPPAG--EEAFLLDLLTNRVPPGVDEA-AYVKAEFLAAIAKGEISSPL-ISPAEAVELLGTMLGGY-- 94 (154)
T ss_dssp HHHHHHHHHHHHS--TT---HHHHHHHHHHSS--TT-HH-HHHHHHHHHHHHTTSS-BTT-B-HHHHHHHHTTS-SST--
T ss_pred HHHHHHHHHHHhCCCCc--cHHHHHHHHHhcCCCCCChH-HHHHHHHHHHHHcCCccCCC-cCHHHHHHHHhhccCCC--
Confidence 78888899999988864 333556666666644 3433 34565655555542 33332 23678899999887542
Q ss_pred HHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355 99 SQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 99 ~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~ 140 (285)
-+++|+.+|.+ .+..+...|+-+|++.+-=+.
T Consensus 95 ---------NV~~LI~~L~~-~d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 95 ---------NVQPLIDLLKS-DDEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp ---------THHHHHHGG---G-TTTHHHHHHHHHT--TTCC
T ss_pred ---------cHHHHHHHHcC-CcHHHHHHHHHHHHhhHHHHh
Confidence 26789999975 466899999999998765443
No 297
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=73.71 E-value=44 Score=26.58 Aligned_cols=76 Identities=12% Similarity=0.218 Sum_probs=56.5
Q ss_pred cHHHHHHhhc-cCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHH-HHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 151 GFSVLLRCIQ-SKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQ-MCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 151 gi~~L~~~L~-~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~-L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
++..|.+=|. +.++.++..|..++-.++.+ ++.+...+.+.+++.. |+.++....+.+..++.+++..+.......
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 3445555555 45889999998888888776 6788888899999987 999997431124588999999988876443
No 298
>KOG0413|consensus
Probab=73.62 E-value=16 Score=38.08 Aligned_cols=109 Identities=10% Similarity=0.154 Sum_probs=83.3
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHH
Q psy355 108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV 187 (285)
Q Consensus 108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~ 187 (285)
++..+++-++.+....+++.|+.-+-++..++..+- .|- .|+..|..+..+.-..++++++..+..+...+|-..
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~-~fe--~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~-- 651 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEAS-KFE--VVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLF-- 651 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccchhh-cch--hHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhh--
Confidence 667777778765566899999988888877765532 232 357788888888889999999999999988887554
Q ss_pred HHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355 188 LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 188 l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~ 224 (285)
-++..|+..|+.++... +..+.++++..|-.++.
T Consensus 652 ~~~~~wl~~li~~~~d~---es~v~e~a~~~i~k~l~ 685 (1529)
T KOG0413|consen 652 SLSSKWLHTLISMLNDT---ESDVTEHARKLIMKVLT 685 (1529)
T ss_pred hhhHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHh
Confidence 34557888888888887 88899999886665553
No 299
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=73.15 E-value=15 Score=32.45 Aligned_cols=68 Identities=18% Similarity=0.053 Sum_probs=42.8
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 155 LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 155 L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
|-..|.+++..+|.+|..+|+.++..-|... .+..-+..|+..+.+. -.|......++.++..|++..
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~r-l~D~~~~~~~l~gl~~L~~~~ 71 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSR-LDDHACVQPALKGLLALVKMK 71 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHH-hccHhhHHHHHHHHHHHHhCc
Confidence 4456888999999999999999888744211 2222234444443332 115555666688888887544
No 300
>KOG0211|consensus
Probab=72.61 E-value=58 Score=33.46 Aligned_cols=147 Identities=13% Similarity=0.129 Sum_probs=93.4
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355 68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFI 147 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~ 147 (285)
+++-.+.......+|..++..+-.++...+..+. ..-.+|.+.++-..+ --.-|..++...+...-..++ ..+
T Consensus 162 ~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~---~~~lv~l~~~l~~~d-~~~sr~sacglf~~~~~~~~~---~~v 234 (759)
T KOG0211|consen 162 PPLELLATVEETGVREKAVESLLKVAVGLPKEKL---REHLVPLLKRLATGD-WFQSRLSACGLFGKLYVSLPD---DAV 234 (759)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH---HHHHHHHHHHccchh-hhhcchhhhhhhHHhccCCCh---HHH
Confidence 3444444556678899999999998887776444 222444444444321 112344454444444333221 344
Q ss_pred hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 148 KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 148 ~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+....+...++-+...+.++.-++.-+++++.. .....+..++++.+.+++..+ ...+|+.|..++..+.....
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~Dd---qdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDD---QDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcc---hhhHHHHHHHHHHHHHHhcC
Confidence 455556666667777888888888777777654 333667778888888888877 77889888888888776553
No 301
>KOG1078|consensus
Probab=72.56 E-value=1.2e+02 Score=31.14 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=59.4
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355 152 FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS 231 (285)
Q Consensus 152 i~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~ 231 (285)
++.+-.+|++...-+.-+|+.++.+|-...+..... .+..|--+++++ .+.+|=.|.++|-.++...|+++.
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp---~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSP---KVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCc---HHHHHHHHHHHHHHHHHhCCcccc
Confidence 355566777888999999999999987665433222 677777788888 899999999999999999999886
Q ss_pred hc
Q psy355 232 LC 233 (285)
Q Consensus 232 ~~ 233 (285)
.|
T Consensus 319 ~c 320 (865)
T KOG1078|consen 319 VC 320 (865)
T ss_pred cc
Confidence 66
No 302
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=72.55 E-value=11 Score=30.32 Aligned_cols=127 Identities=13% Similarity=0.263 Sum_probs=85.7
Q ss_pred hCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC--ChHhHHHHHhcCcHHHHHHh-hccCcHHHHHHH
Q psy355 94 QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD--NEECLKEFIKRDGFSVLLRC-IQSKKEKLVIKS 170 (285)
Q Consensus 94 ~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~--~~~~~~~f~~~~gi~~L~~~-L~~~~~~v~~ka 170 (285)
+|++..=+.+.+...+..+++++.......++...+..+|=+..+ ++.+.--+...+-+.-++.. +.-.+.++..--
T Consensus 13 q~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yY 92 (149)
T PF09758_consen 13 QNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYY 92 (149)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHH
Confidence 678889999999999999999999866779999999999988775 33343334455666555544 333467777777
Q ss_pred HHHHHHHhcC-CchHHHHHHH--CC---cHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 171 CFLIACLCTD-NNQVKQVLLS--MG---MVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 171 ~~~l~~L~~~-~~~~~~~l~~--~g---~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
..++..|+.. +++..+.+.. .+ ....-+++..++ |.-+|..+-..+.++.
T Consensus 93 IsfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~---d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 93 ISFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHP---DSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCc---chHHHHHHHHHHHhhc
Confidence 7777777643 3333333332 12 233445677777 7777777766666553
No 303
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=72.36 E-value=40 Score=25.60 Aligned_cols=99 Identities=12% Similarity=0.198 Sum_probs=61.1
Q ss_pred HhHHHHHHHHHHhc---CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHH
Q psy355 4 ANRGFLLDALNSMM---VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPE 80 (285)
Q Consensus 4 e~~~~L~~al~~~~---~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~ 80 (285)
.+.+|+..+|+-+. ++....|+..+..=.+...+-+-.....+-|..+.+ ...-+...+-+
T Consensus 5 ~~~~~~~~ilr~LQLlCEghn~~lQnylR~Q~~~~~s~nlV~~~~~ll~~l~~----------------~~~~~~~~~~~ 68 (109)
T PF08454_consen 5 QDMEIIQRILRFLQLLCEGHNLDLQNYLRQQPNNKNSYNLVSETVDLLDSLQE----------------FGKDINSDNIE 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHH----------------HHHHhhHHHHH
Confidence 34556665555553 566666666654433332222222222222222220 22233445667
Q ss_pred HHHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHhhcc
Q psy355 81 LRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 81 vr~~A~~~lg~~a~n-n~~~q~~v~~~g~l~~L~~LL~~ 118 (285)
+-..+..+|...+|| ++..|.++.+..++..+..+|..
T Consensus 69 ~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 69 LIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred HHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 788899999999999 99999999999999999888864
No 304
>KOG2038|consensus
Probab=72.06 E-value=20 Score=36.47 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=54.8
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 153 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 153 ~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
++|..+-..+-..++.+|...|++|+.+.|+.-.. ++..||+-|..+ +..+-.+|-..|..|....|.
T Consensus 307 evLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDp---qnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 307 EVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDP---QNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCc---chhhhhhHHHHHHHHHhhCCc
Confidence 44444444456899999999999999999987644 456788888888 888999999999999988885
No 305
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=71.70 E-value=1.1e+02 Score=30.30 Aligned_cols=182 Identities=15% Similarity=0.169 Sum_probs=98.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-C----CHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh-hcCC
Q psy355 4 ANRGFLLDALNSMMVNVGAELEKIIKTLKENQ-D----QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL-LEGS 77 (285)
Q Consensus 4 e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~-~----~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l-L~s~ 77 (285)
.-+.|.++||++....+.....+.+..++.+. . +..+...-|.+|...+..+|+-.. +-+..++++ ...-
T Consensus 11 ~~~~~V~~AL~~~~~Gd~~~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~~~~----~LV~ail~~~W~~~ 86 (563)
T PF05327_consen 11 MYKSFVRSALESHEKGDSSQYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDSSCK----QLVEAILSLNWLGR 86 (563)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-SCCH----HHHHHHHT-TGGGS
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHcCCCCCC
Confidence 45679999999997667777777777774333 2 235788889999999988875311 113344443 1145
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCC-------------HHHHHHHHHHHHHHhhCChHhHH
Q psy355 78 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN-------------TTVQVKSLYAVSCLVRDNEECLK 144 (285)
Q Consensus 78 ~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~-------------~~v~~~a~~ALs~l~r~~~~~~~ 144 (285)
++.++..-...|++++..++..-.. ++..|++.+..... ..+....-.+|..|++-.|.+..
T Consensus 87 ~~~~v~~y~~Fl~~Lvsa~~~yl~~-----vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~s~~ 161 (563)
T PF05327_consen 87 DEDFVEAYIQFLINLVSAQPKYLSP-----VLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRLVPTSPS 161 (563)
T ss_dssp -HHHHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHGGGS-HHHHHH---------------HHHHHHHHHHH-GGGHH
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHHcCCCHH
Confidence 7788888888999998776655444 45566666664211 12223466677777766666544
Q ss_pred HHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHh
Q psy355 145 EFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL 200 (285)
Q Consensus 145 ~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~l 200 (285)
.+. +.|.+.+-.. +...+..-..-+-.++..-|..+..+.. -++..|+++
T Consensus 162 ~L~-----~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L~~~Il~-lIi~rLi~i 213 (563)
T PF05327_consen 162 FLI-----PILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPELRSDILS-LIIERLIKI 213 (563)
T ss_dssp HHH-----HHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGGHHHHHH-HHHHHHHHH
T ss_pred HHH-----HHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHHHHHHHH-HHHHHHHHH
Confidence 332 3333333322 3333333333333344456767666653 455666654
No 306
>KOG0567|consensus
Probab=69.73 E-value=13 Score=33.00 Aligned_cols=75 Identities=15% Similarity=0.289 Sum_probs=48.5
Q ss_pred HHHcCCHHHHHhh---hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHh
Q psy355 61 FLKMGGLPVLQPL---LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLV 136 (285)
Q Consensus 61 ~~~~Gg~~~Lv~l---L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~ 136 (285)
+...||=..+..+ |.-+++-.|..++.++|.+-. | -++|.|.+.|.. ...+.||-.|+.||+.|+
T Consensus 180 LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 180 LRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred hhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc
Confidence 3556665544444 445778888999999987643 2 257777766543 346788888888888875
Q ss_pred hCChHhHHHHHh
Q psy355 137 RDNEECLKEFIK 148 (285)
Q Consensus 137 r~~~~~~~~f~~ 148 (285)
. +.+.+.+.+
T Consensus 249 ~--e~~~~vL~e 258 (289)
T KOG0567|consen 249 D--EDCVEVLKE 258 (289)
T ss_pred C--HHHHHHHHH
Confidence 4 455444433
No 307
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=69.26 E-value=31 Score=31.58 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHhcC--cHHHHHHhhccC--CCHHHHHHHHHHHHHHhhCChHhH
Q psy355 80 ELRWRAAETVADIVQNNPFSQNFIIQTD--FLNLLLTSIEHD--SNTTVQVKSLYAVSCLVRDNEECL 143 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g--~l~~L~~LL~~~--~~~~v~~~a~~ALs~l~r~~~~~~ 143 (285)
.+|-.|..++..+. .++..+..++..+ .+.-|+.++..+ -...+|..|+.+|.+|+.+.+...
T Consensus 237 ~iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~ 303 (329)
T PF06012_consen 237 QIRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCS 303 (329)
T ss_pred HHHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHH
Confidence 34555555555444 5667788888887 999999999863 356899999999999999765443
No 308
>KOG2676|consensus
Probab=69.21 E-value=5 Score=37.03 Aligned_cols=63 Identities=10% Similarity=0.051 Sum_probs=51.5
Q ss_pred HHHHHHHHhhCChHhHHHHHhcCcHHHHHHhh--ccCcHHHHHHHHHHHHHHhcCCchHHHHHHH
Q psy355 128 SLYAVSCLVRDNEECLKEFIKRDGFSVLLRCI--QSKKEKLVIKSCFLIACLCTDNNQVKQVLLS 190 (285)
Q Consensus 128 a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L--~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~ 190 (285)
...-|+++|..++.+++.+-+.||++.++.-. .+.++=+++....++..|+.++...++++-.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 44578899999999999999999999887653 3457999999999999999988776665543
No 309
>PRK14707 hypothetical protein; Provisional
Probab=68.78 E-value=2.3e+02 Score=32.86 Aligned_cols=148 Identities=17% Similarity=0.169 Sum_probs=102.3
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHH
Q psy355 75 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSV 154 (285)
Q Consensus 75 ~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~ 154 (285)
+-++..|...|+..|+.-.-..+..++. ++.-.+...++-|+.=++..+..+|+.+|..=+...+...+ =++.-|+.-
T Consensus 300 Kwpd~~vc~~Aa~~la~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~ 377 (2710)
T PRK14707 300 KWADLPVCAEAAIALAERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSS 377 (2710)
T ss_pred cCCCchHHHHHHHHHHHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHH
Confidence 3588888888888888877677876643 34445666777777656778888888888877776665544 334668888
Q ss_pred HHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 155 LLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 155 L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+++.|+. ++..+-..|+..|..=+.++++.+..+--+|+-..|-.+=+=+ +..+-..+..+|..-+.+.+
T Consensus 378 ~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWP---d~~~C~~aa~~lA~~la~d~ 448 (2710)
T PRK14707 378 VLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWP---DLPICGQAVSALAGRLAHDT 448 (2710)
T ss_pred HHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCC---cchhHHHHHHHHHHHHhccH
Confidence 8888886 4444444444445444457888888888777777666655556 77777777777766666554
No 310
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=67.90 E-value=2.7 Score=23.28 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355 81 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 117 (285)
Q Consensus 81 vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~ 117 (285)
||..|+++||.+-. +. ++|+|++.|+
T Consensus 1 VR~~Aa~aLg~igd--~~---------ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD--PR---------AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S--HH---------HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--HH---------HHHHHHHHhc
Confidence 68899999998764 32 5677776664
No 311
>smart00087 PTH Parathyroid hormone.
Probab=67.14 E-value=4.3 Score=24.25 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=12.4
Q ss_pred CHHhHHHHHHHHHHh
Q psy355 2 NEANRGFLLDALNSM 16 (285)
Q Consensus 2 ~~e~~~~L~~al~~~ 16 (285)
+-+||.||++.|..+
T Consensus 19 ~~~R~~WLq~~L~~V 33 (36)
T smart00087 19 SLERREWLRKKLQDV 33 (36)
T ss_pred HHHHHHHHHHHHHhh
Confidence 358999999999765
No 312
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=67.05 E-value=1e+02 Score=28.14 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh-CChHhHHHHHhcC--cHH
Q psy355 77 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR-DNEECLKEFIKRD--GFS 153 (285)
Q Consensus 77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r-~~~~~~~~f~~~~--gi~ 153 (285)
.+...+..+..++-.+.++ . ++.+.+.|.+. ...+...++.-+.+|+. +.......|...= ..+
T Consensus 38 ~~~~~~~~g~~l~~~iL~~-----------~-~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~ 104 (330)
T PF11707_consen 38 SDLSFQSYGLELIRSILQN-----------H-LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLK 104 (330)
T ss_pred cchhHHHHHHHHHHHHHHH-----------H-HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchh
Confidence 3444555555555444432 1 67778888864 46777899999999999 6666666666432 334
Q ss_pred HHHHhhccC-----c--------HHHHHHHHHHHHHHh-cCCchHHHHHHHC-CcHHHHHHhcccCCCCCccHHHHHHHH
Q psy355 154 VLLRCIQSK-----K--------EKLVIKSCFLIACLC-TDNNQVKQVLLSM-GMVEQMCVLIDIEDALDTEMNEHLLSA 218 (285)
Q Consensus 154 ~L~~~L~~~-----~--------~~v~~ka~~~l~~L~-~~~~~~~~~l~~~-g~v~~L~~lL~~~~~~d~~~~e~al~a 218 (285)
.+.+++... . ..+|.....++-.++ .+++..+..+++. +.+..+.+-|..+ +.++....+.+
T Consensus 105 ~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D---~~~~v~~iL~~ 181 (330)
T PF11707_consen 105 SLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD---PPETVILILET 181 (330)
T ss_pred hHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC---CHHHHHHHHHH
Confidence 555655421 1 177776665555444 4567777776654 5678888888887 89999999999
Q ss_pred HHH-HHhcC
Q psy355 219 LAS-LIKDS 226 (285)
Q Consensus 219 L~~-l~~~~ 226 (285)
|.. ++...
T Consensus 182 l~~~Vl~~~ 190 (330)
T PF11707_consen 182 LKDKVLKDS 190 (330)
T ss_pred HHHHhccCC
Confidence 985 55444
No 313
>KOG2085|consensus
Probab=66.55 E-value=49 Score=31.28 Aligned_cols=137 Identities=13% Similarity=0.176 Sum_probs=80.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhccC
Q psy355 84 RAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSK 162 (285)
Q Consensus 84 ~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~ 162 (285)
+-+.++-....+.+.....++. ++-..|..-.+ .-..--+.-|.-+.+-..+ ..+.+ ....+..+.++++|+
T Consensus 281 QLaYcivQfveKd~kl~~~VIr--glLK~WP~tnS----~KEVmFL~ElEEILe~iep~eFqk~-~~PLf~qia~c~sS~ 353 (457)
T KOG2085|consen 281 QLAYCIVQFVEKDPKLTETVIR--GLLKYWPKTNS----SKEVMFLNELEEILEVIEPSEFQKI-MVPLFRQIARCVSSP 353 (457)
T ss_pred ccceeeeeeeccCccccHHHHH--HHHHhcCCCCC----cceeeeHhhHHHHHHhcCHHHHHHH-hHHHHHHHHHHcCCh
Confidence 3445555566666766665543 22222222222 1223344555555554333 22222 245667788899999
Q ss_pred cHHHHHHHHHHHHHHhcCCchHHHHHHHCC---cHHHHHHhcccC----CCCCccHHHHHHHHHHHHHhcChHHHhhccc
Q psy355 163 KEKLVIKSCFLIACLCTDNNQVKQVLLSMG---MVEQMCVLIDIE----DALDTEMNEHLLSALASLIKDSTEAQSLCRL 235 (285)
Q Consensus 163 ~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g---~v~~L~~lL~~~----~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~ 235 (285)
++.|..+|+++..| +....++.++ ++|.+-..|... + +..++..++.+|..++..++...++|-.
T Consensus 354 HFQVAEraL~~wnN------e~i~~Li~~n~~~ilPiiFpaLyr~sk~hW--N~~i~~l~~nvlk~f~emd~~LFeec~~ 425 (457)
T KOG2085|consen 354 HFQVAERALYLWNN------EYIRSLISQNAEVILPIVFPALYRNSKSHW--NQAIHNLILNVLKTFMEMDPKLFEECLA 425 (457)
T ss_pred hHHHHHHHHHHHhh------HHHHHHHHhccceeeehhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999999987654 3333444332 234433333321 2 5678888999999999999988888843
No 314
>KOG2956|consensus
Probab=65.72 E-value=1.3e+02 Score=28.98 Aligned_cols=144 Identities=11% Similarity=0.097 Sum_probs=76.9
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcC--CHHHHHhhhcCCCHHHHHHHH-HHHHHHhhCCHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMG--GLPVLQPLLEGSDPELRWRAA-ETVADIVQNNPFSQ 100 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~G--g~~~Lv~lL~s~~~~vr~~A~-~~lg~~a~nn~~~q 100 (285)
+--.+++|.+.. ++-.+.-||..|...+..- +..|.+.- ++..++..-..+++++...|. .++..+++..|...
T Consensus 331 L~~l~EvL~d~~-~~~~k~laLrvL~~ml~~Q--~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~ 407 (516)
T KOG2956|consen 331 LLLLLEVLSDSE-DEIIKKLALRVLREMLTNQ--PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC 407 (516)
T ss_pred HHHHHHHHccch-hhHHHHHHHHHHHHHHHhc--hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH
Confidence 334455555533 2456788888888887652 22222211 233344433344554444444 45666777777532
Q ss_pred HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc
Q psy355 101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 179 (285)
Q Consensus 101 ~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~ 179 (285)
. ..+..++-+ .+...-..++-.+-.++.+-+.-.-.-+-....|.+++.-.+.+..||+.|+|+|.+++.
