Query psy355
Match_columns 285
No_of_seqs 231 out of 1307
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 19:33:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xqr_A HSPBP1 protein; armadil 100.0 1.9E-55 6.5E-60 394.7 26.2 273 6-282 13-296 (296)
2 3tpo_A Importin subunit alpha- 100.0 1.6E-30 5.4E-35 250.0 27.2 247 20-280 245-504 (529)
3 3ul1_B Importin subunit alpha- 100.0 2.7E-30 9.4E-35 247.5 25.2 247 20-280 226-485 (510)
4 4b8j_A Importin subunit alpha- 100.0 8.6E-27 2.9E-31 223.0 30.0 240 37-280 257-503 (528)
5 4db6_A Armadillo repeat protei 99.9 5.9E-26 2E-30 191.4 23.2 184 37-224 25-209 (210)
6 4hxt_A De novo protein OR329; 99.9 2.6E-25 9E-30 191.4 27.2 244 24-280 4-248 (252)
7 2jdq_A Importin alpha-1 subuni 99.9 3.7E-25 1.3E-29 206.2 29.3 234 38-279 206-449 (450)
8 1wa5_B Importin alpha subunit; 99.9 1.6E-24 5.5E-29 207.6 30.0 235 38-278 271-515 (530)
9 4db8_A Armadillo-repeat protei 99.9 1.1E-24 3.9E-29 188.4 25.4 235 25-272 15-250 (252)
10 4hxt_A De novo protein OR329; 99.9 7E-24 2.4E-28 182.4 25.8 198 24-227 46-244 (252)
11 4db6_A Armadillo repeat protei 99.9 5.6E-24 1.9E-28 179.3 24.3 201 61-272 8-208 (210)
12 4db8_A Armadillo-repeat protei 99.9 2.8E-24 9.7E-29 185.9 22.8 192 27-224 59-251 (252)
13 3nmw_A APC variant protein; AR 99.9 4.6E-24 1.6E-28 195.5 23.2 192 37-231 140-341 (354)
14 3nmz_A APC variant protein; pr 99.9 5.3E-24 1.8E-28 200.9 21.6 191 37-230 256-456 (458)
15 3nmw_A APC variant protein; AR 99.9 1.7E-22 5.7E-27 185.1 24.5 227 38-274 98-335 (354)
16 3ul1_B Importin subunit alpha- 99.9 5.1E-22 1.7E-26 190.1 24.9 201 24-230 59-267 (510)
17 1xm9_A Plakophilin 1; armadill 99.9 4E-22 1.4E-26 188.4 23.3 239 26-276 90-452 (457)
18 3tt9_A Plakophilin-2; cell adh 99.9 2.3E-22 7.9E-27 173.5 19.4 198 24-223 10-228 (233)
19 1xm9_A Plakophilin 1; armadill 99.9 2.1E-22 7.2E-27 190.3 20.6 195 24-223 4-219 (457)
20 3nmz_A APC variant protein; pr 99.9 9.3E-22 3.2E-26 185.6 24.0 226 39-274 215-451 (458)
21 3now_A UNC-45 protein, SD10334 99.9 2.5E-22 8.6E-27 200.0 20.4 187 38-226 595-784 (810)
22 3tpo_A Importin subunit alpha- 99.9 1.9E-21 6.5E-26 186.7 22.3 188 38-228 134-326 (529)
23 4b8j_A Importin subunit alpha- 99.9 1.3E-20 4.4E-25 180.1 26.1 189 38-230 132-321 (528)
24 3now_A UNC-45 protein, SD10334 99.9 7.7E-21 2.6E-25 189.4 23.8 224 37-271 549-780 (810)
25 2jdq_A Importin alpha-1 subuni 99.9 7.3E-20 2.5E-24 170.3 26.1 189 37-229 78-268 (450)
26 1wa5_B Importin alpha subunit; 99.9 4.2E-20 1.4E-24 176.9 25.2 186 37-226 228-414 (530)
27 3tt9_A Plakophilin-2; cell adh 99.9 3.3E-20 1.1E-24 160.0 20.6 201 66-270 9-226 (233)
28 3l6x_A Catenin delta-1; cateni 99.9 3.4E-20 1.2E-24 179.1 21.9 199 24-226 50-272 (584)
29 1xqr_A HSPBP1 protein; armadil 99.8 1.1E-19 3.9E-24 162.4 20.3 145 80-229 55-201 (296)
30 1jdh_A Beta-catenin; beta-cate 99.8 1.8E-19 6.2E-24 171.1 22.0 222 37-271 279-528 (529)
31 3l6x_A Catenin delta-1; cateni 99.8 9.1E-19 3.1E-23 169.2 21.7 163 63-228 46-225 (584)
32 2z6h_A Catenin beta-1, beta-ca 99.8 3.6E-18 1.2E-22 167.5 24.2 184 37-225 276-487 (644)
33 1jdh_A Beta-catenin; beta-cate 99.8 1.1E-17 3.8E-22 158.8 25.4 197 24-226 61-258 (529)
34 2z6h_A Catenin beta-1, beta-ca 99.8 3.7E-17 1.3E-21 160.3 25.1 198 23-226 57-255 (644)
35 2z6g_A B-catenin; FULL-length, 99.8 6.5E-17 2.2E-21 162.1 22.8 184 37-225 412-623 (780)
36 2z6g_A B-catenin; FULL-length, 99.7 1.1E-15 3.9E-20 153.1 29.5 199 23-227 193-392 (780)
37 3opb_A SWI5-dependent HO expre 99.7 1.6E-15 5.6E-20 149.2 17.6 226 37-273 470-728 (778)
38 3opb_A SWI5-dependent HO expre 99.7 2.5E-15 8.6E-20 147.9 17.7 217 4-226 349-637 (778)
39 3grl_A General vesicular trans 99.5 8.9E-13 3E-17 127.0 22.9 200 4-204 37-266 (651)
40 3grl_A General vesicular trans 99.4 1E-11 3.5E-16 119.7 21.7 219 6-229 1-246 (651)
41 4gmo_A Putative uncharacterize 99.4 5E-12 1.7E-16 124.9 14.1 165 65-231 34-221 (684)
42 4gmo_A Putative uncharacterize 99.2 1.4E-10 4.7E-15 114.6 15.5 183 38-223 48-257 (684)
43 3ltm_A Alpha-REP4; protein eng 99.2 1.1E-09 3.7E-14 91.7 16.4 200 6-274 5-204 (211)
44 3ltj_A Alpharep-4; protein eng 99.1 2.3E-09 7.8E-14 89.0 17.1 153 21-222 13-165 (201)
45 3ltm_A Alpha-REP4; protein eng 99.1 1.5E-09 5.1E-14 90.8 15.8 143 38-227 64-206 (211)
46 3ltj_A Alpharep-4; protein eng 99.1 2.8E-09 9.4E-14 88.5 17.0 139 38-223 59-197 (201)
47 1oyz_A Hypothetical protein YI 99.1 2.7E-09 9.4E-14 93.1 15.6 61 151-223 160-220 (280)
48 1oyz_A Hypothetical protein YI 99.0 1.8E-08 6.2E-13 87.9 18.5 91 107-223 159-249 (280)
49 4fdd_A Transportin-1; heat rep 98.9 2.8E-09 9.6E-14 107.3 8.6 174 41-224 338-512 (852)
50 4fdd_A Transportin-1; heat rep 98.9 1.6E-08 5.5E-13 101.7 12.9 180 37-228 269-475 (852)
51 1te4_A Conserved protein MTH18 98.8 1.6E-10 5.6E-15 90.0 -1.5 120 64-221 11-130 (131)
52 2vgl_B AP-2 complex subunit be 98.8 4.3E-08 1.5E-12 95.0 13.9 177 39-230 101-317 (591)
53 3dad_A FH1/FH2 domain-containi 98.8 6E-07 2.1E-11 80.1 19.7 182 18-203 114-316 (339)
54 2vgl_B AP-2 complex subunit be 98.8 1.6E-07 5.6E-12 90.9 16.5 179 19-227 13-192 (591)
55 1w63_A Adapter-related protein 98.8 1.2E-06 4.1E-11 85.3 22.4 148 66-228 108-267 (618)
56 1w63_A Adapter-related protein 98.7 1E-06 3.5E-11 85.8 19.0 176 39-231 122-349 (618)
57 2qk2_A LP04448P; mini spindles 98.7 2.8E-07 9.6E-12 78.8 12.8 173 38-227 29-208 (242)
58 2qk1_A Protein STU2; STU2P, XM 98.6 3.8E-07 1.3E-11 78.9 11.9 180 38-225 30-221 (249)
59 1b3u_A Protein (protein phosph 98.6 1E-06 3.5E-11 83.8 15.8 149 66-227 165-313 (588)
60 1b3u_A Protein (protein phosph 98.6 2.6E-06 8.7E-11 81.1 18.6 191 19-225 42-233 (588)
61 1te4_A Conserved protein MTH18 98.6 6.8E-08 2.3E-12 74.9 5.3 88 66-176 43-130 (131)
62 3b2a_A TON_1937, putative unch 98.5 3E-06 1E-10 71.8 15.0 172 37-226 46-220 (265)
63 2bpt_A Importin beta-1 subunit 98.5 1.9E-06 6.4E-11 85.9 16.0 180 39-228 346-533 (861)
64 1qgr_A Protein (importin beta 98.5 3.1E-07 1.1E-11 91.7 10.3 179 39-227 343-540 (876)
65 2qk2_A LP04448P; mini spindles 98.5 7E-07 2.4E-11 76.3 10.5 183 69-270 19-202 (242)
66 3b2a_A TON_1937, putative unch 98.5 6E-06 2E-10 70.0 15.6 188 66-276 34-221 (265)
67 1ibr_B P95, importin beta-1 su 98.4 7.5E-06 2.6E-10 75.4 16.4 155 66-225 129-289 (462)
68 1ibr_B P95, importin beta-1 su 98.4 1.6E-06 5.3E-11 80.0 11.5 182 38-227 231-440 (462)
69 2vgl_A Adaptor protein complex 98.4 1.4E-05 4.9E-10 77.9 18.0 186 19-229 28-221 (621)
70 2db0_A 253AA long hypothetical 98.4 0.00038 1.3E-08 57.0 23.2 197 9-228 10-214 (253)
71 1qgr_A Protein (importin beta 98.3 0.00011 3.7E-09 73.3 21.9 197 27-228 177-441 (876)
72 3qml_C Protein SLS1, nucleotid 98.2 8.8E-06 3E-10 71.5 11.2 213 23-246 23-265 (315)
73 1u6g_C TIP120 protein, CAND1; 98.2 2.4E-05 8.1E-10 81.7 16.6 189 67-277 933-1136(1230)
74 2bpt_A Importin beta-1 subunit 98.2 3.5E-06 1.2E-10 84.0 9.1 196 24-227 500-714 (861)
75 1u6g_C TIP120 protein, CAND1; 98.2 1.8E-05 6.2E-10 82.5 13.9 190 25-227 9-207 (1230)
76 2qk1_A Protein STU2; STU2P, XM 98.0 7.6E-06 2.6E-10 70.7 6.5 187 70-270 21-217 (249)
77 2vgl_A Adaptor protein complex 98.0 0.00039 1.3E-08 67.7 18.1 106 67-183 113-220 (621)
78 3dad_A FH1/FH2 domain-containi 97.9 0.00049 1.7E-08 61.4 16.6 157 69-227 122-289 (339)
79 3tjz_B Coatomer subunit gamma; 97.9 0.00051 1.7E-08 62.2 16.6 187 18-228 22-209 (355)
80 4ady_A RPN2, 26S proteasome re 97.8 0.00064 2.2E-08 68.6 16.2 135 66-228 542-680 (963)
81 2of3_A ZYG-9; multifunctional 97.6 0.0015 5.2E-08 56.7 14.6 170 38-229 60-241 (266)
82 3tjz_B Coatomer subunit gamma; 97.6 0.00028 9.7E-09 63.9 9.9 153 68-234 142-326 (355)
83 4ffb_C Protein STU2; tubulin f 97.5 0.0019 6.4E-08 56.1 14.2 177 39-226 24-214 (278)
84 2db0_A 253AA long hypothetical 97.5 0.0028 9.7E-08 51.9 13.3 200 5-224 30-246 (253)
85 4ady_A RPN2, 26S proteasome re 97.4 0.0051 1.8E-07 62.1 17.0 100 67-182 579-679 (963)
86 3eg5_B Protein diaphanous homo 97.3 0.02 7E-07 52.2 18.3 161 39-203 82-275 (383)
87 4hat_C Exportin-1; heat repeat 97.2 0.0011 3.8E-08 68.1 9.3 140 77-227 465-621 (1023)
88 2f31_A Diaphanous protein homo 97.1 0.0086 2.9E-07 50.9 13.0 155 43-200 20-207 (233)
89 2bnx_A Diaphanous protein homo 97.0 0.081 2.8E-06 48.3 19.6 160 42-204 23-215 (386)
90 3u0r_A Apoptosis inhibitor 5; 97.0 0.039 1.3E-06 51.4 16.9 126 76-225 39-164 (507)
91 1wa5_C Importin alpha RE-expor 96.9 0.013 4.6E-07 59.5 15.0 144 76-226 416-584 (960)
92 3ebb_A Phospholipase A2-activa 96.9 0.11 3.8E-06 45.8 18.6 205 1-215 77-297 (304)
93 1ho8_A Vacuolar ATP synthase s 96.9 0.31 1E-05 45.5 23.2 195 25-226 80-303 (480)
94 2x19_B Importin-13; nuclear tr 96.8 0.0093 3.2E-07 60.3 12.1 141 75-227 459-602 (963)
95 2iw3_A Elongation factor 3A; a 96.6 0.056 1.9E-06 55.1 15.8 172 38-225 148-325 (986)
96 2x1g_F Cadmus; transport prote 96.5 0.0071 2.4E-07 61.4 9.3 138 77-226 476-617 (971)
97 1lsh_A Lipovitellin (LV-1N, LV 96.5 0.097 3.3E-06 54.0 17.6 214 3-253 339-576 (1056)
98 3m1i_C Exportin-1; heat repeat 96.4 0.012 4.1E-07 60.5 10.5 143 77-227 465-621 (1049)
99 3c2g_A SYS-1 protein; beta-cat 96.4 0.039 1.3E-06 49.5 12.0 185 39-225 258-474 (619)
100 2fv2_A RCD1 required for cell 96.4 0.14 4.9E-06 43.8 15.1 197 22-226 3-226 (268)
101 1ho8_A Vacuolar ATP synthase s 96.3 0.0037 1.3E-07 58.4 5.2 90 6-96 380-478 (480)
102 1juq_A ADP-ribosylation factor 96.2 0.016 5.6E-07 46.8 8.1 120 12-137 2-128 (171)
103 1upk_A MO25 protein; transfera 96.2 0.6 2E-05 41.5 20.6 167 97-271 154-333 (341)
104 1wa5_C Importin alpha RE-expor 96.2 0.049 1.7E-06 55.3 13.0 64 70-138 460-526 (960)
105 2x1g_F Cadmus; transport prote 95.9 0.05 1.7E-06 55.2 11.9 131 39-180 479-616 (971)
106 2x19_B Importin-13; nuclear tr 95.9 0.17 5.7E-06 51.1 15.5 176 39-225 464-650 (963)
107 1x5b_A Signal transducing adap 95.7 0.066 2.2E-06 42.8 9.4 105 26-136 18-124 (163)
108 4ffb_C Protein STU2; tubulin f 95.6 0.29 1E-05 41.9 13.7 148 67-225 12-169 (278)
109 2fv2_A RCD1 required for cell 95.5 1 3.5E-05 38.5 18.2 166 21-189 47-233 (268)
110 1lsh_A Lipovitellin (LV-1N, LV 95.5 0.21 7.2E-06 51.5 14.4 177 19-226 388-578 (1056)
111 2iw3_A Elongation factor 3A; a 95.5 0.11 3.9E-06 52.8 12.1 186 22-224 14-204 (986)
112 3l9t_A Putative uncharacterize 95.4 0.31 1.1E-05 41.3 12.7 142 68-233 74-216 (240)
113 1mhq_A ADP-ribosylation factor 95.4 0.13 4.6E-06 40.3 9.8 71 66-136 39-115 (148)
114 3zyq_A Hepatocyte growth facto 95.0 0.14 4.9E-06 43.1 9.6 107 24-136 9-117 (226)
115 4hat_C Exportin-1; heat repeat 95.0 0.13 4.4E-06 52.9 10.9 165 9-182 433-621 (1023)
116 3ibv_A Exportin-T; karyopherin 94.9 0.77 2.6E-05 46.9 16.4 110 20-138 4-120 (980)
117 1dvp_A HRS, hepatocyte growth 94.9 0.16 5.4E-06 42.6 9.6 107 24-136 6-114 (220)
118 3gs3_A Symplekin, LD45768P; he 94.8 1.6 5.5E-05 37.3 15.9 190 26-228 16-247 (257)
119 3ldz_A STAM-1, signal transduc 94.8 0.19 6.5E-06 39.0 9.1 104 26-136 8-113 (140)
120 3o2t_A Symplekin; heat repeat, 94.7 2.5 8.4E-05 38.4 19.3 193 21-228 24-260 (386)
121 3g2s_A C-terminal fragment of 94.4 0.42 1.4E-05 37.5 10.2 108 24-137 12-126 (149)
122 3pst_A Protein DOA1; protein d 94.3 0.58 2E-05 43.0 12.5 184 1-197 207-407 (425)
123 2f31_A Diaphanous protein homo 94.3 0.19 6.6E-06 42.4 8.9 97 126-226 19-127 (233)
124 3m1i_C Exportin-1; heat repeat 94.3 1.2 4E-05 45.6 16.2 139 81-229 429-574 (1049)
125 1elk_A Target of MYB1; superhe 94.2 0.34 1.2E-05 38.3 9.6 107 23-135 16-128 (157)
126 1upk_A MO25 protein; transfera 94.2 2.8 9.6E-05 37.2 17.8 151 39-190 138-297 (341)
127 3gae_A Protein DOA1; UFD3, CDC 94.2 0.16 5.6E-06 43.5 8.3 137 40-185 70-223 (253)
128 1lrv_A LRV, leucine-rich repea 94.1 0.034 1.2E-06 47.6 3.7 21 68-88 101-121 (244)
129 2of3_A ZYG-9; multifunctional 94.0 0.23 8E-06 42.8 8.8 101 67-180 134-237 (266)
130 3qml_C Protein SLS1, nucleotid 93.8 1 3.5E-05 39.5 12.4 136 81-224 44-189 (315)
131 3l9t_A Putative uncharacterize 93.6 2.5 8.6E-05 35.7 14.2 131 38-191 85-219 (240)
132 1lrv_A LRV, leucine-rich repea 93.6 0.045 1.5E-06 46.8 3.5 21 68-88 77-97 (244)
133 3l3f_X Protein DOA1, DOA1/UFD3 93.6 0.61 2.1E-05 42.0 10.9 183 1-196 144-343 (362)
134 3eg5_B Protein diaphanous homo 93.3 0.44 1.5E-05 43.3 9.8 111 112-226 71-193 (383)
135 3oc3_A Helicase MOT1, MOT1; re 93.0 0.066 2.3E-06 51.1 3.8 205 22-269 218-432 (800)
136 3ibv_A Exportin-T; karyopherin 92.6 1.1 3.8E-05 45.7 12.7 97 39-141 458-570 (980)
137 3ebb_A Phospholipase A2-activa 91.5 6.6 0.00023 34.3 17.7 203 21-233 57-272 (304)
138 3u0r_A Apoptosis inhibitor 5; 91.4 1.9 6.6E-05 40.2 11.5 126 30-176 34-160 (507)
139 3gjx_A Exportin-1; transport, 91.0 0.63 2.2E-05 48.0 8.7 97 77-180 491-596 (1073)
140 2bnx_A Diaphanous protein homo 90.5 1.4 4.8E-05 40.0 9.8 95 128-226 25-131 (386)
141 3ldz_A STAM-1, signal transduc 90.0 1.9 6.5E-05 33.2 8.8 90 127-224 24-114 (140)
142 3a6p_A Exportin-5; exportin-5, 90.0 10 0.00036 39.4 17.0 107 22-138 11-126 (1204)
143 3gjx_A Exportin-1; transport, 89.8 5 0.00017 41.3 14.1 113 108-229 478-600 (1073)
144 2xpp_A IWS1, ECU08_0440; trans 87.4 8.6 0.00029 29.8 11.3 93 39-135 35-134 (145)
145 1x5b_A Signal transducing adap 84.5 2.9 0.0001 33.1 7.0 91 129-226 36-127 (163)
146 1mhq_A ADP-ribosylation factor 84.2 3.8 0.00013 31.9 7.5 94 128-226 21-118 (148)
147 3zyq_A Hepatocyte growth facto 83.9 5.6 0.00019 33.1 8.9 93 127-226 27-120 (226)
148 3hjl_A Flagellar motor switch 83.7 12 0.0004 33.1 11.3 47 122-168 154-216 (329)
149 3oc3_A Helicase MOT1, MOT1; re 83.1 1.7 5.8E-05 41.7 5.8 141 67-223 176-327 (800)
150 3rru_A TOM1L1 protein; structu 82.7 7.4 0.00025 30.3 8.6 110 24-139 17-132 (152)
151 3g2s_A C-terminal fragment of 82.3 5.5 0.00019 31.0 7.7 95 127-226 30-128 (149)
152 1juq_A ADP-ribosylation factor 82.1 3.2 0.00011 33.1 6.4 95 127-226 32-130 (171)
153 1bwx_A Parathyroid hormone; pe 79.8 1.2 4.2E-05 26.2 2.2 15 2-16 17-31 (39)
154 1et1_A Parathyroid hormone; he 77.6 1.1 3.7E-05 25.6 1.6 14 3-16 18-31 (34)
155 1vdy_A Hypothetical protein (R 77.4 6.9 0.00023 30.1 6.7 77 193-276 50-133 (140)
156 3c2g_A SYS-1 protein; beta-cat 74.5 18 0.00062 32.6 9.3 97 66-162 325-450 (619)
157 3nfq_A Transcription factor IW 69.9 31 0.0011 27.4 8.9 94 40-137 51-151 (170)
158 1dvp_A HRS, hepatocyte growth 69.8 9.1 0.00031 31.6 6.2 90 129-225 26-116 (220)
159 1elk_A Target of MYB1; superhe 68.0 15 0.0005 28.7 6.7 73 152-224 55-130 (157)
160 1vdy_A Hypothetical protein (R 59.6 37 0.0013 26.0 7.3 95 127-226 30-132 (140)
161 3ut4_A CTHE_2751, putative unc 59.3 30 0.001 26.3 6.7 100 152-275 33-132 (134)
162 3a6p_A Exportin-5; exportin-5, 57.8 92 0.0032 32.3 12.3 130 77-225 25-163 (1204)
163 4atg_A TAF6; transcription, TF 52.9 90 0.0031 25.2 10.9 136 1-147 5-169 (196)
164 1sz9_A PCF11 protein; RNA poly 51.6 60 0.0021 24.7 7.5 89 76-175 22-110 (144)
165 3rru_A TOM1L1 protein; structu 48.9 33 0.0011 26.6 5.6 76 152-227 55-133 (152)
166 2jak_A Serine/threonine-protei 48.1 1.4E+02 0.0047 26.9 10.3 167 96-276 163-351 (392)
167 1n4k_A Inositol 1,4,5-trisphos 44.3 1.7E+02 0.0059 26.0 12.9 112 21-140 227-380 (381)
168 3o2t_A Symplekin; heat repeat, 41.8 1.9E+02 0.0066 25.9 12.0 109 106-223 62-182 (386)
169 1vsy_5 Proteasome activator BL 39.8 27 0.00091 35.7 4.7 102 67-178 135-244 (997)
170 3h3g_B Parathyroid hormone-rel 39.7 19 0.00065 18.7 1.9 13 4-16 8-20 (24)
171 1vsy_5 Proteasome activator BL 36.5 25 0.00087 35.8 3.9 31 66-96 844-875 (997)
172 2xpp_A IWS1, ECU08_0440; trans 35.8 1.3E+02 0.0046 22.9 7.1 75 141-220 52-132 (145)
173 3l3f_X Protein DOA1, DOA1/UFD3 34.7 1.4E+02 0.0047 26.6 8.0 137 82-229 180-331 (362)
174 3fga_B Serine/threonine-protei 33.4 2.7E+02 0.0092 25.1 11.1 138 85-235 234-377 (403)
175 4gof_A Small glutamine-rich te 31.7 96 0.0033 19.4 4.8 40 239-278 8-47 (52)
176 3nfq_A Transcription factor IW 29.9 1.8E+02 0.0061 22.9 7.1 77 140-221 66-148 (170)
177 1t07_A Hypothetical UPF0269 pr 29.0 34 0.0012 24.2 2.4 17 1-17 60-76 (94)
178 3pst_A Protein DOA1; protein d 28.7 3.3E+02 0.011 24.7 11.4 137 82-228 243-393 (425)
179 4atg_A TAF6; transcription, TF 27.7 1.4E+02 0.0049 24.0 6.3 119 108-236 41-171 (196)
180 2ba3_A NIKA; dimer, bacterial 27.1 81 0.0028 19.0 3.8 28 1-28 22-49 (51)
181 2vxg_A LD41624, GE-1, CG6181-P 27.1 61 0.0021 24.7 3.8 18 3-20 73-90 (139)
182 2ccq_A P97, peptide N-glycanas 26.9 98 0.0033 22.0 4.7 46 68-113 4-66 (99)
183 1xs8_A UPF0269 protein YGGX; h 26.2 38 0.0013 23.8 2.2 17 1-17 58-74 (91)
184 3fga_B Serine/threonine-protei 25.3 3.7E+02 0.013 24.1 14.9 95 44-139 104-202 (403)
185 3gae_A Protein DOA1; UFD3, CDC 23.2 73 0.0025 26.7 4.0 136 81-229 70-222 (253)
186 2g7o_A Protein TRAM; four heli 22.3 72 0.0025 21.2 2.9 20 259-278 51-70 (70)
187 3s51_A Protein FACI, fanconi a 21.8 3.2E+02 0.011 28.7 8.9 85 126-224 457-544 (1308)
188 3gs3_A Symplekin, LD45768P; he 21.4 3.6E+02 0.012 22.5 12.3 130 80-223 30-172 (257)
189 1zoq_C CREB-binding protein, i 21.1 1.5E+02 0.005 17.9 4.8 37 108-148 2-38 (47)
190 1xg8_A Hypothetical protein SA 21.1 37 0.0013 24.6 1.4 15 2-16 28-42 (111)
191 2npp_B PP2A, B subunit, serine 21.1 4.8E+02 0.016 23.8 9.5 162 101-276 156-339 (449)
192 2npp_B PP2A, B subunit, serine 21.0 4.8E+02 0.016 23.8 13.1 105 126-235 302-410 (449)
193 3uj4_A Inositol 1,4,5-trisphos 20.5 4.6E+02 0.016 24.9 9.3 85 21-105 450-576 (604)
194 1pqv_S STP-alpha, transcriptio 20.3 3.5E+02 0.012 23.2 7.8 65 23-91 5-71 (309)
No 1
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=100.00 E-value=1.9e-55 Score=394.67 Aligned_cols=273 Identities=32% Similarity=0.473 Sum_probs=245.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccC----------CCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hh
Q psy355 6 RGFLLDALNSMMVNVGAELEKIIKTLKENQ----------DQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LL 74 (285)
Q Consensus 6 ~~~L~~al~~~~~d~~~~mk~~l~~l~~~~----------~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL 74 (285)
..||++||... +|++++||+++.+|.++. .+.+.++.|++.|.++++++||+++|++.||+|+|+. +|
T Consensus 13 ~~~~~~~~~~~-~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL 91 (296)
T 1xqr_A 13 LVPRGSHMRGQ-RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL 91 (296)
T ss_dssp -------CCSC-HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT
T ss_pred hHHHHHHHcCC-CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHH
Confidence 47999999874 899999999999999973 3357899999999999999999999999999999999 99
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHH
Q psy355 75 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSV 154 (285)
Q Consensus 75 ~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~ 154 (285)
+++++.||.+|+|+||++++|||.+|+.+++.|++|+|+++|+++++..++++|+|||||+++|++++.+.|++.||+++
T Consensus 92 ~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~ 171 (296)
T 1xqr_A 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV 171 (296)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999997667899999999999999999999999999999999
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcc
Q psy355 155 LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCR 234 (285)
Q Consensus 155 L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~ 234 (285)
|+.+|++++.++|++|+|+|++|+.++++.++.+++.|++++|+.+|.++ +++++++++.+|.+|+..+++.+..|+
T Consensus 172 L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~---d~~v~~~al~aL~~l~~~~~~~~~~~~ 248 (296)
T 1xqr_A 172 LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLVTDFPQGVRECR 248 (296)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC---CSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC---ChhHHHHHHHHHHHHHhCChhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999998889998
Q ss_pred cCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCCchhhhc
Q psy355 235 LEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEFDH 282 (285)
Q Consensus 235 ~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~~~~~~~ 282 (285)
.+...|..+|+++++.+|.|++|+++|+||.+|+++||+++++++|||
T Consensus 249 ~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~~~~~~~~~ 296 (296)
T 1xqr_A 249 EPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPADDSMDR 296 (296)
T ss_dssp CGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC---------
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCCCCCcccCC
Confidence 876678899999999999877799999999999999999999999997
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.98 E-value=1.6e-30 Score=250.02 Aligned_cols=247 Identities=14% Similarity=0.194 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC
Q psy355 20 VGAELEKIIKTLKENQ--DQKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN 96 (285)
Q Consensus 20 ~~~~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn 96 (285)
....++.+++.|..-- .+++.+..|++.|.+++...+ +...++..|++|.|+.+|.++++.++.+|+++|||+++++
T Consensus 245 ~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 324 (529)
T 3tpo_A 245 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 324 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc
Confidence 3556666777665433 345788899999999998754 4556788999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHH
Q psy355 97 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC 176 (285)
Q Consensus 97 ~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~ 176 (285)
+..+..+++.|++++|+.+|.+ +++.+++.|+|+|+||+.+++.....+++.|++++|+.+|.+++.++|..|+|+|+|
T Consensus 325 ~~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n 403 (529)
T 3tpo_A 325 DEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITN 403 (529)
T ss_dssp HHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999997 678999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH---------HHhhcccCcccHHHHHHH
Q psy355 177 LCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE---------AQSLCRLEPLNLKFKLNF 246 (285)
Q Consensus 177 L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~---------~~~~~~~~~~~l~~~l~~ 246 (285)
++.+ +++.+.++++.|++++|+.+|.++ |++++..++.+|.+|++.++. .+++| .++ +
T Consensus 404 l~~~~~~~~~~~l~~~g~i~~L~~LL~~~---d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~----ggl-----~ 471 (529)
T 3tpo_A 404 YTSGGTVEQIVYLVHCGIIEPLMNLLSAK---DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC----GGL-----D 471 (529)
T ss_dssp HHHHSCHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT----TCH-----H
T ss_pred HHcCCCHHHHHHHHHCcCHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHC----CcH-----H
Confidence 9875 677889999999999999999999 999999999999999865431 12222 122 3
Q ss_pred HHHHccChHhhHHHHHHHHHHHHHhcCCCCchhh
Q psy355 247 IKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEF 280 (285)
Q Consensus 247 ~~~~l~~~~e~~~~~~~~~~il~~~f~~~~~~~~ 280 (285)
.++.|| +|+|.++|++|.+||++||+++++|+.
T Consensus 472 ~ie~Lq-~~~n~~i~~~A~~iie~yf~~~~~~~~ 504 (529)
T 3tpo_A 472 KIEALQ-RHENESVYKASLNLIEKYFSVEEEEDQ 504 (529)
T ss_dssp HHTGGG-GCSSHHHHHHHHHHHHHHC--------
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHCCCcccccc
Confidence 566888 569999999999999999997765543
No 3
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=2.7e-30 Score=247.49 Aligned_cols=247 Identities=14% Similarity=0.187 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC
Q psy355 20 VGAELEKIIKTLKENQ--DQKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN 96 (285)
Q Consensus 20 ~~~~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn 96 (285)
+...++.+++.|..-- .+.+.+..|++.|.++++..+ +...+...|+++.|+.+|.++++.++.+|+++|||+++++
T Consensus 226 ~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~ 305 (510)
T 3ul1_B 226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305 (510)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC
Confidence 3555666766665433 345788899999999998754 4456788999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHH
Q psy355 97 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC 176 (285)
Q Consensus 97 ~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~ 176 (285)
+..++.+++.|++|.|+.+|++ ++..+|+.|+|+|+||+.+++...+.+++.|+++.|+.+|++++.++|+.|+|+|+|
T Consensus 306 ~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~N 384 (510)
T 3ul1_B 306 DEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 384 (510)
T ss_dssp HHHHHHHHHTTGGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999997 678999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC-CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH---------HhhcccCcccHHHHHHH
Q psy355 177 LCTD-NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA---------QSLCRLEPLNLKFKLNF 246 (285)
Q Consensus 177 L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~---------~~~~~~~~~~l~~~l~~ 246 (285)
++.+ +++.+.++++.|++++|+.+|.++ |++++..++.+|.+|++.+++. +++| +.. +
T Consensus 385 l~~~~~~~~~~~L~~~g~i~~L~~LL~~~---d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~-----ggl----~ 452 (510)
T 3ul1_B 385 YTSGGTVEQIVYLVHCGIIEPLMNLLSAK---DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC-----GGL----D 452 (510)
T ss_dssp HHHHCCHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT-----THH----H
T ss_pred HHccCCHHHHHHHHHCCCHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHc-----CcH----H
Confidence 9875 677889999999999999999999 9999999999999999755321 1222 111 3
Q ss_pred HHHHccChHhhHHHHHHHHHHHHHhcCCCCchhh
Q psy355 247 IKEKHAGNEVYHKELEHVNSVLTEVFEEDSLEEF 280 (285)
Q Consensus 247 ~~~~l~~~~e~~~~~~~~~~il~~~f~~~~~~~~ 280 (285)
.++.|| .|+|.++|++|.+||++||+++++|+.
T Consensus 453 ~ie~Lq-~~~n~~i~~~A~~iie~yf~~~~~~~~ 485 (510)
T 3ul1_B 453 KIEALQ-RHENESVYKASLNLIEKYFSVEEEEDQ 485 (510)
T ss_dssp HHHHGG-GCSSHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHH-cCCCHHHHHHHHHHHHHHCCCcccccc
Confidence 566898 569999999999999999998766543
No 4
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.96 E-value=8.6e-27 Score=223.03 Aligned_cols=240 Identities=16% Similarity=0.215 Sum_probs=202.6
Q ss_pred CHHHHHHHHHHHHHhhcCcch-HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 37 QKDICIGALDNLSDYVCSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~~dn-a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
+.+.+..|+..|.+++...+. ...+...|+++.|+.+|.++++.++..|+++||+++.+++..++.+++.|++|.|+.+
T Consensus 257 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~l 336 (528)
T 4b8j_A 257 DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSL 336 (528)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHH
Confidence 357788999999999977554 4578899999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcH
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMV 194 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v 194 (285)
|.+..++.+++.|+|+|+|++.+++.....+++.|+++.|+.+|.+++.+++..|+|+|++++.. ++....++++.|++
T Consensus 337 L~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i 416 (528)
T 4b8j_A 337 LTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCI 416 (528)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCH
T ss_pred HcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence 99743789999999999999999998888999999999999999999999999999999999987 68899999999999
Q ss_pred HHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHH-----HHHHHccChHhhHHHHHHHHHHHH
Q psy355 195 EQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLN-----FIKEKHAGNEVYHKELEHVNSVLT 269 (285)
Q Consensus 195 ~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~-----~~~~~l~~~~e~~~~~~~~~~il~ 269 (285)
++|+.+|..+ ++.++..++.+|.+|+..++.....+..+...+...++ +.+..++ ++++.++++++..|++
T Consensus 417 ~~L~~lL~~~---d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~v~~~a~~il~ 492 (528)
T 4b8j_A 417 KPLCDLLICP---DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ-SHDNNEIYEKAVKILE 492 (528)
T ss_dssp HHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 9999999998 99999999999999998776533222111112223333 3456777 5689999999999999
Q ss_pred HhcCCCCchhh
Q psy355 270 EVFEEDSLEEF 280 (285)
Q Consensus 270 ~~f~~~~~~~~ 280 (285)
+||+.++++++
T Consensus 493 ~~~~~e~~~~~ 503 (528)
T 4b8j_A 493 AYWMDEEDDTM 503 (528)
T ss_dssp HHCC-------
T ss_pred HHCCCcccccc
Confidence 99998776654
No 5
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.95 E-value=5.9e-26 Score=191.44 Aligned_cols=184 Identities=18% Similarity=0.291 Sum_probs=173.7
Q ss_pred CHHHHHHHHHHHHHhh-cCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 37 QKDICIGALDNLSDYV-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv-~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
+.+.+..|+..|..++ .+.++...+.+.|+++.|+.+|.++++.+|..|+++|++++.+++..++.+++.|++|.|+.+
T Consensus 25 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 104 (210)
T 4db6_A 25 DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104 (210)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH
Confidence 4578899999999998 456777889999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHH
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 195 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~ 195 (285)
|++ +++.++..|+|+|++++.+++...+.+++.|+++.|+++|++++.+++..|+|+|.+++..++..+..+++.|+++
T Consensus 105 L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~ 183 (210)
T 4db6_A 105 LSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183 (210)
T ss_dssp TTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred HcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH
Confidence 997 5789999999999999999999888999999999999999999999999999999999999899999999999999
Q ss_pred HHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355 196 QMCVLIDIEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 196 ~L~~lL~~~~~~d~~~~e~al~aL~~l~~ 224 (285)
.|+.++.++ +..+++.|+.+|.+|+.
T Consensus 184 ~L~~ll~~~---~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 184 KLEQLQSHE---NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHGGGCS---CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHHHhc
Confidence 999999998 99999999999999864
No 6
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=2.6e-25 Score=191.36 Aligned_cols=244 Identities=18% Similarity=0.270 Sum_probs=207.4
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF 102 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~ 102 (285)
+...++.|.+++ .+.+..|+..|..++...+ +...+.+.|+++.|+++|+++++.+|..|+++|++++.+++..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 556666776654 6789999999999987654 8888999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355 103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN 182 (285)
Q Consensus 103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~ 182 (285)
+++.|++|.|+.+|++ +++.++..|+|+|++++.+++.....+.+.|+++.|+++|++++..++..|+++|++|+...+
T Consensus 82 ~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999996 678999999999999999899999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHH
Q psy355 183 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELE 262 (285)
Q Consensus 183 ~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~ 262 (285)
..++.+++.|+++.|+.+|.++ ++.++..++.+|.+++..++......... +. +....+.++. .+.+..+
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~---i~~L~~ll~~--~~~~v~~ 230 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIASGPTSAIKAIVDA--GG---VEVLQKLLTS--TDSEVQK 230 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSBHHHHHHHHHT--TH---HHHHHHGGGC--SCHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CC---HHHHHHHHCC--CcHHHHH
Confidence 8889999999999999999988 99999999999999998777544333222 22 2222334442 4557778
Q ss_pred HHHHHHHHhcCCCCchhh
Q psy355 263 HVNSVLTEVFEEDSLEEF 280 (285)
Q Consensus 263 ~~~~il~~~f~~~~~~~~ 280 (285)
.+..+|.++.........
T Consensus 231 ~a~~~L~~l~~~~~~~~~ 248 (252)
T 4hxt_A 231 EAQRALENIKSGGWLEHH 248 (252)
T ss_dssp HHHHHHHHHHHTCBCCC-
T ss_pred HHHHHHHHHHcCCCcccc
Confidence 888888877765554433
No 7
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.95 E-value=3.7e-25 Score=206.20 Aligned_cols=234 Identities=15% Similarity=0.196 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355 38 KDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 116 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL 116 (285)
.+.+..+++.|.+++... ++...+...|+++.|+.+|.++++.+|..|+++|++++.+++...+.+++.|++|.|+.+|
T Consensus 206 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 285 (450)
T 2jdq_A 206 TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL 285 (450)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH
Confidence 567888999999998764 5677788999999999999999999999999999999999999888999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHH
Q psy355 117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVE 195 (285)
Q Consensus 117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~ 195 (285)
.+ ++..+|..|+|+|++++.+++...+.+++.|+++.|+.+|+++++++|..|+|+|++++.+ .+...+.+++.|+++
T Consensus 286 ~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~ 364 (450)
T 2jdq_A 286 SS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364 (450)
T ss_dssp TC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred cC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 97 6789999999999999999999888899999999999999999999999999999999976 677888899999999
Q ss_pred HHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhh---cccCcccHHHHHH-----HHHHHccChHhhHHHHHHHHHH
Q psy355 196 QMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSL---CRLEPLNLKFKLN-----FIKEKHAGNEVYHKELEHVNSV 267 (285)
Q Consensus 196 ~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~---~~~~~~~l~~~l~-----~~~~~l~~~~e~~~~~~~~~~i 267 (285)
.|+.+|..+ +.++++.++.+|.+++..++..... +..+ +...+. +++..++. +++.++++++..+
T Consensus 365 ~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~---~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~ 437 (450)
T 2jdq_A 365 PLCDLLTVM---DSKIVQVALNGLENILRLGEQEAKRNGTGINP---YCALIEEAYGLDKIEFLQS-HENQEIYQKAFDL 437 (450)
T ss_dssp HHHHGGGSS---CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCH---HHHHHHHHHCHHHHHHHHC-HHHHHHHHHHHHH
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHHHhchhhhhccccchhH---HHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHH
Confidence 999999998 9999999999999999877643211 1111 222332 34667774 5788999999999
Q ss_pred HHHhcCCCCchh
Q psy355 268 LTEVFEEDSLEE 279 (285)
Q Consensus 268 l~~~f~~~~~~~ 279 (285)
+.+||+++++++
T Consensus 438 l~~~~~~~~~~~ 449 (450)
T 2jdq_A 438 IEHYFGTEDEDS 449 (450)
T ss_dssp HHHHHCCC----
T ss_pred HHHHCCcccccC
Confidence 999998777654
No 8
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.94 E-value=1.6e-24 Score=207.59 Aligned_cols=235 Identities=16% Similarity=0.191 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355 38 KDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 116 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL 116 (285)
.+.+..|++.|.+++... +....+...|+++.|+.+|.++++.++..|+++|++++.+++...+.+++.|++|.|+.+|
T Consensus 271 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 350 (530)
T 1wa5_B 271 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 350 (530)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH
Confidence 577889999999999764 4566788899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-Cc--hHHHHHHHCCc
Q psy355 117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NN--QVKQVLLSMGM 193 (285)
Q Consensus 117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~--~~~~~l~~~g~ 193 (285)
.+ ++..+|..|+|+|++++.+++...+.+++.|+++.|+.+|.+++.++|..|+|+|++++.. .+ .....+++.|+
T Consensus 351 ~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~ 429 (530)
T 1wa5_B 351 SS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429 (530)
T ss_dssp TC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTC
T ss_pred cC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCC
Confidence 97 5789999999999999999998888899999999999999999999999999999999985 44 78889999999
Q ss_pred HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhh-cccCcccHHHHHH-----HHHHHccChHhhHHHHHHHHHH
Q psy355 194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSL-CRLEPLNLKFKLN-----FIKEKHAGNEVYHKELEHVNSV 267 (285)
Q Consensus 194 v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~-~~~~~~~l~~~l~-----~~~~~l~~~~e~~~~~~~~~~i 267 (285)
++.|+.+|..+ ++.+++.++.+|.+++..++..... +.... .+...+. +.+..++ ++.+.++++++..+
T Consensus 430 l~~L~~ll~~~---~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~~L~~L~-~~~~~~v~~~a~~i 504 (530)
T 1wa5_B 430 IKPLCDLLEIA---DNRIIEVTLDALENILKMGEADKEARGLNIN-ENADFIEKAGGMEKIFNCQ-QNENDKIYEKAYKI 504 (530)
T ss_dssp HHHHHHHTTTC---CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC-HHHHHHHHTTHHHHHHGGG-GCSCHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHHHHHhhhhhhhccccccc-HHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHH
Confidence 99999999998 9999999999999999877643221 10000 1112222 3556777 45889999999999
Q ss_pred HHHhcCCCCch
Q psy355 268 LTEVFEEDSLE 278 (285)
Q Consensus 268 l~~~f~~~~~~ 278 (285)
+++||..+++|
T Consensus 505 l~~~~~~~~~~ 515 (530)
T 1wa5_B 505 IETYFGEEEDA 515 (530)
T ss_dssp HHHHSSSCC--
T ss_pred HHHHCCccccc
Confidence 99999987764
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=1.1e-24 Score=188.41 Aligned_cols=235 Identities=15% Similarity=0.252 Sum_probs=195.1
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhh-cCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH
Q psy355 25 EKIIKTLKENQDQKDICIGALDNLSDYV-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 103 (285)
Q Consensus 25 k~~l~~l~~~~~~~~~~~~al~~L~~lv-~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v 103 (285)
...++.|...+ .+.+..|+..|..++ ...++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..+
T Consensus 15 ~~~~~~L~s~~--~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 15 PQMTQQLNSDD--MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHSSC--SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34444555443 367888888886544 344667789999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCch
Q psy355 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ 183 (285)
Q Consensus 104 ~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~ 183 (285)
++.|++|.|+.+|++ +++.++..|+|+|++++.+.+.....+.+.|+++.|+++|++++..++..|+|+|++|+.+++.
T Consensus 93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999997 6789999999999999998887768899999999999999999999999999999999999889
Q ss_pred HHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHH
Q psy355 184 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEH 263 (285)
Q Consensus 184 ~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~ 263 (285)
.+..+++.|+++.|+.+|.++ ++.+++.++.+|.+++..++......... +....| .+.++ +.+.+..+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L---~~ll~--~~~~~v~~~ 241 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQKQAVKEA--GALEKL---EQLQS--HENEKIQKE 241 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCS---SHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHH---HTTTT--CSSSHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHC--CcHHHH---HHHhC--CCCHHHHHH
Confidence 999999999999999999998 99999999999999998877544322221 121222 22333 245677788
Q ss_pred HHHHHHHhc
Q psy355 264 VNSVLTEVF 272 (285)
Q Consensus 264 ~~~il~~~f 272 (285)
+..+|..++
T Consensus 242 A~~~L~~l~ 250 (252)
T 4db8_A 242 AQEALEKLQ 250 (252)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 888877664
No 10
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=7e-24 Score=182.39 Aligned_cols=198 Identities=19% Similarity=0.302 Sum_probs=181.9
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF 102 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~ 102 (285)
+...++.|.++ +.+.+..|+..|..++.. .++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus 46 i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 123 (252)
T 4hxt_A 46 VEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 123 (252)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44445555543 367899999999999887 678888999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355 103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN 182 (285)
Q Consensus 103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~ 182 (285)
+++.|++|.|++++.+ +++.++..|+++|++++.+++...+.+++.|+++.|+.+|.+++..++..|+++|++++.+++
T Consensus 124 ~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 202 (252)
T 4hxt_A 124 IVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT 202 (252)
T ss_dssp HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH
T ss_pred HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999996 678999999999999999998888899999999999999999999999999999999999899
Q ss_pred hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 183 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 183 ~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
..++.+++.|+++.|+.++.++ ++.+++.|+.+|.+|....+
T Consensus 203 ~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 203 SAIKAIVDAGGVEVLQKLLTST---DSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHCCCHHHHHHHHCCC---cHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998 99999999999999998775
No 11
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.93 E-value=5.6e-24 Score=179.26 Aligned_cols=201 Identities=15% Similarity=0.235 Sum_probs=171.8
Q ss_pred HHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh
Q psy355 61 FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE 140 (285)
Q Consensus 61 ~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~ 140 (285)
+..-|+.++|+.+|+++++.+|..|+++|++++.+++..++.+++.|++|.|+++|.+ +++.++..|+|+|++++.+++
T Consensus 8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCH
T ss_pred ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCc
Confidence 4456889999999999999999999999999999999999999999999999999997 578999999999999999999
Q ss_pred HhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHH
Q psy355 141 ECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 220 (285)
Q Consensus 141 ~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~ 220 (285)
.....+++.||++.|+.+|++++..++..|+|+|++++.+++..++.+++.|+++.|+.+|.++ +..+++.++.+|.
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~ 163 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALS 163 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhc
Q psy355 221 SLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVF 272 (285)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f 272 (285)
+++..++......... +..+.| .+.+. +++.+..+.+...|..+-
T Consensus 164 ~l~~~~~~~~~~~~~~--g~i~~L---~~ll~--~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 164 NIASGGNEQKQAVKEA--GALEKL---EQLQS--HENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHTSCHHHHHHHHHT--THHHHH---HHGGG--CSCHHHHHHHHHHHHHHC
T ss_pred HHHcCCcHHHHHHHHC--CCHHHH---HHHHh--CCCHHHHHHHHHHHHHHh
Confidence 9999877544333222 222222 22333 356778888888887664
No 12
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=2.8e-24 Score=185.88 Aligned_cols=192 Identities=19% Similarity=0.300 Sum_probs=175.5
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhc-CcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh
Q psy355 27 IIKTLKENQDQKDICIGALDNLSDYVC-SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ 105 (285)
Q Consensus 27 ~l~~l~~~~~~~~~~~~al~~L~~lv~-~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~ 105 (285)
.+..|.+++ .+.+..|+..|..++. +.++...+.+.||++.|+.+|+++++.+|..|+++|++++.+.+..+..+++
T Consensus 59 L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 136 (252)
T 4db8_A 59 LVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136 (252)
T ss_dssp HHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHcCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence 344444433 6789999999999987 5678888999999999999999999999999999999999998877688999
Q ss_pred cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHH
Q psy355 106 TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVK 185 (285)
Q Consensus 106 ~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~ 185 (285)
.|++|.|+++|.+ ++..++..|+|+|++++.+++.....+++.|+++.|+++|++++..++..|+++|++++.+++..+
T Consensus 137 ~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 215 (252)
T 4db8_A 137 AGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 215 (252)
T ss_dssp TTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999996 678999999999999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355 186 QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 186 ~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~ 224 (285)
..+++.|+++.|+.++.++ ++++++.|+.+|.+|+.
T Consensus 216 ~~~~~~g~i~~L~~ll~~~---~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 216 QAVKEAGALEKLEQLQSHE---NEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTHHHHHHTTTTCS---SSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCcHHHHHHHhCCC---CHHHHHHHHHHHHHHhc
Confidence 9999999999999999998 99999999999998864
No 13
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.93 E-value=4.6e-24 Score=195.46 Aligned_cols=192 Identities=15% Similarity=0.154 Sum_probs=173.2
Q ss_pred CHHHHHHHHHHHHHhhcC--cchHHHHHHcCCHHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-hcCcHHHH
Q psy355 37 QKDICIGALDNLSDYVCS--IDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFII-QTDFLNLL 112 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~--~dna~~~~~~Gg~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~-~~g~l~~L 112 (285)
+.+.+..|.+.|..+... .++...+.+.||+|+|+++ +.+++++++..|+++|+|++..++..+..+. ..|++|+|
T Consensus 140 ~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~L 219 (354)
T 3nmw_A 140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 219 (354)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHH
Confidence 457888999999999864 4678889999999999996 5778999999999999999987877777777 79999999
Q ss_pred HHhhccCCCH---HHHHHHHHHHHHHhh---CChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHH
Q psy355 113 LTSIEHDSNT---TVQVKSLYAVSCLVR---DNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 186 (285)
Q Consensus 113 ~~LL~~~~~~---~v~~~a~~ALs~l~r---~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~ 186 (285)
+++|.+..+. .+++.|+|+|+|++. +++...+.+++.||++.|+.+|++++.++++.|+|+|++|+.++++.++
T Consensus 220 v~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 299 (354)
T 3nmw_A 220 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE 299 (354)
T ss_dssp HHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999874332 599999999999997 7888999999999999999999999999999999999999988899999
Q ss_pred HHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355 187 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS 231 (285)
Q Consensus 187 ~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~ 231 (285)
.+++.|++++|+.+|.++ +..+++.|+.+|.+|+...|..++
T Consensus 300 ~i~~~G~i~~Lv~LL~s~---~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 300 ALWDMGAVSMLKNLIHSK---HKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHTTHHHHHHTTTTCS---SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHcCCHHHHh
Confidence 999999999999999998 999999999999999999886554
No 14
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.92 E-value=5.3e-24 Score=200.90 Aligned_cols=191 Identities=15% Similarity=0.154 Sum_probs=171.8
Q ss_pred CHHHHHHHHHHHHHhhcC--cchHHHHHHcCCHHHHHhh-hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH-hcCcHHHH
Q psy355 37 QKDICIGALDNLSDYVCS--IDYANDFLKMGGLPVLQPL-LEGSDPELRWRAAETVADIVQNNPFSQNFII-QTDFLNLL 112 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~--~dna~~~~~~Gg~~~Lv~l-L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~-~~g~l~~L 112 (285)
+++.+..|.+.|.++... .++...+.+.||+|+|+.+ +.++++.++..|+.+|+|++.+++..+..+. ..|++|+|
T Consensus 256 ~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~L 335 (458)
T 3nmz_A 256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335 (458)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHH
Confidence 467899999999999863 4677889999999999996 5678999999999999999996777777777 79999999
Q ss_pred HHhhccCCCH---HHHHHHHHHHHHHhh---CChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHH
Q psy355 113 LTSIEHDSNT---TVQVKSLYAVSCLVR---DNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 186 (285)
Q Consensus 113 ~~LL~~~~~~---~v~~~a~~ALs~l~r---~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~ 186 (285)
+++|.+..+. .+++.|+|+|+|++. +++.+.+.+++.||++.|+.+|++++.++++.|+|+|++|+.++++.+.
T Consensus 336 v~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 415 (458)
T 3nmz_A 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE 415 (458)
T ss_dssp HHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999974432 599999999999997 7899999999999999999999999999999999999999988899999
Q ss_pred HHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355 187 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230 (285)
Q Consensus 187 ~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~ 230 (285)
.+++.|++++|+.+|.++ +..+++.|+.+|.+|+..+|..+
T Consensus 416 ~i~~~G~I~~Lv~LL~s~---~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 416 ALWDMGAVSMLKNLIHSK---HKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HHHHHTHHHHHHTTTTCS---SHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHcCCHhhh
Confidence 999999999999999998 99999999999999999887544
No 15
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.91 E-value=1.7e-22 Score=185.09 Aligned_cols=227 Identities=10% Similarity=0.050 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHhhcCcc-hHHHHHHcCC-HHHHHhhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHH
Q psy355 38 KDICIGALDNLSDYVCSID-YANDFLKMGG-LPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLT 114 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~d-na~~~~~~Gg-~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~~v~~~g~l~~L~~ 114 (285)
.+.+..|.+.|..++..-+ +...+...|| +|+|+.+|.+++++++..|+|+|+|++.+ ++.+++.+++.|++|+|++
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 4568899999999987654 5555667777 99999999999999999999999999986 7889999999999999999
Q ss_pred hhccCCCHHHHHHHHHHHHHHhhCChHhHHHHH-hcCcHHHHHHhhccCcH----HHHHHHHHHHHHHhc---CCchHHH
Q psy355 115 SIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFI-KRDGFSVLLRCIQSKKE----KLVIKSCFLIACLCT---DNNQVKQ 186 (285)
Q Consensus 115 LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~-~~~gi~~L~~~L~~~~~----~v~~ka~~~l~~L~~---~~~~~~~ 186 (285)
+|.++.+..+++.|++||.|++.+++.....+. ..|++++|+++|++++. .++..|+|+|++|+. .+++.++
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 257 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 865446789999999999999997777677777 78999999999997654 599999999999997 7889999
Q ss_pred HHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHH
Q psy355 187 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNS 266 (285)
Q Consensus 187 ~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~ 266 (285)
.+++.|++++|+.+|.++ +..+++.|+.+|.+|+..+++........ +....|- +.++. ...+..+.+..
T Consensus 258 ~i~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~i~~Lv---~LL~s--~~~~i~~~A~~ 327 (354)
T 3nmw_A 258 ILRENNCLQTLLQHLKSH---SLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSMLK---NLIHS--KHKMIAMGSAA 327 (354)
T ss_dssp HHHTTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSCHHHHHHHHHT--THHHHHH---TTTTC--SSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCC---ChHHHHHHHHHHHHHhCCCHHHHHHHHHC--CCHHHHH---HHHhC--CCHHHHHHHHH
Confidence 999999999999999998 99999999999999997776543322221 2222222 23332 34566677777
Q ss_pred HHHHhcCC
Q psy355 267 VLTEVFEE 274 (285)
Q Consensus 267 il~~~f~~ 274 (285)
.|..+...
T Consensus 328 aL~nL~~~ 335 (354)
T 3nmw_A 328 ALRNLMAN 335 (354)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 77666654
No 16
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.90 E-value=5.1e-22 Score=190.06 Aligned_cols=201 Identities=12% Similarity=0.221 Sum_probs=172.7
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcch--HHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhCCHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDY--ANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNNPFSQ 100 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dn--a~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn~~~q 100 (285)
+.+.++.+... +.+....|...+..+...-.| ...+++.|++|+||.+|++ +++.+|..|+|+|+|+|.+++..+
T Consensus 59 i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 59 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 45556555443 357788999999988654333 5689999999999999975 679999999999999999999999
Q ss_pred HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCc-----HHHHHHHHHHHH
Q psy355 101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK-----EKLVIKSCFLIA 175 (285)
Q Consensus 101 ~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~-----~~v~~ka~~~l~ 175 (285)
+.+++.|++|.|+.+|.+ ++..++..|+|||+||+.+++.....+++.||+++|+.+|.+++ ..+++.++|+++
T Consensus 137 ~~vv~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 215 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215 (510)
T ss_dssp HHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 999999999999999997 68899999999999999999999999999999999999998753 467889999999
Q ss_pred HHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355 176 CLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230 (285)
Q Consensus 176 ~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~ 230 (285)
+++.+...........|+++.|+.+|.++ +.+++..++.+|.+|+..++...
T Consensus 216 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~~~A~~aL~~L~~~~~~~~ 267 (510)
T 3ul1_B 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERI 267 (510)
T ss_dssp HHHCCCSSCCCHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHhhcccchhHHHHHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHHhhchhhhH
Confidence 99987654444555568999999999998 99999999999999998886543
No 17
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.90 E-value=4e-22 Score=188.38 Aligned_cols=239 Identities=12% Similarity=0.185 Sum_probs=180.4
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhh--------cCC--------CHHHHHHHHHHH
Q psy355 26 KIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL--------EGS--------DPELRWRAAETV 89 (285)
Q Consensus 26 ~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL--------~s~--------~~~vr~~A~~~l 89 (285)
..++.|... .+.+.+..|.+.|..++...++...+.. ||+|+|+.+| .++ ++.++..|+|+|
T Consensus 90 ~Lv~lL~~~-~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL 167 (457)
T 1xm9_A 90 EAVSLLRRT-GNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCL 167 (457)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHH
T ss_pred HHHHHHhhC-CCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHH
Confidence 344555422 2457788889999998887677777899 9999999999 333 466777999999
Q ss_pred HHHhhCCHHHHHHHHhc-CcHHHHHHhhcc--------------------------------------------------
Q psy355 90 ADIVQNNPFSQNFIIQT-DFLNLLLTSIEH-------------------------------------------------- 118 (285)
Q Consensus 90 g~~a~nn~~~q~~v~~~-g~l~~L~~LL~~-------------------------------------------------- 118 (285)
+|++.+ +..++.+++. |++|+|+.+|.+
T Consensus 168 ~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (457)
T 1xm9_A 168 RNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSS 246 (457)
T ss_dssp HHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------
T ss_pred HHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccc
Confidence 999987 8899999998 999999988863
Q ss_pred ------------------------------------------------CCCHHHHHHHHHHHHHHhhCChHh---H-HHH
Q psy355 119 ------------------------------------------------DSNTTVQVKSLYAVSCLVRDNEEC---L-KEF 146 (285)
Q Consensus 119 ------------------------------------------------~~~~~v~~~a~~ALs~l~r~~~~~---~-~~f 146 (285)
++++.+++.|+|||+|+++++.+. . +.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~ 326 (457)
T 1xm9_A 247 TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI 326 (457)
T ss_dssp -------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHH
T ss_pred cchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHH
Confidence 113567778899999999986432 2 334
Q ss_pred -HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCC---CCccHHHHHHHHHHHH
Q psy355 147 -IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDA---LDTEMNEHLLSALASL 222 (285)
Q Consensus 147 -~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~---~d~~~~e~al~aL~~l 222 (285)
.+.||+|.|+++|.+++.+++++|+|+|++|+.+ +.. ..++..|++++|+.+|..++. .+.++...++.+|.+|
T Consensus 327 v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~-~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni 404 (457)
T 1xm9_A 327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLL-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL 404 (457)
T ss_dssp HTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGG-HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHH-HHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999874 444 455667899999999998710 0135888999999999
Q ss_pred HhcChHHHhhcccCcccHHHHHHHHHHHccChHh-hHHHHHHHHHHHHHhcCCCC
Q psy355 223 IKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEV-YHKELEHVNSVLTEVFEEDS 276 (285)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e-~~~~~~~~~~il~~~f~~~~ 276 (285)
+..+++....... ..++ +. +..++. +. +.++|++|..+|.+||...+
T Consensus 405 ~~~~~~~~~~i~~-~g~l-~~----L~~L~~-~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 405 MASQPQLAKQYFS-SSML-NN----IINLCR-SSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HTTCTHHHHHHCC-HHHH-HH----HHHHHH-CTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HhcCHHHHHHHHH-cCCH-HH----HHHHHc-CCCcHHHHHHHHHHHHHHHcchh
Confidence 9888754332221 1233 32 234553 34 78999999999999997654
No 18
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=2.3e-22 Score=173.51 Aligned_cols=198 Identities=10% Similarity=0.107 Sum_probs=166.1
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhh-cCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYV-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF 102 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv-~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~ 102 (285)
+...++.|..++...+.+..|...|..++ .+.++...++..||+|+|+.+|.++++++|..|+|+|+|++.+++.++..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45566667666544466778888898887 45667888999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc----------------cCcHHH
Q psy355 103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ----------------SKKEKL 166 (285)
Q Consensus 103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~----------------~~~~~v 166 (285)
+.+.|++|+|+++|.+..+..+++.|+.+|.|+... +.....+.+ +|+++|+.++. ..+..+
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 999999999999998546789999999888888764 445555665 68999988653 136799
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHC-CcHHHHHHhcccC---CCCCccHHHHHHHHHHHHH
Q psy355 167 VIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE---DALDTEMNEHLLSALASLI 223 (285)
Q Consensus 167 ~~ka~~~l~~L~~~~~~~~~~l~~~-g~v~~L~~lL~~~---~~~d~~~~e~al~aL~~l~ 223 (285)
+.+|+.+|+||+..+++.++.+.+. |+|+.|+.+++.. +.-+.+.+|.+..+|.+|.