T Consensus 408 -I-------~~i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 408 -I-------VNISPLILT-ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -H-------HHHhhHHhc-CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 2 122223322 223333333334445544322211111124567888999999999999999999998864
No 315
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=65.67 E-value=18 Score=35.16 Aligned_cols=112 Identities=9% Similarity=0.075 Sum_probs=73.9
Q ss_pred HHHHHhhhcCC--CHHHHHHHHHHH---HHHhhCCHHHHHHHHhcCcHHHHHHhhc-------cCCCHHHHHHHHHHHHH
Q psy355 67 LPVLQPLLEGS--DPELRWRAAETV---ADIVQNNPFSQNFIIQTDFLNLLLTSIE-------HDSNTTVQVKSLYAVSC 134 (285)
Q Consensus 67 ~~~Lv~lL~s~--~~~vr~~A~~~l---g~~a~nn~~~q~~v~~~g~l~~L~~LL~-------~~~~~~v~~~a~~ALs~ 134 (285)
+..+...|.++ +..+|..+...+ ..+..+-+...-..+...++..+|.++. ...+...|..+--+||.
T Consensus 321 ~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~ 400 (501)
T PF13001_consen 321 LQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGL 400 (501)
T ss_pred HHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHH
Confidence 34444456666 778999998888 7766655444433444444455555552 12467899999999999
Q ss_pred HhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355 135 LVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 135 l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~ 180 (285)
+++..|.... -+.+-+..|...|..++..++...--+++.++..
T Consensus 401 L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 401 LAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 9998887531 1234556666777667778887777777777654
No 316
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=65.41 E-value=1e+02 Score=28.33 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhc--------CcHHHHHHhhccCC------CHHHHHHHHHHHHHHhhCChHhH
Q psy355 78 DPELRWRAAETVADIVQNNPFSQNFIIQT--------DFLNLLLTSIEHDS------NTTVQVKSLYAVSCLVRDNEECL 143 (285)
Q Consensus 78 ~~~vr~~A~~~lg~~a~nn~~~q~~v~~~--------g~l~~L~~LL~~~~------~~~v~~~a~~ALs~l~r~~~~~~ 143 (285)
+.+.+..=-++...+..+++..+..+++. -.+|.|+..+...- +.......+..+.+|+.+..-..
T Consensus 173 S~Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~l 252 (343)
T cd08050 173 SKELQLYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHL 252 (343)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCch
Confidence 45566665566665655666655555543 36788888877421 23333444455555555433333
Q ss_pred HHHHhcCcHHHHHHhhcc----------CcHHHHHHHHHHHHHHhcC
Q psy355 144 KEFIKRDGFSVLLRCIQS----------KKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 144 ~~f~~~~gi~~L~~~L~~----------~~~~v~~ka~~~l~~L~~~ 180 (285)
+..+ +-.+|.++.++-+ ++..+|..|+.+++.+|..
T Consensus 253 e~Yl-h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~ 298 (343)
T cd08050 253 EPYL-HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRK 298 (343)
T ss_pred HHhH-HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 3232 3367777777632 3468999999999998865
No 317
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=64.77 E-value=28 Score=25.11 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=38.9
Q ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc
Q psy355 107 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ 160 (285)
Q Consensus 107 g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~ 160 (285)
..+.|+..++.+..+..+|...+.+|..++..+... + ..|++.+...+.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~---i--~SGW~~if~il~ 65 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN---I--KSGWKVIFSILR 65 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH---H--HhccHHHHHHHH
Confidence 468889999877778899999999999999865433 2 367888888775
No 318
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=64.03 E-value=1.2e+02 Score=27.90 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=32.8
Q ss_pred hcCcHHHHHHhhccCcHHHHHH------------------HHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCc
Q psy355 148 KRDGFSVLLRCIQSKKEKLVIK------------------SCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT 209 (285)
Q Consensus 148 ~~~gi~~L~~~L~~~~~~v~~k------------------a~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~ 209 (285)
..||+..+..+|..-+.....+ -.|.+-+|..-++...+.+++.=--+.|+-.|+.. +.
T Consensus 197 ~~gG~~~~a~ILN~~~~~~~~~il~~L~~~dp~la~~Ir~~mF~Fedl~~ld~~~l~~llrev~~~~L~~ALkga---~~ 273 (338)
T TIGR00207 197 KMGGVRAVAEIINLMDRKTEKTIITSLEEFDPELAEEIKKEMFVFEDIVDLDDRSIQRVLREVDSEDLLLALKGA---EQ 273 (338)
T ss_pred cCChHHHHHHHHHhCCchHHHHHHHHHHHhCHHHHHHHHHHccCHHHHhcCCHHHHHHHHHhCCHHHHHHHHCcC---CH
Confidence 3477777777766544433332 23334444333333333443333334444445554 55
Q ss_pred cHHHHHHHHH
Q psy355 210 EMNEHLLSAL 219 (285)
Q Consensus 210 ~~~e~al~aL 219 (285)
.++++.+..+
T Consensus 274 e~~~~il~nm 283 (338)
T TIGR00207 274 PLREKFLNNM 283 (338)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 319
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=63.31 E-value=71 Score=29.44 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=69.3
Q ss_pred CCHHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC------------HHH------HHHHHHHHHHhhcC-cchHH--
Q psy355 1 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQ------------KDI------CIGALDNLSDYVCS-IDYAN-- 59 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~------------~~~------~~~al~~L~~lv~~-~dna~-- 59 (285)
+|+|=+.|.++.-+.+..+.....+.++..|.....- +.. -...|..+..++.. ++|..
T Consensus 172 LS~Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 172 LSKELQLYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred cCHHHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 5788888888888877656666777788877766520 000 01222222222222 12222
Q ss_pred -HHHHcCCHHHHHhhhcC----------CCHHHHHHHHHHHHHHhhC----CHHHHHHHHhcCcHHHHHHhhcc-CCCHH
Q psy355 60 -DFLKMGGLPVLQPLLEG----------SDPELRWRAAETVADIVQN----NPFSQNFIIQTDFLNLLLTSIEH-DSNTT 123 (285)
Q Consensus 60 -~~~~~Gg~~~Lv~lL~s----------~~~~vr~~A~~~lg~~a~n----n~~~q~~v~~~g~l~~L~~LL~~-~~~~~ 123 (285)
...-.--+|.++.|+-+ .+-.+|..|+.+++.++.. ++..+.. ++..|.+.|.. .....
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~r-----i~~tl~k~l~d~~~~~~ 326 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPR-----ITRTLLKALLDPKKPLT 326 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHH-----HHHHHHHHHcCCCCCcc
Confidence 11112257888877632 2348999999999999853 2222222 23344444432 22334
Q ss_pred HHHHHHHHHHHH
Q psy355 124 VQVKSLYAVSCL 135 (285)
Q Consensus 124 v~~~a~~ALs~l 135 (285)
..--|+..|+.+
T Consensus 327 ~~YGAi~GL~~l 338 (343)
T cd08050 327 THYGAIVGLSAL 338 (343)
T ss_pred hhhHHHHHHHHh
Confidence 455566666554
No 320
>KOG2549|consensus
Probab=62.81 E-value=1.3e+02 Score=29.60 Aligned_cols=121 Identities=18% Similarity=0.186 Sum_probs=67.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCC-------HHHHHHHHHHHHHHhhCChHhHH
Q psy355 72 PLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN-------TTVQVKSLYAVSCLVRDNEECLK 144 (285)
Q Consensus 72 ~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~-------~~v~~~a~~ALs~l~r~~~~~~~ 144 (285)
..+.+.++..|..|+..|.+ ++..|+ .+|.++..+..... ...-...+.-+.++.+ ||...-
T Consensus 214 ~a~~g~~~~~r~eAL~sL~T----DsGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-Np~i~l 282 (576)
T KOG2549|consen 214 EACTGSDEPLRQEALQSLET----DSGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-NPNIFL 282 (576)
T ss_pred HHHhcCCHHHHHHHHHhhcc----CccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-CCccch
Confidence 33334555555555555442 333333 57888888875322 2233334444444444 444322
Q ss_pred HHHhcCcHHHHHHhhcc----------CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC
Q psy355 145 EFIKRDGFSVLLRCIQS----------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE 204 (285)
Q Consensus 145 ~f~~~~gi~~L~~~L~~----------~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~ 204 (285)
.-+-+-.+|.++.|+=+ .+..+|--|+.++..+|....+.-.. ....++..+.+.+...
T Consensus 283 epYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 283 EPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDN 351 (576)
T ss_pred hhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCC
Confidence 22224456666666543 24569999999999999886655555 3345666666666543
No 321
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=62.64 E-value=1.5e+02 Score=28.44 Aligned_cols=74 Identities=16% Similarity=0.107 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhcCc--chHHHHHHcCCHH-HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 39 DICIGALDNLSDYVCSI--DYANDFLKMGGLP-VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~--dna~~~~~~Gg~~-~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
..|+.|...|..++.-+ +....+ +. .|+.+|+|++..-|.-|+-+|..-+...........-....+.|..+
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~-----~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEI-----FQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHH-----HHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 45666666666665543 222222 33 68899999999999999999999887655322111011245566666
Q ss_pred hc
Q psy355 116 IE 117 (285)
Q Consensus 116 L~ 117 (285)
|.
T Consensus 177 L~ 178 (441)
T PF12054_consen 177 LE 178 (441)
T ss_pred Hc
Confidence 66
No 322
>KOG4464|consensus
Probab=62.34 E-value=1.1e+02 Score=29.08 Aligned_cols=83 Identities=11% Similarity=0.240 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC------C-HHHHHHHHHHHHHHhhCChHhHHHHHhc
Q psy355 77 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS------N-TTVQVKSLYAVSCLVRDNEECLKEFIKR 149 (285)
Q Consensus 77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~------~-~~v~~~a~~ALs~l~r~~~~~~~~f~~~ 149 (285)
++..|...|..+|.|++=+.+.+|+.+++......+++.+.... + .-.--+.++-++.+=. ..-.+-+++.
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~--~~Rsql~~~l 186 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALET--DHRSQLIAEL 186 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhH--HHHHHHHHHh
Confidence 34588999999999999999999999999988888887765421 1 1112244555555422 1223446678
Q ss_pred CcHHHHHHhhcc
Q psy355 150 DGFSVLLRCIQS 161 (285)
Q Consensus 150 ~gi~~L~~~L~~ 161 (285)
+|++.+.+.|.+
T Consensus 187 ~Gl~~lt~~led 198 (532)
T KOG4464|consen 187 LGLELLTNWLED 198 (532)
T ss_pred cccHHHHHHhhc
Confidence 999999988864
No 323
>KOG1993|consensus
Probab=62.28 E-value=2e+02 Score=29.82 Aligned_cols=179 Identities=15% Similarity=0.163 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhh-cCcchHHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355 39 DICIGALDNLSDYV-CSIDYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 116 (285)
Q Consensus 39 ~~~~~al~~L~~lv-~~~dna~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL 116 (285)
|..-.|.+.-.+-+ +..|.+.-|... .+|-+- ..+ ...-+|.+.+|+||.=++- .+. .=.+.-+-..++++|
T Consensus 462 DAiYaa~g~~a~~l~~~~dF~~Wl~~~-llpEl~--~~~~~~RiiRRRVa~ilg~Wvsv--q~~-~e~k~l~Y~a~lnLL 535 (978)
T KOG1993|consen 462 DAIYAAFGLAAYELSNILDFDKWLQEA-LLPELA--NDHGNSRIIRRRVAWILGQWVSV--QQK-LELKPLLYCAFLNLL 535 (978)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHh-hCHHhh--hcccchhHHHHHHHHHHhhhhhe--ech-HhHHHHHHHHHHHhc
Confidence 33444444444433 334655554421 122222 223 3456899999999987751 111 112222445578899
Q ss_pred ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh--cCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCc
Q psy355 117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK--RDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 193 (285)
Q Consensus 117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~--~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~ 193 (285)
+...|..|+-.++.++.-++.+.....++|.. .+.+..+..+++. +..+.|.....+++.+...-.+..+-... .+
T Consensus 536 ~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~-~i 614 (978)
T KOG1993|consen 536 QDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYAS-TI 614 (978)
T ss_pred CccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH-HH
Confidence 87557889999999999999886666666653 3455566666665 35667777788888776543222211110 11
Q ss_pred HHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 194 v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
+. +..+|=..++..+-+|-..+.+|.+++..
T Consensus 615 vq-~lp~LWe~s~~e~lLr~alL~~L~~lV~a 645 (978)
T KOG1993|consen 615 VQ-YLPLLWEESEEEPLLRCALLATLRNLVNA 645 (978)
T ss_pred HH-HHHHHHhhhccCcHHHHHHHHHHHHHHHH
Confidence 11 11222111223555677777777777643
No 324
>KOG0301|consensus
Probab=61.68 E-value=1.9e+02 Score=29.28 Aligned_cols=149 Identities=16% Similarity=0.108 Sum_probs=80.0
Q ss_pred hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH---hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC
Q psy355 74 LEGSDPELRWRAAETVADIVQNNPFSQNFII---QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD 150 (285)
Q Consensus 74 L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~---~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~ 150 (285)
+..-+++++.+|+.+|--++.+.+..-..+- ....+..++..+.. ++..+--++..|+|+..+ +...+-|...
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~--~~an~ll~vR~L~N~f~~-~~g~~~~~s~- 628 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNA--DPANQLLVVRCLANLFSN-PAGRELFMSR- 628 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhccccc--chhHHHHHHHHHHHhccC-HHHHHHHHHH-
Confidence 3345778899999999988877554333222 22366667766662 456778889999998776 6666666543
Q ss_pred cHHHHHHh----hccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC--CCCCccHHHHHHHHHHHHHh
Q psy355 151 GFSVLLRC----IQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE--DALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 151 gi~~L~~~----L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~--~~~d~~~~e~al~aL~~l~~ 224 (285)
...+... =..++..++...+.+.-|+.-- +.+.-.+.|..+.+...+... +..|.+-.-.++.||.+|+.
T Consensus 629 -~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 629 -LESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred -HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 2222222 1223455665554444443211 011111134444444443332 01122233356777777777
Q ss_pred cChHHH
Q psy355 225 DSTEAQ 230 (285)
Q Consensus 225 ~~~~~~ 230 (285)
..+...
T Consensus 705 ~~~~~~ 710 (745)
T KOG0301|consen 705 VDASVI 710 (745)
T ss_pred ccHHHH
Confidence 775433
No 325
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=61.66 E-value=1.4e+02 Score=27.70 Aligned_cols=120 Identities=13% Similarity=0.210 Sum_probs=81.9
Q ss_pred HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhc-CcHHHHHHh-hcc----C-cHHHHHHHHH
Q psy355 100 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKR-DGFSVLLRC-IQS----K-KEKLVIKSCF 172 (285)
Q Consensus 100 q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~-~gi~~L~~~-L~~----~-~~~v~~ka~~ 172 (285)
-+++++..++..|.++-..+.++++|..++..+++++...... ++.+ ....++.++ ++. . ...+..+-..
T Consensus 2 lEyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p---lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~ 78 (353)
T PF10257_consen 2 LEYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP---LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVE 78 (353)
T ss_pred hHHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc---cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHH
Confidence 4678889999999999988888999999999999998753322 4433 344566666 442 1 4556666666
Q ss_pred HHHHHhc---CCchHHHHHHHCC--------------------------cHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 173 LIACLCT---DNNQVKQVLLSMG--------------------------MVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 173 ~l~~L~~---~~~~~~~~l~~~g--------------------------~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
++..+|. .+|.....+.+.+ ++..|+.++.+ .-.+-..|-.+|..++
T Consensus 79 lL~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~----eg~ig~~Are~LLll~ 154 (353)
T PF10257_consen 79 LLNTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHS----EGRIGDFAREGLLLLM 154 (353)
T ss_pred HHHHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCc----CcHHHHHHHHHHHHHH
Confidence 6666664 4666666555433 34567777765 3567777777877777
Q ss_pred hcC
Q psy355 224 KDS 226 (285)
Q Consensus 224 ~~~ 226 (285)
.-.
T Consensus 155 ~l~ 157 (353)
T PF10257_consen 155 SLA 157 (353)
T ss_pred hCC
Confidence 666
No 326
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=61.59 E-value=38 Score=25.64 Aligned_cols=71 Identities=17% Similarity=0.122 Sum_probs=51.1
Q ss_pred HHHHHHHHHhccC--CCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC--CCHHHHHHHHHHHHHHhhCCH
Q psy355 23 ELEKIIKTLKENQ--DQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNP 97 (285)
Q Consensus 23 ~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s--~~~~vr~~A~~~lg~~a~nn~ 97 (285)
.|...-.++.+.. .+..+|..++..+.+++.- ... +-..+.|.+..+|++ ..+++|..|+.+...+.+.=+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~---~g~-~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKL---MGK-HISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCC
Confidence 3444555666666 3468899999999999873 222 223457888888886 788999999999998887533
No 327
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=61.15 E-value=41 Score=30.76 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcC--CHHHHHhhhcCC---CHHHHHHHHHHHHHHhhCCHHHHHHHHh------cC
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMG--GLPVLQPLLEGS---DPELRWRAAETVADIVQNNPFSQNFIIQ------TD 107 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~G--g~~~Lv~lL~s~---~~~vr~~A~~~lg~~a~nn~~~q~~v~~------~g 107 (285)
..|+-|+-.+.+...+-+....|...+ .+.-|+.++..+ ...+|..|+.+|..++...+.+.+.+-. .|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 456677777777665666677777777 788889988753 4689999999999999988877764432 36
Q ss_pred cHHHHHHh
Q psy355 108 FLNLLLTS 115 (285)
Q Consensus 108 ~l~~L~~L 115 (285)
+++.+++-
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 77766653
No 328
>KOG1949|consensus
Probab=60.97 E-value=76 Score=32.29 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhh--cCcch-HHHH--HHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh---cCcHH
Q psy355 39 DICIGALDNLSDYV--CSIDY-ANDF--LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ---TDFLN 110 (285)
Q Consensus 39 ~~~~~al~~L~~lv--~~~dn-a~~~--~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~---~g~l~ 110 (285)
+.+..|+..+-++. .+.|. +.++ .--.-+..+..||.++.|.||.-|..-+..+..- ....+=. ...+.
T Consensus 189 ~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---fWe~iP~~i~~~ll~ 265 (1005)
T KOG1949|consen 189 EVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK---FWEMIPPTILIDLLK 265 (1005)
T ss_pred hhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HHHHcCHHHHHHHHH
Confidence 56667777776663 33332 2222 2224577889999999999999988777666531 1211111 12333
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355 111 LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC 178 (285)
Q Consensus 111 ~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~ 178 (285)
.+..-+..++...||....-.|--|.. +|..--.| .-|+|.+-..|.++..+||..+.-+|.-+-
T Consensus 266 kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~~l--e~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 266 KITDELAFDTSSDVRCSVFKGLPMILD-NPLSHPLL--EQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHhhhccchheehhHhcCcHHHHc-CccchhHH--HHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 344444455666788777777766654 45443323 246777778888889999998888777663
No 329
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=60.42 E-value=1.6e+02 Score=28.23 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=61.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHH-HHHhhhc-CCCHHHHHHHH
Q psy355 9 LLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLP-VLQPLLE-GSDPELRWRAA 86 (285)
Q Consensus 9 L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~-~Lv~lL~-s~~~~vr~~A~ 86 (285)
|.++++.+..+.+..+=.+.+.|-.+..+.+.+..++.-|..++..-+.. .|+.. .+...+. ++.++.-..-+
T Consensus 14 l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~-----~~~~R~~fF~~I~~~~~~~d~~~~l 88 (464)
T PF11864_consen 14 LCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSS-----SGLMRAEFFRDISDPSNDDDFDLRL 88 (464)
T ss_pred HHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccc-----cHHHHHHHHHHHhcCCCchhHHHHH
Confidence 34555555688888888899999999888899999999999998775531 12221 2222233 33443333334
Q ss_pred HHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355 87 ETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 117 (285)
Q Consensus 87 ~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~ 117 (285)
.+|-.++.|..... ..+.+..|.|..-+.
T Consensus 89 ~aL~~LT~~Grdi~--~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 89 EALIALTDNGRDID--FFEYEIGPFLLSWLE 117 (464)
T ss_pred HHHHHHHcCCcCch--hcccchHHHHHHHHH
Confidence 44444444544442 245566666665554
No 330
>KOG0392|consensus
Probab=60.17 E-value=30 Score=37.18 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=62.0
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
-+|.+..++.|.++.+|..|+++||.++.....-....+ +..++.++....+..=|.-|.-.+..+++.-......
T Consensus 817 ~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v----~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~ 892 (1549)
T KOG0392|consen 817 LLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATV----INGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVP 892 (1549)
T ss_pred hhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccc
Confidence 356777888999999999999999999864333222222 2333334443112222333334444443321111000
Q ss_pred HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355 146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC 178 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~ 178 (285)
+. .=.+++|.+.++.....+|..|..+++.+.
T Consensus 893 ~~-~Llv~pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 893 YN-PLLVVPLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred cc-eeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 00 113567778888888888888888887775
No 331
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=60.15 E-value=20 Score=32.21 Aligned_cols=56 Identities=20% Similarity=0.089 Sum_probs=42.0
Q ss_pred HcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH-------HH-------HHHHHhcCcHHHHHHhhcc
Q psy355 63 KMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP-------FS-------QNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 63 ~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~-------~~-------q~~v~~~g~l~~L~~LL~~ 118 (285)
+..-+..++.-|.+++...|..|+++|.-+++|.- .+ -..+.+.|++++|+.+|..
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33445677777888899999999999999998832 12 2234567999999999985
No 332
>KOG0915|consensus
Probab=59.44 E-value=43 Score=36.72 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC
Q psy355 125 QVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE 204 (285)
Q Consensus 125 ~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~ 204 (285)
|+-|++-++.|+...-...+.+. .-.+|.|.+.=-+++.++|..-...-..|+.......+... ..++.-|+.-|.+.