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 9999999999999888999999976 6789999999873 2236789999999999985
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.90 E-value=2.1e-22 Score=190.35 Aligned_cols=195 Identities=13% Similarity=0.178 Sum_probs=167.1
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcch-HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF 102 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dn-a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~ 102 (285)
+...+..|..++ .+.+..|+..|..++...++ ...+.+.||+|+|+.+|+++++.++..|+|+|.|++.+|+.++..
T Consensus 4 l~~lv~~L~s~~--~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQD--EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSC--THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCCC--HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 455667777653 47789999999999866555 448999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc--------cC--------cHHH
Q psy355 103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ--------SK--------KEKL 166 (285)
Q Consensus 103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~--------~~--------~~~v 166 (285)
+++.|++|+|+++|..+.++.++..|+|+|+|++.+ +.....+++ ||+++|+++|. ++ +..+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 999999999999999446789999999999999998 667777888 99999999993 32 4567
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHC-CcHHHHHHhcccC---CCCCccHHHHHHHHHHHHH
Q psy355 167 VIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE---DALDTEMNEHLLSALASLI 223 (285)
Q Consensus 167 ~~ka~~~l~~L~~~~~~~~~~l~~~-g~v~~L~~lL~~~---~~~d~~~~e~al~aL~~l~ 223 (285)
++.|+|+|+||+.. ++.++.+++. |++++|+.+|.+. ...+..+++.++.+|.++.
T Consensus 160 ~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 160 FFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 77999999999987 8899999998 9999999999861 0016778999999999886
No 20
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.89 E-value=9.3e-22 Score=185.59 Aligned_cols=226 Identities=11% Similarity=0.057 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHhhcCcc-hHHHHHHcCC-HHHHHhhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHh
Q psy355 39 DICIGALDNLSDYVCSID-YANDFLKMGG-LPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~d-na~~~~~~Gg-~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~~v~~~g~l~~L~~L 115 (285)
..+..|.+.|..++..-+ +...+...|| +|+|+.+|.+++++++..|+|+|+|++.+ ++.+++.+++.|++|+|+++
T Consensus 215 ~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~l 294 (458)
T 3nmz_A 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 294 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHH
Confidence 457889999999987655 4445656777 99999999999999999999999999985 78899999999999999998
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCChHhHHHHH-hcCcHHHHHHhhccCcH----HHHHHHHHHHHHHhc---CCchHHHH
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFI-KRDGFSVLLRCIQSKKE----KLVIKSCFLIACLCT---DNNQVKQV 187 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~-~~~gi~~L~~~L~~~~~----~v~~ka~~~l~~L~~---~~~~~~~~ 187 (285)
|.+..+..+++.|+.||.||+.+++.....+. ..||+++|+++|.+++. .++.+|+|+|++|+. .+++.++.
T Consensus 295 Ll~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 295 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp HTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 65546789999999999999987766667777 79999999999998654 599999999999997 78899999
Q ss_pred HHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHH
Q psy355 188 LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSV 267 (285)
Q Consensus 188 l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~i 267 (285)
+++.|++++|+.+|.++ +..+++.|+.+|.+|+..+++........ +....| .+.++. .+.++.+.+...
T Consensus 375 i~~~G~i~~Lv~LL~~~---~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~I~~L---v~LL~s--~~~~v~~~Aa~A 444 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSH---SLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSML---KNLIHS--KHKMIAMGSAAA 444 (458)
T ss_dssp HHHTTHHHHHHHHSSCS---CHHHHHHHHHHHHHHHSSCHHHHHHHHHH--THHHHH---HTTTTC--SSHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCC---ChHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHH---HHHHhC--CCHHHHHHHHHH
Confidence 99999999999999998 99999999999999997776543322111 111222 223332 345566777777
Q ss_pred HHHhcCC
Q psy355 268 LTEVFEE 274 (285)
Q Consensus 268 l~~~f~~ 274 (285)
|......
T Consensus 445 L~nL~~~ 451 (458)
T 3nmz_A 445 LRNLMAN 451 (458)
T ss_dssp HHHHHTC
T ss_pred HHHHHcC
Confidence 7666543
No 21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.89 E-value=2.5e-22 Score=200.02 Aligned_cols=187 Identities=13% Similarity=0.152 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHh-cCcHHHHHHh
Q psy355 38 KDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQ-TDFLNLLLTS 115 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~-~g~l~~L~~L 115 (285)
...+..|+..|.+++... ++...+++.||+|+|+.||.++++.||..|+++|+|++++.+ .+..+++ .|++|.|+.|
T Consensus 595 ~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~L 673 (810)
T 3now_A 595 ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALL 673 (810)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHH
Confidence 455678999999999874 678889999999999999999999999999999999998655 5666665 7999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh-cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK-RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV 194 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~-~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v 194 (285)
+.+ .+..+|+.|+|||||++.+++.+.+.+++ .||+++|+++|.+++.++|..|+|+|+|++.++++....+++.|++
T Consensus 674 L~s-~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i 752 (810)
T 3now_A 674 CED-EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIM 752 (810)
T ss_dssp GGC-SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHH
T ss_pred hcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence 997 67899999999999999988988999998 8999999999999999999999999999999888999999999999
Q ss_pred HHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 195 EQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 195 ~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
++|+.+|+.++..+.++.+.|+.+|.+++..+
T Consensus 753 ~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 753 ELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 99999997652236899999999999998655
No 22
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.88 E-value=1.9e-21 Score=186.74 Aligned_cols=188 Identities=15% Similarity=0.250 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355 38 KDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 116 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL 116 (285)
.+.+..|.+.|..++.. .++...++..|++|+|+.+|.++++.++..|+|+|||++.+++.+++.+++.|++++|+.+|
T Consensus 134 ~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL 213 (529)
T 3tpo_A 134 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALL 213 (529)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHH
Confidence 56788899999999765 45677899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC----CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCC
Q psy355 117 EHDS----NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 192 (285)
Q Consensus 117 ~~~~----~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g 192 (285)
.... ...+.+.++|++++++++..+........+++|.|+++|.+++..++..|+|+|++++.+.++..+.+++.|
T Consensus 214 ~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g 293 (529)
T 3tpo_A 214 AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG 293 (529)
T ss_dssp CSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTT
T ss_pred hccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhcc
Confidence 8532 346788999999999998766554444568899999999999999999999999999999888889999999
Q ss_pred cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 193 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 193 ~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
+++.|+.+|.++ +..++..++.+|.+|+.+++.
T Consensus 294 ~i~~Lv~lL~~~---~~~v~~~a~~aL~nl~~~~~~ 326 (529)
T 3tpo_A 294 VVPQLVKLLGAT---ELPIVTPALRAIGNIVTGTDE 326 (529)
T ss_dssp CHHHHHHHHTCS---CHHHHHHHHHHHHHHTTSCHH
T ss_pred chHHHHHHhcCC---ChhHHHHHHHHHHHHHccchH
Confidence 999999999998 999999999999999988864
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.88 E-value=1.3e-20 Score=180.11 Aligned_cols=189 Identities=15% Similarity=0.278 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh
Q psy355 38 KDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI 116 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL 116 (285)
.+.+..|++.|..++.. .++...++..|++|+|+.+|.++++.+|..|+|+|++++.+++.++..+++.|++|+|+.+|
T Consensus 132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL 211 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL 211 (528)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHH
Confidence 56788999999999886 57778899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355 117 EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 196 (285)
Q Consensus 117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~ 196 (285)
..+.+..++..|+|+|++++++.+.... ....|+++.|+.+|.+++..++..|+|+|++++.+.+...+.+++.|+++.
T Consensus 212 ~~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~ 290 (528)
T 4b8j_A 212 NEHTKLSMLRNATWTLSNFCRGKPQPSF-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290 (528)
T ss_dssp CTTCCHHHHHHHHHHHHHHHCSSSCCCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence 6557899999999999999998644333 345899999999999999999999999999999988888889999999999
Q ss_pred HHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355 197 MCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230 (285)
Q Consensus 197 L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~ 230 (285)
|+.+|.++ ++.+++.|+.+|.+|+..++...
T Consensus 291 Lv~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~ 321 (528)
T 4b8j_A 291 LVELLLHP---SPSVLIPALRTVGNIVTGDDAQT 321 (528)
T ss_dssp HHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHcCC---ChhHHHHHHHHHHHHHcCCHHHH
Confidence 99999998 89999999999999999887544
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.87 E-value=7.7e-21 Score=189.38 Aligned_cols=224 Identities=13% Similarity=0.082 Sum_probs=181.0
Q ss_pred CHHHHHHHHHHHHHhhcCcchHHHHH---HcCCHHHHHhhhcCC-CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHH
Q psy355 37 QKDICIGALDNLSDYVCSIDYANDFL---KMGGLPVLQPLLEGS-DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL 112 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~~dna~~~~---~~Gg~~~Lv~lL~s~-~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L 112 (285)
++..+..|.+.|..++...+....|. ..|++|+|+.||.++ +...+..|+++|+|++.+++..++.+++.|++|+|
T Consensus 549 ~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~L 628 (810)
T 3now_A 549 TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKI 628 (810)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Confidence 35678899999999876555444332 257999999999976 44556799999999999999999999999999999
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh-cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH-
Q psy355 113 LTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK-RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS- 190 (285)
Q Consensus 113 ~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~-~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~- 190 (285)
+.++.+ .++.+++.|+++|+||+.+ +..+..|++ .|++++|+.++.+++..+|+.|+|+|++|+.+++...+.+++
T Consensus 629 v~LL~s-~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~ 706 (810)
T 3now_A 629 EYYLME-DHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI 706 (810)
T ss_dssp HHHHHS-CCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS
T ss_pred HHHHcC-CCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999997 5679999999999999986 456777885 789999999999999999999999999999988889999998
Q ss_pred CCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHc-cChH-hhHHHHHHHHHHH
Q psy355 191 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKH-AGNE-VYHKELEHVNSVL 268 (285)
Q Consensus 191 ~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l-~~~~-e~~~~~~~~~~il 268 (285)
.|++++|+.+|.++ +.+++..|+.+|.+++..+++....-...+ .+ +.|. .+ +.++ .+.++++.+.+.|
T Consensus 707 ~g~I~~Lv~LL~s~---d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G-~i-~~L~----~LL~~~d~~~~~i~e~Al~aL 777 (810)
T 3now_A 707 ASWLDILHTLIANP---SPAVQHRGIVIILNMINAGEEIAKKLFETD-IM-ELLS----GLGQLPDDTRAKAREVATQCL 777 (810)
T ss_dssp TTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHTTCHHHHHHHHTST-HH-HHHT----TSCCCTTSTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCC---CHHHHHHHHHHHHHHHhCCHHHHHHHHHCC-CH-HHHH----HHHhCcccCcHHHHHHHHHHH
Confidence 89999999999999 999999999999999987764332222221 22 2222 33 3221 4677888777777
Q ss_pred HHh
Q psy355 269 TEV 271 (285)
Q Consensus 269 ~~~ 271 (285)
+..
T Consensus 778 ~~l 780 (810)
T 3now_A 778 AAA 780 (810)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.86 E-value=7.3e-20 Score=170.30 Aligned_cols=189 Identities=14% Similarity=0.238 Sum_probs=169.1
Q ss_pred CHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 37 QKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
+.+.+..|++.|..++.. .++...++..|++|.|+.+|+++++.+|..|+++|++++.+++.+++.+++.|++|.|+++
T Consensus 78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 157 (450)
T 2jdq_A 78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157 (450)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence 356788899999998874 4667778899999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCC-hHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDN-EECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV 194 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~-~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v 194 (285)
+.++.+..++..|+|+|++++++. +.....++ .++++.|+.++++++..++..|+|++++++...+.....+++.|++
T Consensus 158 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 236 (450)
T 2jdq_A 158 FSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 236 (450)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTH
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcH
Confidence 996567899999999999999876 33322233 7899999999999999999999999999999888888899999999
Q ss_pred HHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355 195 EQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA 229 (285)
Q Consensus 195 ~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~ 229 (285)
+.|+.+|.++ ++.+++.++.+|.+++..++..
T Consensus 237 ~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~ 268 (450)
T 2jdq_A 237 RRLVELLMHN---DYKVVSPALRAVGNIVTGDDIQ 268 (450)
T ss_dssp HHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHCCC---chhHHHHHHHHHHHHhhCChHH
Confidence 9999999988 9999999999999999888754
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.86 E-value=4.2e-20 Score=176.87 Aligned_cols=186 Identities=17% Similarity=0.204 Sum_probs=170.7
Q ss_pred CHHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 37 QKDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
+.+.+..|++.|..++... .+.......|++|.|+.+|.++++.++..|+|+|++++.+++...+.+++.|++|.|+.+
T Consensus 228 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l 307 (530)
T 1wa5_B 228 KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL 307 (530)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH
Confidence 3567888999999998764 444456668999999999999999999999999999999988888889999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHH
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 195 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~ 195 (285)
|.+ ++..++..|+++|++++.+++...+.+++.|+++.|+.+|++++..++..|+|+|++++.+++...+.+++.|+++
T Consensus 308 L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~ 386 (530)
T 1wa5_B 308 LSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 386 (530)
T ss_dssp GGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred HCC-CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 996 6789999999999999999998888899999999999999999999999999999999998888888999999999
Q ss_pred HHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 196 QMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 196 ~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
.|+.+|.++ +..++..++.+|.+++..+
T Consensus 387 ~L~~lL~~~---~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 387 PLVKLLEVA---EYKTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHHHHHS---CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHHHHhcC
Confidence 999999988 9999999999999999864
No 27
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=3.3e-20 Score=159.98 Aligned_cols=201 Identities=16% Similarity=0.120 Sum_probs=157.2
Q ss_pred CHHHHHhhhcCCCH--HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH
Q psy355 66 GLPVLQPLLEGSDP--ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL 143 (285)
Q Consensus 66 g~~~Lv~lL~s~~~--~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~ 143 (285)
.+|+++.+|+|+++ .++..|++.|.+++.+++..++.+.+.|++|+|+++|++ +++.++..|+|||.||+.+++.+.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence 58999999999988 999999999999999999999999999999999999997 678999999999999999999999
Q ss_pred HHHHhcCcHHHHHHhhc-cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC-------------CCCCc
Q psy355 144 KEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE-------------DALDT 209 (285)
Q Consensus 144 ~~f~~~~gi~~L~~~L~-~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~-------------~~~d~ 209 (285)
..+.+.||+++|+++|+ +++..+++.|+.+|.+|... +..+..+++ +++++|+.++..+ ...++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchH
Confidence 99999999999999998 47899999999999999764 566777776 5799999887411 01266
Q ss_pred cHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHH-ccChHhhHHHHHHHHHHHHH
Q psy355 210 EMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEK-HAGNEVYHKELEHVNSVLTE 270 (285)
Q Consensus 210 ~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~-l~~~~e~~~~~~~~~~il~~ 270 (285)
++++.|..+|.+|...+++....-+... ++.+.|-+.++. .+..+-.+...|-|.-+|..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~-Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~n 226 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCD-GLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTST-THHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCC-CcHHHHHHHHHhhhhcccchhHHHHHHHHHHHH
Confidence 8999999999999987765443333222 343444333332 11111123345556665554
No 28
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.86 E-value=3.4e-20 Score=179.12 Aligned_cols=199 Identities=16% Similarity=0.197 Sum_probs=168.3
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhc-CcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhC-CHHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVC-SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQN 101 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~-~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~ 101 (285)
+...+..|..+ +++.+..|...|..++. +.++...++..||+|+||.+|.++++.++..|+|+|+|++.+ |+.++.
T Consensus 50 i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 55566666543 35778889999999985 667888999999999999999999999999999999999986 799999
Q ss_pred HHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc------------------cCc
Q psy355 102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ------------------SKK 163 (285)
Q Consensus 102 ~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~------------------~~~ 163 (285)
.+++.|++|+|+.+|++..+..+++.|+++|.+++. ++.....++ .+|+++|++++. +.+
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHH-HHTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHH-hccHHHHHHHHhccccccccccccccccccccc
Confidence 999999999999999975678899999999999987 556666677 478999999872 235
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHC-CcHHHHHHhcccC---CCCCccHHHHHHHHHHHHHhcC
Q psy355 164 EKLVIKSCFLIACLCTDNNQVKQVLLSM-GMVEQMCVLIDIE---DALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 164 ~~v~~ka~~~l~~L~~~~~~~~~~l~~~-g~v~~L~~lL~~~---~~~d~~~~e~al~aL~~l~~~~ 226 (285)
.+++..|+++|.||+..+++.++.+++. |+++.|+.+|.+. ...+...++.|+.+|.+|....
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~ 272 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQV 272 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccc
Confidence 8999999999999999888889999985 6678999999751 1127789999999999998653
No 29
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.84 E-value=1.1e-19 Score=162.38 Aligned_cols=145 Identities=15% Similarity=0.181 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHH-hhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh
Q psy355 80 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT-SIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC 158 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~-LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~ 158 (285)
+-+..|+..|.+++.+ ......+.+.|++|+|+. +|.+ +++.+|..|+|+|++++.+++..++.+++.||+++|+.+
T Consensus 55 e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 6789999999999975 457778999999999999 9997 688999999999999999999999999999999999999
Q ss_pred hccC-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355 159 IQSK-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA 229 (285)
Q Consensus 159 L~~~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~ 229 (285)
|+++ +..++++|+|+|++++.+++...+.+++.|+++.|+.+|.++ +..++..|+.+|.+|+.++++.
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~---d~~v~~~A~~aLs~L~~~~~~~ 201 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLLVGHPEH 201 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCGGG
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCChHH
Confidence 9964 899999999999999999998899999999999999999998 9999999999999999887643
No 30
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.84 E-value=1.8e-19 Score=171.14 Aligned_cols=222 Identities=11% Similarity=0.060 Sum_probs=173.4
Q ss_pred CHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcC--CCHHHHHHHHHHHHHHhhCCHH---HHHHHHhcCcHH
Q psy355 37 QKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEG--SDPELRWRAAETVADIVQNNPF---SQNFIIQTDFLN 110 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s--~~~~vr~~A~~~lg~~a~nn~~---~q~~v~~~g~l~ 110 (285)
+.+.+..|+..|..++.. .++...+.+.||++.|+.+|.+ +++.++..|+++|++++.+++. .+..+++.|++|
T Consensus 279 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~ 358 (529)
T 1jdh_A 279 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 358 (529)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChh
Confidence 457788999999999876 3588889999999999999975 4589999999999999987654 577899999999
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHH--------------
Q psy355 111 LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC-------------- 176 (285)
Q Consensus 111 ~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~-------------- 176 (285)
.|+++|.++.+..+++.++|+|+|++.+.. .+..+++.|+++.|+.+|++++.++|++|+|+++|
T Consensus 359 ~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~ 437 (529)
T 1jdh_A 359 VVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 437 (529)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHH
Confidence 999999975556999999999999998654 55789999999999999999899999999888876
Q ss_pred --------HhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHH
Q psy355 177 --------LCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIK 248 (285)
Q Consensus 177 --------L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 248 (285)
|+. .++.+..+.+.|++++|+.+|.++ +..++..+..+|.++....+ ........ .++ + .+
T Consensus 438 ~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~~---~~~v~~~a~~~l~~l~~~~~-~~~~i~~~-~~~-~----~L 506 (529)
T 1jdh_A 438 GCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQDKE-AAEAIEAE-GAT-A----PL 506 (529)
T ss_dssp HHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSHH-HHHHHHHT-TCH-H----HH
T ss_pred HHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcCC---chHHHHHHHHHHHHHhcCHH-HHHHHHHc-CCh-H----HH
Confidence 332 356677899999999999999998 99999999999999985532 21111111 122 2 34
Q ss_pred HHccChHhhHHHHHHHHHHHHHh
Q psy355 249 EKHAGNEVYHKELEHVNSVLTEV 271 (285)
Q Consensus 249 ~~l~~~~e~~~~~~~~~~il~~~ 271 (285)
..++ ++++.++++++..+|.++
T Consensus 507 ~~l~-~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 507 TELL-HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHGG-GCSSHHHHHHHHHHHHHH
T ss_pred HHHh-cCCCHHHHHHHHHHHHhc
Confidence 4666 458999999999998764
No 31
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.82 E-value=9.1e-19 Score=169.15 Aligned_cols=163 Identities=12% Similarity=0.122 Sum_probs=145.1
Q ss_pred HcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC-ChH
Q psy355 63 KMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD-NEE 141 (285)
Q Consensus 63 ~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~-~~~ 141 (285)
..+++|+||.+|.++++.++..|+++|.+++.+++..+..+++.|+||+|+.+|++ .+..++..|+|||.||+.+ ++.
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHH
Confidence 46789999999999999999999999999999999999999999999999999997 6799999999999999986 688
Q ss_pred hHHHHHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC---------------C
Q psy355 142 CLKEFIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE---------------D 205 (285)
Q Consensus 142 ~~~~f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~---------------~ 205 (285)
+...+++.||+++|+++|++ ++..++..|+++|.+|+. .++.+..+++ |++++|+.+|..+ .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 89999999999999999997 578999999999999987 5678888885 5799999987210 0
Q ss_pred CCCccHHHHHHHHHHHHHhcChH
Q psy355 206 ALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 206 ~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
..+..+++.|..+|.+|+..+++
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~ 225 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSE 225 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHH
T ss_pred cccHHHHHHHHHHHHHHhcCCHH
Confidence 12578999999999999988764
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.81 E-value=3.6e-18 Score=167.52 Aligned_cols=184 Identities=11% Similarity=0.108 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcC-C-CHHHHHHHHHHHHHHhhCCH---HHHHHHHhcCcHH
Q psy355 37 QKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEG-S-DPELRWRAAETVADIVQNNP---FSQNFIIQTDFLN 110 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s-~-~~~vr~~A~~~lg~~a~nn~---~~q~~v~~~g~l~ 110 (285)
+.+.+..|...|.+++.. .++...+.+.||++.|+.+|.+ + .+.++..|+++|++++.+++ ..|..+++.|++|
T Consensus 276 d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~ 355 (644)
T 2z6h_A 276 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 355 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChH
Confidence 357788999999999876 3677889999999999999986 3 38999999999999998655 4677799999999
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHH----------------
Q psy355 111 LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLI---------------- 174 (285)
Q Consensus 111 ~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l---------------- 174 (285)
.|+++|.++.+..+++.|+|+|+|++.+.. .++.+++.|+++.|+++|.+++..+|++|+|++
T Consensus 356 ~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~ 434 (644)
T 2z6h_A 356 VVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 434 (644)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHH
T ss_pred HHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHH
Confidence 999999986567999999999999999754 458899999999999999986666655555544
Q ss_pred ------HHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 175 ------ACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 175 ------~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
.+|+.. +..+..+.+.|++++|+.+|.++ +..++..++.+|.++...
T Consensus 435 ~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~~---~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 435 GCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQD 487 (644)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHHTTCS---CHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhcC-HHHHHHHHhCCcHHHHHHHHcCC---CHHHHHHHHHHHHHHHcC
Confidence 445443 35667888999999999999988 899999999999999865
No 33
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.80 E-value=1.1e-17 Score=158.79 Aligned_cols=197 Identities=14% Similarity=0.202 Sum_probs=170.5
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 103 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v 103 (285)
+...++.|.+. .+.+.+..|+..|..+....++...+.+.||+|.|+.+|+++++.++..|+++|++++.+++..+..+
T Consensus 61 i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 139 (529)
T 1jdh_A 61 VSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139 (529)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 44445555443 24577889999999999888889999999999999999999999999999999999999888888899
Q ss_pred HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCc-HHHHHHHHHHHHHHhcCCc
Q psy355 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTDNN 182 (285)
Q Consensus 104 ~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~-~~v~~ka~~~l~~L~~~~~ 182 (285)
.+.|++|.|+++|.+ ++..++..++.+|++++.+++.....+.+.||++.|+++|++++ ...+..++.++.+++. .+
T Consensus 140 ~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~ 217 (529)
T 1jdh_A 140 RLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CS 217 (529)
T ss_dssp HHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-ST
T ss_pred HHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-Cc
Confidence 999999999999997 67899999999999999999999999999999999999999764 6777788899999986 56
Q ss_pred hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 183 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 183 ~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
..+..+++.|+++.|+.++.++ ++.+++.++.+|.++....
T Consensus 218 ~~~~~~~~~g~~~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 218 SNKPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp THHHHHHHTTHHHHHHTTTTSS---CHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHCCCHHHHHHHHhCC---ChHHHHHHHHHHHHHhcCC
Confidence 7889999999999999999877 7777777777777776543
No 34
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.78 E-value=3.7e-17 Score=160.30 Aligned_cols=198 Identities=14% Similarity=0.198 Sum_probs=172.6
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355 23 ELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF 102 (285)
Q Consensus 23 ~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~ 102 (285)
.+...+..|... .+.+.+..|+..|..++...++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus 57 ~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 135 (644)
T 2z6h_A 57 MVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135 (644)
T ss_dssp HHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHH
Confidence 355566666643 2467788999999999988888889999999999999999999999999999999999988778888
Q ss_pred HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCc-HHHHHHHHHHHHHHhcCC
Q psy355 103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTDN 181 (285)
Q Consensus 103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~-~~v~~ka~~~l~~L~~~~ 181 (285)
+++.|++|.|+++|++ .+..++..++.+|++++.+++.....+.+.||++.|+++|++++ .+++..++.++.+|+. .
T Consensus 136 v~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~ 213 (644)
T 2z6h_A 136 VRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-C 213 (644)
T ss_dssp HHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-C
T ss_pred HHHCCChHHHHHHHCc-CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-C
Confidence 9999999999999997 56788888889999999989999999999999999999999864 7888999999999986 5
Q ss_pred chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 182 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 182 ~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+..+..+++.|+++.|+.+|..+ +..+++.++.+|.+++...
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~---~~~~~~~a~~~L~nL~~~~ 255 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNLSDAA 255 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCS---CHHHHHHHHHHHHHHGGGC
T ss_pred cccHHHHHHCCCHHHHHHHHhcC---CHHHHHHHHHHHHHHhhcc
Confidence 67899999999999999999887 7778888888887776643
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.76 E-value=6.5e-17 Score=162.12 Aligned_cols=184 Identities=12% Similarity=0.103 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcC-CC-HHHHHHHHHHHHHHhhCCHH---HHHHHHhcCcHH
Q psy355 37 QKDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEG-SD-PELRWRAAETVADIVQNNPF---SQNFIIQTDFLN 110 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s-~~-~~vr~~A~~~lg~~a~nn~~---~q~~v~~~g~l~ 110 (285)
+.+.+..|+..|..++... ++...+.+.||++.|+.+|.+ ++ ..++..|+++||+++.+++. .|..+...|++|
T Consensus 412 d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~ 491 (780)
T 2z6g_A 412 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP 491 (780)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHH
Confidence 3577889999999998764 577788999999999999976 33 49999999999999987654 467889999999
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHH----------------------HH
Q psy355 111 LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKL----------------------VI 168 (285)
Q Consensus 111 ~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v----------------------~~ 168 (285)
.|+++|.++.+..+++.|+|+|+|++++. ..+..+++.|+++.|+.+|.+++..+ +.
T Consensus 492 ~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~ 570 (780)
T 2z6g_A 492 VVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570 (780)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHHSSH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhcCH-HHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHH
Confidence 99999998655699999999999999864 45678889999999999998765544 44
Q ss_pred HHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 169 KSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 169 ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
.++.+|.+|+. ++..+..+.+.|++++|+.+|.++ +..++..++.+|.+++..
T Consensus 571 ~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~---~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 571 ACTGALHILAR-DIHNRIVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQD 623 (780)
T ss_dssp HHHHHHHHHTT-SHHHHHHHHHTCCHHHHHHGGGCS---CHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhc-ChhhHHHHHHCCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcC
Confidence 55666666654 456777888999999999999998 999999999999999854
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.74 E-value=1.1e-15 Score=153.13 Aligned_cols=199 Identities=14% Similarity=0.203 Sum_probs=176.2
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHH
Q psy355 23 ELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNF 102 (285)
Q Consensus 23 ~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~ 102 (285)
.+...+..|.+. .+.+.+..|+..|..+....++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus 193 ~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 193 MVSAIVRTMQNT-NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred hHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 344455555543 2467889999999999888888888999999999999999999999999999999999998888999
Q ss_pred HHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCc-HHHHHHHHHHHHHHhcCC
Q psy355 103 IIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK-EKLVIKSCFLIACLCTDN 181 (285)
Q Consensus 103 v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~-~~v~~ka~~~l~~L~~~~ 181 (285)
+.+.|++|.|+.+|.+ .+..++..++.+|++++.+++.....+++.||++.|+.+|++++ ...+..++.++.+|+. .
T Consensus 272 v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~ 349 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-C 349 (780)
T ss_dssp HHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-S
T ss_pred HHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-C
Confidence 9999999999999996 67899999999999999999999999999999999999999864 6677788999999986 5
Q ss_pred chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 182 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 182 ~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+..+..+++.|+++.|+.+|.++ +..+++.++.+|.+|+...+
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~---~~~~~~~a~~~L~~L~~~~~ 392 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDP---SQRLVQNCLWTLRNLSDAAT 392 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCS---CHHHHHHHHHHHHHHHTTCT
T ss_pred hHHHHHHHHhchHHHHHHHHcCC---chHHHHHHHHHHHHHhccch
Confidence 67889999999999999999988 89999999999999997764
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.6e-15 Score=149.17 Aligned_cols=226 Identities=11% Similarity=0.130 Sum_probs=166.7
Q ss_pred CHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHH---HHHHHHHHHHHHh-hCCHHHHHHHHh---cCcH
Q psy355 37 QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPE---LRWRAAETVADIV-QNNPFSQNFIIQ---TDFL 109 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~---vr~~A~~~lg~~a-~nn~~~q~~v~~---~g~l 109 (285)
++..+..|.+.|..++.+.++...+++.||+++|+.+|.+.... +|..|+.+|++++ +.||.. .+-. .|++
T Consensus 470 s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI 547 (778)
T 3opb_A 470 SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAI 547 (778)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccch
Confidence 46788899999999999989999999999999999999987654 8999999999998 567764 2211 3999
Q ss_pred HHHHHhhccCCCH-------------HHHHHHHHHHHHHhhCCh----HhHHHHHhc-CcHHHHHHhhccCcHHHHHHHH
Q psy355 110 NLLLTSIEHDSNT-------------TVQVKSLYAVSCLVRDNE----ECLKEFIKR-DGFSVLLRCIQSKKEKLVIKSC 171 (285)
Q Consensus 110 ~~L~~LL~~~~~~-------------~v~~~a~~ALs~l~r~~~----~~~~~f~~~-~gi~~L~~~L~~~~~~v~~ka~ 171 (285)
|+|+.||..++.. -.+..|+.||.||+.... ...+.++.. |+++.|..+|.+++..+|+.|+
T Consensus 548 ~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~ 627 (778)
T 3opb_A 548 PFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTL 627 (778)
T ss_dssp HHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999832111 237799999999999762 335667875 9999999999999999999999
Q ss_pred HHHHHHhcCCchHH-HHHHHCC------cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh-hcccCcccHHHH
Q psy355 172 FLIACLCTDNNQVK-QVLLSMG------MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS-LCRLEPLNLKFK 243 (285)
Q Consensus 172 ~~l~~L~~~~~~~~-~~l~~~g------~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~-~~~~~~~~l~~~ 243 (285)
++++||+.+ +..+ +.+...+ .++.|+.++.++ |.++|..|..+|.+++..++.... ....++ ++ +.
T Consensus 628 elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~---D~~~r~AAagALAnLts~~~~ia~~ll~~~~-gi-~~ 701 (778)
T 3opb_A 628 ELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLS---DVESQRAVAAIFANIATTIPLIAKELLTKKE-LI-EN 701 (778)
T ss_dssp HHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHH-HH-HH
T ss_pred HHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCC---CHHHHHHHHHHHHHhcCCChHHHHHHHHccc-cH-HH
Confidence 999999974 4432 2333222 388999999998 999999999999999887775322 222211 22 22
Q ss_pred HHHHHHHccChHhhHHHHHHHHHHHHHhcC
Q psy355 244 LNFIKEKHAGNEVYHKELEHVNSVLTEVFE 273 (285)
Q Consensus 244 l~~~~~~l~~~~e~~~~~~~~~~il~~~f~ 273 (285)
+ ++-++..+++.+....+.-++...+.
T Consensus 702 L---l~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 702 A---IQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp H---HHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred H---HHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2 22332212456666666666666664
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.5e-15 Score=147.88 Aligned_cols=217 Identities=11% Similarity=0.145 Sum_probs=164.8
Q ss_pred HhHHHHHHHHHHhcCC---------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc------------------
Q psy355 4 ANRGFLLDALNSMMVN---------VGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSID------------------ 56 (285)
Q Consensus 4 e~~~~L~~al~~~~~d---------~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d------------------ 56 (285)
+.|+|-=|.|..++.+ +...++..++++....++ .....++..|..++...+
T Consensus 349 ~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~-s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~ 427 (778)
T 3opb_A 349 PKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMT-HCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXX 427 (778)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCT-THHHHHHHHHHHTTCCCCCCCCCCC-----------
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccc
Confidence 4488888888888722 233366677777753321 234445555555443211
Q ss_pred ---------------------hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 57 ---------------------YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 57 ---------------------na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
|...+.+.|++|+|+.++.++++.+|..|+|+|++++. ++.++..+++.|++|+|+.+
T Consensus 428 ~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~l 506 (778)
T 3opb_A 428 XXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEY 506 (778)
T ss_dssp -------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHH
T ss_pred cCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHH
Confidence 23456889999999999999999999999999999985 58899999999999999999
Q ss_pred hccCCCH--HHHHHHHHHHHHHhhCChHhHHHHHh---cCcHHHHHHhhcc-CcH-------------HHHHHHHHHHHH
Q psy355 116 IEHDSNT--TVQVKSLYAVSCLVRDNEECLKEFIK---RDGFSVLLRCIQS-KKE-------------KLVIKSCFLIAC 176 (285)
Q Consensus 116 L~~~~~~--~v~~~a~~ALs~l~r~~~~~~~~f~~---~~gi~~L~~~L~~-~~~-------------~v~~ka~~~l~~ 176 (285)
|.+.+.. .+|..|+.||++++-...+.. .|-. .|++++|+++|.. +.. .-+..|+.+|+|
T Consensus 507 L~s~~~~~~~~k~~AA~ALArLlis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTN 585 (778)
T 3opb_A 507 LANKQDIGEPIRILGCRALTRMLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTN 585 (778)
T ss_dssp TTCC---CCHHHHHHHHHHHHHHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHH
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHH
Confidence 9975332 289999999999986654433 3421 4899999999983 211 237799999999
Q ss_pred HhcCC----chHHHHHHHC-CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 177 LCTDN----NQVKQVLLSM-GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 177 L~~~~----~~~~~~l~~~-g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
|++.. .+.++.+++. |+++.|..+|.++ +..++..|+.++.+|+...
T Consensus 586 LAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~---n~~VrrAA~elI~NL~~~~ 637 (778)
T 3opb_A 586 LASSETSDGEEVCKHIVSTKVYWSTIENLMLDE---NVPLQRSTLELISNMMSHP 637 (778)
T ss_dssp HHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS---SHHHHHHHHHHHHHHHTSG
T ss_pred HhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC---CHHHHHHHHHHHHHHhCCc
Confidence 99975 3567888986 9999999999988 8899999999999999743
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.54 E-value=8.9e-13 Score=127.01 Aligned_cols=200 Identities=19% Similarity=0.264 Sum_probs=166.0
Q ss_pred HhHHHHHHHHHHhc---CCH--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc------------------hHHH
Q psy355 4 ANRGFLLDALNSMM---VNV--GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSID------------------YAND 60 (285)
Q Consensus 4 e~~~~L~~al~~~~---~d~--~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d------------------na~~ 60 (285)
|||+==-.+|++++ +.+ ...|+-.+.+|.+..++++-...+|+.|..+....+ ++..
T Consensus 37 eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~ 116 (651)
T 3grl_A 37 DDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI 116 (651)
T ss_dssp HHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHH
Confidence 33433334566665 333 234888889998887777777778888877654422 2334
Q ss_pred H-HHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHH-HHHHHHhc-CcHHHHHHhhccCCCHHHHHHHHHHHHHHhh
Q psy355 61 F-LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQT-DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR 137 (285)
Q Consensus 61 ~-~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~-~q~~v~~~-g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r 137 (285)
| .+.++++.|+.+|++++..+|..|+.+|..++.++|. .|+.++.. ++++.|+.+|+. +.+.+|-.|+..|+++++
T Consensus 117 f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTR 195 (651)
T ss_dssp HHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHT
T ss_pred HHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhc
Confidence 4 3467899999999999999999999999999999999 89999966 999999999995 578999999999999999
Q ss_pred CChHhHHHHHhcCcHHHHHHhhccC----cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC
Q psy355 138 DNEECLKEFIKRDGFSVLLRCIQSK----KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE 204 (285)
Q Consensus 138 ~~~~~~~~f~~~~gi~~L~~~L~~~----~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~ 204 (285)
+++..++.+.-.|+++.|+.++... ...+...+..++.+|++.+++.+.++.+.|+++.|+.+|..+
T Consensus 196 ~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~ 266 (651)
T 3grl_A 196 SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVG 266 (651)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCC
T ss_pred CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCC
Confidence 9999888887789999999999864 358899999999999999999999999999999999999865
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.44 E-value=1e-11 Score=119.71 Aligned_cols=219 Identities=17% Similarity=0.208 Sum_probs=170.4
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC--CCH
Q psy355 6 RGFLLDALNSMM----VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG--SDP 79 (285)
Q Consensus 6 ~~~L~~al~~~~----~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s--~~~ 79 (285)
+.||+..|..-. .+..+.+.+...-+.+. .-.++|..|+..|..+..+. ..-+..+|++.|+..|+. .+.
T Consensus 1 m~~~~~~~g~~~~~~~qs~~etI~~L~~Rl~~~-tl~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~~D~ 76 (651)
T 3grl_A 1 MNFLRGVMGGQSAGPQHTEAETIQKLCDRVASS-TLLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDRSDS 76 (651)
T ss_dssp -----------------CHHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCTTCH
T ss_pred ChHHHhhhCCCCCCCCCChhhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhcccccH
Confidence 357777776543 56677777777777662 23689999999999998642 244557889999999986 688
Q ss_pred HHHHHHHHHHHHHhhCCHH-----------------HHHHHH-hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH
Q psy355 80 ELRWRAAETVADIVQNNPF-----------------SQNFII-QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE 141 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~nn~~-----------------~q~~v~-~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~ 141 (285)
++...++.+|.++...++. ..+.++ +.+.++.|+.+|++ .+..+|..++..|+.++.+.+.
T Consensus 77 e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r~~ 155 (651)
T 3grl_A 77 EIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQLGP 155 (651)
T ss_dssp HHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcCcH
Confidence 9999999999988776543 223343 45899999999996 6889999999999999999988
Q ss_pred -hHHHHHhc-CcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCC-CCCccHHHHHHHH
Q psy355 142 -CLKEFIKR-DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED-ALDTEMNEHLLSA 218 (285)
Q Consensus 142 -~~~~f~~~-~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~-~~d~~~~e~al~a 218 (285)
.++.+... +|++.|+.+|+++...+|.+|..+|.+|+.++++.++.+.-.|+++.|.+++.... .....+.+-++..
T Consensus 156 ~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~l 235 (651)
T 3grl_A 156 QVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLIL 235 (651)
T ss_dssp HHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 67778855 89999999999999999999999999999999999999999999999999999750 0122678999999
Q ss_pred HHHHHhcChHH
Q psy355 219 LASLIKDSTEA 229 (285)
Q Consensus 219 L~~l~~~~~~~ 229 (285)
|.+|++.++..
T Consensus 236 l~nLLr~N~sN 246 (651)
T 3grl_A 236 LQNLLKNNNSN 246 (651)
T ss_dssp HHHHHTTCHHH
T ss_pred HHHHHhcCHHH
Confidence 99999999743
No 41
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.36 E-value=5e-12 Score=124.92 Aligned_cols=165 Identities=15% Similarity=0.233 Sum_probs=136.3
Q ss_pred CCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHH-hhccCCCHHHHHHHHHHHHHHhhC-ChHh
Q psy355 65 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLT-SIEHDSNTTVQVKSLYAVSCLVRD-NEEC 142 (285)
Q Consensus 65 Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~-LL~~~~~~~v~~~a~~ALs~l~r~-~~~~ 142 (285)
+.+.|++..|+|+++..|..||++|+++++ ++..++.+...|++++++. +|. +++..||..|++||.||+.+ .+..
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~-D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLT-DNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCchH
Confidence 357778888999999999999999999997 7888999999999988765 555 57899999999999999875 4666
Q ss_pred HHHHHhcCcHHHHHHhhccCc---------------------HHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhc
Q psy355 143 LKEFIKRDGFSVLLRCIQSKK---------------------EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLI 201 (285)
Q Consensus 143 ~~~f~~~~gi~~L~~~L~~~~---------------------~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL 201 (285)
...++..|++++|..+|++.. ..+...+++++.+|+.++......+...|.++.|+.+|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 777888999999998886421 12344677889999988888888999999999999998
Q ss_pred ccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355 202 DIEDALDTEMNEHLLSALASLIKDSTEAQS 231 (285)
Q Consensus 202 ~~~~~~d~~~~e~al~aL~~l~~~~~~~~~ 231 (285)
.+.+....+++..++.+|..+..++++...
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~ 221 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQ 221 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHH
Confidence 654222357999999999999999986544
No 42
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.22 E-value=1.4e-10 Score=114.62 Aligned_cols=183 Identities=13% Similarity=0.055 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHH-hhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHh
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQ-PLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv-~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~~v~~~g~l~~L~~L 115 (285)
.++|..|+..|..++++..+...+.+.|++++++ .+|..++.+||..|+++|+|++.. .+.+...+++.|++++|..+
T Consensus 48 ~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~ 127 (684)
T 4gmo_A 48 AKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHA 127 (684)
T ss_dssp CSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHH
Confidence 4789999999999999877788899999998765 589999999999999999999974 67888889999999999999
Q ss_pred hccCC-------------C-------HHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC---cHHHHHHHHH
Q psy355 116 IEHDS-------------N-------TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK---KEKLVIKSCF 172 (285)
Q Consensus 116 L~~~~-------------~-------~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~---~~~v~~ka~~ 172 (285)
|.+.. . ..+...++++|.+++.++..+...+...++++.|+..|.+. ...++..|+.
T Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~ 207 (684)
T 4gmo_A 128 AKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAIS 207 (684)
T ss_dssp HHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHH
T ss_pred HHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 86410 0 12334677889999999999999999999999999988543 5789999999
Q ss_pred HHHHHhcCCchHHHHHHHCCcHHHHHHhc--ccCCCCCccHHHHHHHHHHHHH
Q psy355 173 LIACLCTDNNQVKQVLLSMGMVEQMCVLI--DIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 173 ~l~~L~~~~~~~~~~l~~~g~v~~L~~lL--~~~~~~d~~~~e~al~aL~~l~ 223 (285)
+|+.++.+++...+.+.+.|....+..++ ... +...+..+...|.++.
T Consensus 208 ~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~---~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 208 CLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG---TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS---SCTTHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC---CcHHHHHHHHHHHhHh
Confidence 99999999999999999877543322222 233 4445667777888874
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.17 E-value=1.1e-09 Score=91.67 Aligned_cols=200 Identities=14% Similarity=0.091 Sum_probs=139.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHH
Q psy355 6 RGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRA 85 (285)
Q Consensus 6 ~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A 85 (285)
++|.+.++... .+-+.+...++.|.++ +...+..|+..|..+-. -++++.|+.+|.++++.+|..|
T Consensus 5 ~~~~~~~~~~~--~~~~~~~~L~~~L~~~--~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a 70 (211)
T 3ltm_A 5 PQFEKAAAPLR--ADPEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAA 70 (211)
T ss_dssp -------------CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHH
T ss_pred cccchhhhHhh--cCHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHH
Confidence 34555554332 2234455556666543 45778888888887643 2578999999999999999999
Q ss_pred HHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHH
Q psy355 86 AETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEK 165 (285)
Q Consensus 86 ~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~ 165 (285)
+++||.+.. .++++.|+.+|.+ +++.+|..|+++|+.+. . ...++.|+.+|.+++..
T Consensus 71 ~~aL~~~~~-----------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~ 127 (211)
T 3ltm_A 71 ADALGQIGD-----------ERAVEPLIKALKD-EDGWVRQSAAVALGQIG--D---------ERAVEPLIKALKDEDWF 127 (211)
T ss_dssp HHHHHHHCC-----------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSSHH
T ss_pred HHHHHhhCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHhCCCHH
Confidence 999998863 3578999999985 78899999999999873 2 24678889999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHH
Q psy355 166 LVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLN 245 (285)
Q Consensus 166 v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~ 245 (285)
+|..|+++++.+-. ...++.|..+|.++ ++.+|..++.+|..+- .+.. ...|.
T Consensus 128 vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~---~~~vr~~a~~aL~~~~--~~~~-----------~~~L~ 180 (211)
T 3ltm_A 128 VRIAAAFALGEIGD-----------ERAVEPLIKALKDE---DGWVRQSAADALGEIG--GERV-----------RAAME 180 (211)
T ss_dssp HHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHC--SHHH-----------HHHHH
T ss_pred HHHHHHHHHHHcCC-----------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhC--chhH-----------HHHHH
Confidence 99999999999832 24788999999888 8999999999999873 2221 12222
Q ss_pred HHHHHccChHhhHHHHHHHHHHHHHhcCC
Q psy355 246 FIKEKHAGNEVYHKELEHVNSVLTEVFEE 274 (285)
Q Consensus 246 ~~~~~l~~~~e~~~~~~~~~~il~~~f~~ 274 (285)
..+ + +++..+...+...|..+.+.
T Consensus 181 ~~l---~--d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 181 KLA---E--TGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHH---H--HCCHHHHHHHHHHHHC----
T ss_pred HHH---h--CCCHHHHHHHHHHHHhcCCC
Confidence 222 1 34556677777777665443
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.15 E-value=2.3e-09 Score=89.00 Aligned_cols=153 Identities=17% Similarity=0.187 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH
Q psy355 21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ 100 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q 100 (285)
.......++.|.+++ ...+..|+..|..+-. .++++.|+.+|.++++.+|..|+++||.+..
T Consensus 13 ~~~~~~~i~~L~~~~--~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS--YYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHHTTCSC--HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CcchHHHHHHhcCCC--HHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 344555666666644 4678888888887543 2568999999999999999999999998753
Q ss_pred HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355 101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 101 ~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~ 180 (285)
.++++.|+.+|.+ +++.+|..|+++|+.+. .+ ..++.|+.+|.+++..+|..|++++..+-.
T Consensus 75 -----~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKD-EDGWVRQSAAVALGQIG--DE---------RAVEPLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -----GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred -----HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 2578999999986 78999999999999873 22 367888999999999999999999998842
Q ss_pred CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHH
Q psy355 181 NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL 222 (285)
Q Consensus 181 ~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l 222 (285)
.+.++.|..+|.++ ++.+|..++.+|..+
T Consensus 137 ----------~~~~~~L~~~l~d~---~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 137 ----------ERAVEPLIKALKDE---DGWVRQSAADALGEI 165 (201)
T ss_dssp ----------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHh
Confidence 35788999999988 999999999999988
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.14 E-value=1.5e-09 Score=90.81 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 117 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~ 117 (285)
...+..|+..|..+-. .++++.|+.+|+++++.||..|+++||.+.. .++++.|+.++.
T Consensus 64 ~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~ 122 (211)
T 3ltm_A 64 AWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALK 122 (211)
T ss_dssp HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHh
Confidence 4566677777666532 2468999999999999999999999998853 357899999998
Q ss_pred cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHH
Q psy355 118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM 197 (285)
Q Consensus 118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L 197 (285)
+ +++.+|..|+++|+.+. .+ ..++.|..++++++..+|..|+++|..+-. ..+++.|
T Consensus 123 d-~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L 179 (211)
T 3ltm_A 123 D-EDWFVRIAAAFALGEIG--DE---------RAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAM 179 (211)
T ss_dssp C-SSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcC--CH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHH
Confidence 5 78999999999999982 22 367888999999999999999999999832 2467888
Q ss_pred HHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 198 CVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 198 ~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
..++..+ ++.+|..|..+|..+...++
T Consensus 180 ~~~l~d~---~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 180 EKLAETG---TGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHC---CHHHHHHHHHHHHC------
T ss_pred HHHHhCC---CHHHHHHHHHHHHhcCCCCC
Confidence 8999988 99999999999998876654
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.13 E-value=2.8e-09 Score=88.48 Aligned_cols=139 Identities=12% Similarity=0.093 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 117 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~ 117 (285)
...+..|+..|..+-. .++++.|+.+|.++++.||..|+++||.+.. ..+++.|+.+|.
T Consensus 59 ~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~ 117 (201)
T 3ltj_A 59 AWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALK 117 (201)
T ss_dssp HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHc
Confidence 4567777777766532 2468999999999999999999999998753 247899999998
Q ss_pred cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHH
Q psy355 118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM 197 (285)
Q Consensus 118 ~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L 197 (285)
+ +++.+|..|+++|+.+. . ...++.|..++.+++..+|..|++++..+- .+ .+++.|
T Consensus 118 d-~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L 174 (201)
T 3ltj_A 118 D-EDWFVRIAAAFALGEIG--D---------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAM 174 (201)
T ss_dssp C-SSHHHHHHHHHHHHHHT--C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHH
T ss_pred C-CCHHHHHHHHHHHHHhC--C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHH
Confidence 5 68999999999999973 2 246788899999999999999999999982 22 367888
Q ss_pred HHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 198 CVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 198 ~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
..++..+ ++.+|..|..+|..+-
T Consensus 175 ~~~l~d~---~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 175 EKLAETG---TGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHC---CHHHHHHHHHHHHHCC
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHH
Confidence 8899888 9999999999997753
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.08 E-value=2.7e-09 Score=93.12 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=38.7
Q ss_pred cHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 151 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 151 gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
.++.|+.+|++++..+|..|++++..+....+ .+++.|+.+|..+ ++.+|..++.+|..+.
T Consensus 160 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~---~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 160 TIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK---NEEVRIEAIIGLSYRK 220 (280)
T ss_dssp CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS---CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC---CHHHHHHHHHHHHHhC
Confidence 56666666666666666666666666532222 3456677777666 6777777777776654
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.03 E-value=1.8e-08 Score=87.85 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=68.6
Q ss_pred CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHH
Q psy355 107 DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 186 (285)
Q Consensus 107 g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~ 186 (285)
+++|.|+.++.+ ++..+|..|+++|+.+..+.+ ..++.|+.+|++++..+|..|+++|..+..
T Consensus 159 ~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~------- 221 (280)
T 1oyz_A 159 ATIPLLINLLKD-PNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------- 221 (280)
T ss_dssp CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-------
Confidence 477888888774 567788888888877643222 245788899998899999999999998741
Q ss_pred HHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 187 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 187 ~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
..+++.|+.+|..+ + ++..+..+|..+-
T Consensus 222 ----~~~~~~L~~~l~d~---~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 222 ----KRVLSVLCDELKKN---T--VYDDIIEAAGELG 249 (280)
T ss_dssp ----GGGHHHHHHHHTSS---S--CCHHHHHHHHHHC
T ss_pred ----HhhHHHHHHHhcCc---c--HHHHHHHHHHhcC
Confidence 35788888888765 4 7888888888763
No 49
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.88 E-value=2.8e-09 Score=107.27 Aligned_cols=174 Identities=12% Similarity=0.094 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC
Q psy355 41 CIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS 120 (285)
Q Consensus 41 ~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~ 120 (285)
+..|...|..++.... ..+.. ..++.+..+++++++.+|..|+++||+++.+.+..... .-.+++|.|+.++.+ +
T Consensus 338 r~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d-~ 412 (852)
T 4fdd_A 338 RKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSD-K 412 (852)
T ss_dssp HHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTC-S
T ss_pred HHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCC-C
Confidence 5556666666554322 12111 34677778889999999999999999999987753222 224688999999985 7
Q ss_pred CHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC-chHHHHHHHCCcHHHHHH
Q psy355 121 NTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-NQVKQVLLSMGMVEQMCV 199 (285)
Q Consensus 121 ~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~-~~~~~~l~~~g~v~~L~~ 199 (285)
++.||..|+|+|++++...+.......-.+.++.|+..|.++++++|..|++++.+++... +....++ .++++.|+.
T Consensus 413 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~ 490 (852)
T 4fdd_A 413 KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVF 490 (852)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHH
Confidence 8999999999999998753321111111356788889998889999999999999998652 2233333 357788888
Q ss_pred hcccCCCCCccHHHHHHHHHHHHHh
Q psy355 200 LIDIEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 200 lL~~~~~~d~~~~e~al~aL~~l~~ 224 (285)
++... +.+....++.++..++.
T Consensus 491 ~l~~~---~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 491 AFSKY---QHKNLLILYDAIGTLAD 512 (852)
T ss_dssp HHHHC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHh---ChHHHHHHHHHHHHHHH
Confidence 88877 66666777888888864
No 50
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.85 E-value=1.6e-08 Score=101.74 Aligned_cols=180 Identities=16% Similarity=0.181 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHHHhhcCcchHHHHHHc---CCHHHHHhhh-----------cC-----------CCHHHHHHHHHHHHH
Q psy355 37 QKDICIGALDNLSDYVCSIDYANDFLKM---GGLPVLQPLL-----------EG-----------SDPELRWRAAETVAD 91 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~~dna~~~~~~---Gg~~~Lv~lL-----------~s-----------~~~~vr~~A~~~lg~ 91 (285)
+++.+..|++-+..+++..... .+.+- ..+|.++..+ .. ++..+|..|+.+|+.
T Consensus 269 ~~~vr~~a~e~l~~l~~~~~~~-~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQPICK-DVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp SHHHHHHHHHHHHHHTTSTTHH-HHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 3567888888888888753222 22211 2345555555 22 233579999999999
Q ss_pred HhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHH
Q psy355 92 IVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSC 171 (285)
Q Consensus 92 ~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~ 171 (285)
++...+ +.++. .++|.+..++.+ ++..+|..|+++|++++.+.+.....+. .+.++.++.++++++..+|..|+
T Consensus 348 la~~~~---~~~~~-~l~~~l~~~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~ 421 (852)
T 4fdd_A 348 LANVYR---DELLP-HILPLLKELLFH-HEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITC 421 (852)
T ss_dssp HHHHHG---GGGHH-HHHHHHHHHHTC-SSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHhcc---HHHHH-HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 997543 12222 467778888875 6789999999999999998876444332 45789999999999999999999
Q ss_pred HHHHHHhcCCch--HHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 172 FLIACLCTDNNQ--VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 172 ~~l~~L~~~~~~--~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
|+++.++...+. ...++ .++++.|+..|..+ ++.+++.++.+|.+++...+.
T Consensus 422 ~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~---~~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 422 WTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDS---NKRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp HHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHhhH
Confidence 999998864211 11111 25778888888877 899999999999999976643
No 51
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.85 E-value=1.6e-10 Score=90.03 Aligned_cols=120 Identities=9% Similarity=0.101 Sum_probs=91.4
Q ss_pred cCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhH
Q psy355 64 MGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL 143 (285)
Q Consensus 64 ~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~ 143 (285)
.+.++.++.+|+++++.+|..|+++||.+... .++.|+.+|.+ +++.+|..|+|+|+++. .+
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d-~~~~vR~~A~~aL~~~~--~~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSN-EDWRIRGAAAWIIGNFQ--DE--- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGC-SCHHHHHHHHHHHGGGC--SH---
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcC-CCHHHHHHHHHHHHhcC--CH---
Confidence 45678899999999999999999999976421 36899999985 78999999999999974 22
Q ss_pred HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHH
Q psy355 144 KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221 (285)
Q Consensus 144 ~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~ 221 (285)
..++.|+.+|++++..+|..|++++..+.. ...++.|..+|+.+ +..++..+..+|..
T Consensus 73 ------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~---~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 ------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETG---TGFARKVAVNYLET 130 (131)
T ss_dssp ------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSC---CTHHHHHHHHHGGG
T ss_pred ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC---CHHHHHHHHHHHHh
Confidence 247788899999999999999999998742 23678899999887 89999999988754
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.81 E-value=4.3e-08 Score=95.04 Aligned_cols=177 Identities=16% Similarity=0.190 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~ 118 (285)
..+..|+..|..+. ..+.+..+ ++.+.++|.++++.||..|+++++++...+|. .+-+.|++|.|..+|.
T Consensus 101 ~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~- 170 (591)
T 2vgl_B 101 LIRALAVRTMGCIR-VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIA- 170 (591)
T ss_dssp HHHHHHHHHHHTCC-SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHcCC-hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhC-
Confidence 34555555555443 22333332 46788999999999999999999999998775 2333578999999998
Q ss_pred CCCHHHHHHHHHHHHHHhhCChHh---------HHHHHh----------------------------cCcHHHHHHhhcc
Q psy355 119 DSNTTVQVKSLYAVSCLVRDNEEC---------LKEFIK----------------------------RDGFSVLLRCIQS 161 (285)
Q Consensus 119 ~~~~~v~~~a~~ALs~l~r~~~~~---------~~~f~~----------------------------~~gi~~L~~~L~~ 161 (285)
++++.|+..|+++|+.++..++.. ...++. ...++.+..+|++
T Consensus 171 d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~ 250 (591)
T 2vgl_B 171 DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSH 250 (591)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCS
T ss_pred CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcC
Confidence 578999999999999998876521 222221 1234556666778
Q ss_pred CcHHHHHHHHHHHHHHhcC---CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHH
Q psy355 162 KKEKLVIKSCFLIACLCTD---NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230 (285)
Q Consensus 162 ~~~~v~~ka~~~l~~L~~~---~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~ 230 (285)
.+..++..|++++.++... +++..+.+. ..+.++|+.++. + ++.+|-.++.+|..+....|+.+
T Consensus 251 ~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~---d~~vr~~aL~~l~~i~~~~p~~~ 317 (591)
T 2vgl_B 251 ANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-G---EPEVQYVALRNINLIVQKRPEIL 317 (591)
T ss_dssp STTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S---CHHHHHHHHHHHHHHHHHCCSTT
T ss_pred CChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-C---CccHHHHHHHHHHHHHHhChHHH
Confidence 8899999999999998742 344444433 356678887764 6 88999999999999998877543
No 53
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.80 E-value=6e-07 Score=80.14 Aligned_cols=182 Identities=15% Similarity=0.167 Sum_probs=143.6
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC
Q psy355 18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSD-YVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN 96 (285)
Q Consensus 18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~-lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn 96 (285)
..+..+..++++.|.+. +.+++..+|-.|.. +.++.+.|..|+..||+..|++.....+...+..++++++++.-..