T Consensus 974 k~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~k 1051 (1702)
T KOG0915|consen 974 KKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSK 1051 (1702)
T ss_pred ccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccch
Confidence 44555555555544333333332 23456666666678899998877777777776555555444 24677777777776
Q ss_pred CCCCccHHHHHHHHHHHHHhcChH
Q psy355 205 DALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 205 ~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
.-.+||.+..||..|+++.|.
T Consensus 1052 ---ewRVReasclAL~dLl~g~~~ 1072 (1702)
T KOG0915|consen 1052 ---EWRVREASCLALADLLQGRPF 1072 (1702)
T ss_pred ---hHHHHHHHHHHHHHHHcCCCh
Confidence 889999999999999998764
No 333
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=58.94 E-value=2.2e+02 Score=29.31 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=52.1
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCC
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN 139 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~ 139 (285)
++.+++.++++.--+|.+||..|+.+.- ...+..+-..+.....+++.+ .+..|+..|+.|++.++++.
T Consensus 462 v~hv~P~f~s~ygfL~Srace~is~~ee---Dfkd~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 462 VNHVIPAFRSNYGFLKSRACEFISTIEE---DFKDNGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHhhHhhcCcccchHHHHHHHHHHHHH---hcccchHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhch
Confidence 5566667788888899999999999843 233334444566667777776 56789999999999999976
No 334
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=58.55 E-value=58 Score=31.69 Aligned_cols=82 Identities=23% Similarity=0.263 Sum_probs=60.7
Q ss_pred hHHHHHHcCCHHHHH-h---hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHH
Q psy355 57 YANDFLKMGGLPVLQ-P---LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 132 (285)
Q Consensus 57 na~~~~~~Gg~~~Lv-~---lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~AL 132 (285)
.-..++-.||||.+- . =..+.+...|..|-.+||.+++..|..= .-+.+.+.-|.+-|.. +.+.++...-.||
T Consensus 362 ~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL~~-~~~evr~sIqeAL 438 (501)
T PF13001_consen 362 LLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSLED-ESPEVRVSIQEAL 438 (501)
T ss_pred HHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccc--cccHHHHHHHHHHhhC-cchHHHHHHHHHH
Confidence 344567788888772 0 1235688999999999999999988631 1345677778877764 5679999999999
Q ss_pred HHHhhCChH
Q psy355 133 SCLVRDNEE 141 (285)
Q Consensus 133 s~l~r~~~~ 141 (285)
|+++.....
T Consensus 439 ssl~~af~~ 447 (501)
T PF13001_consen 439 SSLAPAFKD 447 (501)
T ss_pred HHHHHHHhc
Confidence 999876544
No 335
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=58.51 E-value=16 Score=28.50 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=34.1
Q ss_pred CCHHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q psy355 1 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLS 49 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~ 49 (285)
||+|.+-||++-|+....+..+--++.++++.+..-+.++...|+++-.
T Consensus 91 mS~~EYM~lKkqLae~il~~s~~~~e~v~v~a~a~v~~eeAr~aleeag 139 (153)
T COG4008 91 MSPEEYMELKKQLAEYILGHSEPPVEEVEVLADAFVTPEEAREALEEAG 139 (153)
T ss_pred CCHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHhcCCHHHHHHHHHHcC
Confidence 7889999999888887655555556667777766666666555555433
No 336
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=58.48 E-value=16 Score=20.29 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhCChHhHH
Q psy355 123 TVQVKSLYAVSCLVRDNEECLK 144 (285)
Q Consensus 123 ~v~~~a~~ALs~l~r~~~~~~~ 144 (285)
.+|..|+++|+++ +++.+..
T Consensus 2 ~vR~~aa~aLg~~--~~~~a~~ 21 (30)
T smart00567 2 LVRHEAAFALGQL--GDEEAVP 21 (30)
T ss_pred HHHHHHHHHHHHc--CCHhHHH
Confidence 5899999999997 4555443
No 337
>KOG1525|consensus
Probab=58.41 E-value=29 Score=37.62 Aligned_cols=149 Identities=16% Similarity=0.231 Sum_probs=90.2
Q ss_pred cCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH
Q psy355 64 MGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL 143 (285)
Q Consensus 64 ~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~ 143 (285)
.|++|.|-.=|.+++..+|..|...+|.+.+.... +-.=-.......++.-+. +.++.||.+++-.++.+..++|...
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~-~l~~~~~~~~~~fl~r~~-D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS-QLSETYDDLWSAFLGRFN-DISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh-hhcccchHHHHHHHHHhc-cCChhhhhhHHHHhHHHHhcCchhh
Confidence 57788888888899999999999999999875443 322001123444444444 4678999999999999888877755
Q ss_pred HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 144 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 144 ~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
.+.. +-..++ ..+.|++++....-++.-. . -....-.++.. .+..+..-+... ...+|..|+..|..+-
T Consensus 336 ~~~~----~~~~l~-~~~~D~~~rir~~v~i~~~-~-v~~~~l~~~~~-ll~~~~eR~rDK---k~~VR~~Am~~LaqlY 404 (1266)
T KOG1525|consen 336 KAST----ILLALR-ERDLDEDVRVRTQVVIVAC-D-VMKFKLVYIPL-LLKLVAERLRDK---KIKVRKQAMNGLAQLY 404 (1266)
T ss_pred hHHH----HHHHHH-hhcCChhhhheeeEEEEEe-e-hhHhhhhhhHH-HHHHHHHHHhhh---hHHHHHHHHHHHHHHH
Confidence 4332 111122 2233444444332221111 0 01111122222 555555666666 7889999999998888
Q ss_pred hc
Q psy355 224 KD 225 (285)
Q Consensus 224 ~~ 225 (285)
++
T Consensus 405 k~ 406 (1266)
T KOG1525|consen 405 KN 406 (1266)
T ss_pred HH
Confidence 75
No 338
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=58.38 E-value=30 Score=26.44 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=34.0
Q ss_pred cHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHC
Q psy355 151 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 191 (285)
Q Consensus 151 gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~ 191 (285)
|++.|++-|.+++.+|...|.-++...|..+ ...+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHc
Confidence 7899999999999999999999999998876 556666553
No 339
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=57.67 E-value=74 Score=27.64 Aligned_cols=90 Identities=12% Similarity=0.273 Sum_probs=55.7
Q ss_pred hHHHHHHcCCHH-HHHhhhcCCCHHHHHHHHHHHHHHhh--------------------------CCHHHHHHHHh---c
Q psy355 57 YANDFLKMGGLP-VLQPLLEGSDPELRWRAAETVADIVQ--------------------------NNPFSQNFIIQ---T 106 (285)
Q Consensus 57 na~~~~~~Gg~~-~Lv~lL~s~~~~vr~~A~~~lg~~a~--------------------------nn~~~q~~v~~---~ 106 (285)
+......+..+. .++.++.++++.||..|.+.+..++. |+|.....-++ .
T Consensus 34 ~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~ 113 (239)
T PF11935_consen 34 DEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEAN 113 (239)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHH
Confidence 333444444453 56667888888888888888877642 22222221222 2
Q ss_pred CcHHHHHHhhccCC-CHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 107 DFLNLLLTSIEHDS-NTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 107 g~l~~L~~LL~~~~-~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
+.+..|+..+..+. +..+-...+.+|+.|++.-|.-...+
T Consensus 114 ~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~I 154 (239)
T PF11935_consen 114 GLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRI 154 (239)
T ss_dssp HHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 57788888888755 56777788889999998766654444
No 340
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=56.69 E-value=1.2e+02 Score=25.43 Aligned_cols=80 Identities=11% Similarity=0.208 Sum_probs=53.1
Q ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC-ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHH
Q psy355 107 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD-NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK 185 (285)
Q Consensus 107 g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~-~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~ 185 (285)
-.+|.+..=|.. ++.-.+--|...+.-++.. .....-.++ --.+.+|.+.|.+.+..+...+..+|..|+...+-+-
T Consensus 38 ~~Lpif~dGL~E-t~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRE-TEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhc-cCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 356666666654 3344566677777777665 333333333 3456778888999999999999999999977755433
Q ss_pred HHH
Q psy355 186 QVL 188 (285)
Q Consensus 186 ~~l 188 (285)
..+
T Consensus 116 ~aL 118 (183)
T PF10274_consen 116 EAL 118 (183)
T ss_pred HHH
Confidence 333
No 341
>KOG1832|consensus
Probab=56.42 E-value=81 Score=33.03 Aligned_cols=153 Identities=11% Similarity=0.133 Sum_probs=79.8
Q ss_pred HHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh---hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355 42 IGALDNLSDYVCSIDYANDFLKMGGLPVLQPL---LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 42 ~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l---L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~ 118 (285)
+..|.-|.++++- -.-|+..|.=..++-+ =+-.+..+-..+...|+.++..|.. ...+++.|++..|+..-+.
T Consensus 330 ~q~l~~lgey~e~---lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kf-a~~fv~~~gi~kll~vpr~ 405 (1516)
T KOG1832|consen 330 IQCLEILGEYVEV---LPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKF-AAMFVERRGILKLLAVPRV 405 (1516)
T ss_pred HHHHHHHHhHHHH---HHHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhhHH-HHHHHHhhhhHHHhcCCCc
Confidence 3455666666643 2467776643332222 2235566777889999999988776 5567788888777766553
Q ss_pred CCCHHHHHHHHHHHHHHhhCChHhHHHHHh------cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCC
Q psy355 119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIK------RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 192 (285)
Q Consensus 119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~------~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g 192 (285)
+..-.-...++|.||.+ ....+.++. ...+..-+.+|..+...-+..++.+++. |-....+...+-...
T Consensus 406 s~~~~g~s~cly~~~~~----q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~-~f~frail~~fd~~d 480 (1516)
T KOG1832|consen 406 SETFYGLSSCLYTIGSL----QGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAA-AFVFRAILDAFDAQD 480 (1516)
T ss_pred hhhhhhHHHHHHHHhhh----hhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHH-HHHHHHHHHHHhhhh
Confidence 21112234566666653 222333332 1233445667776644444443332221 111122333444445
Q ss_pred cHHHHHHhccc
Q psy355 193 MVEQMCVLIDI 203 (285)
Q Consensus 193 ~v~~L~~lL~~ 203 (285)
.+..|+++|+.
T Consensus 481 ~l~~l~~~~~~ 491 (1516)
T KOG1832|consen 481 SLQKLLAILKD 491 (1516)
T ss_pred HHHHHHHHHHH
Confidence 56666665543
No 342
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=56.32 E-value=76 Score=23.82 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=48.5
Q ss_pred HHHHHHHHhc--cCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC--CCHHHHHHHHHHHHHHhhCCH
Q psy355 24 LEKIIKTLKE--NQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNP 97 (285)
Q Consensus 24 mk~~l~~l~~--~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s--~~~~vr~~A~~~lg~~a~nn~ 97 (285)
|...-..+.+ +..+..+|..++..+.++++-....- ....|.+..+|++ ..++++..|+.+.....++=+
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i----~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHI----SSARPQIMACLQSALEIPELREEALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCC
Confidence 3334444555 33456899999999999987322111 2347888888886 677999999999998887543
No 343
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=54.13 E-value=1.7e+02 Score=28.41 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=71.6
Q ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHH-hhCChHhHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHHHhcC----
Q psy355 107 DFLNLLLTSIEHDSNTTVQVKSLYAVSCL-VRDNEECLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIACLCTD---- 180 (285)
Q Consensus 107 g~l~~L~~LL~~~~~~~v~~~a~~ALs~l-~r~~~~~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~L~~~---- 180 (285)
+.++.+++-+.. +.+---.+--|+.= ..+.....+.+.+.+-++.|+..|... +..++..|+.+|..+.+-
T Consensus 21 ~~v~~llkHI~~---~~ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~ 97 (475)
T PF04499_consen 21 NFVDNLLKHIDT---PAIMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNA 97 (475)
T ss_pred cHHHHHHHhcCC---cHHHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 566666666653 23333333333300 011222344445688999999999853 688999999999988642
Q ss_pred ---------CchHHHHHHHCCcHHHHHHhccc-CCCCCccHHHHHHHHHHHHHhcC
Q psy355 181 ---------NNQVKQVLLSMGMVEQMCVLIDI-EDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 181 ---------~~~~~~~l~~~g~v~~L~~lL~~-~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
.....+.+++...|..|+..+-. . ......+++..+..+++.+
T Consensus 98 ~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~---~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 98 PQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQ---GGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccCCCccHHHHHHhChHHHHHHHHHHhcCC---CcchHHHHHHHHHHHHHhc
Confidence 13567778888888877766553 3 3455667777777777655
No 344
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=53.86 E-value=60 Score=23.34 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=41.0
Q ss_pred HHHHHhhh-cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc---CCCHHHHHHHHHHH
Q psy355 67 LPVLQPLL-EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH---DSNTTVQVKSLYAV 132 (285)
Q Consensus 67 ~~~Lv~lL-~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~---~~~~~v~~~a~~AL 132 (285)
+.|+..++ .+++.++|...+.+|..+++++.. -++.| .++++..+.. +.++.+...|...+
T Consensus 19 L~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~----~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 19 LKPFEYIMSNNPSIDVRELILECILQILQSRGE----NIKSG-WKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH----HHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 56777764 457999999999999999987552 33555 6666666653 33455655554443
No 345
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=53.85 E-value=35 Score=21.54 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=24.4
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH
Q psy355 69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 103 (285)
Q Consensus 69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v 103 (285)
+++++|.++++..|.+-+.+|+++.+=+|.-++.+
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~i 45 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQKI 45 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHhh
Confidence 56788988889999999999999998777655543
No 346
>KOG2933|consensus
Probab=53.38 E-value=1.7e+02 Score=26.69 Aligned_cols=138 Identities=7% Similarity=0.126 Sum_probs=83.7
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
+.-.+..|.+.+-.....++..|-.++.-+++.-...+. ..+..+++-+++ ....|-+.||-+++.|..........
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKN-lRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKN-LRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 445566777888888888888888877655543333222 255556666665 45689999999999987765554433
Q ss_pred HhcCcHHHHHHhh-cc---CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHH
Q psy355 147 IKRDGFSVLLRCI-QS---KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221 (285)
Q Consensus 147 ~~~~gi~~L~~~L-~~---~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~ 221 (285)
-+..++..| .. ++.=++..|.-+|..++..-... -+++.|...+.+. .+.++..+..+..+
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~---n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHS---NPRVRAKAALCFSR 231 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhh---chhhhhhhhccccc
Confidence 233333333 22 23456777778888877652211 1445555556665 66666666555443
No 347
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=53.11 E-value=63 Score=36.47 Aligned_cols=57 Identities=11% Similarity=0.223 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHhcC---cHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355 80 ELRWRAAETVADIVQNNPFSQNFIIQTD---FLNLLLTSIEHDSNTTVQVKSLYAVSCLV 136 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g---~l~~L~~LL~~~~~~~v~~~a~~ALs~l~ 136 (285)
..-..-+++|+.++++++..+.++.+.. .++.|..|+....+..+|...+.+|++++
T Consensus 579 ~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~ 638 (1691)
T PF11894_consen 579 EMLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALA 638 (1691)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 4457788999999999999999998764 79999999998777899999999999995
No 348
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=52.64 E-value=1.2e+02 Score=24.40 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhhcCcc----------hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC-
Q psy355 39 DICIGALDNLSDYVCSID----------YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD- 107 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~d----------na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g- 107 (285)
..+.-+|+-+....+... .-..+++...++.|++.+.++++.+-..+++++.++...-- ...-.+.+
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~--~~Lk~ele~ 114 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR--SHLKLELEV 114 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 456777777777665421 22234556677888887777889999999999999995421 11122233
Q ss_pred cHHHHHH-hhccCC-CHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355 108 FLNLLLT-SIEHDS-NTTVQVKSLYAVSCLVRDNEECLKEFI 147 (285)
Q Consensus 108 ~l~~L~~-LL~~~~-~~~v~~~a~~ALs~l~r~~~~~~~~f~ 147 (285)
.++.++. ++.++. +...|.-++.++..+++...-..+-|.
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~ 156 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFV 156 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 3344444 666543 346788899999999986444444444
No 349
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=51.76 E-value=81 Score=22.06 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhh-cCCCHHHHHHHHHHHH
Q psy355 20 VGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL-EGSDPELRWRAAETVA 90 (285)
Q Consensus 20 ~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL-~s~~~~vr~~A~~~lg 90 (285)
++.+.++.+..-.+ ..+.+..+.+|..|..+- .-.+..+...+...|.-| +|+++.|+..|..++.
T Consensus 3 ev~r~~~~l~~~~~-~~~~~~~~~~L~~L~~~~----it~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~ 69 (76)
T cd00183 3 EVLRAKKKLEKKDS-NEEVSRLLDLLRLLKKLP----LTVEILKETRIGKKVNSLRKHSNEKIRKLAKALIK 69 (76)
T ss_pred HHHHHHHHhhcccc-CCCHHHHHHHHHHHhcCC----CCHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34444444443333 134566777787777754 223344445566667655 5788999998887765
No 350
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=51.49 E-value=1.4e+02 Score=24.90 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=51.5
Q ss_pred CcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 150 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 150 ~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
.-++.+...|...+.-.+--|...+..|+.. ..+-.--++ -..|.+|-.-|.+. ++++...+|.+|..|+..++
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr---~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR---DPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhhh
Confidence 3567777888777666666666667777665 322222222 24667777888888 99999999999999977664
No 351
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=51.37 E-value=31 Score=28.85 Aligned_cols=77 Identities=16% Similarity=0.303 Sum_probs=49.5
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
.+.+...+.|+++-+|..|+..+......... + ..+..+..++. +++.-||....|+|..+...+|.....|
T Consensus 122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~--~-----~~l~~~~~~~~-d~~~~vq~ai~w~L~~~~~~~~~~v~~~ 193 (213)
T PF08713_consen 122 LELLEKWAKSDNEWVRRAAIVMLLRYIRKEDF--D-----ELLEIIEALLK-DEEYYVQKAIGWALREIGKKDPDEVLEF 193 (213)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHCTTTHGGGCHH--H-----HHHHHHHHCTT-GS-HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHhcCH--H-----HHHHHHHHHcC-CchHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 34445567788888888777666555543110 0 12223333344 4677999999999999999999999999
Q ss_pred HhcCc
Q psy355 147 IKRDG 151 (285)
Q Consensus 147 ~~~~g 151 (285)
+..++
T Consensus 194 l~~~~ 198 (213)
T PF08713_consen 194 LQKNS 198 (213)
T ss_dssp HHHS-
T ss_pred HHHCc
Confidence 87654
No 352
>KOG3377|consensus
Probab=51.20 E-value=51 Score=26.19 Aligned_cols=109 Identities=14% Similarity=0.245 Sum_probs=58.1
Q ss_pred CCHHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccC--------CCHHHHHHHHHHHHHhhcC-cchHHHHHH--cCCHH-
Q psy355 1 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQ--------DQKDICIGALDNLSDYVCS-IDYANDFLK--MGGLP- 68 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~--------~~~~~~~~al~~L~~lv~~-~dna~~~~~--~Gg~~- 68 (285)
|.|.-|+|+++|..++. ++.+ +++|..+...- ++...-..+.....+.+.. +-+|..++. +|.|.
T Consensus 7 m~E~~r~kveeav~~m~-~~L~--r~hir~mQ~~mfrCaa~Ccdd~r~~~e~v~~ci~~c~~pl~~aQ~~~~~El~~FQ~ 83 (143)
T KOG3377|consen 7 MLERQRRKVEEAVDEMQ-SDLD--RDHIRKMQQAMFRCAAECCDDSRASEEAVNCCIECCVPPLTKAQQYVQSELGKFQD 83 (143)
T ss_pred HHHHHHHHHHHHHHHHH-HHHh--HHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 45788999999999994 4444 66666654433 1122334445555555444 556777653 45553
Q ss_pred HHHhhhcCCCHHH---------HHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355 69 VLQPLLEGSDPEL---------RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 117 (285)
Q Consensus 69 ~Lv~lL~s~~~~v---------r~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~ 117 (285)
.|-+++-.-+... +..+..-+..++.+.- -. .-|.||.+++-.+
T Consensus 84 RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cv--d~---~v~liP~m~k~MK 136 (143)
T KOG3377|consen 84 RLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCV--DD---HVGLIPTMVKRMK 136 (143)
T ss_pred HHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHH--HH---HHhhhHHHHHHHH
Confidence 5555554322221 3445555555552210 11 1367777776544
No 353
>PRK14707 hypothetical protein; Provisional
Probab=50.96 E-value=4.7e+02 Score=30.63 Aligned_cols=176 Identities=16% Similarity=0.132 Sum_probs=109.3
Q ss_pred HHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCC
Q psy355 43 GALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN 121 (285)
Q Consensus 43 ~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~ 121 (285)
.|......+.++.+....+-..| +...++-|+ =|+..+...|+..|+.-....+...+.+ +.-++...++-|+.=++
T Consensus 310 Aa~~la~rl~~d~~l~~~~~~~~-~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~~lNalsKWp~ 387 (2710)
T PRK14707 310 AAIALAERLADDPELCKALNARG-LSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSSVLNALSKWPD 387 (2710)
T ss_pred HHHHHHHHHhccHhhhhccchHH-HHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHHHHhhhhcCCC
Confidence 33333444555544443333333 444444443 3777777777777766555566655443 44567777777776566
Q ss_pred HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHh
Q psy355 122 TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL 200 (285)
Q Consensus 122 ~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~l 200 (285)
..+...|..+|+.=+-+.+.-.+.+ +.-|+.-+++.|+. ++..+-..++..+.--+..+++.++.+--.++...|-.+
T Consensus 388 ~~~c~~aa~~LA~~l~~d~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~Lnal 466 (2710)
T PRK14707 388 TPVCAAAASALAEHVVDDLELRKGL-DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDAL 466 (2710)
T ss_pred chHHHHHHHHHHHHhccChhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHh
Confidence 6788888888887666666655544 56678888888876 677777777777776667777888777666666555444
Q ss_pred cccCCCCCccHHHHHHHHHHHHHh
Q psy355 201 IDIEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 201 L~~~~~~d~~~~e~al~aL~~l~~ 224 (285)
=+=+ |..+-..+...|..=+.
T Consensus 467 SKWP---d~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 467 SKWP---DTPICGQTASALAARLA 487 (2710)
T ss_pred hcCC---CChhHHHHHHHHHHHhc
Confidence 4445 65665555555544443
No 354
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=50.12 E-value=1.1e+02 Score=23.00 Aligned_cols=69 Identities=12% Similarity=0.197 Sum_probs=46.8
Q ss_pred CcHHHHHHhhcc---CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcC
Q psy355 107 DFLNLLLTSIEH---DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 107 g~l~~L~~LL~~---~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~ 180 (285)
|.+..+-+.+.+ ..+...|+.++.+|+.+++-.......+ .|-+..+|++. .+.++..|+.+...++..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~-----~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSA-----RPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 556666655554 4667899999999999998555544433 45566666653 457888887777776654
No 355
>KOG2149|consensus
Probab=50.07 E-value=1.5e+02 Score=27.89 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=79.5
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHH
Q psy355 108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQ 186 (285)
Q Consensus 108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~ 186 (285)
-+.-|+..+.+ .+..+|..|++-|-.+..++|.... .--..+++.+..+..+.+..+|...-.++-.+... .+....
T Consensus 59 tlkeLl~qlkH-hNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKH-HNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcC-chHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 45567777887 6789999999999999888766543 33356778888888778888888777666664432 222222
Q ss_pred HHHHCCcH-HHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355 187 VLLSMGMV-EQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230 (285)
Q Consensus 187 ~l~~~g~v-~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~ 230 (285)
.++ +++ +.+-..+..- .+.+|+-++..|.-++..+|+.+
T Consensus 137 p~~--~l~~~yi~~AMThi---t~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 137 PMV--SLLMPYISSAMTHI---TPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred chH--HHHHHHHHHHHhhc---cHHHHHhhHHHHHHHHHHcChHH
Confidence 222 222 3333334444 78999999999999999997543
No 356
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=49.71 E-value=1.5e+02 Score=24.57 Aligned_cols=88 Identities=18% Similarity=0.156 Sum_probs=53.6
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH--HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHh-hCChHhHH
Q psy355 68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI--IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV-RDNEECLK 144 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v--~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~-r~~~~~~~ 144 (285)
|.|+.||+...+. .....+||.++.. +...+ ...|..+-|.+.+-+.. ..--.+|.+-..++. .-......
T Consensus 6 plLIsCL~~q~~k--~s~~KiL~~iVs~---Va~~v~~~~~~~W~eL~d~Ils~~-~~e~~kA~~IF~~L~~~l~~efl~ 79 (174)
T PF04510_consen 6 PLLISCLTMQETK--ESDFKILRRIVSH---VAYEVFDLQEGGWDELSDCILSLS-ENEPVKAFHIFICLPMPLYGEFLI 79 (174)
T ss_pred HHHHHHHHhhccc--HhHHHHHHHHHHH---HHHHHHhcCCCCchhHHHHHHHhh-ccchHHHHHHHHhCCchhhhhHHH
Confidence 5677898864432 3445666666632 22223 46788888888877522 233478888888886 44444455
Q ss_pred HHHhcCcHHHHHHhhccC
Q psy355 145 EFIKRDGFSVLLRCIQSK 162 (285)
Q Consensus 145 ~f~~~~gi~~L~~~L~~~ 162 (285)
.|++. .++.+.+.|.++
T Consensus 80 ~~~~~-L~~~~~~~L~~p 96 (174)
T PF04510_consen 80 PFMEN-LLPEISKVLLPP 96 (174)
T ss_pred HHHHH-HHHHHHHHcCCc
Confidence 55543 666666666655
No 357
>KOG3533|consensus
Probab=49.28 E-value=1.6e+02 Score=32.41 Aligned_cols=136 Identities=17% Similarity=0.217 Sum_probs=80.8
Q ss_pred HHHHHHcCCHHHHHhhhcCCCH--------HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHH
Q psy355 58 ANDFLKMGGLPVLQPLLEGSDP--------ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSL 129 (285)
Q Consensus 58 a~~~~~~Gg~~~Lv~lL~s~~~--------~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~ 129 (285)
.+-+..+|+..+++.+|+-|.. ++-..|-..|-|.|.+|+..|..+.+ -+.++-.. .+-. +
T Consensus 1228 QrLLkNmg~h~VvLdllqiPydkk~D~~M~elm~laHeFLqnFC~gN~qNQ~lLhk------hi~lfl~p---G~LE--a 1296 (2706)
T KOG3533|consen 1228 QRLLKNMGVHEVVLELLQIPYDKKHDHKMMELMTLAHEFLQNFCKGNKQNQSLLHK------HISLFLDP---GMLE--A 1296 (2706)
T ss_pred HHHHHhcchHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHH------HHHhhcCc---chhh--H
Confidence 4457778999999999997654 47778888999999999998876544 23333321 1111 1
Q ss_pred HHHHHHhhC--------ChHhHHHHH---hcCc-HHHHHHhhc----cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCc
Q psy355 130 YAVSCLVRD--------NEECLKEFI---KRDG-FSVLLRCIQ----SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 193 (285)
Q Consensus 130 ~ALs~l~r~--------~~~~~~~f~---~~~g-i~~L~~~L~----~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~ 193 (285)
-.+..|-++ +....+.|+ +..| -...+++|+ ....-+++---.....|+..+.++...-.+.+-
T Consensus 1297 ~Tm~~IF~nN~~Lcsev~e~vvqHfVh~ie~hgR~v~yl~fLqt~Vkae~k~ikkcQdmVm~El~nagddVlvfYnD~aS 1376 (2706)
T KOG3533|consen 1297 GTMVAIFRNNRELCSEVPEEVVQHFVHLIETHGRNVIYLEFLQTLVKAEGKEIKKCQDMVMNELCNAGDDVLVFYNDNAS 1376 (2706)
T ss_pred HHHHHHHHhhHHHHhhCcHHHHHHHHHHHHHcCcCHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCCcEEEEecCccc
Confidence 111122221 233344444 2222 222233333 233333333334456788888888888888889
Q ss_pred HHHHHHhcccC
Q psy355 194 VEQMCVLIDIE 204 (285)
Q Consensus 194 v~~L~~lL~~~ 204 (285)
++.|..++++.
T Consensus 1377 f~~l~~MM~~e 1387 (2706)
T KOG3533|consen 1377 FEELEAMMKDE 1387 (2706)
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 358
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=48.96 E-value=1.1e+02 Score=22.85 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHH
Q psy355 77 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLL 156 (285)
Q Consensus 77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~ 156 (285)
+.+.|+.-+.|++.+.- .... .+..+.+.+.. ..+.-+-.++|.+-.++++.......+....+.+.+.
T Consensus 17 S~~~I~~lt~~a~~~~~-----~a~~-----iv~~i~~~i~~-~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 17 SQPSIQTLTKLAIENRK-----HAKE-----IVEIIEKHIKK-CPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred cHHHHHHHHHHHHHHHH-----HHHH-----HHHHHHHHHHh-CCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 67788888888888762 2222 34445555654 3457788999999999998655444455455577777
Q ss_pred HhhccCcHHHHHHHHHHHH
Q psy355 157 RCIQSKKEKLVIKSCFLIA 175 (285)
Q Consensus 157 ~~L~~~~~~v~~ka~~~l~ 175 (285)
......++++|.+...++.
T Consensus 86 ~~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 86 DAYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 7787788888887766543
No 359
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=48.89 E-value=41 Score=30.20 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=43.1
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhcCC--------------chHHHHHHHCCcHHHHHHhcccC
Q psy355 152 FSVLLRCIQSKKEKLVIKSCFLIACLCTDN--------------NQVKQVLLSMGMVEQMCVLIDIE 204 (285)
Q Consensus 152 i~~L~~~L~~~~~~v~~ka~~~l~~L~~~~--------------~~~~~~l~~~g~v~~L~~lL~~~ 204 (285)
+..++..|.+++...|.+|+.+|.+++.|. ......+.+.|++++|+.+|...
T Consensus 62 i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~ 128 (293)
T PF07923_consen 62 IEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMF 128 (293)
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 456777888889999999999999999873 13456778899999999998764
No 360
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=48.59 E-value=89 Score=25.64 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=51.9
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355 69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK 148 (285)
Q Consensus 69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~ 148 (285)
.+.....|+++-+|..|.-++.....+... - ...++.+-.++. +.+.-|+....|+|+.+...+|.....|++
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~-~-----~~~l~~~~~~~~-d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKKETD-F-----DLLLEIIERLLH-DEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhccc-H-----HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 455577788888888887777665543010 0 112333333333 356789999999999999999998888887
Q ss_pred cCcHH
Q psy355 149 RDGFS 153 (285)
Q Consensus 149 ~~gi~ 153 (285)
..+..
T Consensus 182 ~~~~~ 186 (197)
T cd06561 182 KNGLS 186 (197)
T ss_pred HHHHh
Confidence 66544
No 361
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=48.25 E-value=23 Score=26.92 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=26.0
Q ss_pred cCCchHHHHHHHCCcHHHHHHhcccCCCCCccH
Q psy355 179 TDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEM 211 (285)
Q Consensus 179 ~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~ 211 (285)
...|+.-..+++.|+++.|+.||.++ +.++
T Consensus 74 a~~P~LYp~lv~l~~v~sL~~LL~He---N~DI 103 (108)
T PF08216_consen 74 ATAPELYPELVELGAVPSLLGLLSHE---NTDI 103 (108)
T ss_pred cCChhHHHHHHHcCCHHHHHHHHCCC---Ccce
Confidence 45788999999999999999999998 6554
No 362
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=48.12 E-value=21 Score=27.07 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=22.1
Q ss_pred HHHcC--CHHHHHhhhcCCCHHHHHHHHHHHH
Q psy355 61 FLKMG--GLPVLQPLLEGSDPELRWRAAETVA 90 (285)
Q Consensus 61 ~~~~G--g~~~Lv~lL~s~~~~vr~~A~~~lg 90 (285)
+...| +-..|+.||+||++.||..||..+=
T Consensus 41 Lk~r~gd~r~aLl~LL~hpn~~VRl~AA~~~L 72 (106)
T PF09450_consen 41 LKSRGGDQRDALLPLLKHPNMQVRLWAAAHTL 72 (106)
T ss_dssp HHHSTT-GGGGGGGGGGSS-HHHHHHHHHTTT
T ss_pred HHhcCcchHHHHHHHHcCCChhHHHHHHHHHH
Confidence 44455 4478999999999999988876543
No 363
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=47.51 E-value=1.2e+02 Score=22.66 Aligned_cols=86 Identities=10% Similarity=0.139 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhc-CcchHHHHH-HcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355 39 DICIGALDNLSDYVC-SIDYANDFL-KMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 116 (285)
Q Consensus 39 ~~~~~al~~L~~lv~-~~dna~~~~-~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL 116 (285)
+.++.||..+..-.+ ..=.-.+++ .-+-+..|+.-.+.+++.....++..|..++. .|...+.+.+-|+..-|-++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence 467889888887543 233334444 34445566666678888899999999999886 566677888999998865554
Q ss_pred ccCCCHHHHH
Q psy355 117 EHDSNTTVQV 126 (285)
Q Consensus 117 ~~~~~~~v~~ 126 (285)
.. .++..+.
T Consensus 81 ~~-~~~~~~~ 89 (98)
T PF14726_consen 81 PN-VEPNLQA 89 (98)
T ss_pred hc-CCHHHHH
Confidence 43 3444443
No 364
>KOG4464|consensus
Probab=45.29 E-value=2.8e+02 Score=26.49 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--------cHHHHHHHHHHHHHHhcCCchHH-HHHHH
Q psy355 120 SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--------KEKLVIKSCFLIACLCTDNNQVK-QVLLS 190 (285)
Q Consensus 120 ~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--------~~~v~~ka~~~l~~L~~~~~~~~-~~l~~ 190 (285)
++..+...|+-+|+|++-+++.+++.|.+..-...+.+.+.+. ..-.=.+-.|+++.+ .+..+ +.+++
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltal---e~~~Rsql~~~ 185 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTAL---ETDHRSQLIAE 185 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHh---hHHHHHHHHHH
Confidence 3557889999999999999999999999887666555544321 111122345555544 33454 44557
Q ss_pred CCcHHHHHHhcccC
Q psy355 191 MGMVEQMCVLIDIE 204 (285)
Q Consensus 191 ~g~v~~L~~lL~~~ 204 (285)
.++++.+-+.|..+
T Consensus 186 l~Gl~~lt~~led~ 199 (532)
T KOG4464|consen 186 LLGLELLTNWLEDK 199 (532)
T ss_pred hcccHHHHHHhhcc
Confidence 78888888888765
No 365
>PF12055 DUF3536: Domain of unknown function (DUF3536); InterPro: IPR021923 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 274 to 285 amino acids in length. This domain is found associated with PF03065 from PFAM.
Probab=44.94 E-value=2.3e+02 Score=25.44 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhccCC---------------CHHHHHHHHHHHHHhh----cCcchH
Q psy355 6 RGFLLDALNSMM--------VNVGAELEKIIKTLKENQD---------------QKDICIGALDNLSDYV----CSIDYA 58 (285)
Q Consensus 6 ~~~L~~al~~~~--------~d~~~~mk~~l~~l~~~~~---------------~~~~~~~al~~L~~lv----~~~dna 58 (285)
.+||++.++.+. .|+.+...+.++++.+.+. +++++..++.-|+.-= ----.+
T Consensus 13 ld~Lrd~l~~~fe~~~~~l~~Dpw~ar~~Yi~Vil~~s~~~~~~Fl~~h~~~~l~~~e~~~al~LLEmQr~~l~mfTSCg 92 (285)
T PF12055_consen 13 LDWLRDRLDELFEEEGGELFKDPWAARDEYIEVILDRSPENVEAFLARHAKRPLSPEERVEALKLLEMQRHALLMFTSCG 92 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 467776666553 7999999999999988841 2466677776655421 112345
Q ss_pred HHHHHcCCHHHHHh
Q psy355 59 NDFLKMGGLPVLQP 72 (285)
Q Consensus 59 ~~~~~~Gg~~~Lv~ 72 (285)
.-|-++.|++++..
T Consensus 93 WFFdeisgiE~vq~ 106 (285)
T PF12055_consen 93 WFFDEISGIETVQI 106 (285)
T ss_pred HhhhcccchhHHHH
Confidence 66788888876643
No 366
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=44.55 E-value=1.4e+02 Score=22.61 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=46.6
Q ss_pred cCcHHHHHHhhccCC---CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcC
Q psy355 106 TDFLNLLLTSIEHDS---NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 106 ~g~l~~L~~LL~~~~---~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~ 180 (285)
.|.+..+-+.+.+.. +..-|+.++.+|+.+++-..+... ...|-+.-+|++. .+.++..|..+...++..
T Consensus 10 LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 10 LGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 356666666665433 557799999999999985443333 3345666666653 567888887777777655
No 367
>KOG1788|consensus
Probab=44.40 E-value=59 Score=34.77 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=65.5
Q ss_pred HHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHH
Q psy355 143 LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL 222 (285)
Q Consensus 143 ~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l 222 (285)
.+.+..+|.+.+|++.+-...+|+|-+-..++.++++.+|...+.+-+.|+++.|...+.-...+..++..+++..+..+
T Consensus 901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvemL 980 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEML 980 (2799)
T ss_pred HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHH
Confidence 45677889999999998888999999999999999999999999999999999998877654334667777776655443
No 368
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=43.56 E-value=79 Score=24.32 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=43.8
Q ss_pred HHHHHHhhccCc----HHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355 152 FSVLLRCIQSKK----EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 219 (285)
Q Consensus 152 i~~L~~~L~~~~----~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL 219 (285)
++.+.+++.... ..+...+..++.+.+..- ....+.+.++++.+..+|. ++.+++.|+.+|
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~~~~~~l~-----~~~~~~~A~~cl 148 (148)
T PF08389_consen 84 LEILSQILSQSSSEANEELVKAALKCLKSWISWI--PIELIINSNLLNLIFQLLQ-----SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTT-----SCCCHHHHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC--CHHHhccHHHHHHHHHHcC-----CHHHHHHHHHhC
Confidence 344555555432 888899999999888743 3456667789999999995 446688888875
No 369
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=43.26 E-value=4.8e+02 Score=29.68 Aligned_cols=142 Identities=15% Similarity=0.180 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhc----CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHH--HHHhcCc------
Q psy355 84 RAAETVADIVQNNPFSQNFIIQT----DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLK--EFIKRDG------ 151 (285)
Q Consensus 84 ~A~~~lg~~a~nn~~~q~~v~~~----g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~--~f~~~~g------ 151 (285)
.=..+|+.+-.+.|.....+... +-+..+++.-....++.....-+.-|++++.|...+.. .|+..++
T Consensus 451 ~fl~~ia~~Y~~rPe~~~~FW~d~e~~s~l~gFl~wa~~~~~~~l~~af~~ML~sLs~g~~~A~~a~~~L~~~~~~~~~~ 530 (1691)
T PF11894_consen 451 RFLLLIAYLYDGRPELALEFWSDPEVTSNLYGFLRWASDRNPSPLVSAFLEMLASLSSGPECASAAFNFLKDNSGKGRRS 530 (1691)
T ss_pred HHHHHHHHHHcCChHHHHHhCCCcccchhHhHHHHHHhhcCCchhHHHHHHHHHHHcCChHHHHHHHHHHhhcccCCCCC
Confidence 34567888888888655554332 34555666665433344557777889999987544422 3444444
Q ss_pred ----HHHHHHhhccC-------------------------------cHHHHHHHHHHHHHHhcCCchHHHHHHHCC---c
Q psy355 152 ----FSVLLRCIQSK-------------------------------KEKLVIKSCFLIACLCTDNNQVKQVLLSMG---M 193 (285)
Q Consensus 152 ----i~~L~~~L~~~-------------------------------~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g---~ 193 (285)
+..+...|+.- +...-..-..+++.++..++..+..+.+.. .
T Consensus 531 ~~~SW~~if~~L~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~el~~ee~~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~ 610 (1691)
T PF11894_consen 531 SSVSWDQIFQSLQYYIDKLRQQQQQQQSQSIQRSRSPPPEIELSPEEVEMLSAYLRLISSVVRNSEQARSALLENPNWNP 610 (1691)
T ss_pred CcccHHHHHHHHHHHHHHhccccCCCCccccccCCCCCcccCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCch
Confidence 23333333211 223335556777888888888888887654 6
Q ss_pred HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 194 v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
++.|..++..+ -.+.++..++.+|.+++..++
T Consensus 611 ~~~L~~L~~~~--vp~~Lkaai~~~Laal~~~~~ 642 (1691)
T PF11894_consen 611 IDILFGLLSCP--VPPSLKAAIFNALAALAAKSP 642 (1691)
T ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHHHHhcCH
Confidence 89999999986 345799999999999964444
No 370
>KOG1949|consensus
Probab=43.12 E-value=3.9e+02 Score=27.49 Aligned_cols=146 Identities=14% Similarity=0.160 Sum_probs=79.0
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHhh-CCH----HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh
Q psy355 68 PVLQPLLEGSDPELRWRAAETVADIVQ-NNP----FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC 142 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~-nn~----~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~ 142 (285)
|.|.+-|+.++..||..|+.++-++-- -.| .-.+.+++ .-+..|-+||++ +.+.||..|.--++.++.-
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d-~~p~VRS~a~~gv~k~~s~---- 250 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLED-PYPMVRSTAILGVCKITSK---- 250 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcC-CCchHHHHHHHHHHHHHHH----
Confidence 344556778999999999999887532 111 11222222 245668889986 6789999998888877542
Q ss_pred HHHHHhcC----cHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHH
Q psy355 143 LKEFIKRD----GFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLS 217 (285)
Q Consensus 143 ~~~f~~~~----gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~ 217 (285)
+-.++-.+ .+..+..-+.. +...||-...--|..++.. | ....+.+. ++|+|-..|... ...+|..+..
T Consensus 251 fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p-~sh~~le~-~Lpal~~~l~D~---se~VRvA~vd 324 (1005)
T KOG1949|consen 251 FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-P-LSHPLLEQ-LLPALRYSLHDN---SEKVRVAFVD 324 (1005)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-c-cchhHHHH-HHHhcchhhhcc---chhHHHHHHH
Confidence 11222111 11222222322 2356666555555555443 2 11122221 223444444444 6677777777
Q ss_pred HHHHHHhc
Q psy355 218 ALASLIKD 225 (285)
Q Consensus 218 aL~~l~~~ 225 (285)
.|..|-..
T Consensus 325 ~ll~ik~v 332 (1005)
T KOG1949|consen 325 MLLKIKAV 332 (1005)
T ss_pred HHHHHHhh
Confidence 77665433
No 371
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=41.74 E-value=55 Score=26.41 Aligned_cols=88 Identities=14% Similarity=0.170 Sum_probs=65.8
Q ss_pred hCChHhHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcC--CchHHHHHHHCCcHHHHHHhcccCCCCCccHHH
Q psy355 137 RDNEECLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTD--NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNE 213 (285)
Q Consensus 137 r~~~~~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~--~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e 213 (285)
++++.-.+.|.+.+.+..+++.++. ....++......++-|..+ ++...-++.+.+.+..++..=-. -.+.++..