T Consensus 114 tsps~ra~~iiekL~~~--~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v 191 (339)
T 3dad_A 114 TQLSVRVNAILEKLYSS--SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV 191 (339)
T ss_dssp ECHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH
T ss_pred cCcHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc
Confidence 56778889999999853 46789999999999 5688999999999999999999999999999999999999999654
Q ss_pred HHHHHHHH-hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh-------cCc---HHHHHHhhc---cC
Q psy355 97 PFSQNFII-QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK-------RDG---FSVLLRCIQ---SK 162 (285)
Q Consensus 97 ~~~q~~v~-~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~-------~~g---i~~L~~~L~---~~ 162 (285)
.- -+.++ ....|..+..++.+ .+..|.+.|+.-|-+++-..+.....+.+ ..| ++.|+.+|+ +.
T Consensus 192 ~G-m~gvvs~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~ 269 (339)
T 3dad_A 192 DG-MLGVVAHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA 269 (339)
T ss_dssp HH-HHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC
T ss_pred cc-ccchhCCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC
Confidence 43 43444 45688888999995 77899999999999998876654443332 223 789999998 67
Q ss_pred cHHHHHHHHHHHHHHhcCCc------hHHHHHHHCCcHHHHHHhccc
Q psy355 163 KEKLVIKSCFLIACLCTDNN------QVKQVLLSMGMVEQMCVLIDI 203 (285)
Q Consensus 163 ~~~v~~ka~~~l~~L~~~~~------~~~~~l~~~g~v~~L~~lL~~ 203 (285)
+..++.+|..+|..+..+-| +....+-+.|+=..+...|++
T Consensus 270 D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 270 DPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 99999999999999887755 233445556655556665654
No 54
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.77 E-value=1.6e-07 Score=90.94 Aligned_cols=179 Identities=13% Similarity=0.177 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH
Q psy355 19 NVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP 97 (285)
Q Consensus 19 d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~ 97 (285)
.+...+|+.+ .++ +++.+..++..+.++.-. .|. ..+++.+++++++++..+|..+...++.++..++
T Consensus 13 ~e~~~i~~~L---~~~--~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~ 81 (591)
T 2vgl_B 13 GEIFELKAEL---NNE--KKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP 81 (591)
T ss_dssp SHHHHHHHHT---TSS--CHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH
T ss_pred ChHHHHHHHH---cCC--CHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc
Confidence 4555555554 332 356788888888776432 221 2357889999999999999999999999998776
Q ss_pred HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355 98 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 177 (285)
Q Consensus 98 ~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L 177 (285)
... .-+++.|.+-|.+ +++.+|..|+.+|+++. .+.....+ ++.+.++|.++++.+|++|++++..+
T Consensus 82 e~~-----~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i 148 (591)
T 2vgl_B 82 DMA-----IMAVNSFVKDCED-PNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKL 148 (591)
T ss_dssp HHH-----HTTHHHHGGGSSS-SSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred hHH-----HHHHHHHHHHcCC-CCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 643 2246778888885 78999999999999984 44433333 57788999999999999999999999
Q ss_pred hcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 178 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 178 ~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
...+|+... +.++++.|..+|..+ ++.++..|+.+|..+...++
T Consensus 149 ~~~~p~~~~---~~~~~~~l~~lL~d~---d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 149 HDINAQMVE---DQGFLDSLRDLIADS---NPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHSSCCCHH---HHHHHHHHHHTTSCS---CHHHHHHHHHHHHHHTTSCC
T ss_pred HhhChhhcc---cccHHHHHHHHhCCC---ChhHHHHHHHHHHHHHhhCC
Confidence 988776442 357889999999988 99999999999999998775
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.76 E-value=1.2e-06 Score=85.34 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=118.3
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
.+..|.+-|+++++.+|..|+++||++. ++... ..++|.+.++|.+ +++.||++|+.|+..+.+.+|....
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~-----~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~p~~v~- 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMC-----RDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRKVPELME- 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHH-----HHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHCGGGGG-
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHH-----HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHChHHHH-
Confidence 3677888899999999999999999998 35432 3468889999986 7899999999999999998886543
Q ss_pred HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccC------------CCCCccHHH
Q psy355 146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIE------------DALDTEMNE 213 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~------------~~~d~~~~e 213 (285)
+.++.+..+|.+.++.++..|++++..++..+|+....+. .+++.++.+|..- ...++-.+.
T Consensus 179 ----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 179 ----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp ----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred ----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 4567778889889999999999999999987766544443 6788888877630 012677888
Q ss_pred HHHHHHHHHHhcChH
Q psy355 214 HLLSALASLIKDSTE 228 (285)
Q Consensus 214 ~al~aL~~l~~~~~~ 228 (285)
.++++|..+....|.
T Consensus 253 ~il~~L~~l~~~~~~ 267 (618)
T 1w63_A 253 RILRLLRILGRNDDD 267 (618)
T ss_dssp HHHHHHHHHTTTCHH
T ss_pred HHHHHHHHhCCCCHH
Confidence 999999999887765
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.68 E-value=1e-06 Score=85.82 Aligned_cols=176 Identities=15% Similarity=0.145 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~ 118 (285)
-.+..|+..|..+.. .+.+. ..++.+.++|.++++.||..|+.+++++...+|..- .++++.+..+|..
T Consensus 122 ~vr~lAL~~L~~i~~-~~~~~-----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D 190 (618)
T 1w63_A 122 FVQGLALCTLGCMGS-SEMCR-----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNE 190 (618)
T ss_dssp HHHHHHHHHHHHHCC-HHHHH-----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTC
T ss_pred hHHHHHHHHHHhcCC-HHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCC
Confidence 445566666666552 22222 236788899999999999999999999999888522 2688888899984
Q ss_pred CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc---------------CcHHHHHHHHHHHHHHhcCCch
Q psy355 119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS---------------KKEKLVIKSCFLIACLCTDNNQ 183 (285)
Q Consensus 119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~---------------~~~~v~~ka~~~l~~L~~~~~~ 183 (285)
.++.|+..|+++|+.++..++.....|. .-++.+++.|.. .++-+|.++..+++.++..+|.
T Consensus 191 -~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~ 267 (618)
T 1w63_A 191 -KNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD 267 (618)
T ss_dssp -CCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH
T ss_pred -CCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH
Confidence 7899999999999999887665433443 445655555542 3566666666666666655432
Q ss_pred HHH-------HH----------------------HH--------CCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 184 VKQ-------VL----------------------LS--------MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 184 ~~~-------~l----------------------~~--------~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
... .+ .. ..++..|..+|.++ ++.+|..++.+|..++...
T Consensus 268 ~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~---d~~vr~~aL~~L~~i~~~~ 344 (618)
T 1w63_A 268 SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNN---DKNIRYVALTSLLKTVQTD 344 (618)
T ss_dssp HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCS---STTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHHhhC
Confidence 111 00 00 13567888888888 9999999999999999888
Q ss_pred hHHHh
Q psy355 227 TEAQS 231 (285)
Q Consensus 227 ~~~~~ 231 (285)
|..+.
T Consensus 345 p~~~~ 349 (618)
T 1w63_A 345 HNAVQ 349 (618)
T ss_dssp HHHHG
T ss_pred HHHHH
Confidence 76553
No 57
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.66 E-value=2.8e-07 Score=78.80 Aligned_cols=173 Identities=14% Similarity=0.147 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHhhcC-cch-HHHHHHcCCHHHHHhhhc-CCCHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHH
Q psy355 38 KDICIGALDNLSDYVCS-IDY-ANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLL 113 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~-~dn-a~~~~~~Gg~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~L~ 113 (285)
-..|..|+..|..+++. .+. ..++.+ .++.|..+|. .+++.||..|+.++|.++..- +.....+ ..++|.|+
T Consensus 29 w~~R~~a~~~L~~l~~~~~~~~~~~~~~--i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~ll 104 (242)
T 2qk2_A 29 WTLRKESLEVLEKLLTDHPKLENGEYGA--LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPSLL 104 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCSSBCCCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCCCCHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHH
Confidence 47888999999998865 111 112222 2567778884 899999999999999999631 1122222 23899999
Q ss_pred HhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-Cch--HHHHHHH
Q psy355 114 TSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQ--VKQVLLS 190 (285)
Q Consensus 114 ~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~--~~~~l~~ 190 (285)
..+.. ++..+|..|..||.+++...+. .. .++.+...|++.++.+|..++.+|..++.. +|. ...++-
T Consensus 105 ~~l~d-~~~~vr~~a~~aL~~~~~~~~~--~~-----ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~- 175 (242)
T 2qk2_A 105 EKFKE-KKPNVVTALREAIDAIYASTSL--EA-----QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLK- 175 (242)
T ss_dssp HGGGC-CCHHHHHHHHHHHHHHHTTSCH--HH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHH-
T ss_pred HHHcC-CCHHHHHHHHHHHHHHHHcCCH--HH-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHH-
Confidence 99985 7789999999999999876432 22 357788899999999999999999997655 343 233443
Q ss_pred CCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 191 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 191 ~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
.+++.|+.+|..+ +..+|..|..++..+...-+
T Consensus 176 -~l~p~l~~~l~D~---~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 176 -LLTTSLVKTLNEP---DPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp -HHHHHHHHHHTSS---CHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHcC
Confidence 5889999999888 99999999999999886554
No 58
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.60 E-value=3.8e-07 Score=78.93 Aligned_cols=180 Identities=13% Similarity=0.125 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHH-hhcC-cch---HHHHHHcCCHHHHHhhh-cCCCHHHHHHHHHHHHHHhhCC--HHHH-HHHHhcCc
Q psy355 38 KDICIGALDNLSD-YVCS-IDY---ANDFLKMGGLPVLQPLL-EGSDPELRWRAAETVADIVQNN--PFSQ-NFIIQTDF 108 (285)
Q Consensus 38 ~~~~~~al~~L~~-lv~~-~dn---a~~~~~~Gg~~~Lv~lL-~s~~~~vr~~A~~~lg~~a~nn--~~~q-~~v~~~g~ 108 (285)
-.+|..|+..|.. ++++ .+. ..++.. .+..|.+.| +.+++.|+..|+.+||.++.+- +..+ .+.. -+
T Consensus 30 w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~--~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~--~l 105 (249)
T 2qk1_A 30 WKDRVEALEEFWDSVLSQTKKLKSTSQNYSN--LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS--LV 105 (249)
T ss_dssp HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCcccHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--HH
Confidence 4788999999999 8753 111 112222 256777788 6889999999999999999632 2222 3332 27
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc---hHH
Q psy355 109 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN---QVK 185 (285)
Q Consensus 109 l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~---~~~ 185 (285)
+|.++..+.. +...|+..+..|+-+++...++....-.-...++.|...|+++++.+|..++.+|..++...+ ...
T Consensus 106 lp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l 184 (249)
T 2qk1_A 106 FTPLLDRTKE-KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL 184 (249)
T ss_dssp HHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhH
Confidence 9999999985 678999999999999988653211000001245677888999999999999999998887644 222
Q ss_pred HHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 186 QVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 186 ~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
...+...+++.|..++..+ +..+|+.|..+|..+...
T Consensus 185 ~~~l~~~iip~l~~~l~D~---~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 185 QRYLKDEVVPIVIQIVNDT---QPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHTTTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHH
Confidence 2333357899999999888 999999999999988743
No 59
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.59 E-value=1e-06 Score=83.82 Aligned_cols=149 Identities=9% Similarity=0.058 Sum_probs=114.7
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
.+|.+..+++++++.||..|+.++|.++...+. .......+|.|..++.. ++..+|..|+.+|+.++...++.
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~--- 237 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASD-EQDSVRLLAVEACVNIAQLLPQE--- 237 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTC-SCHHHHTTHHHHHHHHHHHSCHH---
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCHH---
Confidence 356666778889999999999999999875432 12235688999988885 67899999999999988765432
Q ss_pred HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
......++.+..++++++.++|..|+.++..++..-+. ......+++.+..++..+ ++.+|..++.+|..++..
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDC---EAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHH
Confidence 12234678888888888999999999999998764211 122345789999999887 899999999999999876
Q ss_pred Ch
Q psy355 226 ST 227 (285)
Q Consensus 226 ~~ 227 (285)
.+
T Consensus 312 ~~ 313 (588)
T 1b3u_A 312 LS 313 (588)
T ss_dssp SC
T ss_pred hC
Confidence 53
No 60
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.59 E-value=2.6e-06 Score=81.06 Aligned_cols=191 Identities=10% Similarity=0.070 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH
Q psy355 19 NVGAELEKIIKTLKENQD-QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP 97 (285)
Q Consensus 19 d~~~~mk~~l~~l~~~~~-~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~ 97 (285)
++....++.++.|....+ +++.+..+...|..++..+.... .....++.|..++.++++.||..|+.+|++++...+
T Consensus 42 ~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~--~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~ 119 (588)
T 1b3u_A 42 GVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE--YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS 119 (588)
T ss_dssp CHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG--GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCC
Confidence 333444556666654433 34567777777776654322111 112345666677788999999999999999998765
Q ss_pred HHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHH
Q psy355 98 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 177 (285)
Q Consensus 98 ~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L 177 (285)
..+ +..-.+|.+..+..+ ++..+|..|+..++.++.+.+... ....++.+..+++++++.+|..|+.+++.+
T Consensus 120 ~~~---~~~~l~~~l~~l~~~-~~~~~R~~a~~~l~~~~~~~~~~~----~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l 191 (588)
T 1b3u_A 120 PSD---LEAHFVPLVKRLAGG-DWFTSRTSACGLFSVCYPRVSSAV----KAELRQYFRNLCSDDTPMVRRAAASKLGEF 191 (588)
T ss_dssp HHH---HHHTHHHHHHHHHTC-SSHHHHHHHGGGHHHHTTTSCHHH----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 421 222345555555543 455666666666666655443221 122345555666666666666666666666
Q ss_pred hcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 178 CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 178 ~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
+...+.. .....+++.+..++..+ +..+|..|+.+|..+...
T Consensus 192 ~~~~~~~---~~~~~l~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 192 AKVLELD---NVKSEIIPMFSNLASDE---QDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp HHTSCHH---HHHHTHHHHHHHHHTCS---CHHHHTTHHHHHHHHHHH
T ss_pred HHHhcHH---hHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHh
Confidence 5442211 11224455555555554 555666666665555543
No 61
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.55 E-value=6.8e-08 Score=74.95 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=74.4
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
.++.|+.+|+++++.||..|+++||++.. + ++++.|+.+|.+ ++..||..|+++|+.+. .+
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d-~~~~VR~~A~~aL~~~~--~~----- 103 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLED-DSGFVRSGAARSLEQIG--GE----- 103 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHH-CCTHHHHHHHHHHHHHC--SH-----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcC-CCHHHHHHHHHHHHHhC--cH-----
Confidence 37999999999999999999999998762 2 258999999985 67899999999999974 22
Q ss_pred HHhcCcHHHHHHhhccCcHHHHHHHHHHHHH
Q psy355 146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC 176 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~ 176 (285)
..++.|+.+|++++..+|..|+++|..
T Consensus 104 ----~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 104 ----RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ----HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ----HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 346788899998899999999998764
No 62
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.53 E-value=3e-06 Score=71.77 Aligned_cols=172 Identities=12% Similarity=0.140 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHHHhhcCcchHHHH-HHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 37 QKDICIGALDNLSDYVCSIDYANDF-LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 37 ~~~~~~~al~~L~~lv~~~dna~~~-~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
+...+..+|..|++++...|-.-+. .--.+++.+++++.+++..|-..|+++|+++..|.|-.-+.+.+ ++..|..+
T Consensus 46 D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dl 123 (265)
T 3b2a_A 46 DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSL 123 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHH
Confidence 3467899999999999875433322 22346899999999999999999999999999998876666655 67888999
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC--CchHHHHHHHCCc
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD--NNQVKQVLLSMGM 193 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~--~~~~~~~l~~~g~ 193 (285)
+.+ ++.-++..|+-.++.+ +-... .. +.+..+.+++.|.+.++|.-+..++.+++.. ++... .++
T Consensus 124 ik~-~~~il~~eaae~Lgkl-kv~~~-~~-----~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~-----~~I 190 (265)
T 3b2a_A 124 LES-PDDMMRIETIDVLSKL-QPLED-SK-----LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL-----TLI 190 (265)
T ss_dssp TTS-CCHHHHHHHHHHHHHC-CBSCC-CH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG-----GGT
T ss_pred hcC-CCchHHHHHHHHhCcC-Ccccc-hH-----HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH-----HHH
Confidence 985 7889999999999998 21111 11 2356778999999999999999999999863 34443 345
Q ss_pred HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 194 v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+.-+-.+|++. |+.+++.|+.+|..+++..
T Consensus 191 ~~eI~elL~~e---D~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 191 LDEIPSLLQND---NEFIVELALDVLEKALSFP 220 (265)
T ss_dssp TTTHHHHHTCS---CHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHHHHcCc
Confidence 56677889998 9999999999999998764
No 63
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.51 E-value=1.9e-06 Score=85.94 Aligned_cols=180 Identities=12% Similarity=0.176 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH-HHHHHHHhcCcHHHHHHhhc
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLLLTSIE 117 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~-~~q~~v~~~g~l~~L~~LL~ 117 (285)
..+..|...|..++.... ..+. -..++.+...++++++.+|..|++++|.++.+.. ..-...+. .++|.|+..+.
T Consensus 346 ~~r~~a~~~L~~l~~~~~--~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~ 421 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG--NHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN 421 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHHcc--HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC
Confidence 355666666666654322 1111 1234566667889999999999999999997742 32222222 47899999998
Q ss_pred cCCCHHHHHHHHHHHHHHhhCChHhH--HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC-----chHHHHHHH
Q psy355 118 HDSNTTVQVKSLYAVSCLVRDNEECL--KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-----NQVKQVLLS 190 (285)
Q Consensus 118 ~~~~~~v~~~a~~ALs~l~r~~~~~~--~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~-----~~~~~~l~~ 190 (285)
. +++.+|..++|+|+.++....+.. ..+. ...++.++..|+++ ++++..|++++.+++..- .....++
T Consensus 422 d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-- 496 (861)
T 2bpt_A 422 D-QSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-- 496 (861)
T ss_dssp C-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--
T ss_pred C-CcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--
Confidence 5 688999999999999987532210 0111 23467888888776 999999999999998641 2222233
Q ss_pred CCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 191 MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 191 ~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
..+++.|+.++.+. +.+..+|..++.+|..++...+.
T Consensus 497 ~~il~~L~~~l~~~-d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 497 PALVDGLIGAANRI-DNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHHHTCS-CCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHhCc-CcchHHHHHHHHHHHHHHHHcch
Confidence 24678888888864 11378999999999999987753
No 64
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.51 E-value=3.1e-07 Score=91.75 Aligned_cols=179 Identities=13% Similarity=0.205 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH-H-HHHHHHhcCcHHHHHHhh
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP-F-SQNFIIQTDFLNLLLTSI 116 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~-~-~q~~v~~~g~l~~L~~LL 116 (285)
..+..|...|..++.... ..+.. ..++.+...|.++++.+|..|++++|.++.+.+ . ....+ .+++|.|+..+
T Consensus 343 ~~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l 417 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELM 417 (876)
T ss_dssp CHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHh
Confidence 456666666666654322 11111 345666677889999999999999999998753 3 23222 45899999999
Q ss_pred ccCCCHHHHHHHHHHHHHHhhCChHhH--HHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc------------
Q psy355 117 EHDSNTTVQVKSLYAVSCLVRDNEECL--KEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN------------ 182 (285)
Q Consensus 117 ~~~~~~~v~~~a~~ALs~l~r~~~~~~--~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~------------ 182 (285)
.. ++..+|..|+|+|++++...++.. ..++ ...++.|+..|.++ .+++..|+|++.+++....
T Consensus 418 ~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~ 494 (876)
T 1qgr_A 418 KD-PSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEP 494 (876)
T ss_dssp TC-SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCC
T ss_pred CC-CCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 85 678999999999999998765421 1111 24567788888775 9999999999999985411
Q ss_pred ---hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 183 ---QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 183 ---~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
....++ ..+++.|..++......+..++..++.+|..++...+
T Consensus 495 ~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 495 ATYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp CCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred cchhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 122222 2467888888876522245788899999999887664
No 65
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.49 E-value=7e-07 Score=76.30 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=128.2
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355 69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK 148 (285)
Q Consensus 69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~ 148 (285)
.+...+++.+...|..|+..|+.++.+++.....-. ..+++.|..++..+++..++..|+.+++.++.+-.+.+..+.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~- 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA- 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence 477888999999999999999999987443110000 246778888885347899999999999999976444333332
Q ss_pred cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC-h
Q psy355 149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS-T 227 (285)
Q Consensus 149 ~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~-~ 227 (285)
...++.|+..+.++...+|..|+.++..++...+ . ..+++.+...|.+. ++.+|+.++..|..++... |
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~---~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNK---NPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHcCC
Confidence 3467899999999999999999999999987643 1 13678888999988 9999999999999977654 3
Q ss_pred HHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHH
Q psy355 228 EAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTE 270 (285)
Q Consensus 228 ~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~ 270 (285)
... ....+..++......+. +.+.++.+.+...+..
T Consensus 167 ~~~-----~~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~~ 202 (242)
T 2qk2_A 167 TAL-----NKKLLKLLTTSLVKTLN--EPDPTVRDSSAEALGT 202 (242)
T ss_dssp GGC-----CHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHH
T ss_pred CCc-----cHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHH
Confidence 210 01122333333333443 2455566655555544
No 66
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.48 E-value=6e-06 Score=69.99 Aligned_cols=188 Identities=16% Similarity=0.191 Sum_probs=142.6
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
.+..|..+|...++.++.+|+.+|+.+...-|.......=...+|.++.++.+ ++..+..+|+-+|..+..|.|..-+.
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 47788999999999999999999999998644444444445689999999986 78999999999999999998887777
Q ss_pred HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
|. .....+..++++++.-++..|+-.+..+---.+. .+++..+..++.+. |..++..++.+|.+++..
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Sk---d~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSP---DLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCS---SHHHHHHHHHHHHHHGGG
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCC---ChhHHHHHHHHHHHhhcc
Confidence 76 4567888889999999999999999988211211 14667788888888 999999999999999976
Q ss_pred ChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCC
Q psy355 226 STEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDS 276 (285)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~ 276 (285)
+.+ +. .+.....+.-+.++ +++....+++-.+++..++.+=
T Consensus 181 S~D-------~~-i~~~I~~eI~elL~--~eD~~l~e~aLd~Le~ils~pi 221 (265)
T 3b2a_A 181 SAD-------SG-HLTLILDEIPSLLQ--NDNEFIVELALDVLEKALSFPL 221 (265)
T ss_dssp CSS-------CC-CGGGTTTTHHHHHT--CSCHHHHHHHHHHHHHHTTSCC
T ss_pred cCC-------HH-HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCcc
Confidence 631 10 11111222222333 3577788888888888877653
No 67
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.42 E-value=7.5e-06 Score=75.39 Aligned_cols=155 Identities=8% Similarity=0.070 Sum_probs=109.1
Q ss_pred CHHHHHhhhcCC--CHHHHHHHHHHHHHHhhCC-HHHHHHHHhcCcHHHHHHhhccCC-CHHHHHHHHHHHHHHhhCChH
Q psy355 66 GLPVLQPLLEGS--DPELRWRAAETVADIVQNN-PFSQNFIIQTDFLNLLLTSIEHDS-NTTVQVKSLYAVSCLVRDNEE 141 (285)
Q Consensus 66 g~~~Lv~lL~s~--~~~vr~~A~~~lg~~a~nn-~~~q~~v~~~g~l~~L~~LL~~~~-~~~v~~~a~~ALs~l~r~~~~ 141 (285)
.+|.|+.+++++ ++.+|..|+.+++.++... +..-.... ..+++.++.++.++. +..+|..|+.++++++.....
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888 9999999999999999743 22111111 247888999998643 689999999999997653322
Q ss_pred hHH--HHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHH
Q psy355 142 CLK--EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSAL 219 (285)
Q Consensus 142 ~~~--~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL 219 (285)
... .+. .-.++.+...+.+++..+|..+++++..++...+......+..++++.++..+... +..++..++..+
T Consensus 208 ~~~~~~~~-~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~v~~~a~~~l 283 (462)
T 1ibr_B 208 NFDKESER-HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD---IDEVALQGIEFW 283 (462)
T ss_dssp HHTSHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS---SHHHHHHHHHHH
T ss_pred hhhhhHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---chHHHHHHHHHH
Confidence 111 011 11356666777888999999999999999876554322222226777788888777 889999999998
Q ss_pred HHHHhc
Q psy355 220 ASLIKD 225 (285)
Q Consensus 220 ~~l~~~ 225 (285)
..+...
T Consensus 284 ~~~~~~ 289 (462)
T 1ibr_B 284 SNVCDE 289 (462)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888754
No 68
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.41 E-value=1.6e-06 Score=80.03 Aligned_cols=182 Identities=8% Similarity=0.094 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHhhcCcch-HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHH---------------
Q psy355 38 KDICIGALDNLSDYVCSIDY-ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQN--------------- 101 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dn-a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~--------------- 101 (285)
.+.+..++..|..+++.... -..+...+.++.++..+++.++.+|..|++.+++++........
T Consensus 231 ~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (462)
T 1ibr_B 231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT 310 (462)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccch
Confidence 46677777777777653211 00111114567777888899999999999999999864211100
Q ss_pred --HHHh---cCcHHHHHHhhccC------CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHH
Q psy355 102 --FIIQ---TDFLNLLLTSIEHD------SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKS 170 (285)
Q Consensus 102 --~v~~---~g~l~~L~~LL~~~------~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka 170 (285)
.+++ ..++|.+++.+... .+..+|..|+.+|+.++...+. .++ ...++.+...|++++.++|..|
T Consensus 311 ~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aa 386 (462)
T 1ibr_B 311 SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAA 386 (462)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHH
T ss_pred hHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHH
Confidence 0111 23677777777531 2347899999999999886653 222 2456788888999999999999
Q ss_pred HHHHHHHhcCCc-hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 171 CFLIACLCTDNN-QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 171 ~~~l~~L~~~~~-~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+++++.++.+.. ......+ ..+++.++.+|..+ ++.+|..|+.+|..++...+
T Consensus 387 l~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~---~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP---SVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcc
Confidence 999999997643 2211112 46889999999988 99999999999999987654
No 69
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.38 E-value=1.4e-05 Score=77.87 Aligned_cols=186 Identities=10% Similarity=0.016 Sum_probs=140.7
Q ss_pred CHHHHHHHHHHHH----h-ccCCCHHHHHHHHHHHHHhhc-CcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHH
Q psy355 19 NVGAELEKIIKTL----K-ENQDQKDICIGALDNLSDYVC-SIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 92 (285)
Q Consensus 19 d~~~~mk~~l~~l----~-~~~~~~~~~~~al~~L~~lv~-~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~ 92 (285)
++-+.+++-+..+ + ++..+...+..++..+.++.- ..| -..|++.+++++.|++..+|..+.-.+..+
T Consensus 28 ~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d------~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~ 101 (621)
T 2vgl_A 28 AEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD------IDFGHMEAVNLLSSNRYTEKQIGYLFISVL 101 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC------CCSCHHHHHHGGGCSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC------CchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4455555444433 3 222345778888888877642 122 124789999999999999999999999999
Q ss_pred hhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhh--ccCcHHHHHHH
Q psy355 93 VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCI--QSKKEKLVIKS 170 (285)
Q Consensus 93 a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L--~~~~~~v~~ka 170 (285)
+..++..--. ++..+.+=|.+ +++.+|.-|+.+||++. .+.-.+ ..++.+.++| .+.++-||++|
T Consensus 102 ~~~~~e~~~L-----~iN~l~kDl~~-~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A 168 (621)
T 2vgl_A 102 VNSNSELIRL-----INNAIKNDLAS-RNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKILVAGDTMDSVKQSA 168 (621)
T ss_dssp CCCCHHHHHH-----HHHHHHHHHHS-CCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHHHCSSSCHHHHHHH
T ss_pred ccCCcHHHHH-----HHHHHHHhcCC-CCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHHhCCCCCHHHHHHH
Confidence 9988864322 35566666664 78999999999999983 344222 3457888999 78899999999
Q ss_pred HHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355 171 CFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA 229 (285)
Q Consensus 171 ~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~ 229 (285)
+.++..+....|+.... .++++.+..+|..+ |+.++..|+.+|..+...+|..
T Consensus 169 ~~al~kl~~~~p~~~~~---~~~~~~l~~lL~d~---d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 169 ALCLLRLYRTSPDLVPM---GDWTSRVVHLLNDQ---HLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp HHHHHHHHHHCGGGCCC---CSCHHHHHHHTTCS---CHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhChhhcCc---hhHHHHHHHHhCCC---CccHHHHHHHHHHHHHHhChHH
Confidence 99999999887765532 58999999999887 9999999999999999888753
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.38 E-value=0.00038 Score=57.03 Aligned_cols=197 Identities=14% Similarity=0.164 Sum_probs=138.6
Q ss_pred HHHHHHHhc-CCHHHHH----HHHHHHHhccCCCH--HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhc-CCCHH
Q psy355 9 LLDALNSMM-VNVGAEL----EKIIKTLKENQDQK--DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE-GSDPE 80 (285)
Q Consensus 9 L~~al~~~~-~d~~~~m----k~~l~~l~~~~~~~--~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~-s~~~~ 80 (285)
+++||+... .+++-.| ++.++.+-..-++| -....|+..+..+.+.......- .+..|+-+++ |+.-.