T Consensus 13 q~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d--~~~ee~l~ 90 (149)
T PF09758_consen 13 QNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFD--FSDEEVLS 90 (149)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCC--CCcchhHH
Confidence 3466788999999999999999988 4678888888888777765 55667788888999877765222 13777888
Q ss_pred HHHHHHHHHHhcC
Q psy355 214 HLLSALASLIKDS 226 (285)
Q Consensus 214 ~al~aL~~l~~~~ 226 (285)
.-...|..|+-.-
T Consensus 91 yYIsfLK~lSlkl 103 (149)
T PF09758_consen 91 YYISFLKTLSLKL 103 (149)
T ss_pred HHHHHHHHHHhhc
Confidence 7777777776444
No 372
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=41.53 E-value=83 Score=28.66 Aligned_cols=76 Identities=14% Similarity=0.066 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhhcCcchHH--HHHHcCCHHHHHhhhcCC--CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHH
Q psy355 38 KDICIGALDNLSDYVCSIDYAN--DFLKMGGLPVLQPLLEGS--DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 113 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~--~~~~~Gg~~~Lv~lL~s~--~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~ 113 (285)
+++..-.+..|..+..+.+... +. ...-...++.++.|+ .+.+|..|..++..+...+|.. +...++.-+.
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~ 250 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW 250 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence 4555556666666554433211 11 112235677888887 8999999999999999999873 4444666677
Q ss_pred Hhhcc
Q psy355 114 TSIEH 118 (285)
Q Consensus 114 ~LL~~ 118 (285)
+.+..
T Consensus 251 ~~l~~ 255 (339)
T PF12074_consen 251 KWLSS 255 (339)
T ss_pred HHHHh
Confidence 76654
No 373
>KOG1087|consensus
Probab=40.28 E-value=99 Score=29.90 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=53.6
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 152 FSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 152 i~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
+..|.+-+.+...+++.-|..+|--++.+ +..+...+.+.+++..+|.+.+.. ..+.++|+++|..|..-.
T Consensus 40 vralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~-~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 40 VRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNK-PRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccC-CcchhHHHHHHHHHHHHH
Confidence 34555666777778888888877766665 667777888999999988887753 147889999999886544
No 374
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=40.25 E-value=3.1e+02 Score=25.47 Aligned_cols=136 Identities=11% Similarity=0.056 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHHHHhcC---cHHHHHHhhc-cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHH
Q psy355 78 DPELRWRAAETVADIVQNNPFSQNFIIQTD---FLNLLLTSIE-HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFS 153 (285)
Q Consensus 78 ~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g---~l~~L~~LL~-~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~ 153 (285)
+..+..+|++++|.+.. +|..-..+-+.- .+...+..+. ...++.+...++|.|+.= ..++. ++...-+.
T Consensus 59 ~~~L~~qALkll~~~l~-~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q--~f~~~---~~~~~~~~ 132 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLY-HPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ--KFSPK---IMTSDRVE 132 (372)
T ss_pred chHHHHHHHHHHHHHHc-cHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--CCCCc---ccchhhHH
Confidence 67899999999999995 565554443322 3445555664 345678888888888862 23321 33334444
Q ss_pred HHHHhhc-----cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 154 VLLRCIQ-----SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 154 ~L~~~L~-----~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
.++..+. -++..+..++..++..|+...|..-..-+ .-+++.++..+-+. ..+++..|...+..+.
T Consensus 133 ~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~-~~W~~~l~~~l~~~---~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 133 RLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHA-DIWFPILFPDLLSS---AKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc---chHHHHHHHHHHHHHH
Confidence 4444433 24567778888889999887765432222 13778888777776 7888888776665554
No 375
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=39.73 E-value=3.6e+02 Score=30.88 Aligned_cols=100 Identities=11% Similarity=0.234 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHHhhC---CHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH
Q psy355 76 GSDPELRWRAAETVADIVQN---NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF 152 (285)
Q Consensus 76 s~~~~vr~~A~~~lg~~a~n---n~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi 152 (285)
+++..++..|...|..++.- .++....=.+...+.+|..++.+..+..+|...+.++.+|+......++ .|+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIk-----SGW 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK-----SGW 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh-----cCc
Confidence 55677888888887776652 1111111112346778888887777889999999999999876443322 388
Q ss_pred HHHHHhhcc----CcHHHHHHHHHHHHHHhcC
Q psy355 153 SVLLRCIQS----KKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 153 ~~L~~~L~~----~~~~v~~ka~~~l~~L~~~ 180 (285)
..+..++.. .+..+...|--.+..++++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence 888888773 3566666666656655543
No 376
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=39.66 E-value=25 Score=27.07 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=42.9
Q ss_pred cHHHHHHhc-ccCCCCCccHHHHHHHHHHHHHhcChHHH-hhcccCcccHHHHHHHH--HHHc--cChHhhHHHHHHHHH
Q psy355 193 MVEQMCVLI-DIEDALDTEMNEHLLSALASLIKDSTEAQ-SLCRLEPLNLKFKLNFI--KEKH--AGNEVYHKELEHVNS 266 (285)
Q Consensus 193 ~v~~L~~lL-~~~~~~d~~~~e~al~aL~~l~~~~~~~~-~~~~~~~~~l~~~l~~~--~~~l--~~~~e~~~~~~~~~~ 266 (285)
++..|..-| ..+ ..+....-+||..|.+|+.++++.+ ..++.. ...|+.. .... .+.+.+..+.++|..
T Consensus 40 I~~~l~kRL~~~~-~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~----~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~ 114 (125)
T PF01417_consen 40 IMDVLWKRLSKSD-GKNWRHVYKALTLLEYLLKNGSERFVDELRDH----IDIIRELQDFQYVDPKGKDQGQNVREKAKE 114 (125)
T ss_dssp HHHHHHHHHHSST-SSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHT----HHHHHGGGG---BBTTSTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcchhHHHHHHHHHHHHHHHCCHHHHHHHHHH----HHHHhhcceeeccCCCCccHHHHHHHHHHH
Confidence 344555555 221 1267788999999999999997633 233211 1122211 1111 123356778899999
Q ss_pred HHHHhcC
Q psy355 267 VLTEVFE 273 (285)
Q Consensus 267 il~~~f~ 273 (285)
|++..++
T Consensus 115 i~~lL~d 121 (125)
T PF01417_consen 115 ILELLND 121 (125)
T ss_dssp HHHHHTS
T ss_pred HHHHhCC
Confidence 9988864
No 377
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=39.31 E-value=56 Score=23.02 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=23.5
Q ss_pred CHHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q psy355 2 NEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQ 37 (285)
Q Consensus 2 ~~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~ 37 (285)
++..-+||++.+..+ -++||..++.+....++
T Consensus 9 ~~~~skWL~~~l~dm----d~kvk~mlklieedgdS 40 (74)
T PF07765_consen 9 SPKQSKWLQENLSDM----DEKVKAMLKLIEEDGDS 40 (74)
T ss_pred CCCCCHHHHHHHHHH----HHHHHHHHHHhccCcch
Confidence 567779999999888 45677777777664444
No 378
>KOG0891|consensus
Probab=39.24 E-value=4.6e+02 Score=30.94 Aligned_cols=150 Identities=15% Similarity=0.093 Sum_probs=82.3
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHH--HHHHhhCChHhHHHHH
Q psy355 70 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYA--VSCLVRDNEECLKEFI 147 (285)
Q Consensus 70 Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~A--Ls~l~r~~~~~~~~f~ 147 (285)
+..-+..+.-.++..+...+|+++..||..--..+..-.+..+-.+..+ . ..|.+...| +.-++.+.+.-...++
T Consensus 570 ~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~s-g--~~r~~~~~a~~~~~~i~~~~~~i~~~v 646 (2341)
T KOG0891|consen 570 LFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFS-G--MARTKEESAKLLCELIISSPVLISPYV 646 (2341)
T ss_pred HHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhc-c--hHHhHHHHHHHhhHHHHHHHHHHHhhc
Confidence 3444556777899999999999999998422222222222211122211 1 112222221 2222333333344444
Q ss_pred hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 148 KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 148 ~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+ +-+..++..+..++..+...+...+..||..+-......++ -.++.+.+.+... ....-+..++.++.++.+..
T Consensus 647 ~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~--s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 647 G-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQ--SSLGKRLAALKALGQLESST 721 (2341)
T ss_pred C-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHh--hhhhchhHHHHHhhhhhccc
Confidence 2 33466677788888889899999999998764323333333 3334444444332 15566788888888887655
No 379
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=38.86 E-value=92 Score=19.73 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=27.0
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy355 69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII 104 (285)
Q Consensus 69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~ 104 (285)
+++++|.+.+.. |.+-+.+|+++.+=.|.-++.+.
T Consensus 10 Vll~fl~~~e~~-r~~ll~vi~tlL~fs~~e~~~~~ 44 (46)
T smart00755 10 VLLQFLTLRESE-RETLLKVISTVLQLSPEEMQKLL 44 (46)
T ss_pred HHHHHhccCcch-HHHHHHHHHHHhCCCHHHHHHHH
Confidence 567888887776 88888899999987777665543
No 380
>KOG4524|consensus
Probab=38.72 E-value=1.5e+02 Score=31.20 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=67.4
Q ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHH---HhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCch
Q psy355 107 DFLNLLLTSIEHDSNTTVQVKSLYAVSC---LVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ 183 (285)
Q Consensus 107 g~l~~L~~LL~~~~~~~v~~~a~~ALs~---l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~ 183 (285)
.++..-..+|++ ++..+|.+|+-.++. +...++...-..+ +-.++.+++.+..+++-+...|..+|..++....+
T Consensus 803 kIl~r~~~~LS~-e~l~irvkaLdvl~~gl~~La~~~n~LlPlv-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSH-ESLRIRVKALDVLSLGLPLLATYHNLLLPLV-HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcc-hhHHHHHHHHHHHHhccHHHhccchhHhHHH-HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 356666778886 678999999988875 3444554333333 45689999999999999999999999999876444
Q ss_pred H-HHHHHHCCcHHHHHHhccc
Q psy355 184 V-KQVLLSMGMVEQMCVLIDI 203 (285)
Q Consensus 184 ~-~~~l~~~g~v~~L~~lL~~ 203 (285)
+ ++.+. ..++|.+-.++..
T Consensus 881 Fv~sR~l-~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 881 FVASRFL-EDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHH-HHHHHHHHHHHHH
Confidence 4 34444 4677777766554
No 381
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=37.53 E-value=42 Score=26.73 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=51.3
Q ss_pred hHHHHHHcCCH-HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHH
Q psy355 57 YANDFLKMGGL-PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 135 (285)
Q Consensus 57 na~~~~~~Gg~-~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l 135 (285)
|...+.+..-+ ..+..+|.+++++||..|+.||.+- ++|....+ =..|-+|++. ...|..- ..+
T Consensus 8 npk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~--k~~~l~pY------~d~L~~Lldd---~~frdeL----~~f 72 (141)
T PF07539_consen 8 NPKSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTW--KDPYLTPY------KDNLENLLDD---KTFRDEL----TTF 72 (141)
T ss_pred CcHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CcHHHHhH------HHHHHHHcCc---chHHHHH----Hhh
Confidence 34444444433 4667899999999999999999863 45533221 2557777763 2444332 222
Q ss_pred hhCC-hHhHHHHHhcCcHHHHHHhhc
Q psy355 136 VRDN-EECLKEFIKRDGFSVLLRCIQ 160 (285)
Q Consensus 136 ~r~~-~~~~~~f~~~~gi~~L~~~L~ 160 (285)
..+. ...++.--....+|+++++|-
T Consensus 73 ~~~~~~~~I~~ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 73 NLSDESSVIEEEHRPELMPVVLRILY 98 (141)
T ss_pred cccCCcCCCCHHHHhHHHHHHHHHHH
Confidence 2221 111222233456788888875
No 382
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=37.26 E-value=3.4e+02 Score=25.07 Aligned_cols=61 Identities=8% Similarity=0.171 Sum_probs=31.3
Q ss_pred hcCcHH---HHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 148 KRDGFS---VLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 148 ~~~gi~---~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
..||-. .+..++...+.+......|..+.....-| .|.|.| |..+ +..+|.-+...|..++
T Consensus 203 ~~~G~~fL~Ff~~ll~~~n~~~~~~~~~~~~~~le~ip---------~WAP~L---L~y~---d~~VR~~Te~fL~~~l 266 (337)
T PF12030_consen 203 NAEGRAFLDFFRGLLNLRNERIGEDRAWFLSLVLERIP---------DWAPGL---LGYP---DRSVRNGTEDFLQELL 266 (337)
T ss_pred cCCcHhHHHHHHHHHhCcCccccccHHHHHHHHHHccc---------ccchHh---hCCC---chhHHHHHHHHHHHHh
Confidence 455654 33555666566655555566555544433 244443 3334 5555555555555544
No 383
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=36.70 E-value=3.2e+02 Score=24.78 Aligned_cols=143 Identities=10% Similarity=0.156 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh-hcc--CCCHHHH-HHHHHHHHHHhhC----ChHhHHHHHhcCc
Q psy355 80 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS-IEH--DSNTTVQ-VKSLYAVSCLVRD----NEECLKEFIKRDG 151 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L-L~~--~~~~~v~-~~a~~ALs~l~r~----~~~~~~~f~~~~g 151 (285)
.++...++.+.+..++.+.... +....+|+|+.- |.. ...+..| ...++.++.+++. ..+....+. ...
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~--v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~-~~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEE--VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQIL-EAV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHH--HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHH-HHH
Confidence 5888999999999987775443 456688988873 321 0122222 2444555555542 223333343 345
Q ss_pred HHHHHHhhccC---cHHHHHHHHHHHHHHhcCCchHHHHHH---HCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 152 FSVLLRCIQSK---KEKLVIKSCFLIACLCTDNNQVKQVLL---SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 152 i~~L~~~L~~~---~~~v~~ka~~~l~~L~~~~~~~~~~l~---~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
+...+..+..+ -++.|..--.++.+++...+...-.+- -.-++..++--++++ +.++-+.++.+|..++..
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~---~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT---NREISETGLNILLELLNN 195 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS---SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHH
Confidence 66667777653 478888887788887765322111110 013456667777888 999999999999988876
Q ss_pred ChH
Q psy355 226 STE 228 (285)
Q Consensus 226 ~~~ 228 (285)
...
T Consensus 196 ~~~ 198 (319)
T PF08767_consen 196 VSK 198 (319)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 384
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=35.11 E-value=55 Score=23.03 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=26.2
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhC
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQN 95 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n 95 (285)
-++-|+.|-.|..|.-|..|+.+||+|..+
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~~ 69 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILYR 69 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999853
No 385
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=34.95 E-value=3.5e+02 Score=24.53 Aligned_cols=216 Identities=16% Similarity=0.116 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhcCCH--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHH
Q psy355 6 RGFLLDALNSMMVNV--GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRW 83 (285)
Q Consensus 6 ~~~L~~al~~~~~d~--~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~ 83 (285)
|--.=++|..+.... .+.+...++++.+.. .+..+..++..|...+...+ .-+.-..+..+.+=++...+.+|.
T Consensus 4 r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~-nE~aL~~~l~al~~~~~~~~---~~~~~~~~~~~~kGl~~kk~~vR~ 79 (339)
T PF12074_consen 4 RVLHASMLSSLPSSSLSSKIVQGLSPLLSKES-NEAALSALLSALFKHLFFLS---SELPKKVVDAFKKGLKDKKPPVRR 79 (339)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHhC---cCCCHHHHHHHHHHhcCCCCcHHH
Confidence 334445555554211 233333444444433 34555666666655443220 001112345566667777777999
Q ss_pred HHHHHHHHHhh---CCHHHHHHHHhcCcHHHHHHhhccC---CCHHHH---HHHHHHHHHHhhCChHhHHH-------HH
Q psy355 84 RAAETVADIVQ---NNPFSQNFIIQTDFLNLLLTSIEHD---SNTTVQ---VKSLYAVSCLVRDNEECLKE-------FI 147 (285)
Q Consensus 84 ~A~~~lg~~a~---nn~~~q~~v~~~g~l~~L~~LL~~~---~~~~v~---~~a~~ALs~l~r~~~~~~~~-------f~ 147 (285)
.-+..+|.+.. |.. ....+ ...+|.|++.++.. +-.... ..+++++-.+.+........ ..
T Consensus 80 ~w~~~~~~~~~~~~~~~-~~~~~--~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 156 (339)
T PF12074_consen 80 AWLLCLGEALWESPNSD-SLKFA--EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLA 156 (339)
T ss_pred HHHHHHHHHHhhccCch-HHHHH--HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhc
Confidence 99999999986 222 22222 34889999888531 111211 12233333322211111111 00
Q ss_pred hcCcHHHH--HHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355 148 KRDGFSVL--LRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 148 ~~~gi~~L--~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~ 224 (285)
-..-.+.| -+..+. .+..-....+.++..+..+.++....-....+-..++.++-++ +...++|..|+.+|..+..
T Consensus 157 ~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~-~~~~~vR~~A~~~l~~l~~ 235 (339)
T PF12074_consen 157 LDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSS-NVSWKVRRAALSALKKLYA 235 (339)
T ss_pred cCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 00000000 011111 1222222233344444333221111111223445666666654 2257899999999999998
Q ss_pred cChHH
Q psy355 225 DSTEA 229 (285)
Q Consensus 225 ~~~~~ 229 (285)
.+|..
T Consensus 236 ~~~~~ 240 (339)
T PF12074_consen 236 SNPEL 240 (339)
T ss_pred hChHH
Confidence 88864
No 386
>PF01279 Parathyroid: Parathyroid hormone family; InterPro: IPR001415 Parathyroid hormone (PTH) is a polypeptidic hormone that elevates calcium level by dissolving the salts in bone and preventing their renal excretion. The 'parathyroid hormone-related protein' (PTH-rP) is structurally related to PTH [] and seems to play a physiological role in lactation, possibly as a hormone for the mobilisation and/or transfer of calcium to the milk. PTH and PTH-rP bind to the same G-protein coupled receptor.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3FFD_P 1BZG_A 1M5N_Q 3H3G_B 1ZWC_A 1ZWF_A 2L1X_A 3C4M_C 1ZWA_A 1ZWB_A ....
Probab=34.90 E-value=31 Score=25.81 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=13.4
Q ss_pred HHhHHHHHHHHHHhc
Q psy355 3 EANRGFLLDALNSMM 17 (285)
Q Consensus 3 ~e~~~~L~~al~~~~ 17 (285)
.+|+.||++.|..+-
T Consensus 21 ~~R~~WL~~~l~~vh 35 (100)
T PF01279_consen 21 LERQMWLQKKLQEVH 35 (100)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccc
Confidence 589999999999984
No 387
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=34.66 E-value=3.3e+02 Score=24.12 Aligned_cols=207 Identities=12% Similarity=0.092 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhhcCcch-----HHHHH------H-cCCHHHHHhhh-cC-CCHHHHHHHHHHHHHHhhCCHH-----
Q psy355 38 KDICIGALDNLSDYVCSIDY-----ANDFL------K-MGGLPVLQPLL-EG-SDPELRWRAAETVADIVQNNPF----- 98 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dn-----a~~~~------~-~Gg~~~Lv~lL-~s-~~~~vr~~A~~~lg~~a~nn~~----- 98 (285)
+.+...|+.-|..+++.+|- .+.+. . .|+++-+..++ +- -++.--..+..++..++.-...
T Consensus 21 E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~ 100 (262)
T PF14225_consen 21 EHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGD 100 (262)
T ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCC
Confidence 35666666666666655441 11111 1 35555554432 11 2233445677777777653111
Q ss_pred --HHHHHHhcCcHHHHHHhhccCC---CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHH-HHHHH
Q psy355 99 --SQNFIIQTDFLNLLLTSIEHDS---NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLV-IKSCF 172 (285)
Q Consensus 99 --~q~~v~~~g~l~~L~~LL~~~~---~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~-~ka~~ 172 (285)
.+-.+.=.+.+|.++.-++.+. .......++.+|+.++... ..+++..++.....+.++-+ .-..-
T Consensus 101 ~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~--------~~~~La~il~~ya~~~fr~~~dfl~~ 172 (262)
T PF14225_consen 101 SQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ--------GLPNLARILSSYAKGRFRDKDDFLSQ 172 (262)
T ss_pred CCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC--------CCccHHHHHHHHHhcCCCCHHHHHHH
Confidence 1111122346788887777643 1134456668888877421 12345555555444332111 11112
Q ss_pred HHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHc
Q psy355 173 LIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKH 251 (285)
Q Consensus 173 ~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l 251 (285)
++.++... .|.. +...+.-|..+|.++ -+-++.+++..|..++..-+.. .| .-.+.|.-.++-+
T Consensus 173 v~~~l~~~f~P~~-----~~~~l~~Ll~lL~n~---~~w~~~~~L~iL~~ll~~~d~~-----~~--~~~dlispllrlL 237 (262)
T PF14225_consen 173 VVSYLREAFFPDH-----EFQILTFLLGLLENG---PPWLRRKTLQILKVLLPHVDMR-----SP--HGADLISPLLRLL 237 (262)
T ss_pred HHHHHHHHhCchh-----HHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHhccccCC-----CC--cchHHHHHHHHHh
Confidence 22333322 1222 124566788999888 8899999999999999776422 22 1134555555666
Q ss_pred cChHhhHHHHHHHHHHH
Q psy355 252 AGNEVYHKELEHVNSVL 268 (285)
Q Consensus 252 ~~~~e~~~~~~~~~~il 268 (285)
|.. -..+-.+....++
T Consensus 238 ~t~-~~~eAL~VLd~~v 253 (262)
T PF14225_consen 238 QTD-LWMEALEVLDEIV 253 (262)
T ss_pred CCc-cHHHHHHHHHHHH
Confidence 642 2333334444444
No 388
>KOG4524|consensus
Probab=34.56 E-value=3.1e+02 Score=28.99 Aligned_cols=99 Identities=21% Similarity=0.156 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhhcCc-chHHHHH--HcCCHHHHHhhhcCCCHHHHHHHHHHHHHHh
Q psy355 19 NVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYVCSI-DYANDFL--KMGGLPVLQPLLEGSDPELRWRAAETVADIV 93 (285)
Q Consensus 19 d~~~~mk~~l~~l~~~~~~--~~~~~~al~~L~~lv~~~-dna~~~~--~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a 93 (285)
+.++..+++++.-..--.+ -..++.||+.|..-+.=. +.-+-|. -.-.||.++..+...+|-+..+|+.+|-++.