T Consensus 10 ~realatge~~~eii~~a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep----l~~kL~vm~~ksEaIp 85 (253)
T 2db0_A 10 IREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP----MLKKLFSLLKKSEAIP 85 (253)
T ss_dssp HHHHHHTTCSHHHHHHHHHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH----HHHHHHHHHHHCCSHH
T ss_pred HHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH----HHHHHHHHHhhcccCc
Confidence 677887764 3333222 12233222222333 36778888888888775432221 1334444443 67777
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc
Q psy355 81 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ 160 (285)
Q Consensus 81 vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~ 160 (285)
+-..-++++|.++.-+|..- .+.+|.+..-..- .++.+|..-.|+|..|.|.||.....+ +.-+..++.
T Consensus 86 ltqeIa~a~G~la~i~Pe~v-----~~vVp~lfanyri-gd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smlt 154 (253)
T 2db0_A 86 LTQEIAKAFGQMAKEKPELV-----KSMIPVLFANYRI-GDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLS 154 (253)
T ss_dssp HHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHSCC-CSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTS
T ss_pred hHHHHHHHHhHHHHhCHHHH-----HhhHHHHHHHHhc-CCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhc
Confidence 87788999999999999743 3468888877776 589999999999999999999865433 456677888
Q ss_pred cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 161 SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 161 ~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
+++..=|..|..+|+.+-.+++ +++. -++|.|..||... |.-+|..+..+|.+++..+|.
T Consensus 155 skd~~Dkl~aLnFi~alGen~~---~yv~--PfLprL~aLL~D~---deiVRaSaVEtL~~lA~~npk 214 (253)
T 2db0_A 155 SKNREDKLTALNFIEAMGENSF---KYVN--PFLPRIINLLHDG---DEIVRASAVEALVHLATLNDK 214 (253)
T ss_dssp CSSHHHHHHHHHHHHTCCTTTH---HHHG--GGHHHHHGGGGCS---SHHHHHHHHHHHHHHHTSCHH
T ss_pred CCChHHHHHHHHHHHHHhccCc---cccC--cchHHHHHHHcCc---chhhhHHHHHHHHHHHHcCHH
Confidence 8887777777777776644443 4443 5899999999998 999999999999999999985
No 71
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.27 E-value=0.00011 Score=73.31 Aligned_cols=197 Identities=9% Similarity=0.108 Sum_probs=126.9
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhhcCcchH-H-HHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy355 27 IIKTLKENQDQKDICIGALDNLSDYVCSIDYA-N-DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII 104 (285)
Q Consensus 27 ~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna-~-~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~ 104 (285)
.+..+.+++.+.+.+..|+..|..++...... . .......++.+..++.++++++|..|+.+++.++...+..-...+
T Consensus 177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 256 (876)
T 1qgr_A 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM 256 (876)
T ss_dssp HHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33344444324567888888888877543211 0 000011366677788889999999999999999976654222223
Q ss_pred hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh---------------------H----hHHHHH------------
Q psy355 105 QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE---------------------E----CLKEFI------------ 147 (285)
Q Consensus 105 ~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~---------------------~----~~~~f~------------ 147 (285)
...+++.++..+.+ .++.++..|+..++.+++... . ....++
T Consensus 257 ~~~l~~~~~~~~~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~ 335 (876)
T 1qgr_A 257 GPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE 335 (876)
T ss_dssp TTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccc
Confidence 33567777776654 456777777777766654210 0 000000
Q ss_pred ---------------------h-------cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc-hHHHHHHHCCcHHHHH
Q psy355 148 ---------------------K-------RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN-QVKQVLLSMGMVEQMC 198 (285)
Q Consensus 148 ---------------------~-------~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~-~~~~~l~~~g~v~~L~ 198 (285)
. ...++.+...+.+++.++|..|+++++.++.+.. ......+ .++++.++
T Consensus 336 d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~ 414 (876)
T 1qgr_A 336 NDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLI 414 (876)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHH
Confidence 0 0123444556677889999999999999987643 3333333 34889999
Q ss_pred HhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 199 VLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 199 ~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
..|..+ ++.+|..++.+|.+++...+.
T Consensus 415 ~~l~d~---~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 415 ELMKDP---SVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp HHHTCS---SHHHHHHHHHHHHHHHHHCGG
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHhCch
Confidence 999888 899999999999999987653
No 72
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=98.23 E-value=8.8e-06 Score=71.49 Aligned_cols=213 Identities=15% Similarity=0.144 Sum_probs=138.7
Q ss_pred HHHHHHHHHhcc-C--CC-HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh--hhcCCCHHHHHHHHHHHHHHhhCC
Q psy355 23 ELEKIIKTLKEN-Q--DQ-KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP--LLEGSDPELRWRAAETVADIVQNN 96 (285)
Q Consensus 23 ~mk~~l~~l~~~-~--~~-~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~--lL~s~~~~vr~~A~~~lg~~a~nn 96 (285)
...++.+.+.++ . .+ .+....||+.|.++.+++...-.+.... +..|-. |..+.++.++..|+++||.+.+||
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNN 101 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNN 101 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccC
Confidence 445566666664 1 22 3578899999999999999888877643 555544 345678899999999999999999
Q ss_pred HHHHHHHHhc--CcHHH----HHHhhcc--CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHH
Q psy355 97 PFSQNFIIQT--DFLNL----LLTSIEH--DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKL 166 (285)
Q Consensus 97 ~~~q~~v~~~--g~l~~----L~~LL~~--~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v 166 (285)
|.+-..|.+. ..+.. |..++.. .....+.+.-+++|..++... ..| ...|+..|.+++... +..+
T Consensus 102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~ 176 (315)
T 3qml_C 102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQL 176 (315)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHH
Confidence 9998888764 23332 3333321 134578888889999998865 224 366889999988877 9999
Q ss_pred HHHHHHHHHHHhcC---Cc------hHHHHHH-----HCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhh
Q psy355 167 VIKSCFLIACLCTD---NN------QVKQVLL-----SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSL 232 (285)
Q Consensus 167 ~~ka~~~l~~L~~~---~~------~~~~~l~-----~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~ 232 (285)
|.|+.-++..+... .. ..++.+- .+++...+-.++... ..|.......-..|.+|-+..+..
T Consensus 177 k~Kvl~li~d~f~~~~~~~~~~~~~~~kR~~e~~~~~~q~w~~~~q~~iq~k-~~dE~~~r~fF~~L~~ik~~~~~~--- 252 (315)
T 3qml_C 177 QIKVLELISKILKADMYENDDTNLILFKRNAENWSSNLQEWANEFQEMVQNK-SIDELHTRTFFDTLYNLKKIFKSD--- 252 (315)
T ss_dssp HHHHHHHHHHHHHHHTTC-------------------CHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHHGGG---
T ss_pred HHHHHHHHHHHcccccccccccccchhhhcccccCchHHHHHHHHHHHHhcc-ccCHHHHHHHHHHHHHHHHhcccc---
Confidence 99999999988731 10 1111111 112555566666654 223334455567777776555322
Q ss_pred cccCcccHHHHHHH
Q psy355 233 CRLEPLNLKFKLNF 246 (285)
Q Consensus 233 ~~~~~~~l~~~l~~ 246 (285)
..+.-.|..||.+
T Consensus 253 -lK~~~~FLnWLa~ 265 (315)
T 3qml_C 253 -ITINKGFLNWLAQ 265 (315)
T ss_dssp -SCCCHHHHHHHHH
T ss_pred -cCCCHHHHHHHHH
Confidence 3444578888874
No 73
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.22 E-value=2.4e-05 Score=81.66 Aligned_cols=189 Identities=11% Similarity=0.115 Sum_probs=137.2
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
++.|++.+.+.+..+|..++.++|.++...+ ...+|.|.+.+.+ .++.+|..++.++..++.+.++.....
T Consensus 933 ~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~--------~~l~p~l~~~l~~-~~~~~R~~~~~~l~~~~~~~~~~~~~~ 1003 (1230)
T 1u6g_C 933 WALLLKHCECAEEGTRNVVAECLGKLTLIDP--------ETLLPRLKGYLIS-GSSYARSSVVTAVKFTISDHPQPIDPL 1003 (1230)
T ss_dssp HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG--------GGTHHHHTTTSSS-SCHHHHHHHHHHTGGGCCSSCCTHHHH
T ss_pred HHHHHHHhcCcchhhHHHHHHHHhhhhccCh--------HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHccCchhhHHH
Confidence 4555556666788899999999999998876 4588989888885 568899999999998887766544333
Q ss_pred HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCC---------------CCCccH
Q psy355 147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIED---------------ALDTEM 211 (285)
Q Consensus 147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~---------------~~d~~~ 211 (285)
+. .-++.++..|++++..+|+.|+.++..++...|+.....+. .+++.|...+...+ ....++
T Consensus 1004 l~-~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~-~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~ 1081 (1230)
T 1u6g_C 1004 LK-NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLD-TVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDI 1081 (1230)
T ss_dssp HH-HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHH
T ss_pred HH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHH-HHHHHHHHHhcccHHhheeeccCCcccccCCcHHH
Confidence 31 22456677889999999999999999999887766544443 37777776654330 012379
Q ss_pred HHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCCc
Q psy355 212 NEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSL 277 (285)
Q Consensus 212 ~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~~ 277 (285)
|+.|..++..|+..+.. ...+.+++.+-+..+..+ .|+.-+|+.++.++......
T Consensus 1082 rk~a~~~~~~ll~~~~~--------~i~~~~~~~~~~~gl~d~---~di~~~~~~~l~~l~~~~~~ 1136 (1230)
T 1u6g_C 1082 RKAAFECMYTLLDSCLD--------RLDIFEFLNHVEDGLKDH---YDIKMLTFLMLVRLSTLCPS 1136 (1230)
T ss_dssp HHHHHHHHHHHHHSSCS--------SSCHHHHHHHHHHTTSSC---HHHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHcccCch---HHHHHHHHHHHHHHHhcCHH
Confidence 99999999999987643 234566777766677642 56777888888887665443
No 74
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.19 E-value=3.5e-06 Score=83.96 Aligned_cols=196 Identities=13% Similarity=0.191 Sum_probs=128.9
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchH-HHHHHcCCHHHHHhhhcC---------------CCHHHHHHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYA-NDFLKMGGLPVLQPLLEG---------------SDPELRWRAAE 87 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna-~~~~~~Gg~~~Lv~lL~s---------------~~~~vr~~A~~ 87 (285)
|...+..+...+.+...+..++..+..++...... ..+.. ..+|.++..|.. ..+.+|..++.
T Consensus 500 l~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 578 (861)
T 2bpt_A 500 VDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT 578 (861)
T ss_dssp HHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHH
Confidence 33444444433322355667777777776543221 11111 245666666542 24578999999
Q ss_pred HHHHHhhCCHH-HHHHHHhcCcHHHHHHhhccCCCH-HHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHH
Q psy355 88 TVADIVQNNPF-SQNFIIQTDFLNLLLTSIEHDSNT-TVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEK 165 (285)
Q Consensus 88 ~lg~~a~nn~~-~q~~v~~~g~l~~L~~LL~~~~~~-~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~ 165 (285)
+|++++..-+. +...+ ...++.++.+++. .+. .+|..+++++++++.........++ ...++.|...+.+++..
T Consensus 579 ~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~ 654 (861)
T 2bpt_A 579 VLAAVIRKSPSSVEPVA--DMLMGLFFRLLEK-KDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSP 654 (861)
T ss_dssp HHHHHHHHCGGGTGGGH--HHHHHHHHHHHHS-TTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHhhhhhHHHH--HHHHHHHHHHHcc-CCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHH
Confidence 99999976543 11111 2477888888886 334 7999999999999876544443343 23678888889878889
Q ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 166 LVIKSCFLIACLCTDNN-QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 166 v~~ka~~~l~~L~~~~~-~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
++..|+.+++.++..-. ....++ ..+++.+...|.++ +.+.++++.++.++..++...+
T Consensus 655 vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~-~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 655 VSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNP-NARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCc-cccHhhhHHHHHHHHHHHHHhh
Confidence 99999999999987533 333333 35677888888765 1248899999999999987654
No 75
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.15 E-value=1.8e-05 Score=82.50 Aligned_cols=190 Identities=11% Similarity=0.111 Sum_probs=129.9
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchH-HHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH
Q psy355 25 EKIIKTLKENQDQKDICIGALDNLSDYVCSIDYA-NDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 103 (285)
Q Consensus 25 k~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna-~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v 103 (285)
...++.+.++ +.+.+..|+..|...+...-.. ..-.....++.|+..|.++++.+|..|+.+|++++...+. ..+
T Consensus 9 ~~lL~~l~s~--d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~ 84 (1230)
T 1u6g_C 9 SNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV 84 (1230)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH
T ss_pred HHHHHhcCCC--CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH
Confidence 3444444433 2467888888888765431000 0000112467888999999999999999999999986554 111
Q ss_pred HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh------HHHHHhcCcHHHHHHhhc-cCcHHHHHHHHHHHHH
Q psy355 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC------LKEFIKRDGFSVLLRCIQ-SKKEKLVIKSCFLIAC 176 (285)
Q Consensus 104 ~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~------~~~f~~~~gi~~L~~~L~-~~~~~v~~ka~~~l~~ 176 (285)
..+++.|+..+.+ +++.+|..|+.+|+.++....+. ...+ -...+|.|...+. +++.+++..|+.+++.
T Consensus 85 --~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 85 --ETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp --HHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 2367888888875 45689999999999998765432 1112 2346789999998 5789999999999999
Q ss_pred HhcCCc-hHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 177 LCTDNN-QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 177 L~~~~~-~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
++...+ ....++ ..+++.|...|.++ ++.+|..++.+|..++...+
T Consensus 161 ~~~~~~~~l~~~~--~~ll~~l~~~L~~~---~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 161 MLSRQGGLLVNFH--PSILTCLLPQLTSP---RLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHTCSSCTTTH--HHHHHHHGGGGGCS---SHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHhHhHHHHHH--HHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhcC
Confidence 985321 111111 24667788888877 88899999999998887654
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.01 E-value=7.6e-06 Score=70.68 Aligned_cols=187 Identities=11% Similarity=0.091 Sum_probs=126.6
Q ss_pred HHhhhcCCCHHHHHHHHHHHHH-HhhCCHHHHHHHHh-cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh-HhHH-H
Q psy355 70 LQPLLEGSDPELRWRAAETVAD-IVQNNPFSQNFIIQ-TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE-ECLK-E 145 (285)
Q Consensus 70 Lv~lL~s~~~~vr~~A~~~lg~-~a~nn~~~q~~v~~-~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~-~~~~-~ 145 (285)
+...++|++..-|..|+..|+. ++.+++.......+ ...+..|.+.+..+++..++..|+.+|+.++.+-. +.+. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4556789999999999999999 88765542200001 13577788888556889999999999999997654 3333 3
Q ss_pred HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHH--HHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV--LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~--l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
+. .-.++.++..++.....++..+..++..++..-+..... + ..+++.|...|.+. ++.+++.++.+|..++
T Consensus 101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l--~~ll~~l~~~l~~k---~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRN--EDMLKDILEHMKHK---TPQIRMECTQLFNASM 174 (249)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT--HHHHHHHHHHTTCS---SHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcH--HHHHHHHHHHHcCC---ChHHHHHHHHHHHHHH
Confidence 33 235789999999888999999999998888643111000 1 12667888999988 8999999999999999
Q ss_pred hcChH---HHhhcccCcccH-HHHHHHHHHHccChHhhHHHHHHHHHHHHH
Q psy355 224 KDSTE---AQSLCRLEPLNL-KFKLNFIKEKHAGNEVYHKELEHVNSVLTE 270 (285)
Q Consensus 224 ~~~~~---~~~~~~~~~~~l-~~~l~~~~~~l~~~~e~~~~~~~~~~il~~ 270 (285)
...+. .+.. .+ ..++....+-+. +.+.+..+.+..++..
T Consensus 175 ~~~~~~~~~l~~------~l~~~iip~l~~~l~--D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 175 KEEKDGYSTLQR------YLKDEVVPIVIQIVN--DTQPAIRTIGFESFAI 217 (249)
T ss_dssp HHCCSCSHHHHH------HHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHH
T ss_pred HHcCCcchhHHH------HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Confidence 77652 2211 11 122332222332 3566677766666654
No 77
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.95 E-value=0.00039 Score=67.66 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=87.9
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh--ccCCCHHHHHHHHHHHHHHhhCChHhHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI--EHDSNTTVQVKSLYAVSCLVRDNEECLK 144 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL--~~~~~~~v~~~a~~ALs~l~r~~~~~~~ 144 (285)
+..+.+-|+++++-+|..|+++||++. +|..-+ ..+|.+.++| . +.++-||++|+.|+..+.+.+|....
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l~~~-d~~~~VRK~A~~al~kl~~~~p~~~~ 184 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKILVAG-DTMDSVKQSAALCLLRLYRTSPDLVP 184 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHHHCS-SSCHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhChhhcC
Confidence 567777888999999999999999996 455333 3678888998 5 47899999999999999997775432
Q ss_pred HHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCch
Q psy355 145 EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ 183 (285)
Q Consensus 145 ~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~ 183 (285)
..+.++.+.++|.++++.++..|+.++..++..+|.
T Consensus 185 ---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 185 ---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp ---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred ---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 246789999999988999999999999999987764
No 78
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.93 E-value=0.00049 Score=61.42 Aligned_cols=157 Identities=12% Similarity=0.086 Sum_probs=122.3
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355 69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK 148 (285)
Q Consensus 69 ~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~ 148 (285)
.++.-|.+++...+..|+.-|..+.+..+.....|++.||+..|++.... .+...+..++.|+.++.- +......++.
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs 199 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLML-FVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTT-SHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHh-ccccccchhC
Confidence 44555567778889999999999777777778889999999999999986 578999999999999865 6667777774
Q ss_pred -cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH--------CC--cHHHHHHhcccCCCCCccHHHHHHH
Q psy355 149 -RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS--------MG--MVEQMCVLIDIEDALDTEMNEHLLS 217 (285)
Q Consensus 149 -~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~--------~g--~v~~L~~lL~~~~~~d~~~~e~al~ 217 (285)
...+..+..++.+.+..+.+.|.-++-.++...+.....+.+ .| ....|+.+|...+..|.+++.+++.
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 347788889999888999999999999988766533332221 22 3668899997322239999999999
Q ss_pred HHHHHHhcCh
Q psy355 218 ALASLIKDST 227 (285)
Q Consensus 218 aL~~l~~~~~ 227 (285)
.+-.++...|
T Consensus 280 LIN~lL~~ap 289 (339)
T 3dad_A 280 LINKTLAALP 289 (339)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHhcCC
Confidence 8888888776
No 79
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.90 E-value=0.00051 Score=62.25 Aligned_cols=187 Identities=13% Similarity=0.104 Sum_probs=132.7
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcc-hHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC
Q psy355 18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSID-YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN 96 (285)
Q Consensus 18 ~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~d-na~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn 96 (285)
.|....+++ ...++++..+..-...++..+.++.-.-+ .....+ ...++.+++++.|++..+|.-.--.+.+++...
T Consensus 22 ~~k~~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~-t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~ 99 (355)
T 3tjz_B 22 LEKSAVLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEA-TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA 99 (355)
T ss_dssp CCHHHHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS
T ss_pred chHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH
Confidence 456667777 35666665544444557777777653322 111111 134667788999999999999999998888652
Q ss_pred HHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHH
Q psy355 97 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC 176 (285)
Q Consensus 97 ~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~ 176 (285)
+ +.+ =++..|.+=+.+ +++-+|..|+.++++|.-. .-.+ ...+.+.++|.+.++-||++|+.++.+
T Consensus 100 ~---e~i---Lv~Nsl~kDl~~-~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~k 165 (355)
T 3tjz_B 100 E---DVI---IVTSSLTKDMTG-KEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLH 165 (355)
T ss_dssp S---CGG---GGHHHHHHHHHS-SCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred H---HHH---HHHHHHHhhcCC-CcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 2 222 255666666775 6789999999999998543 2222 234678888999999999999999999
Q ss_pred HhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChH
Q psy355 177 LCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228 (285)
Q Consensus 177 L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~ 228 (285)
|....|+..+ ++++.+-.++... ++-++-+|+.+|..+...++.
T Consensus 166 L~~~~pe~v~-----~~~~~l~~ll~d~---n~~V~~~Al~lL~ei~~~d~~ 209 (355)
T 3tjz_B 166 LLKCSFDVVK-----RWVNEAQEAASSD---NIMVQYHALGLLYHVRKNDRL 209 (355)
T ss_dssp HTTTCHHHHH-----TTHHHHHHHTTCS---SHHHHHHHHHHHHHHHTTCHH
T ss_pred HhccCHHHHH-----HHHHHHHHHhcCC---CccHHHHHHHHHHHHHhhchH
Confidence 9888887542 6888999999887 888888999999888876653
No 80
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.76 E-value=0.00064 Score=68.64 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=102.4
Q ss_pred CHHHHHhhhc-CCCHHHHHHHHHHHHHHh--hCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh
Q psy355 66 GLPVLQPLLE-GSDPELRWRAAETVADIV--QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC 142 (285)
Q Consensus 66 g~~~Lv~lL~-s~~~~vr~~A~~~lg~~a--~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~ 142 (285)
.++.+++.|. +.+|-+|..|+.++|-.. ++|+. ++..|+..+.++.+..+|..|+.+|+-+.-+.+..
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~---------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS---------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH---------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH
Confidence 5778888655 688999999888887543 44543 46667777666677899999999999988777633
Q ss_pred HHHHHhcCcHHHHHH-hhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHH
Q psy355 143 LKEFIKRDGFSVLLR-CIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221 (285)
Q Consensus 143 ~~~f~~~~gi~~L~~-~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~ 221 (285)
++.++. ++++.++.+|.-|+++++-++.+++.. .++..|..++..+ +..++..|+.+|..
T Consensus 613 ---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~---d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 613 ---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDP---VDFVRQAAMIALSM 673 (963)
T ss_dssp ---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS---SHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCC---CHHHHHHHHHHHHH
Confidence 333444 455679999999999999998887632 2566777777777 99999999999999
Q ss_pred HHhcChH
Q psy355 222 LIKDSTE 228 (285)
Q Consensus 222 l~~~~~~ 228 (285)
+..+..+
T Consensus 674 Ig~gtnn 680 (963)
T 4ady_A 674 ILIQQTE 680 (963)
T ss_dssp HSTTCCT
T ss_pred HhcCCcc
Confidence 9877643
No 81
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.63 E-value=0.0015 Score=56.66 Aligned_cols=170 Identities=14% Similarity=0.151 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh----hcCCCHHHHHHHHHHHHHHhhC----CHHHHHHHHhcCcH
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL----LEGSDPELRWRAAETVADIVQN----NPFSQNFIIQTDFL 109 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l----L~s~~~~vr~~A~~~lg~~a~n----n~~~q~~v~~~g~l 109 (285)
-..+..|++.|...+++. ...+. .-+..+++. +.++++.|...++.+|..+.+- +......-. .-.+
T Consensus 60 ~k~~~~ale~L~~~l~~~--~~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~l 134 (266)
T 2of3_A 60 FKQHLAALDSLVRLADTS--PRSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFV 134 (266)
T ss_dssp HHHHHHHHHHHHHHHHHC--HHHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHhhhC--hHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHH
Confidence 477888999998877642 22211 123333332 2367999999999999887531 111111100 1268
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHH
Q psy355 110 NLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVL 188 (285)
Q Consensus 110 ~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l 188 (285)
|.|+.-+-. +.+.+|..+-..+-.+..-+|+. ..++.+...+++.+.++|..++..+.++... +..
T Consensus 135 P~LveKlGd-~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----- 201 (266)
T 2of3_A 135 PYLLLKTGE-AKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----- 201 (266)
T ss_dssp HHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----
T ss_pred HHHHHHhCC-ChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----
Confidence 999988875 56789888777665554433332 1345678899999999999999999999764 322
Q ss_pred HHCCcH---HHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355 189 LSMGMV---EQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA 229 (285)
Q Consensus 189 ~~~g~v---~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~ 229 (285)
....+ +.++.++..+ |..+|..|+.++..+-....+.
T Consensus 202 -~~~~l~~~~~ia~ll~D~---d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 202 -PLKSLSVEKTVAPFVGDK---DVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp -GGGGGCHHHHHGGGGGCS---SHHHHHHHHHHHHHHHHHHTTH
T ss_pred -ccccccchHHHHHHHcCC---CHHHHHHHHHHHHHHHHHhhHH
Confidence 13467 9999999998 9999999999998777655433
No 82
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.59 E-value=0.00028 Score=63.94 Aligned_cols=153 Identities=14% Similarity=0.197 Sum_probs=82.9
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355 68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFI 147 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~ 147 (285)
+.+.++|.+.+|-||..|+.+...+...+|..- .++++.+-.++.. .++.|...|+.++..+.++.+.+...++
T Consensus 142 ~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d-~n~~V~~~Al~lL~ei~~~d~~a~~kLv 215 (355)
T 3tjz_B 142 RYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASS-DNIMVQYHALGLLYHVRKNDRLAVSKMI 215 (355)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcC-CCccHHHHHHHHHHHHHhhchHHHHHHH
Confidence 345556667777777777777777777777632 2578888888874 6778888888888887765543322222
Q ss_pred h---cCc-----------------------------HHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHH
Q psy355 148 K---RDG-----------------------------FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 195 (285)
Q Consensus 148 ~---~~g-----------------------------i~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~ 195 (285)
. .+| ++.|...|++.+.-|.-+|+.+|.++....+. .. ..++.
T Consensus 216 ~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~ 290 (355)
T 3tjz_B 216 SKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVS 290 (355)
T ss_dssp HHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----------------CCC
T ss_pred HHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHH
Confidence 1 111 12333344455566777777777666432211 11 23455
Q ss_pred HHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcc
Q psy355 196 QMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCR 234 (285)
Q Consensus 196 ~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~ 234 (285)
.|..+|.++ ++.+|=.|++.|..++...|..+..|+
T Consensus 291 ~L~~fLss~---d~niryvaLr~L~~l~~~~P~~v~~~n 326 (355)
T 3tjz_B 291 VLQLFCSSP---KAALRYAAVRTLNKVAMKHPSAVTACN 326 (355)
T ss_dssp THHHHHHSS---SSSSHHHHHHCC---------------
T ss_pred HHHHHHcCC---CchHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 666778888 899999999999999999998888774
No 83
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0019 Score=56.07 Aligned_cols=177 Identities=12% Similarity=0.155 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhhcCcch--H--HHHHHcCCHHHH-HhhhcCCCHHHHHHHHHHHHHHhhCCHH-----HHHHHHhcCc
Q psy355 39 DICIGALDNLSDYVCSIDY--A--NDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPF-----SQNFIIQTDF 108 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dn--a--~~~~~~Gg~~~L-v~lL~s~~~~vr~~A~~~lg~~a~nn~~-----~q~~v~~~g~ 108 (285)
..|..|+++|..++..... . ..+...+.+..+ -+.+...+..++..|+.++..++..-.. ......-..+
T Consensus 24 K~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~ 103 (278)
T 4ffb_C 24 KARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTW 103 (278)
T ss_dssp HHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHH
Confidence 6889999999988765321 1 123334555444 4588889999999999999998864211 1111122457
Q ss_pred HHHHHH-hhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchH--
Q psy355 109 LNLLLT-SIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQV-- 184 (285)
Q Consensus 109 l~~L~~-LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~-- 184 (285)
+|.|+. .|.+ +...++..|..++..++....+.. . .++.+...+++.+++++..++..|..++.. ++..
T Consensus 104 l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~~~~~~-~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~ 176 (278)
T 4ffb_C 104 TPLLVEKGLTS-SRATTKTQSMSCILSLCGLDTSIT-Q-----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVN 176 (278)
T ss_dssp HHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTSSSSH-H-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhcCcHH-H-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 788875 4654 568899999988888765432221 1 135667788899999999999999888754 2111
Q ss_pred HHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 185 KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 185 ~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
....+ ..+++.+..+|.+. ++.+|+.|..++..+...-
T Consensus 177 ~k~~l-~~i~~~l~k~l~d~---~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 177 VQTFL-PELLKHVPQLAGHG---DRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHH-HHHGGGHHHHHTCS---SHHHHHHHHHHHHHHHTC-
T ss_pred chhHH-HHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHh
Confidence 11111 13456677888888 9999999999998887654
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.49 E-value=0.0028 Score=51.90 Aligned_cols=200 Identities=12% Similarity=0.172 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh---hcCcch----HHHHHH---------cCCH
Q psy355 5 NRGFLLDALNSMMVNVGAELEKIIKTLKENQDQ-KDICIGALDNLSDY---VCSIDY----ANDFLK---------MGGL 67 (285)
Q Consensus 5 ~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~-~~~~~~al~~L~~l---v~~~dn----a~~~~~---------~Gg~ 67 (285)
+++||.+.+..+--|-+..-|.++.++.....+ ++-...++..|.-+ .+.|+- |..|-. -+.+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vV 109 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI 109 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhH
Confidence 678999999999666678888898888776654 34455555555444 233433 111110 1234
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHH
Q psy355 68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFI 147 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~ 147 (285)
|.+..=..-+++.+|..-..+|+.++.+||..-- +++.-+..++.+ ++..=|-.|+.-|+.+.-+++.- +
T Consensus 110 p~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smlts-kd~~Dkl~aLnFi~alGen~~~y---v- 179 (253)
T 2db0_A 110 PVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSS-KNREDKLTALNFIEAMGENSFKY---V- 179 (253)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSC-SSHHHHHHHHHHHHTCCTTTHHH---H-
T ss_pred HHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcC-CChHHHHHHHHHHHHHhccCccc---c-
Confidence 5555555678999999999999999999998654 356668889985 77777888888888886654432 2
Q ss_pred hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355 148 KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 148 ~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~ 224 (285)
..-+|.|..+|.+++.-+|..|.-++.+++.-+|..+..+. .-+.-++.. +..+...+-.+|..|+-
T Consensus 180 -~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~---S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 180 -NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT---SSLVNKTVKEGISRLLL 246 (253)
T ss_dssp -GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS---CHHHHHHHHHHHHHHHH
T ss_pred -CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc---HHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999998765443 233444555 67788888888877763
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.40 E-value=0.0051 Score=62.14 Aligned_cols=100 Identities=9% Similarity=0.105 Sum_probs=80.5
Q ss_pred HHHHHh-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHH
Q psy355 67 LPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145 (285)
Q Consensus 67 ~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~ 145 (285)
+..|+. +..+++..||..|+..||-++-+++ ..+|.++.+|.++.++.+|..|++||+.++.|++.. .