T Consensus 796 ~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~ 875 (1014)
T KOG4524|consen 796 DQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMG 875 (1014)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 4566666665543333332 256888888888743221 1222222 2347999999999999999999999999987
Q ss_pred h-CCHHHHHHHHhcCcHHHHHHhhcc
Q psy355 94 Q-NNPFSQNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 94 ~-nn~~~q~~v~~~g~l~~L~~LL~~ 118 (285)
. ..+..+..+.+ .++|.+-.++..
T Consensus 876 ~~sgDFv~sR~l~-dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 876 KYSGDFVASRFLE-DVLPWLKHLCQD 900 (1014)
T ss_pred HHhhhHHHHHHHH-HHHHHHHHHHHH
Confidence 5 34455555544 477777766653
No 389
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=34.48 E-value=2.7e+02 Score=23.10 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=34.9
Q ss_pred cCcHHHHHHHHHHHHHHhc---CCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 161 SKKEKLVIKSCFLIACLCT---DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 161 ~~~~~v~~ka~~~l~~L~~---~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+.+..+.+.|..++...+. .++.... .++..++.+++.. ..+..+.-.++.++..|+..+
T Consensus 98 ~~tesl~~~s~~AL~~~~~~~~~~~~~~~-----~v~~~l~~il~~~-~~~dRv~vP~l~tl~~Ll~~~ 160 (193)
T PF12612_consen 98 GLTESLVRASSAALLSYLRELSDSPEELE-----QVLSDLLSILKEN-LRNDRVVVPLLKTLDFLLSSG 160 (193)
T ss_pred CCchhHHHHHHHHHHHHHHHhhcCHHHHH-----HHHHHHHHHHHHh-CCCCCeeecHHHHHHHHHhCc
Confidence 3455666666666665554 2322222 2445566666642 235667778888888888775
No 390
>PF14980 TIP39: TIP39 peptide
Probab=34.46 E-value=36 Score=21.68 Aligned_cols=15 Identities=7% Similarity=0.242 Sum_probs=12.3
Q ss_pred HHhHHHHHHHHHHhc
Q psy355 3 EANRGFLLDALNSMM 17 (285)
Q Consensus 3 ~e~~~~L~~al~~~~ 17 (285)
=|||+||..-|..+.
T Consensus 33 mER~~WLnSYMqkLL 47 (51)
T PF14980_consen 33 MERQKWLNSYMQKLL 47 (51)
T ss_pred HHHHHHHHHHHHHHH
Confidence 489999998887764
No 391
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=34.35 E-value=1.5e+02 Score=21.59 Aligned_cols=71 Identities=14% Similarity=0.051 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCc
Q psy355 162 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEP 237 (285)
Q Consensus 162 ~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~ 237 (285)
++..+|..|+.+++.++....+.-..+ +..++..+.+.+.++ +..+- .-..|+..|..-+++.++.+--|.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L-~~Ri~~tl~k~l~d~---~~~~~-t~YGAi~gL~~lG~~~vr~~ilP~ 88 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTL-QPRITRTLLKALLDP---KKPLG-THYGAIVGLSALGPEAVRALILPN 88 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHcCC---CCCHH-HHHHHHHHHHHHHHHHHHHhhccC
Confidence 468999999999999997622111111 124556777777765 33332 335555555656777777664443
No 392
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=34.33 E-value=2.8e+02 Score=30.89 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=48.2
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 73 LLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 73 lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
||.|+++.|+.-+...-..+=... ..+|+. ++..|+..+-+. +..-...|+..|..++..++.....|
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqe-----Vv~~Lvthi~sg-~~~ev~~aL~vL~~L~~~~~~~l~~f 511 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDSYCQQE-----VVGALVTHIGSG-NSQEVDAALDVLCELAEKNPSELQPF 511 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-HHHHHH-----HHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccchhHHH-----HHHHHHHHHcCC-cHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 567899999999988888776654 345655 466687777654 34455788999999998877766554
No 393
>KOG0889|consensus
Probab=32.31 E-value=6.2e+02 Score=31.04 Aligned_cols=161 Identities=12% Similarity=0.052 Sum_probs=90.0
Q ss_pred HcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhc-C--cHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355 63 KMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFIIQT-D--FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD 138 (285)
Q Consensus 63 ~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~-g--~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~ 138 (285)
-.+.+.+++.-|.+|++.||..+-.+|.+++... +...+...-. . .+|++.+.+.+ ..-.++..-+-++-..+.-
T Consensus 1124 ~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~-~p~~~qig~vd~~~fC~~l 1202 (3550)
T KOG0889|consen 1124 AMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRA-LPFTIQIGHLDAITFCLSL 1202 (3550)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccccccc-CCHHHHhhhHHHHHHHHHc
Confidence 3467888999999999999999999999998754 2111111000 0 23444444443 3345666666666655444
Q ss_pred ChHh-------HHHHHhcCcHH-----H---HHHhhccC----cHHHHHHHHHHHHHHhcCCch--HHHHHHHCCcHHHH
Q psy355 139 NEEC-------LKEFIKRDGFS-----V---LLRCIQSK----KEKLVIKSCFLIACLCTDNNQ--VKQVLLSMGMVEQM 197 (285)
Q Consensus 139 ~~~~-------~~~f~~~~gi~-----~---L~~~L~~~----~~~v~~ka~~~l~~L~~~~~~--~~~~l~~~g~v~~L 197 (285)
.|.- ...+...+++. - +......+ ..++|..+.-++...+...+. ....=...+.+..+
T Consensus 1203 ~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~ 1282 (3550)
T KOG0889|consen 1203 GPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVF 1282 (3550)
T ss_pred CCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHH
Confidence 3332 11111111111 1 11211111 234566666666554433221 11111234677788
Q ss_pred HHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 198 CVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 198 ~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
.+-|.++ .+++.+.+..++.......+
T Consensus 1283 fk~l~~~---~~Ei~~~~~~~l~~v~~~~~ 1309 (3550)
T KOG0889|consen 1283 FKSLYKR---SSELIEVALEGLRKVLAQDV 1309 (3550)
T ss_pred HHHHcCC---hHHHHHHHHHHHHhhhhccc
Confidence 8888888 89999999999999887764
No 394
>PRK05408 oxidative damage protection protein; Provisional
Probab=31.52 E-value=43 Score=24.53 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=15.3
Q ss_pred CCHHhHHHHHHHHHHhc
Q psy355 1 MNEANRGFLLDALNSMM 17 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~ 17 (285)
|+++.|+||++-|+.+.
T Consensus 58 ~dp~ar~~L~~qMekF~ 74 (90)
T PRK05408 58 MDPEARKFLEEQMEKFL 74 (90)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 78999999999998885
No 395
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=30.80 E-value=3.1e+02 Score=22.66 Aligned_cols=77 Identities=9% Similarity=0.103 Sum_probs=50.4
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHH
Q psy355 108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV 187 (285)
Q Consensus 108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~ 187 (285)
..+.+.+.+.+ .++-+|+.++-.+....+... .. ..+..+...+.+++.-+|....|+|..+...+|+....
T Consensus 121 ~~~~~~~W~~s-~~~w~rR~~~v~~~~~~~~~~--~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 121 ALELLEKWAKS-DNEWVRRAAIVMLLRYIRKED--FD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp HHHHHHHHHHC-SSHHHHHHHHHCTTTHGGGCH--HH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHhC-CcHHHHHHHHHHHHHHHHhcC--HH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 45556666665 677778777666655554411 11 12344555677889999999999999999998877766
Q ss_pred HHHCC
Q psy355 188 LLSMG 192 (285)
Q Consensus 188 l~~~g 192 (285)
++...
T Consensus 193 ~l~~~ 197 (213)
T PF08713_consen 193 FLQKN 197 (213)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 66543
No 396
>KOG2549|consensus
Probab=30.69 E-value=5.4e+02 Score=25.46 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=74.3
Q ss_pred CCHHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC----------------C-------HHHHHHHHHHHHHhhcCcch
Q psy355 1 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQD----------------Q-------KDICIGALDNLSDYVCSIDY 57 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~----------------~-------~~~~~~al~~L~~lv~~~dn 57 (285)
+|.|-.-+..+..+.++-++...+++++..|.+... + .+.....+....-|. +|
T Consensus 201 LS~ElQlYy~~It~a~~g~~~~~r~eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl---~N 277 (576)
T KOG2549|consen 201 LSVELQLYYKEITEACTGSDEPLRQEALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL---DN 277 (576)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh---cC
Confidence 466777777888877777778888889988877662 0 112222222222233 33
Q ss_pred HHHHHH---cCCHHHHHhhhcC----------CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC-CCHH
Q psy355 58 ANDFLK---MGGLPVLQPLLEG----------SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-SNTT 123 (285)
Q Consensus 58 a~~~~~---~Gg~~~Lv~lL~s----------~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~-~~~~ 123 (285)
.+-|.. .-.+|.++.|+=+ .+-.+|.-|+..++.++.+-....+. ++..++..|.+.|... ++..
T Consensus 278 p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~s 356 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLS 356 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCch
Confidence 332211 2235666665432 23458888888888888776554443 4445666666665532 3445
Q ss_pred HHHHHHHHHHHH
Q psy355 124 VQVKSLYAVSCL 135 (285)
Q Consensus 124 v~~~a~~ALs~l 135 (285)
...-|+..|+.+
T Consensus 357 t~YGai~gL~~l 368 (576)
T KOG2549|consen 357 THYGAIAGLSEL 368 (576)
T ss_pred hhhhHHHHHHHh
Confidence 555555555554
No 397
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=30.60 E-value=50 Score=20.29 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=23.5
Q ss_pred HHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHH
Q psy355 88 TVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYA 131 (285)
Q Consensus 88 ~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~A 131 (285)
+|+.+++-+|..- ....+...+..-+. ++++.||..|+..
T Consensus 2 ~l~~iv~~dp~ll---~~~~v~~~i~~rl~-D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLL---DSSDVQSAIIRRLS-DSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCcccc---chHHHHHHHHHHhc-CCChHHHHHHHHH
Confidence 5666776666421 11234455555565 4678999888754
No 398
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=29.93 E-value=1.9e+02 Score=23.17 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=59.8
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh----HHHHHhcCcHHHHHHhhcc--------C---cHHH------H
Q psy355 109 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC----LKEFIKRDGFSVLLRCIQS--------K---KEKL------V 167 (285)
Q Consensus 109 l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~----~~~f~~~~gi~~L~~~L~~--------~---~~~v------~ 167 (285)
+..++..|.++ ...-|.+|+-.|-.+.+.++.. ...+ ...+..|.+++.. + .... .
T Consensus 6 i~~~~~~L~S~-k~keR~~al~~L~~il~~~~~~~~l~~k~~--~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL 82 (155)
T PF11640_consen 6 INSILRLLSSD-KIKERNKALEDLRHILSSPPRVDSLNDKQW--HSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRL 82 (155)
T ss_pred HHHHHHHHhcc-ccchHHHHHHHHHHHHcCccccccCCcchH--HHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHH
Confidence 44577788874 4678899999999888765421 0011 1123333333321 1 1111 2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCC-CCCccHHHHHHHHHHHHHhcChH
Q psy355 168 IKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED-ALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 168 ~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~-~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
..++.++..++...........=..++..+.++|..++ ..-.++-.....+|..|+...+.
T Consensus 83 ~~~a~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~~~~ 144 (155)
T PF11640_consen 83 SSCASALRLFVEKSNSRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSYPPH 144 (155)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCCChH
Confidence 35566666555432222212222245667777777661 01123445566677777666653
No 399
>KOG1788|consensus
Probab=29.84 E-value=7.3e+02 Score=27.23 Aligned_cols=147 Identities=17% Similarity=0.184 Sum_probs=91.2
Q ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHH
Q psy355 107 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVK 185 (285)
Q Consensus 107 g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~ 185 (285)
.++..|-..+-...++..+...+.-+-.|-..+|.+....-+.--+|.++.-|...+..+|.+..-+|-+.+.. +---.
T Consensus 466 eAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPe 545 (2799)
T KOG1788|consen 466 EAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPE 545 (2799)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcH
Confidence 35666666544446677888888888888777888775555667889999889888888888888777765443 11111
Q ss_pred HHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHH---ccChHhhHHHHH
Q psy355 186 QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEK---HAGNEVYHKELE 262 (285)
Q Consensus 186 ~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~---l~~~~e~~~~~~ 262 (285)
+.+ -.||-+|+.+ -...+....+.....+.....+-....|. .++.+.|...+++ +.+.++|....+
T Consensus 546 qEL------lSLCvLLqqp--IssalkhtIlsffvKLIsfDqqyKkvlRE--VGvLevLqddlkqhkll~gpdqysgvse 615 (2799)
T KOG1788|consen 546 QEL------LSLCVLLQQP--ISSALKHTILSFFVKLISFDQQYKKVLRE--VGVLEVLQDDLKQHKLLRGPDQYSGVSE 615 (2799)
T ss_pred HHH------HHHHHHhcch--hhHHHHHHHHHHHHHHhhHHHHHHHHHHH--hhHHHHHHHHHHHhhhccCcchhhhHHH
Confidence 222 2577888876 23455555666666666555433222221 3555666665553 455556666655
Q ss_pred H
Q psy355 263 H 263 (285)
Q Consensus 263 ~ 263 (285)
.
T Consensus 616 h 616 (2799)
T KOG1788|consen 616 H 616 (2799)
T ss_pred H
Confidence 3
No 400
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=29.76 E-value=2.9e+02 Score=22.10 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhhCCHHH---------HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhc
Q psy355 79 PELRWRAAETVADIVQNNPFS---------QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKR 149 (285)
Q Consensus 79 ~~vr~~A~~~lg~~a~nn~~~---------q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~ 149 (285)
...+.-++++|-++-.++... -..+++....|.|++.+.++ +..+-..++..+..+........+.=++
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~-~~~i~~~slri~~~l~~~~~~~Lk~ele- 113 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS-DFPIFSRSLRIFLTLLSRFRSHLKLELE- 113 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345556666666665544321 11255677888899888874 4788888888888888654433221111
Q ss_pred CcHHHHHH-hhccCc--HHHHHHHHHHHHHHhcCCchHHHHH
Q psy355 150 DGFSVLLR-CIQSKK--EKLVIKSCFLIACLCTDNNQVKQVL 188 (285)
Q Consensus 150 ~gi~~L~~-~L~~~~--~~v~~ka~~~l~~L~~~~~~~~~~l 188 (285)
--++.++. .+.++. ..-|.-+.-++..++....-..+..
T Consensus 114 ~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf 155 (168)
T PF12783_consen 114 VFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLF 155 (168)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 12233333 566543 4666778888888887543333333
No 401
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=29.47 E-value=4.4e+02 Score=24.08 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=34.7
Q ss_pred hcCcHHHHHHhhccCcHHHHH------------------HHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCc
Q psy355 148 KRDGFSVLLRCIQSKKEKLVI------------------KSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT 209 (285)
Q Consensus 148 ~~~gi~~L~~~L~~~~~~v~~------------------ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~ 209 (285)
..||+..+..+|..-+..... +-.|.+.+|..-++...+.+++.=--+.|+-.|+.. +.
T Consensus 200 ~~~g~~~~a~Iln~~~~~~~~~il~~L~~~d~~~a~~Ir~~mF~Fedl~~l~~~~l~~ll~~v~~~~L~~ALkga---~~ 276 (339)
T PRK05686 200 KMGGVKTVAEILNNLDRQTEKTILESLEEEDPELAEKIKDLMFVFEDLVDLDDRSIQRLLREVDNDVLALALKGA---SE 276 (339)
T ss_pred ccCcHHHHHHHHhcCCchHHHHHHHHHHhhCHHHHHHHHHHhcCHHHHhcCCHHHHHHHHHhCCHHHHHHHHCCC---CH
Confidence 346777776666643333322 234444444444444344444433344555555555 55
Q ss_pred cHHHHHHHHH
Q psy355 210 EMNEHLLSAL 219 (285)
Q Consensus 210 ~~~e~al~aL 219 (285)
.++++.+..+
T Consensus 277 ~~~~~il~nm 286 (339)
T PRK05686 277 ELREKFLSNM 286 (339)
T ss_pred HHHHHHHHhc
Confidence 5666655544
No 402
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=29.20 E-value=4.6e+02 Score=24.20 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=39.2
Q ss_pred hcCcHHHHHHhhccCcHHH------------------HHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCc
Q psy355 148 KRDGFSVLLRCIQSKKEKL------------------VIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDT 209 (285)
Q Consensus 148 ~~~gi~~L~~~L~~~~~~v------------------~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~ 209 (285)
..||+.....+|..-+... .++=.|.+-+|..-..-..+.+....-=..|.-.|+.. ++
T Consensus 200 ~~gg~~~~aeIlN~~d~~~e~~il~~l~~~~~~la~~I~~kmF~Fediv~ldd~~iq~lL~~v~~~~La~aLkg~---~~ 276 (339)
T COG1536 200 KLGGIKAAAEILNLLDRGTEKTILESLEEEDPELAEEIKEKMFVFEDIVLLDDRSIQRLLREVDKEDLAIALKGA---SE 276 (339)
T ss_pred ccccHhHHHHHHHhcchhHHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHhccHHHHHHHHHHcCHHHHHHHHcCC---CH
Confidence 4577776666665433211 22334666666665555555555544555666666666 77
Q ss_pred cHHHHHHHHH
Q psy355 210 EMNEHLLSAL 219 (285)
Q Consensus 210 ~~~e~al~aL 219 (285)
.++++.++.+
T Consensus 277 ~lrekilsnm 286 (339)
T COG1536 277 ELREKILSNM 286 (339)
T ss_pred HHHHHHHHhc
Confidence 7777766544
No 403
>KOG0803|consensus
Probab=29.15 E-value=8.3e+02 Score=27.12 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hhcCCCHHHHHHHHHHHHHHhhC
Q psy355 22 AELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQN 95 (285)
Q Consensus 22 ~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~n 95 (285)
..++.+++.|...+. --|+.||.+|.+++++.|.-...--.+-++.++. +..+++..||...-.++..+.+.
T Consensus 41 sel~~I~kkL~KkD~--~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~ 113 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDE--TTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK 113 (1312)
T ss_pred HHHHHHHHHHhccCh--HHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 357777777777654 5789999999999998774444333566776665 78899999999999999998865
No 404
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=29.11 E-value=5.6e+02 Score=26.16 Aligned_cols=68 Identities=16% Similarity=0.084 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhCChHhHHHHHh-cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC--chHHHHHHHC
Q psy355 124 VQVKSLYAVSCLVRDNEECLKEFIK-RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN--NQVKQVLLSM 191 (285)
Q Consensus 124 v~~~a~~ALs~l~r~~~~~~~~f~~-~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~--~~~~~~l~~~ 191 (285)
++......|..++.-.|.....++. .+....++.++=+++..+.+.|.-+|....... .+..+.+.+.
T Consensus 497 ~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~ 567 (727)
T PF12726_consen 497 ITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQS 567 (727)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 4444555666666667777777664 567789999999999999999999999887542 2334444443
No 405
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=29.10 E-value=67 Score=20.21 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhC
Q psy355 83 WRAAETVADIVQN 95 (285)
Q Consensus 83 ~~A~~~lg~~a~n 95 (285)
..++.++||+++|
T Consensus 6 DLsLMvLGN~vTn 18 (44)
T PF07208_consen 6 DLSLMVLGNMVTN 18 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 3578899999876
No 406
>KOG1086|consensus
Probab=28.57 E-value=5.4e+02 Score=24.78 Aligned_cols=148 Identities=15% Similarity=0.171 Sum_probs=76.8
Q ss_pred HHHHHHHHHH---HhhCChHhHHHHHh-cCcHHHHH---Hhhcc------CcHHHHHHHHHHHHHHhcCCc------hHH
Q psy355 125 QVKSLYAVSC---LVRDNEECLKEFIK-RDGFSVLL---RCIQS------KKEKLVIKSCFLIACLCTDNN------QVK 185 (285)
Q Consensus 125 ~~~a~~ALs~---l~r~~~~~~~~f~~-~~gi~~L~---~~L~~------~~~~v~~ka~~~l~~L~~~~~------~~~ 185 (285)
...|++||.. +.+++- +.|-+ .|-+.+|- +.++. .+.+++.+..-++..-+.+-| +.-
T Consensus 59 e~EAl~altvLe~cmkncG---ekfH~evgkfrFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~lpe~~KikdaY 135 (594)
T KOG1086|consen 59 EWEALQALTVLEYCMKNCG---EKFHEEVGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVSLPEEPKIKDAY 135 (594)
T ss_pred HHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheecCcccchHHHHH
Confidence 3455555543 444432 33443 34455544 44432 368999999888877655422 233
Q ss_pred HHHHHCCcHHH-------------------------------HHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcc
Q psy355 186 QVLLSMGMVEQ-------------------------------MCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCR 234 (285)
Q Consensus 186 ~~l~~~g~v~~-------------------------------L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~ 234 (285)
+.+-.+|+|.. |..||++. .++-.+.|-..+.++++...+......
T Consensus 136 qmLKkqgIik~DP~lp~d~~~~p~ppP~pkssvFddEEksklL~rLLkSn---~PeDLqaANkLIK~lVkeee~k~eKis 212 (594)
T KOG1086|consen 136 QMLKKQGIIKSDPKLPVDETPVPAPPPRPKSSVFDDEEKSKLLARLLKSN---HPEDLQAANKLIKTLVKEEEHKLEKIS 212 (594)
T ss_pred HHHHhcCcccCCCCCCCCCccCCCCCCCCCccccCcHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455565532 56667766 666677777777777766654322110
Q ss_pred cCcccH------HHHHHHHH-HHccC------hH-hhHHHHHHHHHHHHHhcCCCCch
Q psy355 235 LEPLNL------KFKLNFIK-EKHAG------NE-VYHKELEHVNSVLTEVFEEDSLE 278 (285)
Q Consensus 235 ~~~~~l------~~~l~~~~-~~l~~------~~-e~~~~~~~~~~il~~~f~~~~~~ 278 (285)
.....+ ...+++-+ ..-+. .+ --++.|+.|.++=.++|.--+|+
T Consensus 213 kR~~aleev~n~vk~l~em~l~~s~eg~a~pd~E~~lq~v~~~ce~lr~tlfrlaset 270 (594)
T KOG1086|consen 213 KRVKALEEVNNNVKLLEEMLLDYSQEGNASPDNELLLQEVYNRCEQLRPTLFRLASET 270 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 000011 11111110 01111 11 24678889999988988755443
No 407
>PF04362 Iron_traffic: Bacterial Fe(2+) trafficking; InterPro: IPR007457 The protein represented by this entry, YggX, serves to protect Fe-S clusters from oxidative damage []. The effect is two-fold: proteins that rely on Fe-S clusters do not become inactivated, and the release of free iron and hydrogen peroxide--a DNA damaging agent--is prevented. These observations are consistent with the hypothesis that YggX chelates free iron, and recent experiments show that YggX can indeed bind Fe(II) in vitro and in vivo []. Furthermore, YggX has a positive effect on the action of at least one Fe(II)-responsive protein. The combined actions of YggX is reminiscent of iron trafficking proteins [], and YggX is therefore proposed to play a role in Fe(II) trafficking []. In Escherichia coli, YggX was shown to be under the transcriptional control of the redox-sensing SoxRS system []. ; GO: 0005506 iron ion binding; PDB: 1YHD_A 1T07_A 1XS8_A.
Probab=28.52 E-value=56 Score=23.87 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=15.2
Q ss_pred CCHHhHHHHHHHHHHhc
Q psy355 1 MNEANRGFLLDALNSMM 17 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~ 17 (285)
||++.|+||++-|+.+.
T Consensus 58 ~dp~~R~~L~~qM~~Fl 74 (88)
T PF04362_consen 58 MDPEARKFLEEQMEKFL 74 (88)
T ss_dssp TSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 68999999999999885
No 408
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=28.32 E-value=2.2e+02 Score=23.46 Aligned_cols=63 Identities=17% Similarity=0.353 Sum_probs=42.9
Q ss_pred cCcHHHHHHhhcc---CcHHHHHHHHHHHHHHhcCCc------hHHHHHHHCCcHHHHHHhcccCCCCCccHHHH
Q psy355 149 RDGFSVLLRCIQS---KKEKLVIKSCFLIACLCTDNN------QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEH 214 (285)
Q Consensus 149 ~~gi~~L~~~L~~---~~~~v~~ka~~~l~~L~~~~~------~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~ 214 (285)
.+=+..++..+.+ .....+..+..+|-.|+.+.+ ..+..+...|+.+.+-.+-... ++.+...
T Consensus 20 ~~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~R~~lr~e~~~~GL~~il~~l~~~~---~~~L~~Q 91 (197)
T PF06367_consen 20 RGRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNFRVHLRNEFERLGLLDILEKLRNLE---DDDLQEQ 91 (197)
T ss_dssp S-TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTTHHHHHHHHTTS-----HHHHHH
T ss_pred cccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCcHHHHHHHHhcc---hHHHHHH
Confidence 3446678888874 468899999999999988865 4677888889887777765554 5555544
No 409
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=28.31 E-value=2.4e+02 Score=20.52 Aligned_cols=62 Identities=21% Similarity=0.226 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHHhhC----CHHHHHHHHhcCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 77 SDPELRWRAAETVADIVQN----NPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 77 ~~~~vr~~A~~~lg~~a~n----n~~~q~~v~~~g~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
++-.+|..|+.+|+.++.. ++..+. -++..|.+.+.+ ..+...+--|+..|+.+ | +.+.+.+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~-----Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l--G-~~~vr~~ 84 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQP-----RITRTLLKALLDPKKPLGTHYGAIVGLSAL--G-PEAVRAL 84 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHH-----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHH--H-HHHHHHh
Confidence 3568999999999999975 233333 356667766653 34567888888988888 3 3444444
No 410
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=28.18 E-value=4.9e+02 Score=24.13 Aligned_cols=152 Identities=17% Similarity=0.207 Sum_probs=78.7
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHh---hCCHHHHHHHHh-------cC-----cHHHHHHhhccCCCHHHHHHHHHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIV---QNNPFSQNFIIQ-------TD-----FLNLLLTSIEHDSNTTVQVKSLYA 131 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a---~nn~~~q~~v~~-------~g-----~l~~L~~LL~~~~~~~v~~~a~~A 131 (285)
+|.++..+-|....+|..|..+.-.+. ..+......+.+ .| ..+.|-.++.. ++...-.--+|.
T Consensus 177 ~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~-~~~~~~a~~iW~ 255 (372)
T PF12231_consen 177 FPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKS-KDEYKLAMQIWS 255 (372)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhC-cCCcchHHHHHH
Confidence 467777777888888988665554443 233333333322 12 33345566664 222333334454
Q ss_pred HHHHhhCChH-hHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhc---CCchHHHHHHHCCcHHHHHHhcccCCCC
Q psy355 132 VSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT---DNNQVKQVLLSMGMVEQMCVLIDIEDAL 207 (285)
Q Consensus 132 Ls~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~---~~~~~~~~l~~~g~v~~L~~lL~~~~~~ 207 (285)
.=-..-+++. ....++ ..=+.+.-.++.++++.+|..|-.+-..++. .++......++. .+.|+...++.. .
T Consensus 256 ~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~--~ 331 (372)
T PF12231_consen 256 VVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRRE--K 331 (372)
T ss_pred HHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCcc--c
Confidence 4333223332 111111 1234555668889998888888666555543 222222233322 345665556654 1
Q ss_pred Cc----cHHHHHHHHHHHHH
Q psy355 208 DT----EMNEHLLSALASLI 223 (285)
Q Consensus 208 d~----~~~e~al~aL~~l~ 223 (285)
.. .++..++..+.+++
T Consensus 332 ~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 332 SSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred cccccHHHHHHHHHHHhchH
Confidence 22 66777887777776
No 411
>KOG1791|consensus
Probab=27.15 E-value=5.9e+02 Score=28.67 Aligned_cols=187 Identities=16% Similarity=0.035 Sum_probs=100.1
Q ss_pred HH-HHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC---CCH-HHHHHHHH-H
Q psy355 58 AN-DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD---SNT-TVQVKSLY-A 131 (285)
Q Consensus 58 a~-~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~---~~~-~v~~~a~~-A 131 (285)
++ -|+..|...++...+.|.++.+|..|+|++.-.-..-....+.....=.+-.++.+.++. +++ -+...+++ |
T Consensus 1431 ~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A 1510 (1758)
T KOG1791|consen 1431 IRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIA 1510 (1758)
T ss_pred cchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHH
Confidence 44 789999999999999999999999999988765533222112222222344455555542 121 11222221 2
Q ss_pred H-HHHhhCChH-----h------HHHHHhcCcHHHHHHhhccCcHH---HHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355 132 V-SCLVRDNEE-----C------LKEFIKRDGFSVLLRCIQSKKEK---LVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 196 (285)
Q Consensus 132 L-s~l~r~~~~-----~------~~~f~~~~gi~~L~~~L~~~~~~---v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~ 196 (285)
. +.++- .|. . ....++.-|+|.+-+.+.+..+. .|.....+++...... ...+..+..+....
T Consensus 1511 ~~~~ill-~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~-~D~ql~~~~~~~~~ 1588 (1758)
T KOG1791|consen 1511 FFSDILL-VPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSC-PDYQLLQIRNIFET 1588 (1758)
T ss_pred HHHHHHc-CCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCc-hhhhHHhhcCcceE
Confidence 2 23332 221 1 22344567888888888876443 4444445555544444 45566677788877
Q ss_pred HHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHH
Q psy355 197 MCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKE 249 (285)
Q Consensus 197 L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 249 (285)
+.....++. -+...+.-.+.+|.+-++....+.+--.++ ++..+|...+.
T Consensus 1589 ~lsf~sS~l-~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~--Gl~sWi~niI~ 1638 (1758)
T KOG1791|consen 1589 LLSFYSSPL-ASEESKRLILATLQKGVKFPFYAYEMLEVP--GLFSWILNIIP 1638 (1758)
T ss_pred eehhhcchh-HHHHHHHHHHHHHHhcCCCcHHHHHHHhcc--cHHHHHHHhcc
Confidence 777776640 012222334444444444433332222222 45567765543
No 412
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=26.71 E-value=3.5e+02 Score=21.93 Aligned_cols=79 Identities=8% Similarity=0.071 Sum_probs=46.6
Q ss_pred hcCcHHHHHHhhc-cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 148 KRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 148 ~~~gi~~L~~~L~-~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
..|++...+..+. ..|..+......++.+....+.=...... -++|.+..+|.+. .......++.+|..|++..
T Consensus 26 ~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~--~lLP~i~~LL~Sk---~E~~i~~aL~~L~~i~~~f 100 (164)
T PF13925_consen 26 RRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCV--DLLPLIEELLQSK---YESYISVALEMLRSILKKF 100 (164)
T ss_pred hcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHH--HHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHH
Confidence 3444443333322 24555555555555433333221122222 2668888999998 8999999999999999887
Q ss_pred hHHHh
Q psy355 227 TEAQS 231 (285)
Q Consensus 227 ~~~~~ 231 (285)
.+.+.
T Consensus 101 ~~~I~ 105 (164)
T PF13925_consen 101 GPVIR 105 (164)
T ss_pred HHHHH
Confidence 65443
No 413
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=26.31 E-value=2.9e+02 Score=20.83 Aligned_cols=68 Identities=15% Similarity=0.280 Sum_probs=43.3
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh-hccCcHHH-HHHHHHHHHHHhcCC
Q psy355 108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC-IQSKKEKL-VIKSCFLIACLCTDN 181 (285)
Q Consensus 108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~-L~~~~~~v-~~ka~~~l~~L~~~~ 181 (285)
.+|.+.+.|...+.++.+..+..-++-++...+-..+ + +..+++. +++..... ++.+..++..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~-~-----l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE-V-----LNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH-H-----HHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 5788888898556778888888888888776544332 2 2223332 33322222 477888888888664
No 414
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=25.81 E-value=3.6e+02 Score=21.76 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=31.5
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
.++.|+++|+++.+..+|.+++-.||.|-.=.|...+.+
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~ 49 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSI 49 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcc
Confidence 577889999988789999999999999876666655533
No 415
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=25.69 E-value=1.2e+02 Score=22.39 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=34.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHh
Q psy355 10 LDALNSMMVNVGAELEKIIKTLKENQD---QKDICIGALDNLSDY 51 (285)
Q Consensus 10 ~~al~~~~~d~~~~mk~~l~~l~~~~~---~~~~~~~al~~L~~l 51 (285)
++.+++|+++.+++|+.+++.=.=|+. |++++..+++...-+
T Consensus 2 ~~li~~mtPevY~rL~~AVElGKWpDG~~LT~eQre~~mQaVm~y 46 (93)
T PF07023_consen 2 EQLIDSMTPEVYERLKQAVELGKWPDGRALTPEQRESCMQAVMLY 46 (93)
T ss_pred hHHHHhCCHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHH
Confidence 467889999999999999987666664 478899998877654
No 416
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=25.34 E-value=43 Score=24.54 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=12.9
Q ss_pred CHHhHHHHHHHHHHh
Q psy355 2 NEANRGFLLDALNSM 16 (285)
Q Consensus 2 ~~e~~~~L~~al~~~ 16 (285)
|+|..+||+.|+..=
T Consensus 18 SkeTyeWL~aal~RK 32 (93)
T PF07315_consen 18 SKETYEWLEAALKRK 32 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhCc
Confidence 688999999999764
No 417
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=25.26 E-value=3.9e+02 Score=22.08 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=33.7
Q ss_pred cCcHHHHHHHHHHHHHHhcCC----------chHHHHH-----------HHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355 161 SKKEKLVIKSCFLIACLCTDN----------NQVKQVL-----------LSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 219 (285)
Q Consensus 161 ~~~~~v~~ka~~~l~~L~~~~----------~~~~~~l-----------~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL 219 (285)
-.-.++|..|..++..+.... +...+.+ ......+.++.+|..+ .++...+.+|
T Consensus 18 EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~~-----~y~~~ll~Gl 92 (193)
T PF12612_consen 18 EKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLLDLP-----EYRYSLLSGL 92 (193)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHhccH-----HHHHHHHhHH
Confidence 345677777777777776433 1112211 1223556677777644 6677777666
Q ss_pred HHHHhcC
Q psy355 220 ASLIKDS 226 (285)
Q Consensus 220 ~~l~~~~ 226 (285)
..=+.+.
T Consensus 93 v~S~G~~ 99 (193)
T PF12612_consen 93 VVSAGGL 99 (193)
T ss_pred HhcCCCC
Confidence 5544443
No 418
>KOG1992|consensus
Probab=24.98 E-value=8.2e+02 Score=25.68 Aligned_cols=142 Identities=13% Similarity=0.169 Sum_probs=90.7
Q ss_pred HHHHHhhh-c--CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC-CHHHHHHHHHHHHHHhh-CChH
Q psy355 67 LPVLQPLL-E--GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSLYAVSCLVR-DNEE 141 (285)
Q Consensus 67 ~~~Lv~lL-~--s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~-~~~v~~~a~~ALs~l~r-~~~~ 141 (285)
+..|..+| + +|+|.+|..|=++|.....+ .|..-.|++++.++. ++.+|..|.-+.-|-++ ++.+
T Consensus 4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q----------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~ 73 (960)
T KOG1992|consen 4 LETLANYLLQTLSPDPSVRKPAERALRSLEGQ----------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIP 73 (960)
T ss_pred HHHHHHHHHhcCCCCCccCchHHHHHHHhccC----------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCc
Confidence 34455544 3 46799999999998866543 344455788888754 78999999999999887 3333
Q ss_pred hHHH---HHhcC---cHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHH
Q psy355 142 CLKE---FIKRD---GFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEH 214 (285)
Q Consensus 142 ~~~~---f~~~~---gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~ 214 (285)
+-.. +.+.. .-..++.++-+....+|..-.-+|+.+... .|+-... .++-|++-|.++ |-.+..-
T Consensus 74 ~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWpt-----Ll~dL~~~ls~~---D~~~~~g 145 (960)
T KOG1992|consen 74 AEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPT-----LLPDLVARLSSG---DFNVING 145 (960)
T ss_pred CCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHH-----HHHHHHhhcccc---chHHHHH
Confidence 2221 22111 224667888888889998888888887755 3433322 346666667665 5555555
Q ss_pred HHHHHHHHHhcC
Q psy355 215 LLSALASLIKDS 226 (285)
Q Consensus 215 al~aL~~l~~~~ 226 (285)
++.+-.+|.+..
T Consensus 146 VL~tahsiFkr~ 157 (960)
T KOG1992|consen 146 VLVTAHSIFKRY 157 (960)
T ss_pred HHHHHHHHHHhc
Confidence 555555555544
No 419
>PF03752 ALF: Short repeats of unknown function; InterPro: IPR005506 This set of repeats is found in a small family of secreted proteins of no known function, which may be involved in signal transduction.
Probab=24.97 E-value=1.8e+02 Score=17.95 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=26.6
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC
Q psy355 70 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD 107 (285)
Q Consensus 70 Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g 107 (285)
++.++.++-|.||..|-.+|- .+.|..-..|+..|
T Consensus 4 v~~l~~~gG~~vr~AA~~AL~---~G~~~~l~~FL~~G 38 (43)
T PF03752_consen 4 VVQLLASGGPAVRAAAQAALD---AGTPEALREFLETG 38 (43)
T ss_pred HHHHHHcCCHHHHHHHHHHHH---hCCHHHHHHHHHHh
Confidence 466788889999999999883 26677666777666
No 420
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=24.95 E-value=5.4e+02 Score=23.55 Aligned_cols=13 Identities=15% Similarity=0.008 Sum_probs=7.4
Q ss_pred cCcHHHHHHhhcc
Q psy355 149 RDGFSVLLRCIQS 161 (285)
Q Consensus 149 ~~gi~~L~~~L~~ 161 (285)
.||......+|..
T Consensus 196 ~~G~~~aa~ILn~ 208 (334)
T PRK07194 196 VIGVKQAADIINR 208 (334)
T ss_pred CCCHHHHHHHHHh
Confidence 3566666665554
No 421
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=24.37 E-value=6.3e+02 Score=24.17 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhc
Q psy355 165 KLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLI 201 (285)
Q Consensus 165 ~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL 201 (285)
++...+-.++.||+.+.... -++..|+.+|
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL 259 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDIL 259 (464)
T ss_pred ccchhHHHHHHHHHcCccHH-------HHHHHHHHHH
Confidence 55555666777777653211 2455666666
No 422
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=23.79 E-value=2.3e+02 Score=27.10 Aligned_cols=100 Identities=11% Similarity=0.158 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhCChHh-HHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHh
Q psy355 122 TTVQVKSLYAVSCLVRDNEEC-LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVL 200 (285)
Q Consensus 122 ~~v~~~a~~ALs~l~r~~~~~-~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~l 200 (285)
...|..|+.||+.+++..+.. ...+.+ +.|+.+|+++..--|.-|+.+|...+.........-.-..+.+.|...
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 356778889999988875332 222221 268999999988888888888888876532111000012345677777
Q ss_pred cccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 201 IDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 201 L~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
|..+ ....+.|.+ ..+..+-+.|..
T Consensus 177 L~~~--~~~~Y~El~-~~l~~lr~ec~~ 201 (441)
T PF12054_consen 177 LENP--EPPYYDELV-PSLKRLRTECQQ 201 (441)
T ss_pred HcCC--CCCCHHHHH-HHHHHHHHHHHH
Confidence 7754 133444443 233444444443
No 423
>KOG2175|consensus
Probab=23.60 E-value=4.1e+02 Score=25.59 Aligned_cols=104 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHhhcCcchHHH------HHHcCCHHHHHhhhcCCCHHHHHHH
Q psy355 15 SMMVNVGAELEKIIKTLKENQDQK---DICIGALDNLSDYVCSIDYAND------FLKMGGLPVLQPLLEGSDPELRWRA 85 (285)
Q Consensus 15 ~~~~d~~~~mk~~l~~l~~~~~~~---~~~~~al~~L~~lv~~~dna~~------~~~~Gg~~~Lv~lL~s~~~~vr~~A 85 (285)
++..++-..+-+....++.++.++ +..+.-+++...+...++.-.. |+..|.++.+-..+.+++..+|..+
T Consensus 154 ~~lqed~~~l~eLf~~l~~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~i~~~le~~~~~~d~~~r~~~ 233 (458)
T KOG2175|consen 154 SLLQEDEKFLIELFARLRSESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKGILDALEYVLKMPDTQVRSAA 233 (458)
T ss_pred hhhhcCchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhHHHHHHHhcCCcchhhHHH
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCcHHH-----HHHhhcc
Q psy355 86 AETVADIVQNNPFSQNFIIQTDFLNL-----LLTSIEH 118 (285)
Q Consensus 86 ~~~lg~~a~nn~~~q~~v~~~g~l~~-----L~~LL~~ 118 (285)
..+++.+..-+|..-..+.......+ +++++.+
T Consensus 234 ~di~~~~ve~~~~~i~~~~~~~~~~~~~~~~~~nl~~s 271 (458)
T KOG2175|consen 234 TDILARLVEMSPSMIRSFTLGEALDPDDEKLLLNLAIS 271 (458)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhhcCchhhHHHHHHHHH
No 424
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.31 E-value=5.9e+02 Score=23.41 Aligned_cols=76 Identities=9% Similarity=0.164 Sum_probs=41.9
Q ss_pred cHHHHHHhhccC-----CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc-----cCc-----HHHHHHHHH
Q psy355 108 FLNLLLTSIEHD-----SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ-----SKK-----EKLVIKSCF 172 (285)
Q Consensus 108 ~l~~L~~LL~~~-----~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~-----~~~-----~~v~~ka~~ 172 (285)
.+|.++..+... ++...-...+.-.+++..+..--.+-.+ ...+|.++.+|- +.+ ..+|.-|++
T Consensus 231 LvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~-hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ 309 (450)
T COG5095 231 LVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYL-HQLMPSILTCLIAKKLGNVPDDHEHYALRDVAAD 309 (450)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHH-HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 567777777631 2334444555566666654322111111 233455555532 222 359999999
Q ss_pred HHHHHhcCCchH
Q psy355 173 LIACLCTDNNQV 184 (285)
Q Consensus 173 ~l~~L~~~~~~~ 184 (285)
++.+.+...++.
T Consensus 310 ll~yV~~~F~~~ 321 (450)
T COG5095 310 LLKYVFSNFSSS 321 (450)
T ss_pred HHHHHHhhhhHh
Confidence 999998875543
No 425
>KOG0889|consensus
Probab=23.11 E-value=7.4e+02 Score=30.49 Aligned_cols=115 Identities=21% Similarity=0.289 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHH-HcCCHHHHHhhhc---------CCCHHHHHHHHHHHHH
Q psy355 22 AELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFL-KMGGLPVLQPLLE---------GSDPELRWRAAETVAD 91 (285)
Q Consensus 22 ~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~-~~Gg~~~Lv~lL~---------s~~~~vr~~A~~~lg~ 91 (285)
+.+.+...-|.+.+.+++.|..-+.++.+.+|++-....+. =.--+|.++..|. ++..++|...+.+|-.