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--~ 647 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--S 647 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--H
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--H
Confidence 444444 3456788999999999999987775 368888888877788999999999999999988742 2
Q ss_pred HHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355 146 FIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN 182 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~ 182 (285)
.+..|..++++++..|++.|+++++-+..+++
T Consensus 648 -----aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 648 -----AIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp -----HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred -----HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 24477788888899999999999999887644
No 86
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=97.28 E-value=0.02 Score=52.22 Aligned_cols=161 Identities=17% Similarity=0.259 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhh--cCcchHHHHHHcCCHHHHHhhhc-----------CCCHHHHHHHHHHHHHHhhCCHHHHHHHHh
Q psy355 39 DICIGALDNLSDYV--CSIDYANDFLKMGGLPVLQPLLE-----------GSDPELRWRAAETVADIVQNNPFSQNFIIQ 105 (285)
Q Consensus 39 ~~~~~al~~L~~lv--~~~dna~~~~~~Gg~~~Lv~lL~-----------s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~ 105 (285)
+.....|..|.-.+ ..+++...|+ .+|+..|+..|. ..+..++..++++|..+. |+..--+.+++
T Consensus 82 ~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~ 159 (383)
T 3eg5_B 82 MHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLE 159 (383)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHc
Confidence 33344566666543 4578889998 899999999875 224578899999999888 66665566655
Q ss_pred -cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh------HhHHHH------HhcCcHHHHHHhhcc-CcHHHHHHHH
Q psy355 106 -TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE------ECLKEF------IKRDGFSVLLRCIQS-KKEKLVIKSC 171 (285)
Q Consensus 106 -~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~------~~~~~f------~~~~gi~~L~~~L~~-~~~~v~~ka~ 171 (285)
.+++..|...|.+ +.+.+++.|+--|+.+|.-.. ...+++ -+..-+..++..|.+ .+..++..+.
T Consensus 160 ~~~~i~~l~~~L~s-~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m 238 (383)
T 3eg5_B 160 TEEGILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCL 238 (383)
T ss_dssp CSSHHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHH
T ss_pred ChHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHH
Confidence 4688999999986 678999999999988876432 222222 123457889999987 5789999999
Q ss_pred HHHHHHhcCCc------hHHHHHHHCCcHHHHHHhccc
Q psy355 172 FLIACLCTDNN------QVKQVLLSMGMVEQMCVLIDI 203 (285)
Q Consensus 172 ~~l~~L~~~~~------~~~~~l~~~g~v~~L~~lL~~ 203 (285)
.+|-.++.+.+ ..+..+...|+.+.+-. |+.
T Consensus 239 ~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 239 QLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence 99999988865 45677788888887766 444
No 87
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.16 E-value=0.0011 Score=68.11 Aligned_cols=140 Identities=11% Similarity=0.061 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc----CCCHHHHHHHHHHHHHHhhC---ChHhHHHHHhc
Q psy355 77 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH----DSNTTVQVKSLYAVSCLVRD---NEECLKEFIKR 149 (285)
Q Consensus 77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~----~~~~~v~~~a~~ALs~l~r~---~~~~~~~f~~~ 149 (285)
++-..+..|++++|.++.+-..-+..-.=..++|.|+.++.+ +....++..++|.||..++= ++. ++ .
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~----~L-~ 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN----FL-R 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH----HH-H
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH----HH-H
Confidence 678999999999999997643222222223478889998864 12234556788999987652 332 22 2
Q ss_pred CcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH------CCcHHHHHH----hcccCCCCCccHHHHHHHHH
Q psy355 150 DGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS------MGMVEQMCV----LIDIEDALDTEMNEHLLSAL 219 (285)
Q Consensus 150 ~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~------~g~v~~L~~----lL~~~~~~d~~~~e~al~aL 219 (285)
..+..|++.|..++++++..||+++.+||.. .+..++. ...++.++. .+..- +..-+..+..++
T Consensus 540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l---~~~~~~~lyeai 613 (1023)
T 4hat_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADL---QPQQVHTFYKAC 613 (1023)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence 3456677788777899999999999999974 2233332 123444433 33323 566677888888
Q ss_pred HHHHhcCh
Q psy355 220 ASLIKDST 227 (285)
Q Consensus 220 ~~l~~~~~ 227 (285)
..+++..|
T Consensus 614 ~~vi~~~~ 621 (1023)
T 4hat_C 614 GIIISEER 621 (1023)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 88888765
No 88
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=97.10 E-value=0.0086 Score=50.85 Aligned_cols=155 Identities=19% Similarity=0.305 Sum_probs=106.2
Q ss_pred HHHHHHHHhh--cCcchHHHHHHcCCHHHHHhhhcC----C-------CHHHHHHHHHHHHHHhhCCHHHHHHHHh-cCc
Q psy355 43 GALDNLSDYV--CSIDYANDFLKMGGLPVLQPLLEG----S-------DPELRWRAAETVADIVQNNPFSQNFIIQ-TDF 108 (285)
Q Consensus 43 ~al~~L~~lv--~~~dna~~~~~~Gg~~~Lv~lL~s----~-------~~~vr~~A~~~lg~~a~nn~~~q~~v~~-~g~ 108 (285)
.-+..|.-.. ..+++...| ..||+..|+.+|.. + +...+..++.+|..+. |+..--+.++. .++
T Consensus 20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~ 97 (233)
T 2f31_A 20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEG 97 (233)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSH
T ss_pred HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHH
Confidence 3444444432 457889999 57999999887762 1 4577889999999888 56655555655 468
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHhhCC------hHhHHHHH------hcCcHHHHHHhhcc-CcHHHHHHHHHHHH
Q psy355 109 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN------EECLKEFI------KRDGFSVLLRCIQS-KKEKLVIKSCFLIA 175 (285)
Q Consensus 109 l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~------~~~~~~f~------~~~gi~~L~~~L~~-~~~~v~~ka~~~l~ 175 (285)
+..|...|.+ +++.+|+.++--|+.+|.-. ....+++- +..-+..+++.|.+ ++...+..+..+|-
T Consensus 98 i~~l~~~L~s-~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN 176 (233)
T 2f31_A 98 ILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN 176 (233)
T ss_dssp HHHHHTTCCT-TSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 8999999985 67899999887777766532 22222221 22356778888874 46888888888888
Q ss_pred HHhcCCc------hHHHHHHHCCcHHHHHHh
Q psy355 176 CLCTDNN------QVKQVLLSMGMVEQMCVL 200 (285)
Q Consensus 176 ~L~~~~~------~~~~~l~~~g~v~~L~~l 200 (285)
.++.+.+ +.+..+...|+.+.+-.+
T Consensus 177 ~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l 207 (233)
T 2f31_A 177 ALITPAEELDFRVHIRSELMRLGLHQVLQEL 207 (233)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 8888754 345666677776666544
No 89
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=97.03 E-value=0.081 Score=48.28 Aligned_cols=160 Identities=19% Similarity=0.289 Sum_probs=112.1
Q ss_pred HHHHHHHHHh--hcCcchHHHHHHcCCHHHHHhhhcC----C-------CHHHHHHHHHHHHHHhhCCHHHHHHHHh-cC
Q psy355 42 IGALDNLSDY--VCSIDYANDFLKMGGLPVLQPLLEG----S-------DPELRWRAAETVADIVQNNPFSQNFIIQ-TD 107 (285)
Q Consensus 42 ~~al~~L~~l--v~~~dna~~~~~~Gg~~~Lv~lL~s----~-------~~~vr~~A~~~lg~~a~nn~~~q~~v~~-~g 107 (285)
..-|..|.-. ...+++...|. .||+..|+.+|.. + +...+..++++|..+. |+..--+.++. .+
T Consensus 23 ~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~ 100 (386)
T 2bnx_A 23 LSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEE 100 (386)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSS
T ss_pred HHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcH
Confidence 3344555443 24578899996 6899999887751 1 4578899999999888 55555555554 47
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCCh-Hh-HHHHH----------hcCcHHHHHHhhcc-CcHHHHHHHHHHH
Q psy355 108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE-EC-LKEFI----------KRDGFSVLLRCIQS-KKEKLVIKSCFLI 174 (285)
Q Consensus 108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~-~~-~~~f~----------~~~gi~~L~~~L~~-~~~~v~~ka~~~l 174 (285)
++..|...|.+ +.+.+++.++--|+.+|--.. .+ ...++ +..-+..+++.+.. .+..++..+..+|
T Consensus 101 ~i~~l~~sL~s-~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lI 179 (386)
T 2bnx_A 101 GILLLVRAMDP-AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLI 179 (386)
T ss_dssp HHHHHHHTCCT-TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 89999999985 678899888877777665332 12 22221 23456788888884 5788999999999
Q ss_pred HHHhcCCc------hHHHHHHHCCcHHHHHHhcccC
Q psy355 175 ACLCTDNN------QVKQVLLSMGMVEQMCVLIDIE 204 (285)
Q Consensus 175 ~~L~~~~~------~~~~~l~~~g~v~~L~~lL~~~ 204 (285)
..++.+.+ ..+..+...|+.+.+-.+=...
T Consensus 180 N~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~ 215 (386)
T 2bnx_A 180 NALITPAEELDFRVHIRSELMRLGLHQVLQELREIE 215 (386)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccC
Confidence 99998865 4677888888888776554333
No 90
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.98 E-value=0.039 Score=51.44 Aligned_cols=126 Identities=12% Similarity=0.127 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHH
Q psy355 76 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVL 155 (285)
Q Consensus 76 s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L 155 (285)
.+++..+..|+..|......-|..++. ++..++.|+.. .+..||+.|+-.|..+|++ .....+ ..+|
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcED-ed~~IR~qaik~Lp~~ck~--~~i~ki-----aDvL 105 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCED-EDVSIRRQAIKELPQFATG--ENLPRV-----ADIL 105 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTC-SSHHHHHHHHHHGGGGCCT--TCHHHH-----HHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhc-ccHHHHHHHHHhhHHHhhh--hhhhhH-----HHHH
Confidence 357999999999999999999998876 56779999995 6899999999999999997 333333 4688
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 156 LRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 156 ~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
+++|++++..-..-+-..+..|...+| .|.+..+...+.++ +..+|++++..|..-+..
T Consensus 106 ~QlLqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~---~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 106 TQLLQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQG---EDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHS---CHHHHHHHHHHHHHHGGG
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHccc---chHHHHHHHHHHHHHHhh
Confidence 999999887777777777777777665 34566666666667 889999999988765544
No 91
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.95 E-value=0.013 Score=59.47 Aligned_cols=144 Identities=8% Similarity=0.111 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc-----CcHHH----HHHhhccC--CCHHHHHHHHHHHHHHhhCChHhHH
Q psy355 76 GSDPELRWRAAETVADIVQNNPFSQNFIIQT-----DFLNL----LLTSIEHD--SNTTVQVKSLYAVSCLVRDNEECLK 144 (285)
Q Consensus 76 s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~-----g~l~~----L~~LL~~~--~~~~v~~~a~~ALs~l~r~~~~~~~ 144 (285)
+++...|..|..++|.++.+...+.. .... ...+. ++..|... ..+-+|..|+|+|+.++...++ +
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~--~ 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK--A 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH--H
T ss_pred chhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH--H
Confidence 56778999999999999864210000 0000 12222 22334432 2789999999999998775432 1
Q ss_pred HHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC-------ch-----HHHHHHHCCcHHHHHHhcccCCC--CCcc
Q psy355 145 EFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-------NQ-----VKQVLLSMGMVEQMCVLIDIEDA--LDTE 210 (285)
Q Consensus 145 ~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~-------~~-----~~~~l~~~g~v~~L~~lL~~~~~--~d~~ 210 (285)
+. ...++.+++.|.+++..|+..|++++.+++... +. ...++ ..+++.|..++....+ ....
T Consensus 493 -~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l--~~ll~~L~~ll~~~~~~~~~~~ 568 (960)
T 1wa5_C 493 -QL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST--EILLKNLIALILKHGSSPEKLA 568 (960)
T ss_dssp -HH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH--HHHHHHHHHHHHTTCCCHHHHT
T ss_pred -HH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH--HHHHHHHHHHHHhccCCCCccc
Confidence 21 245788888998889999999999999998731 11 11122 1355566666665300 0011
Q ss_pred HHHHHHHHHHHHHhcC
Q psy355 211 MNEHLLSALASLIKDS 226 (285)
Q Consensus 211 ~~e~al~aL~~l~~~~ 226 (285)
..+.++.+|..++...
T Consensus 569 ~~e~l~~al~~vv~~~ 584 (960)
T 1wa5_C 569 ENEFLMRSIFRVLQTS 584 (960)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3356777777766543
No 92
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.89 E-value=0.11 Score=45.79 Aligned_cols=205 Identities=14% Similarity=0.150 Sum_probs=122.9
Q ss_pred CCHHhHHHHHHHHHHhc------CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHH---
Q psy355 1 MNEANRGFLLDALNSMM------VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQ--- 71 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~------~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv--- 71 (285)
|+|++..=|++.++.+. .++ ..+.-..+++ ....+.+..+++-|+-.+-..+-+.-|+..+.-..++
T Consensus 77 Ls~~el~~L~~l~~~l~~~s~~~~~~-~~l~~l~kil---~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l 152 (304)
T 3ebb_A 77 LTEDDLILLEKILSLICNSSSEKPTV-QQLQILWKAI---NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHL 152 (304)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSSCCCH-HHHHHHHHHH---TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhccCCCccch-HHHHHHHHHH---cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHH
Confidence 45666666666555432 111 1222222222 3445788899999998887666555555444333343
Q ss_pred -hhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhc--CcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH--hHHH
Q psy355 72 -PLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE--CLKE 145 (285)
Q Consensus 72 -~lL~-s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~--g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~--~~~~ 145 (285)
..+. ...|..+.-++++++|+-.+ +..++.++.. .+++.+...+. +.+..+|..+...+-|++..... ..+.
T Consensus 153 ~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~-~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 153 INLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKS-GSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGS-SCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 3333 24577899999999999975 4456666542 24444444444 35788998888777777542110 0011
Q ss_pred HHhcCcHHHHHHhhcc-CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHH
Q psy355 146 FIKRDGFSVLLRCIQS-KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL 215 (285)
Q Consensus 146 f~~~~gi~~L~~~L~~-~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~a 215 (285)
-. -.+..+..++.. .+.+..-++.-++++|+..+++.++.....|+-..+-+..+.+ ...++.+.+
T Consensus 231 ~~--~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~--~~~kv~~~~ 297 (304)
T 3ebb_A 231 KA--QCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVS--EPAKVSECC 297 (304)
T ss_dssp HH--HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCC--SSHHHHHHH
T ss_pred HH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCC--CchhHHHHH
Confidence 00 023444455543 4788999999999999988777777777777777766666553 144455543
No 93
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.85 E-value=0.31 Score=45.52 Aligned_cols=195 Identities=14% Similarity=0.122 Sum_probs=117.0
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhhcCc----chHHHHHHcCCHHH-HH-hhhcCCCHHHHHHHHHHHHHHhhCCHH
Q psy355 25 EKIIKTLKENQDQKDICIGALDNLSDYVCSI----DYANDFLKMGGLPV-LQ-PLLEGSDPELRWRAAETVADIVQNNPF 98 (285)
Q Consensus 25 k~~l~~l~~~~~~~~~~~~al~~L~~lv~~~----dna~~~~~~Gg~~~-Lv-~lL~s~~~~vr~~A~~~lg~~a~nn~~ 98 (285)
+-.+..|..... ++...-.|.-+.+++... ..+.-|.+...... +. .++..+++-....|+.+++-+++.++.
T Consensus 80 ~~~l~lL~~~~~-~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~ 158 (480)
T 1ho8_A 80 IPLIHLLSTSDN-EDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLH 158 (480)
T ss_dssp HHHHHHHHSCCC-HHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTC
T ss_pred HHHHHHHhhcCh-HHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCCc
Confidence 445555555332 444445556666666552 33445666554432 33 345556667778888888888765544
Q ss_pred HHHHHHhcCcHH--HHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCc--HHHHHHhhcc-------------
Q psy355 99 SQNFIIQTDFLN--LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDG--FSVLLRCIQS------------- 161 (285)
Q Consensus 99 ~q~~v~~~g~l~--~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~g--i~~L~~~L~~------------- 161 (285)
..+.+ .+.+. -++..|.+.++...+--++.+++.+.|. +.....|.+.+| +++++.+++.
T Consensus 159 ~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~ 235 (480)
T 1ho8_A 159 NVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 235 (480)
T ss_dssp CHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred cHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence 22221 11222 3445565422344466788889999884 556667877665 4555443321
Q ss_pred ---C-cHHHHHHHHHHHHHHhcCCchHHHHHHHCCcH--HHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 162 ---K-KEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV--EQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 162 ---~-~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v--~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+ ...++=.+++++--|+-. +.....+...++. +.|+..++.. .-.++...++.+|.|++...
T Consensus 236 ~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s--~KEKvvRv~la~l~Nll~~~ 303 (480)
T 1ho8_A 236 NSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKIT--IKEKVSRLCISIILQCCSTR 303 (480)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHTTSSS
T ss_pred cCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhccc
Confidence 1 356677778877766554 4577888877754 6677777764 14678888888999998876
No 94
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.77 E-value=0.0093 Score=60.33 Aligned_cols=141 Identities=13% Similarity=0.098 Sum_probs=93.0
Q ss_pred cCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH
Q psy355 75 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH--DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF 152 (285)
Q Consensus 75 ~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~--~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi 152 (285)
.+++...+..|+++||.++.+-... ....++.++..+.. ++++.+|..++|+|+.++....... .++ ...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence 5678889999999999999763321 12334444443321 1467899999999999876322222 344 3678
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhcCCchH-HHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 153 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQV-KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 153 ~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~-~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+.|+..|++ ++++..|++++.+++...+.. ..++ ..++..|..++..+ ..+...++.++.++..++...+
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~-~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQ-IHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhcCC
Confidence 888888864 799999999999999653221 1111 12444555566643 1245788999999999987553
No 95
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.55 E-value=0.056 Score=55.07 Aligned_cols=172 Identities=17% Similarity=0.155 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhh--CCHHHHHHHHhcCcHHHHHHh
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQ--NNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~--nn~~~q~~v~~~g~l~~L~~L 115 (285)
=..++.||..+..+++.....-...--..+|.+-.++-...++|...|..++..+|+ .|..+ ...+|.|++.
T Consensus 148 w~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~ 221 (986)
T 2iw3_A 148 WQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQC 221 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHH
Confidence 378999999999999754222222222346666777778999999999999999887 34432 3579999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhhC--ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC--CchHHHHHHHC
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRD--NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD--NNQVKQVLLSM 191 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~--~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~--~~~~~~~l~~~ 191 (285)
+.+ ++ . ..+++..||.-+-- -....-+++ +|+|.+.|......++++++-.+-|+|.- +|.....++ -
T Consensus 222 ~~~-p~-~-~~~~~~~l~~~tfv~~v~~~~l~~~----~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~ 293 (986)
T 2iw3_A 222 IAD-PT-E-VPETVHLLGATTFVAEVTPATLSIM----VPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-G 293 (986)
T ss_dssp HHC-TT-H-HHHHHHHHTTCCCCSCCCHHHHHHH----HHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-T
T ss_pred hcC-hh-h-hHHHHHHhhcCeeEeeecchhHHHH----HHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-h
Confidence 996 33 3 56778888875432 111222333 68889999988999999999999999974 666666655 3
Q ss_pred CcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 192 GMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 192 g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
..+|.|-+....- .+|+.|+.+..++..|.+.
T Consensus 294 ~l~p~~~~~~~~~--~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 294 KLLPGLKSNFATI--ADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp TTHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhhcc--CCHHHHHHHHHHHHHHHHh
Confidence 5666666655543 4899999999888888543
No 96
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.53 E-value=0.0071 Score=61.39 Aligned_cols=138 Identities=9% Similarity=0.073 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhh---c-cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH
Q psy355 77 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSI---E-HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF 152 (285)
Q Consensus 77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL---~-~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi 152 (285)
++...+..|+.++|.++.+-+... ...++.++.++ . ++.++.+|..++|+|+.++.-..... .++ ...+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l-~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI-PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH-HHHH
Confidence 567799999999999998754322 23444444433 2 23478999999999999875311111 111 1345
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 153 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 153 ~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+.|+..| + ++++..|++++.+++..-.....-.. .+++..+..++..+ ..+.+.++.++.++..++..-
T Consensus 549 ~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~-~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 549 NLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTG-RMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHST-TSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCC-CCChHHHHHHHHHHHHHHHhC
Confidence 6677777 2 78999999999999975432222111 24556666777764 125678999999999998754
No 97
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.50 E-value=0.097 Score=53.95 Aligned_cols=214 Identities=14% Similarity=0.119 Sum_probs=119.3
Q ss_pred HHhHHHHHHHHHHhcCC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcC----C
Q psy355 3 EANRGFLLDALNSMMVN-VGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEG----S 77 (285)
Q Consensus 3 ~e~~~~L~~al~~~~~d-~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s----~ 77 (285)
+.-|.|+..|+...... -+..|++. +.+..-+..+...++..+...+. . +... +..+..++++ .
T Consensus 339 ~~~r~~~lDal~~aGT~~a~~~i~~~---i~~~~l~~~ea~~~l~~~~~~~~-P-t~e~------l~~~~~l~~~~~~~~ 407 (1056)
T 1lsh_A 339 KDYRRWILDAVPAMATSEALLFLKRT---LASEQLTSAEATQIVASTLSNQQ-A-TRES------LSYARELLNTSFIRN 407 (1056)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHH---HHTTCSCHHHHHHHHHHHHHTCC-C-CHHH------HHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHhHhcCCHHHHHHHHHH---HHcCCCCHHHHHHHHHHhhccCC-C-CHHH------HHHHHHHHhCccccc
Confidence 34577888888888522 24444444 45555455554444444333332 1 1222 3445556665 4
Q ss_pred CHHHHHHHHHHHHHHhhCCHHHHHH-HHhcCcHHHHHHhh----ccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH
Q psy355 78 DPELRWRAAETVADIVQNNPFSQNF-IIQTDFLNLLLTSI----EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF 152 (285)
Q Consensus 78 ~~~vr~~A~~~lg~~a~nn~~~q~~-v~~~g~l~~L~~LL----~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi 152 (285)
++.++..|.-++|+++.. .|... ......++++.++| .. .+..-+.-++.||+|+ |+|.. +
T Consensus 408 ~~~l~~ta~La~gslV~k--~c~~~~~c~~~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~--g~p~~---------l 473 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFR--YCANTVSCPDELLQPLHDLLSQSSDR-AKEEEIVLALKALGNA--GQPNS---------I 473 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHH--HHTTCSSCCGGGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--TCGGG---------H
T ss_pred CHHHHHHHHHHHHHHHHH--HhccCCCCCHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhcc--CChhH---------H
Confidence 678899999999988732 22210 11113355555544 43 4567788999999997 45543 4
Q ss_pred HHHHHhhc-------cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 153 SVLLRCIQ-------SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 153 ~~L~~~L~-------~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
+.|..++. +...++|..|.|++..+....|... -+.+..+..+. ..++++|-.|+..| +..
T Consensus 474 ~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~-~e~~EvRiaA~~~L---m~t 541 (1056)
T 1lsh_A 474 KKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNV-AIKSELRIRSCIVF---FES 541 (1056)
T ss_dssp HHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCT-TSCHHHHHHHHHHH---HHT
T ss_pred HHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCC-CCChHHHHHHHHHH---HHH
Confidence 44455553 2357899999999999987665332 23344555332 12778887777666 343
Q ss_pred ChHH--Hh-----hcccCcccHHHHHHHHHHHccC
Q psy355 226 STEA--QS-----LCRLEPLNLKFKLNFIKEKHAG 253 (285)
Q Consensus 226 ~~~~--~~-----~~~~~~~~l~~~l~~~~~~l~~ 253 (285)
+|.. +. .-..+...+..++..+++.+..
T Consensus 542 ~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 542 KPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp CCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 4421 10 1122333455556666665543
No 98
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.45 E-value=0.012 Score=60.47 Aligned_cols=143 Identities=11% Similarity=0.055 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc----CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH
Q psy355 77 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH----DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF 152 (285)
Q Consensus 77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~----~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi 152 (285)
.+...+..|++++|.++.........-.-..+++.|+.+... ++.+.++..++|++|.+++-..... .++ ...+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l-~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFL-RTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHH-HHHH
Confidence 677899999999999986533221111112245555554432 1234555579999998764221111 222 2356
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHH------CCcHH----HHHHhcccCCCCCccHHHHHHHHHHHH
Q psy355 153 SVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLS------MGMVE----QMCVLIDIEDALDTEMNEHLLSALASL 222 (285)
Q Consensus 153 ~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~------~g~v~----~L~~lL~~~~~~d~~~~e~al~aL~~l 222 (285)
+.++..|.+++++|+..||+++.+++... ...++. ...++ .+..++... +.+-...+..++..+
T Consensus 543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~---~~~l~~~~~~~~~p~~~~il~~l~~~~~~~---~~~~~~~~~eai~~i 616 (1049)
T 3m1i_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQKC---KYHFVIQQPRESEPFIQTIIRDIQKTTADL---QPQQVHTFYKACGII 616 (1049)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHH---THHHHSCCTTCSSCHHHHHHHTHHHHHTTS---CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHHhhcccCCCCCcHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHH
Confidence 77888888889999999999999999752 222220 12233 333444443 444566777888877
Q ss_pred HhcCh
Q psy355 223 IKDST 227 (285)
Q Consensus 223 ~~~~~ 227 (285)
+...+
T Consensus 617 i~~~~ 621 (1049)
T 3m1i_C 617 ISEER 621 (1049)
T ss_dssp HHTCC
T ss_pred HHcCC
Confidence 76554
No 99
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.41 E-value=0.039 Score=49.54 Aligned_cols=185 Identities=14% Similarity=0.216 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~ 118 (285)
.....+++-|.-+.++.+-...|++..|+..+....+.++.++....+..+-.++....-|.--+ ...+|-++..+..
T Consensus 258 QVvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 258 QVIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhcc
Confidence 45667888888888887777789999999999999999999999999999987764322221111 3578888888876
Q ss_pred CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc-------CcHHHHHHHHHHHHHHhcC-----------
Q psy355 119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS-------KKEKLVIKSCFLIACLCTD----------- 180 (285)
Q Consensus 119 ~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~-------~~~~v~~ka~~~l~~L~~~----------- 180 (285)
.++..+......-|||.+.|..+..+--+..|+++.|-..+.. .+..-+..||..++|-.+.
T Consensus 336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm 415 (619)
T 3c2g_A 336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPT 415 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEec
Confidence 6778899999999999999998888888889999988766542 2445566777777765421
Q ss_pred --------Cc---hHHHHHHHCCcHHHHHHhcccCCCCC---ccHHHHHHHHHHHHHhc
Q psy355 181 --------NN---QVKQVLLSMGMVEQMCVLIDIEDALD---TEMNEHLLSALASLIKD 225 (285)
Q Consensus 181 --------~~---~~~~~l~~~g~v~~L~~lL~~~~~~d---~~~~e~al~aL~~l~~~ 225 (285)
++ .+...+++..+++.|+..|+.+.-+- -++|...++...-++..
T Consensus 416 ~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRT 474 (619)
T 3c2g_A 416 PNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRT 474 (619)
T ss_dssp TTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTC
T ss_pred CCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcC
Confidence 11 34456677788888888887651111 24566666665555443
No 100
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.40 E-value=0.14 Score=43.79 Aligned_cols=197 Identities=16% Similarity=0.205 Sum_probs=129.1
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCc-chHHHH-HHcCCHHHHHh-------hhcCCC--H--HHH-HHHHH
Q psy355 22 AELEKIIKTLKENQDQKDICIGALDNLSDYVCSI-DYANDF-LKMGGLPVLQP-------LLEGSD--P--ELR-WRAAE 87 (285)
Q Consensus 22 ~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~-dna~~~-~~~Gg~~~Lv~-------lL~s~~--~--~vr-~~A~~ 87 (285)
+.+-+.+..|.+++ .+..|+-+|..--++. |-|--+ +.-|.+..|+. .|..+. + .-| ..|+.
T Consensus 3 ~~i~qli~~L~~p~----~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa 78 (268)
T 2fv2_A 3 EKIYQWINELSSPE----TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA 78 (268)
T ss_dssp HHHHHHHHHTSSTT----THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCch----hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence 34455555555544 6889999999887775 444443 55666666643 222211 1 122 33444
Q ss_pred HHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC----CHHHHHHHHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhccC
Q psy355 88 TVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS----NTTVQVKSLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSK 162 (285)
Q Consensus 88 ~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~----~~~v~~~a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~ 162 (285)
.+-.+|+ +|+.+..|++++..-.|...|.... -+-+|-.++..|+.+++...+ .+.-+++...+|..++.|..+
T Consensus 79 LlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G 157 (268)
T 2fv2_A 79 LLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG 157 (268)
T ss_dssp HHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence 4455665 6778999999987666666666421 257888999999999986544 444455778899999999999
Q ss_pred cHHHHHHHHHHHHHHhcCCchH------HHHH-HHCCcHHHHHH-hcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 163 KEKLVIKSCFLIACLCTDNNQV------KQVL-LSMGMVEQMCV-LIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 163 ~~~v~~ka~~~l~~L~~~~~~~------~~~l-~~~g~v~~L~~-lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+.-.|.-|+|.+..+...+... .+.+ .-..++..++. +.+.+ ++.+..++.++-..|..+.