T Consensus 5 k~l~q~~~~l~d~~~~~~~klk~~~E~~~~le~~~~~~~~~~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r 84 (3550)
T KOG0889|consen 5 KELEQRSRRLVDVNLPIESKLKMLVEIRDFLENLFSPESYLFLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNR 84 (3550)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHh
Confidence 44455566777888778899999999998888766555544 1223566665554 3445799999999998
Q ss_pred HhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355 92 IVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 92 ~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~ 140 (285)
+.. ++..+... .+.+..+.++|..+ +++...-|+-+|..+-|.+.
T Consensus 85 ~~~-~e~~~~~~--~~~~~~~~~vl~~d-Neen~~l~lkii~~l~r~f~ 129 (3550)
T KOG0889|consen 85 LPH-NEVFKPFS--QELLKVLMRVLTND-NEENAILCLKIITDLFRQFK 129 (3550)
T ss_pred ccc-HHHHHHHH--HHHHHHHHHHHhcc-cchhhhhHHHHHHHHHHhhc
Confidence 884 55555544 56899999999974 44555556666666655443
No 426
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=22.75 E-value=5.6e+02 Score=25.83 Aligned_cols=100 Identities=10% Similarity=0.113 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHH--HHHHHCCcHHH
Q psy355 119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK--QVLLSMGMVEQ 196 (285)
Q Consensus 119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~--~~l~~~g~v~~ 196 (285)
+.++.+|..+..+++--+...|. .|+...|+...--.|+..+..+|.-..-.+-+|+...|..- +.+++ .+-..
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e-RFk~r 361 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE-RFKDR 361 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH-HHHHH
Confidence 35678999999999987666555 46666677777778888889999999999999998876432 23332 35556
Q ss_pred HHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 197 MCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 197 L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
++..+..+ ..-+|-+++..+..+...
T Consensus 362 ILE~~r~D---~d~VRi~sik~l~~lr~l 387 (740)
T COG5537 362 ILEFLRTD---SDCVRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHhhc---cchhhHHHHHHHHHHHHh
Confidence 66777765 333777776666555433
No 427
>KOG1992|consensus
Probab=22.65 E-value=9.1e+02 Score=25.37 Aligned_cols=150 Identities=11% Similarity=0.089 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC----CCHHHHHHHHHHHHHHhhCC--h------HhHHHHH
Q psy355 80 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD----SNTTVQVKSLYAVSCLVRDN--E------ECLKEFI 147 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~----~~~~v~~~a~~ALs~l~r~~--~------~~~~~f~ 147 (285)
.+|..-|..+.--++-.+++=+-++. ..+...|.||.+. +-+.+..+|+.-|+++++-. + ...+.+.
T Consensus 262 ~lka~ICEi~~LY~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~ 340 (960)
T KOG1992|consen 262 KLKAQICEIFNLYATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQIC 340 (960)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHH
Confidence 57788888888888887776554432 2556667777642 23467788888898888641 1 1122222
Q ss_pred ------------------hcCcHHHHHHhhccCcHHHHH-HHHHHHHHHhcCCchHHHHHHHCCcHHHHHH-hcccCCCC
Q psy355 148 ------------------KRDGFSVLLRCIQSKKEKLVI-KSCFLIACLCTDNNQVKQVLLSMGMVEQMCV-LIDIEDAL 207 (285)
Q Consensus 148 ------------------~~~gi~~L~~~L~~~~~~v~~-ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~-lL~~~~~~ 207 (285)
+-+-+..+.+-|..+|...|+ -|+-++..|+.........++. +.+..++. .-..| +.
T Consensus 341 e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~-~~v~~~l~~y~~nP-S~ 418 (960)
T KOG1992|consen 341 EKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS-SEVQRLLDQYSKNP-SG 418 (960)
T ss_pred HhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHhccCC-Cc
Confidence 234556667777777766555 5567788888776433333332 22333332 22222 34
Q ss_pred CccHHHHHHHHHHHHHhcChHHHhh
Q psy355 208 DTEMNEHLLSALASLIKDSTEAQSL 232 (285)
Q Consensus 208 d~~~~e~al~aL~~l~~~~~~~~~~ 232 (285)
+-.-+..+.....+++..+..+...
T Consensus 419 nWk~kd~aiyL~talaik~~t~~~G 443 (960)
T KOG1992|consen 419 NWKKKDRAIYLVTALAIKGQTAKHG 443 (960)
T ss_pred cccccchhhhhhHHHHhhcchhhcc
Confidence 5666778888888888776544433
No 428
>COG1992 Uncharacterized conserved protein [Function unknown]
Probab=22.61 E-value=13 Score=30.85 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHH-HHHhhhc------CCCHHHHHHHHHHHHHHh
Q psy355 21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLP-VLQPLLE------GSDPELRWRAAETVADIV 93 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~-~Lv~lL~------s~~~~vr~~A~~~lg~~a 93 (285)
.+.|++++.++...+. -..-.=+...+++..+.++.+.-+..|+| .++.... .+......+.|++|-++.
T Consensus 7 ~e~l~ra~~il~~~e~---f~~lIPEV~sNia~a~p~~r~~~DVaavpGRI~~~~g~~~a~g~pefGaS~H~Ar~lL~~~ 83 (181)
T COG1992 7 LEELRRAVEILERNER---FAKLIPEVGSNIAYAIPNARDLEDVAAVPGRITVIGGRPYAVGPPEFGASSHTARVLLTVM 83 (181)
T ss_pred HHHHHHHHHHHHhCch---HHhhCchhhhceeeecCCCCChhheeeccceEEEECCEEeecCCCCCCchHHHHHHHHHHH
Confidence 5667778887777553 11111234556667777888877777776 4443322 366778889999999999
Q ss_pred hCCHHHHHHH---HhcCcHHHHHHh-hc-----c-CCCHHHHHHHH-HHHHHHhhCChHhHHHHHhcC--cHHHHHHhhc
Q psy355 94 QNNPFSQNFI---IQTDFLNLLLTS-IE-----H-DSNTTVQVKSL-YAVSCLVRDNEECLKEFIKRD--GFSVLLRCIQ 160 (285)
Q Consensus 94 ~nn~~~q~~v---~~~g~l~~L~~L-L~-----~-~~~~~v~~~a~-~ALs~l~r~~~~~~~~f~~~~--gi~~L~~~L~ 160 (285)
..+|..+.++ .+...+..+-.+ +. . ....+++..-- |-+....+.....-+.+++.| |..+.+..|.
T Consensus 84 ~~~p~iraa~NIrY~~~~v~~~~~~G~~v~~~dR~~Ep~~v~~~e~~w~i~~a~~~~~~~PDVIyd~G~~GkEpmi~v~g 163 (181)
T COG1992 84 KHDPDIRAAINIRYSEEVVEALKDLGLAVSSFDRSKEPEEVEEKEGGWGIESAFRELGGAPDVIYDLGGVGKEPMIRVLG 163 (181)
T ss_pred hhCCCceEEeeecccHHHHHHHHhcCceEEEeCcccCchhhhccccchHHHHHHHhcCCCCCEEEeCCCCCcccEEEEeC
Confidence 9999866433 122344444443 11 1 01233433322 778777776554445678877 6689999999
Q ss_pred cCcHHHHHHHHHHHHH
Q psy355 161 SKKEKLVIKSCFLIAC 176 (285)
Q Consensus 161 ~~~~~v~~ka~~~l~~ 176 (285)
.+...+..|+.-++..
T Consensus 164 r~a~evv~k~l~ll~k 179 (181)
T COG1992 164 RNAVEVVEKALRLLLK 179 (181)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9888888888776654
No 429
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=21.63 E-value=3.4e+02 Score=20.09 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHH
Q psy355 120 SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCV 199 (285)
Q Consensus 120 ~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~ 199 (285)
+.+.+..-..||+.+.- ....+ +..+.+.+....+.-+--+.+++-+++.+...-........+.+.+..
T Consensus 17 S~~~I~~lt~~a~~~~~-----~a~~i-----v~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~ 86 (114)
T cd03562 17 SQPSIQTLTKLAIENRK-----HAKEI-----VEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLD 86 (114)
T ss_pred cHHHHHHHHHHHHHHHH-----HHHHH-----HHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 34577777777777752 11122 334455566656677777888888888763322333333444666776
Q ss_pred hcccCCCCCccHHHHHHHHH
Q psy355 200 LIDIEDALDTEMNEHLLSAL 219 (285)
Q Consensus 200 lL~~~~~~d~~~~e~al~aL 219 (285)
..... +++++++....+
T Consensus 87 ~~~~~---~~~~r~kl~rl~ 103 (114)
T cd03562 87 AYEKV---DEKTRKKLERLL 103 (114)
T ss_pred HHHhC---CHHHHHHHHHHH
Confidence 66666 788887766654
No 430
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=21.57 E-value=5.3e+02 Score=28.89 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=50.9
Q ss_pred HhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhc
Q psy355 157 RCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLC 233 (285)
Q Consensus 157 ~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~ 233 (285)
.+|.+++..++.-++.+...+...... ..++.+|..|+..+.++ ...-...||.+|..|+..++..+..+
T Consensus 442 ~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg---~~~ev~~aL~vL~~L~~~~~~~l~~f 511 (1426)
T PF14631_consen 442 SLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSG---NSQEVDAALDVLCELAEKNPSELQPF 511 (1426)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 356788899999998888888777543 23345778888888776 55556799999999999998877655
No 431
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=21.52 E-value=3.8e+02 Score=27.96 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHH
Q psy355 21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS 99 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~ 99 (285)
.++..+.++.|.++...+ ....++-|.+-+-. .|.| ..+|.+-+..+++==.+...--+..|...||++..+-
T Consensus 24 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~pgvd~a-a~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~--- 97 (844)
T TIGR00117 24 ANQMAALVELLKNPPAGE--EEFLLDLLTNRVPPGVDEA-AYVKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGY--- 97 (844)
T ss_pred HHHHHHHHHHhcCCCCcc--HHHHHHHHHhCCCCCCChH-HHHHHHHHHHHHcCCCCCcccCHHHHHHHHhhccCCC---
Confidence 588999999998876432 22455666665544 3433 3455554444443211222223667888888877542
Q ss_pred HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355 100 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 136 (285)
Q Consensus 100 q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~ 136 (285)
-+++|+.+|.+ .+..+...|+-+|++.+
T Consensus 98 --------~~~~l~~~~~~-~~~~~a~~a~~~l~~~~ 125 (844)
T TIGR00117 98 --------NVHPLIDALDS-QDANIAPIAAKALSHTL 125 (844)
T ss_pred --------CHHHHHHHHhC-CCHHHHHHHHHHHhceE
Confidence 26778899985 46788888999998754
No 432
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=21.13 E-value=4.5e+02 Score=21.25 Aligned_cols=89 Identities=8% Similarity=0.174 Sum_probs=56.1
Q ss_pred hHHHHHHcCCHHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHH
Q psy355 57 YANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 135 (285)
Q Consensus 57 na~~~~~~Gg~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l 135 (285)
-+..+-..|.+...+.. ...+++.|..-.+.++.+..+.+.-.-+... -.+|.+..+|.+ +.+.-...|+..|-.+
T Consensus 20 ~v~~~W~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~--~lLP~i~~LL~S-k~E~~i~~aL~~L~~i 96 (164)
T PF13925_consen 20 VVRTFWRRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCV--DLLPLIEELLQS-KYESYISVALEMLRSI 96 (164)
T ss_pred HHHHHHhcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHH--HHHHHHHHHHhC-CcHHHHHHHHHHHHHH
Confidence 34445555556555553 3346777776666666644443332222222 378888899996 6678888899999999
Q ss_pred hhCChHhHHHHHh
Q psy355 136 VRDNEECLKEFIK 148 (285)
Q Consensus 136 ~r~~~~~~~~f~~ 148 (285)
++.+-+.+..+..
T Consensus 97 ~~~f~~~I~~~~~ 109 (164)
T PF13925_consen 97 LKKFGPVIRSNLS 109 (164)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766665543
No 433
>KOG3300|consensus
Probab=21.05 E-value=77 Score=24.92 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=17.7
Q ss_pred HHhHHHHHHHHHHhcCCHHHHHHH
Q psy355 3 EANRGFLLDALNSMMVNVGAELEK 26 (285)
Q Consensus 3 ~e~~~~L~~al~~~~~d~~~~mk~ 26 (285)
|+||.||++-=+.+ .-+.+.||.
T Consensus 81 ErDr~~l~~lrkn~-eeEaeiMKd 103 (146)
T KOG3300|consen 81 ERDRRFLSELRKNL-EEEAEIMKD 103 (146)
T ss_pred HHHHHHHHHHHHhH-HHHHHHHcc
Confidence 67899998877777 467777773
No 434
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=20.75 E-value=3e+02 Score=26.98 Aligned_cols=123 Identities=12% Similarity=0.139 Sum_probs=78.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC---cchHHHH--HHcCCHHH---------HHhhh
Q psy355 9 LLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCS---IDYANDF--LKMGGLPV---------LQPLL 74 (285)
Q Consensus 9 L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~---~dna~~~--~~~Gg~~~---------Lv~lL 74 (285)
|.+||..+..=+.+.+++--..|...+........+|+.+....+. -+.|..+ ...||+|. .-.++
T Consensus 171 ~~k~~~~l~~~~~e~l~~~h~~latgng~lrsl~t~l~~~~~~~~~~~~~~~a~~ll~~~v~g~~~~qwgt~gg~~~~~v 250 (535)
T PRK15375 171 LKRTLPQLEQMDGNSLRENFQEMASGNGPLRSLMTNLQNLNKIPEAKQLNDYVTTLTNIQVGVARFSQWGTCGGEVERWV 250 (535)
T ss_pred hhhhHHHHhccCHHHHhHHHHHhhcCCchHHHHHHHHHHHhhcccchHHHHHHHHHhhccccceeHHHhhccchHHHHHH
Confidence 4566666653346777777777777776677888888888886654 2455554 33555553 34577
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHH
Q psy355 75 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 135 (285)
Q Consensus 75 ~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l 135 (285)
.+-+++....|+.=|-.+++--...|..+-..-+-.|+-+-++. +...+ |-+|+|+|
T Consensus 251 ~~as~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ag~p~~~~~~~-~~~~~---~~~~~~~I 307 (535)
T PRK15375 251 DKASTHELTQAVKKIHVIAKELKNVTAELEKIEAGAPMPQTMSG-PTLGL---ARFAVSSI 307 (535)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCC-ccchh---hHHHhccc
Confidence 77788888888888888887666667666554444455555543 33333 33555554
No 435
>PF10228 DUF2228: Uncharacterised conserved protein (DUF2228); InterPro: IPR019361 This entry contains proteins that have no known function.
Probab=20.61 E-value=1.9e+02 Score=25.52 Aligned_cols=70 Identities=26% Similarity=0.267 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcC-CHHHHHhhhcCCCHHHHHHHHHHHHHH
Q psy355 22 AELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMG-GLPVLQPLLEGSDPELRWRAAETVADI 92 (285)
Q Consensus 22 ~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~G-g~~~Lv~lL~s~~~~vr~~A~~~lg~~ 92 (285)
..+|++++.+.+.. +++++..+++.|.+++.....|+|=++-| |+..=+.|..+++..+...|..+|..+
T Consensus 171 ~~Lk~il~~i~~a~-~~~~~~~~~~~lqel~t~v~~AnDEcDfG~gLELG~dLF~~g~~~f~~~~~~lL~~A 241 (253)
T PF10228_consen 171 AELKKILKKIVEAK-NDEERQKAFAPLQELVTFVQIANDECDFGMGLELGHDLFCYGSKYFHKVALQLLPMA 241 (253)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHhccccCcchheecceeeecCchHHHHHHHHHHHHH
Confidence 45677777666633 46788888888888888888888877777 666667788888888888777777643
No 436
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.45 E-value=70 Score=23.67 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=13.3
Q ss_pred CHHhHHHHHHHHHHhc
Q psy355 2 NEANRGFLLDALNSMM 17 (285)
Q Consensus 2 ~~e~~~~L~~al~~~~ 17 (285)
|+|..+||+.|++.=.
T Consensus 25 sKdt~eWLeaalkRKy 40 (106)
T COG4837 25 SKDTYEWLEAALKRKY 40 (106)
T ss_pred chhHHHHHHHHHhccC
Confidence 6889999999998653
No 437
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=20.44 E-value=4.8e+02 Score=21.32 Aligned_cols=94 Identities=20% Similarity=0.136 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hhcCCCHHHHHHHHHHHHHHhhCCHHHH-HHHH-hcCcHHHHHHhh
Q psy355 40 ICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQ-NFII-QTDFLNLLLTSI 116 (285)
Q Consensus 40 ~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~nn~~~q-~~v~-~~g~l~~L~~LL 116 (285)
..-.+++++..-+++-+-..+=.--|-+..++. +.+|++|.++..+-.+-..+.....-.+ ...+ ..+.+..++.++
T Consensus 31 rL~g~~~e~~~~v~~F~~~A~~~f~~~~~~li~~~~~s~dp~~~~~a~~~~~~~~R~~~L~~~~~~l~~~~~~~r~~~~~ 110 (167)
T PF11157_consen 31 RLGGHLDELRRQVAGFQATAARYFGGDREALIAHYRQSSDPVFRARAESMQATIERYQRLSQQLQALAQASPFERAWYFL 110 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 344557777777766442222222456777777 5689999999999998888776443222 2233 678888999999
Q ss_pred ccCCCHHHHHHHHHHHHH
Q psy355 117 EHDSNTTVQVKSLYAVSC 134 (285)
Q Consensus 117 ~~~~~~~v~~~a~~ALs~ 134 (285)
.+ .+..+...+...-+-
T Consensus 111 ~~-~d~~i~~~t~~~f~p 127 (167)
T PF11157_consen 111 RP-ADPEIAQETWQNFSP 127 (167)
T ss_pred hc-ccHHHHHHHHHhCCC
Confidence 96 678888876554443
No 438
>KOG2029|consensus
Probab=20.27 E-value=3.3e+02 Score=27.33 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHcCCHHHHHhh--hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh
Q psy355 60 DFLKMGGLPVLQPL--LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR 137 (285)
Q Consensus 60 ~~~~~Gg~~~Lv~l--L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r 137 (285)
.+-+-||+..+..+ +..+.+.+....+++++|++ -++.........|.++.+-..-+. ++ .++..+..|-..-..
T Consensus 286 ~l~~dg~~q~~~~~~e~~rd~~~v~~~l~rvlanms-~~~~~~~s~~~S~W~sl~s~~~t~-~d-~l~~~~~sak~man~ 362 (697)
T KOG2029|consen 286 GLWDDGGLQHLAVLQEFDRDGQVVMRALMRVLANMS-EDEKLALSDSRSGWVSLVSEMSTT-PD-SLRERALSAKLMANL 362 (697)
T ss_pred HHHhcchHHHHHHHHHHhcCChhhhHHHHHHHHhhh-cccccchhhhhhhhHHHHHHHhcC-ch-hHHHHHHHHHHhccC
Q ss_pred CChHhHHHHHhcC
Q psy355 138 DNEECLKEFIKRD 150 (285)
Q Consensus 138 ~~~~~~~~f~~~~ 150 (285)
.. .+++.+...|
T Consensus 363 ~~-~~~~~i~~~~ 374 (697)
T KOG2029|consen 363 DS-KAQQMINEKG 374 (697)
T ss_pred ch-hhhhhhccCC
No 439
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.18 E-value=5e+02 Score=21.52 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=57.6
Q ss_pred CCHHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhhcC----cchHHHHHHcCCHHHHHhhh
Q psy355 1 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQ--KDICIGALDNLSDYVCS----IDYANDFLKMGGLPVLQPLL 74 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~--~~~~~~al~~L~~lv~~----~dna~~~~~~Gg~~~Lv~lL 74 (285)
||.++.++.++.|+.. ...++.|++....+.+.... ..........+-..++. +..++.|...= +|.+++++
T Consensus 65 ls~~e~~~~~~~l~ea-~~~i~~i~~~~~~i~~~~~~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~y-Lp~~~~l~ 142 (199)
T PF10112_consen 65 LSDREYEYIREILEEA-KEKIRRIEKAIKRIRDLEMIEKVSRIEKIARRIFKYVEKDPERLTQARKFLYYY-LPTAVKLL 142 (199)
T ss_pred CChhHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHH-hhHHHHHH
Confidence 6788889999999999 57788999988877776632 13333334444333332 33455553321 34444444
Q ss_pred c-------C--CCHH---HHHHHHHHHHHHhhCCHHHHHHHHh
Q psy355 75 E-------G--SDPE---LRWRAAETVADIVQNNPFSQNFIIQ 105 (285)
Q Consensus 75 ~-------s--~~~~---vr~~A~~~lg~~a~nn~~~q~~v~~ 105 (285)
. + .+++ .+..+...|..+++.-....+.+++
T Consensus 143 ~kY~~l~~~~~~~~~~~~~l~e~~~~L~~l~~~f~~~~~~l~~ 185 (199)
T PF10112_consen 143 EKYAELESQPVKSEEIKQSLEEIEETLDTLNQAFEKDLDKLLE 185 (199)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 1 2332 3444566666666554444444433
No 440
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=20.13 E-value=2.5e+02 Score=18.83 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=27.3
Q ss_pred cCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHhhCC
Q psy355 106 TDFLNLLLTSIE-HDSNTTVQVKSLYAVSCLVRDN 139 (285)
Q Consensus 106 ~g~l~~L~~LL~-~~~~~~v~~~a~~ALs~l~r~~ 139 (285)
-|.+..|+.++. ...+..+|-.|+-.|-|.+..+
T Consensus 13 p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~ 47 (77)
T PF03810_consen 13 PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN 47 (77)
T ss_dssp TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc
Confidence 388899999994 4447899999999999877654
Done!