T Consensus 158 selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~p---s~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 158 SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEP---SARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSC---CHHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHhcCH
Confidence 9999999999999998764211 0111 11123434443 33455 7888999999998877554
No 101
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.31 E-value=0.0037 Score=58.37 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhhcCcchHHHH-HHcCCHHHHHhhhcC
Q psy355 6 RGFLLDALNSMMVNVGAELEKIIKTLKEN--------QDQKDICIGALDNLSDYVCSIDYANDF-LKMGGLPVLQPLLEG 76 (285)
Q Consensus 6 ~~~L~~al~~~~~d~~~~mk~~l~~l~~~--------~~~~~~~~~al~~L~~lv~~~dna~~~-~~~Gg~~~Lv~lL~s 76 (285)
.=|-+.|.+ +..++++.+|..+++|... +.+.....-|+.++.++|.-..+.+.+ -+.||=..++.|+.|
T Consensus 380 ~FW~ENa~k-f~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h 458 (480)
T 1ho8_A 380 GFWSDNIDE-FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNH 458 (480)
T ss_dssp HHHHHHSGG-GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSC
T ss_pred hHHHHHHHH-HHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcC
Confidence 447777744 5578999999999999753 122456888999999999887666654 678888899999999
Q ss_pred CCHHHHHHHHHHHHHHhhCC
Q psy355 77 SDPELRWRAAETVADIVQNN 96 (285)
Q Consensus 77 ~~~~vr~~A~~~lg~~a~nn 96 (285)
++++||..|+.++..+..+|
T Consensus 459 ~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 459 SDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp SSHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999887644
No 102
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=96.25 E-value=0.016 Score=46.80 Aligned_cols=120 Identities=14% Similarity=0.131 Sum_probs=76.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCc-chHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHH
Q psy355 12 ALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVA 90 (285)
Q Consensus 12 al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~-dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg 90 (285)
||-.+.......+.+.++..+++....++- ...-++.+++..- +.+.+ ++..|.+-|+++++.++..|+.+|-
T Consensus 2 ~mg~~~~~~~s~~~~~IekATs~~l~~~Dw-~~ileicD~I~~~~~~~k~-----A~ral~krl~~~n~~vql~AL~LLd 75 (171)
T 1juq_A 2 AMGSMAEAEGESLESWLNKATNPSNRQEDW-EYIIGFCDQINKELEGPQI-----AVRLLAHKIQSPQEWEALQALTVLE 75 (171)
T ss_dssp ----------CCHHHHHHHHTCTTCSSCCH-HHHHHHHHHHHHSTTHHHH-----HHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred CcccCCCCCCCcHHHHHHHHcCCCCCCcCH-HHHHHHHHHHHcCCccHHH-----HHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 444443222334667777777766433332 2222444444322 23333 3566777889999999999999999
Q ss_pred HHhhCC-HHHHHHHHhcCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhh
Q psy355 91 DIVQNN-PFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVR 137 (285)
Q Consensus 91 ~~a~nn-~~~q~~v~~~g~l~~L~~LL~~-----~~~~~v~~~a~~ALs~l~r 137 (285)
.++.|. +.++..|.+...+..|++++.. ..+..|+.+++..|-.-..
T Consensus 76 ~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 76 ACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 999995 5677788888999999999963 2467999998877766543
No 103
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.23 E-value=0.6 Score=41.53 Aligned_cols=167 Identities=13% Similarity=0.134 Sum_probs=109.9
Q ss_pred HHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC---cHHHHHHhhccCcHHHHHHHHHH
Q psy355 97 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD---GFSVLLRCIQSKKEKLVIKSCFL 173 (285)
Q Consensus 97 ~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~---gi~~L~~~L~~~~~~v~~ka~~~ 173 (285)
+.+...++..+.+..+.+.+.. ++-.|...|...+-.+...|......|+..+ -+...-.+|.+++.-+|+.+.-+
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~-~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEM-STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTC-SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcC-CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 3344455555555666666664 5678888888888888777777777888765 34566788999999999999999
Q ss_pred HHHHhcC--CchH-HHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC--hHHH-hhcccCcccHHHHHHHH
Q psy355 174 IACLCTD--NNQV-KQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS--TEAQ-SLCRLEPLNLKFKLNFI 247 (285)
Q Consensus 174 l~~L~~~--~~~~-~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~--~~~~-~~~~~~~~~l~~~l~~~ 247 (285)
|+.|... +..+ .+++-+..-+..++.+|++. ...++-.|.....-.+.+. |+.+ .--...+-.|...+.
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~---sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~-- 307 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK---SRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS-- 307 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHH--
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc---hhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHH--
Confidence 9999876 3333 34444556788999999998 8899988888877666443 1111 111111112222222
Q ss_pred HHHccC----hHhhHHHHHHHHHHHHHh
Q psy355 248 KEKHAG----NEVYHKELEHVNSVLTEV 271 (285)
Q Consensus 248 ~~~l~~----~~e~~~~~~~~~~il~~~ 271 (285)
..+. .+++.+|-.+.-+-|+..
T Consensus 308 --~f~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 308 --KFQNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp --HTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred --hCCCCCcchhhHHHHHHHHHHHHHhC
Confidence 2221 235677777777766655
No 104
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.15 E-value=0.049 Score=55.31 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=49.0
Q ss_pred HHhhhcCC---CHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355 70 LQPLLEGS---DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD 138 (285)
Q Consensus 70 Lv~lL~s~---~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~ 138 (285)
++..|+++ +|-||..|+|+||..+..-+ .+.+ ..+++.+++.|.+ ++..|+..|++||.+++..
T Consensus 460 v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~l--~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 460 IAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQL--IELMPILATFLQT-DEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp THHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHHH--HHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTC
T ss_pred hHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHHH--HHHHHHHHHHhCC-CChhHHHHHHHHHHHHHhc
Confidence 34446666 99999999999999987521 1222 3478888888875 5789999999999998873
No 105
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.94 E-value=0.05 Score=55.16 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh---hc--CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHH
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL---LE--GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 113 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l---L~--s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~ 113 (285)
..+..|+-.+.-+.+....... ..++.++.+ |. .+++.||..|+|+||..+.--....+.+ ..++|.|+
T Consensus 479 ~~~eaal~~l~~iae~~~~~~~----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~ 552 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEEK----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLV 552 (971)
T ss_dssp HHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcChhhh----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHH
Confidence 4666777777777665432111 223333332 23 2489999999999999874211111111 13566677
Q ss_pred HhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcC
Q psy355 114 TSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 114 ~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~ 180 (285)
..|+ +.++..|++|+.++++........++ ...+..+..++..+ +.+.+..+..++..++..
T Consensus 553 ~~l~----~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 553 RGLN----SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHH----SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHhC----hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 6663 46899999999999987765544443 23455666777763 578888888888888765
No 106
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.88 E-value=0.17 Score=51.07 Aligned_cols=176 Identities=15% Similarity=0.128 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh---hcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHh
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL---LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l---L~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~L 115 (285)
..+..++..+.-+.+...... ..-++.++.. +.++++.||..++|+||..+.--....+ .+ ..+++.|+..
T Consensus 464 ~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~ 537 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHA 537 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHH
Confidence 556667777776666543210 0112333332 2346899999999999998752111112 22 3688888888
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC--cHHHHHHHHHHHHHHhcCCc-hHHHHHHHCC
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK--KEKLVIKSCFLIACLCTDNN-QVKQVLLSMG 192 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~--~~~v~~ka~~~l~~L~~~~~-~~~~~l~~~g 192 (285)
|.+ +.|+..|++|+.++++..+.....++ ...++.|..++..+ +.+.+..+..+++.++..-+ +.....+ ..
T Consensus 538 l~~---~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-~~ 612 (963)
T 2x19_B 538 LGN---PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-HS 612 (963)
T ss_dssp TTC---GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-HH
T ss_pred hCC---chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-HH
Confidence 853 67999999999999986544321111 12234445555542 57888888888998887543 3333332 23
Q ss_pred cHHHHHHhccc--CCCCCccHHH---HHHHHHHHHHhc
Q psy355 193 MVEQMCVLIDI--EDALDTEMNE---HLLSALASLIKD 225 (285)
Q Consensus 193 ~v~~L~~lL~~--~~~~d~~~~e---~al~aL~~l~~~ 225 (285)
+++++...+.. .+..+++.+. .++.+|..+.+.
T Consensus 613 l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~ 650 (963)
T 2x19_B 613 LISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTT 650 (963)
T ss_dssp HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55555544432 0001333333 555666555543
No 107
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=95.73 E-value=0.066 Score=42.83 Aligned_cols=105 Identities=14% Similarity=0.099 Sum_probs=72.1
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHH
Q psy355 26 KIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFI 103 (285)
Q Consensus 26 ~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~~v 103 (285)
+.++..+++....++-...+ ++.+++.. .+.+.+ ++..|.+-|++.++.++..|+.+|-.+++| .+.++..|
T Consensus 18 ~~IekATs~~~~~~Dw~~~l-eicD~I~~~~~~~ke-----A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~ev 91 (163)
T 1x5b_A 18 QDVEKATNEYNTTEDWSLIM-DICDKVGSTPNGAKD-----CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEV 91 (163)
T ss_dssp HHHHHHTCTTCSSCCHHHHH-HHHHHHHHSSSHHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHH-HHHHHHhCCCccHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 55666666653322222222 33343322 233333 355677788999999999999999999998 47788788
Q ss_pred HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 136 (285)
Q Consensus 104 ~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~ 136 (285)
.....+..|++++....++.|+.+++..|-.-.
T Consensus 92 as~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 92 CSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp TSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 888899999999986567899999887665443
No 108
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.29 Score=41.91 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=97.9
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH--HH-HHhcC-cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ--NF-IIQTD-FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC 142 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q--~~-v~~~g-~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~ 142 (285)
+| |-.-|.|.+-..|..|...+..+.++++... +. +...+ ..+.+-+.+. |++..+..+++.+|..++......
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC--
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhh
Confidence 44 5567899999999999999999888766432 11 11123 3344455665 689999999999999998753221
Q ss_pred -----HHHHHhcCcHHHHH-HhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHH
Q psy355 143 -----LKEFIKRDGFSVLL-RCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLL 216 (285)
Q Consensus 143 -----~~~f~~~~gi~~L~-~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al 216 (285)
.....-...++.|+ ++|.++..+++..|..++..++...... . -+++.+...+.+. ++.++..++
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~K---npkv~~~~l 160 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKK---LPKLIAAAA 160 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCS---CHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhcc---CHHHHHHHH
Confidence 11111123456565 4678888999999888887776432111 0 1346667778888 999999999
Q ss_pred HHHHHHHhc
Q psy355 217 SALASLIKD 225 (285)
Q Consensus 217 ~aL~~l~~~ 225 (285)
..|..++..
T Consensus 161 ~~l~~~l~~ 169 (278)
T 4ffb_C 161 NCVYELMAA 169 (278)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 109
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.50 E-value=1 Score=38.50 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhccC---CC---HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCC-----HHHHHHHHHHH
Q psy355 21 GAELEKIIKTLKENQ---DQ---KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSD-----PELRWRAAETV 89 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~---~~---~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~-----~~vr~~A~~~l 89 (285)
+-.++|++.+...-+ -+ ......||.-|...+...+....|.+....-.|.++|+..+ .-+|-.++.+|
T Consensus 47 a~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVI 126 (268)
T 2fv2_A 47 AALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVI 126 (268)
T ss_dssp HHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHH
Confidence 566777777654433 23 24567888888999888999999999986667778887433 47999999999
Q ss_pred HHHhh-CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHH-------hc-CcHHHH-HHhh
Q psy355 90 ADIVQ-NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFI-------KR-DGFSVL-LRCI 159 (285)
Q Consensus 90 g~~a~-nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~-------~~-~gi~~L-~~~L 159 (285)
|.++. +++++-..+++.+++|..++.+.. .++--|.-|.+-+..|.-+ ..+...+. .. ..+..+ ..+.
T Consensus 127 gaLvK~dd~eVi~fLL~tEiiplCLrime~-GselSKtvAtfIlqKIL~d-d~GL~YiC~t~eRF~av~~vL~~mV~~l~ 204 (268)
T 2fv2_A 127 GALVKTDEQEVINFLLTTEIIPLCLRIMES-GSELSKTVATFILQKILLD-DTGLAYICQTYERFSHVAMILGKMVLQLS 204 (268)
T ss_dssp HHHGGGCCHHHHHHHHHTTHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCcHHHHHHHHhhhHHHHHHHHHhh-ccHHHHHHHHHHHHHHhcc-chhHHHHHccHHHHHHHHHHHHHHHHHHh
Confidence 99987 677888889999999999999998 5678888999999888754 33332222 11 122222 2333
Q ss_pred ccCcHHHHHHHHHHHHHHhcCCchHHHHHH
Q psy355 160 QSKKEKLVIKSCFLIACLCTDNNQVKQVLL 189 (285)
Q Consensus 160 ~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~ 189 (285)
+.+++++.+....+-..|+ .+|..++.+.
T Consensus 205 ~~ps~RLLKhiircYlRLs-dn~rar~aL~ 233 (268)
T 2fv2_A 205 KEPSARLLKHVVRCYLRLS-DNPRAREALR 233 (268)
T ss_dssp TSCCHHHHHHHHHHHHHHT-TSHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHh-cCHHHHHHHH
Confidence 4567788777777666653 3454544443
No 110
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.48 E-value=0.21 Score=51.48 Aligned_cols=177 Identities=16% Similarity=0.165 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh----hhcCCCHHHHHHHHHHHHHH
Q psy355 19 NVGAELEKIIKTLKENQ--DQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP----LLEGSDPELRWRAAETVADI 92 (285)
Q Consensus 19 d~~~~mk~~l~~l~~~~--~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~----lL~s~~~~vr~~A~~~lg~~ 92 (285)
...+.|+.....+..+. .....+..++-.+..++...=.....|....++.+.. .+...+.+-+..++++|||+
T Consensus 388 Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 388 ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 33566666666665543 2233344455555444422000001111222444444 34567788889999999998
Q ss_pred hhCCHHHHHHHHhcCcHHHHHHhhcc------CCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc--cCcH
Q psy355 93 VQNNPFSQNFIIQTDFLNLLLTSIEH------DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ--SKKE 164 (285)
Q Consensus 93 a~nn~~~q~~v~~~g~l~~L~~LL~~------~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~--~~~~ 164 (285)
.. | +.++.|.+++.. +....+|..|+|||..+....|...+.+ +..+.. ..+.
T Consensus 468 g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~i--------l~~i~~n~~e~~ 528 (1056)
T 1lsh_A 468 GQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEI--------VLPIFLNVAIKS 528 (1056)
T ss_dssp TC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHH--------HHHHHHCTTSCH
T ss_pred CC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHH--------HHHHhcCCCCCh
Confidence 75 3 367788888742 2245788999999999998777655444 366663 4579
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 165 KLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 165 ~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
.+|..|+.++- ..+|+. ..+..++..+..+ .+.++.-.+...|.+++...
T Consensus 529 EvRiaA~~~Lm---~t~P~~-------~~l~~ia~~l~~E--~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 529 ELRIRSCIVFF---ESKPSV-------ALVSMVAVRLRRE--PNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHH---HTCCCH-------HHHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHH---HHCcCH-------HHHHHHHHHHhhC--chHHHHHHHHHHHHHHHhcC
Confidence 99998887764 333422 3556666666653 26777777788888877666
No 111
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.46 E-value=0.11 Score=52.82 Aligned_cols=186 Identities=11% Similarity=0.107 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH---H
Q psy355 22 AELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP---F 98 (285)
Q Consensus 22 ~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~---~ 98 (285)
+.+++.++.+.... .++...|...+..++...-.... ...|.+..|.+.+....+. +.|+.+++.+++..+ .
T Consensus 14 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 14 KVLEELFQKLSVAT--ADNRHEIASEVASFLNGNIIEHD-VPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHHHHHHHTTCC--TTTHHHHHHHHHHHHTSSCSSSS-CCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTT
T ss_pred HHHHHHHhhccccc--hhHHHHHHHHHHHHHhccccccc-cchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCC
Confidence 33444444443322 35566777777777653211111 1135667777777765444 999999999995432 2
Q ss_pred HHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhccC-cHHHHHHHHHHHHH
Q psy355 99 SQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSK-KEKLVIKSCFLIAC 176 (285)
Q Consensus 99 ~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~-~~~v~~ka~~~l~~ 176 (285)
..-+++ +.+|.++..+. ++...||..|-.|+-.++...++ +.. ..+|.|+..|+++ ....+.-|..++..
T Consensus 89 ~e~~~~--~~~~~~~~~~~-dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~ 160 (986)
T 2iw3_A 89 VEPYIV--QLVPAICTNAG-NKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSA 160 (986)
T ss_dssp THHHHH--TTHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cccchH--HHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 223333 68899999888 47789999999999999887555 442 3478999999876 58899999999999
Q ss_pred HhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355 177 LCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 177 L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~ 224 (285)
|+...|.....-+ -.+||.+...+-.. .+++...+..++..++.
T Consensus 161 ~~~~~~~~~~~~~-~~~~p~~~~~~~d~---k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 161 MVDAAKDQVALRM-PELIPVLSETMWDT---KKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHSHHHHHHHH-HHHHHHHHHHTTCS---SHHHHHHHHHHHHHHGG
T ss_pred HHHHhHHHHHHhc-cchhcchHhhcccC---cHHHHHHHHHHHHHHHh
Confidence 9876554433322 24677777776665 67777777777766654
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.41 E-value=0.31 Score=41.26 Aligned_cols=142 Identities=10% Similarity=0.026 Sum_probs=96.3
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhh-CChHhHHHH
Q psy355 68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR-DNEECLKEF 146 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r-~~~~~~~~f 146 (285)
+....|.+++..++|..|+.+||.. ... ...++.+...+..+++=.||.-+..+++.++. -+|..
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---- 139 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---- 139 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----
Confidence 3444577889999999999999987 311 12566666656666777899999999999885 23331
Q ss_pred HhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 147 IKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 147 ~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
-++.+....+++++.+|+-|.-.+.--+.. +..+... .-+++.|..+...+ +--+|..+..+|..+.+.+
T Consensus 140 ----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp--~~ll~iL~~L~~D~---s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 140 ----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENP--NEAIRRIADLKEDV---SEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCH--HHHHHHHHTTTTCS---CHHHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCH--HHHHHHHHHhcCCh---HHHHHHHHHHHHHHHhhhC
Confidence 456778889999999999887665432221 1111000 01344555555554 6678888899999999999
Q ss_pred hHHHhhc
Q psy355 227 TEAQSLC 233 (285)
Q Consensus 227 ~~~~~~~ 233 (285)
|+.+...
T Consensus 210 Pd~V~~~ 216 (240)
T 3l9t_A 210 PDLVKIE 216 (240)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876533
No 113
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=95.36 E-value=0.13 Score=40.33 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=58.8
Q ss_pred CHHHHHhhhcCCCHHHHHHHHHHHHHHhhC-CHHHHHHHHhcCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHHh
Q psy355 66 GLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLV 136 (285)
Q Consensus 66 g~~~Lv~lL~s~~~~vr~~A~~~lg~~a~n-n~~~q~~v~~~g~l~~L~~LL~~-----~~~~~v~~~a~~ALs~l~ 136 (285)
++..|.+-|+|+++.++..|+.+|-.++.| .+.++..+.+...+..|++++.. ..+..|+.+++..|-.-.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 356677778999999999999999999998 56788888888999999999974 246899999887666544
No 114
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=95.00 E-value=0.14 Score=43.07 Aligned_cols=107 Identities=12% Similarity=0.181 Sum_probs=74.3
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQN 101 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~ 101 (285)
+.+.++..+++..+.++-.. .-++.+++.. .+.+.+ ++..|.+-|++++|.++..|+.+|..+++|. +.++.
T Consensus 9 ~~~~i~kAT~~~~~~~dw~~-ileicD~I~~~~~~~k~-----a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 9 FERLLDKATSQLLLETDWES-ILQICDLIRQGDTQAKY-----AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp HHHHHHHHTCTTCSSCCHHH-HHHHHHHHHTTSSCHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHH-HHHHHHHHhCCCccHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44566667776643333222 2233333332 233433 3566777788999999999999999999984 44677
Q ss_pred HHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355 102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 136 (285)
Q Consensus 102 ~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~ 136 (285)
.|.+...+..|.+++...++..|+.+++..|-.-.
T Consensus 83 eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 83 EVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 78788888889999987677899999987776654
No 115
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.97 E-value=0.13 Score=52.89 Aligned_cols=165 Identities=9% Similarity=-0.027 Sum_probs=98.2
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHhhcCcchH-HHHHHcCCHHHHHhhhcC-----C
Q psy355 9 LLDALNSMM-VNVGAELEKIIKTLK----ENQDQKDICIGALDNLSDYVCSIDYA-NDFLKMGGLPVLQPLLEG-----S 77 (285)
Q Consensus 9 L~~al~~~~-~d~~~~mk~~l~~l~----~~~~~~~~~~~al~~L~~lv~~~dna-~~~~~~Gg~~~Lv~lL~s-----~ 77 (285)
.++.|-.+. .+..+.++-.++.+. +.+.+=..+..++..+.-+.+.++.. .+-.-...++.|+.++.+ +
T Consensus 433 ~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~ 512 (1023)
T 4hat_C 433 EREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDN 512 (1023)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcc
Confidence 456665553 333455555555553 22233477888888888888876532 222222457788888764 3
Q ss_pred CHHHHHHHHHHHHHHhh---CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh------
Q psy355 78 DPELRWRAAETVADIVQ---NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK------ 148 (285)
Q Consensus 78 ~~~vr~~A~~~lg~~a~---nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~------ 148 (285)
.+.|+..++|+||..+. .+|..- ..++..|+.-+. ++++.++..|+||+.++|..+.. .+..
T Consensus 513 k~~v~~t~~~~lGry~~wl~~~~~~L-----~~vl~~L~~~l~-~~~~~v~~~A~~al~~l~~~c~~---~l~~~~~~e~ 583 (1023)
T 4hat_C 513 KAVVASDIMYVVGQYPRFLKAHWNFL-----RTVILKLFEFMH-ETHEGVQDMACDTFIKIVQKCKY---HFVIQQPRES 583 (1023)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHCHHHH-----HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHTH---HHHSCCTTCS
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHHH---HhhccCCCCC
Confidence 44566788899998654 233211 113333444443 35678999999999999986443 2321
Q ss_pred cCcHHH----HHHhhccCcHHHHHHHHHHHHHHhcCCc
Q psy355 149 RDGFSV----LLRCIQSKKEKLVIKSCFLIACLCTDNN 182 (285)
Q Consensus 149 ~~gi~~----L~~~L~~~~~~v~~ka~~~l~~L~~~~~ 182 (285)
..-++. +...+..-+.+-+..+.-+++.++..-|
T Consensus 584 ~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 111333 3333444467777888888998888744
No 116
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.90 E-value=0.77 Score=46.89 Aligned_cols=110 Identities=12% Similarity=0.092 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCC---CHHHHHHHHHHHHHHhhCC
Q psy355 20 VGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGS---DPELRWRAAETVADIVQNN 96 (285)
Q Consensus 20 ~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~---~~~vr~~A~~~lg~~a~nn 96 (285)
+++.+.+++...-++..+.+.+..|.+-|..+=+..+ +|.....+|.++ ++.+|..|+.+|-+..+.-
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l 74 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREW 74 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 5778889998777887777888888888887765533 577777887653 7899999999999988732
Q ss_pred HHH----HHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355 97 PFS----QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD 138 (285)
Q Consensus 97 ~~~----q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~ 138 (285)
+.. +...++.-++..+.+.-....+..+|.+.+.+++.++..
T Consensus 75 ~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~ 120 (980)
T 3ibv_A 75 NNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 120 (980)
T ss_dssp CTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 222 444555555555555211123468999999999988753
No 117
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=94.88 E-value=0.16 Score=42.55 Aligned_cols=107 Identities=10% Similarity=0.095 Sum_probs=73.1
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQN 101 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~ 101 (285)
+.+.++..+++..+.++-.. .-++.+++.. .+.+.+ ++..|.+-|+++++.++..|+.+|..++.|. +.++.
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~-~leicd~i~~~~~~~k~-----a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~ 79 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPS-ILLICDEINQKDVTPKN-----AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHE 79 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHH-HHHHHHHHHTTSSCHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHH-HHHHHHhhcCCCcCHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHH
Confidence 45666666676643222222 2224444432 233333 3456667788999999999999999999996 55777
Q ss_pred HHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355 102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 136 (285)
Q Consensus 102 ~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~ 136 (285)
.|.+...+..|++++...++..|+.+++..|-.-.
T Consensus 80 eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 80 EVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 78788899999999887667889988876655543
No 118
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.80 E-value=1.6 Score=37.31 Aligned_cols=190 Identities=11% Similarity=0.076 Sum_probs=120.1
Q ss_pred HHHHHHhccCC-CHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHH
Q psy355 26 KIIKTLKENQD-QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII 104 (285)
Q Consensus 26 ~~l~~l~~~~~-~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~ 104 (285)
+.++-|+.... ++++++..|....+++-..|. . +. -..++.++.+-..++.+||...+..|+.++...+...
T Consensus 16 ~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp-~-ll-~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~---- 88 (257)
T 3gs3_A 16 KVVDWCNELVIASPSTKCELLAKVQETVLGSCA-E-LA-EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL---- 88 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTG-G-GH-HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH----
T ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCH-h-HH-HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34444554443 457999999999997654332 1 11 1236777777677899999999999999996554322
Q ss_pred hcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH---------------HHHHHhhccCcHHHHHH
Q psy355 105 QTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF---------------SVLLRCIQSKKEKLVIK 169 (285)
Q Consensus 105 ~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi---------------~~L~~~L~~~~~~v~~k 169 (285)
..+++.|..|+.. .++.|.++++.+.+++ ++...+.++..++. ..++..+.+.+.-+|..
T Consensus 89 -~~~l~~L~~Ll~d-~d~~V~K~~I~~~~~i---Y~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~ 163 (257)
T 3gs3_A 89 -PHVINVVSMLLRD-NSAQVIKRVIQACGSI---YKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTN 163 (257)
T ss_dssp -HHHHHHHHHHTTC-SCHHHHHHHHHHHHHH---HHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHH
T ss_pred -HHHHHHHHHHHcC-CCHHHHHHHHHHHHHH---HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHH
Confidence 3468889999984 7899999999999988 45556656555441 24455666778888888
Q ss_pred HHHHHHHHhc--C--C-------------------chH-HHHHH--HCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 170 SCFLIACLCT--D--N-------------------NQV-KQVLL--SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 170 a~~~l~~L~~--~--~-------------------~~~-~~~l~--~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
|.-++..++. . . |-. ...+. -.+.+..|+.++.++ .-+......++.+|..|+
T Consensus 164 ~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~-~iss~~l~a~lnsL~~Ia 242 (257)
T 3gs3_A 164 AIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTT-HISSVNLIACTSSLCTIA 242 (257)
T ss_dssp HHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHHH
Confidence 8766665541 1 0 000 11222 124556666665543 111223556677777777
Q ss_pred hcChH
Q psy355 224 KDSTE 228 (285)
Q Consensus 224 ~~~~~ 228 (285)
+.-|+
T Consensus 243 k~RP~ 247 (257)
T 3gs3_A 243 KMRPI 247 (257)
T ss_dssp HHCGG
T ss_pred HhCcH
Confidence 66664
No 119
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.76 E-value=0.19 Score=38.99 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=70.8
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC-HHHHHHH
Q psy355 26 KIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN-PFSQNFI 103 (285)
Q Consensus 26 ~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn-~~~q~~v 103 (285)
+.++..+++..+.++-.. .-++.+++.. .+.+.+ ++..|.+-|++.+|.++..|+.+|-.++.|. +.++..+
T Consensus 8 ~~iekAT~~~l~~~dw~~-ileicD~I~~~~~~~k~-----a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~ev 81 (140)
T 3ldz_A 8 QDVEKATSEMNTAEDWGL-ILDICDKVGQSRTGPKD-----CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEV 81 (140)
T ss_dssp HHHHHHTCTTSSSCCHHH-HHHHHHHHTTSTTHHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHcCCCCCCcCHHH-HHHHHHHHHCCCcCHHH-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 445555565533333222 2334444433 223333 3566777889999999999999999999985 5567777
Q ss_pred HhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHh
Q psy355 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 136 (285)
Q Consensus 104 ~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~ 136 (285)
.+...+..|+++++. .++.|+.+.+..|-.-.
T Consensus 82 as~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 82 CSRDFASEVSNVLNK-GHPKVCEKLKALMVEWT 113 (140)
T ss_dssp SSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 777888889998875 67899999887776543
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.67 E-value=2.5 Score=38.39 Aligned_cols=193 Identities=13% Similarity=0.154 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHH
Q psy355 21 GAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ 100 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q 100 (285)
-+++-+.+.-..... +++++..|..+.+++=..|. . +. -.-++.++.+-..++.+||...+..|+.++....+.
T Consensus 24 ~~~v~~lln~A~~~~--~~~Kl~~L~q~~EL~l~~dp-s-Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el- 97 (386)
T 3o2t_A 24 SERVVDLLNQAALIT--NDSKITVLKQVQELIINKDP-T-LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIEL- 97 (386)
T ss_dssp HHHHHHHHHHHHHCC--STHHHHHHHHHHHHHHTTCG-G-GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG-
T ss_pred HHHHHHHHHhhhccC--hHHHHHHHHHHHHHHhccCH-H-HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH-
Confidence 344444554444422 36899999999997543332 1 11 245788899888899999999999999998644332
Q ss_pred HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH---------------HHHHHhhccCcHH
Q psy355 101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF---------------SVLLRCIQSKKEK 165 (285)
Q Consensus 101 ~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi---------------~~L~~~L~~~~~~ 165 (285)
+ ..+++.|..||. +.++.|.+.++.+.+++ ++..++.++..++. ..++..+.+.+.-
T Consensus 98 --~--~~~l~~L~~LL~-d~d~~V~K~~I~~~tsl---Ypl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~G 169 (386)
T 3o2t_A 98 --L--LKLIANLNMLLR-DENVNVVKKAILTMTQL---YKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDG 169 (386)
T ss_dssp --H--HHHHHHHHHHHT-CSSHHHHHHHHHHHHHH---HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHH
T ss_pred --H--HHHHHHHHHHHc-CCCHHHHHHHHHHHHHH---HHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 2 336788888888 47899999999999887 45556555554441 2445567778888
Q ss_pred HHHHHHHHHHHHhc--C----Cch---------------------HHHHHH--HCCcHHHHHHhcccCCCCCccHHHHHH
Q psy355 166 LVIKSCFLIACLCT--D----NNQ---------------------VKQVLL--SMGMVEQMCVLIDIEDALDTEMNEHLL 216 (285)
Q Consensus 166 v~~ka~~~l~~L~~--~----~~~---------------------~~~~l~--~~g~v~~L~~lL~~~~~~d~~~~e~al 216 (285)
+|..|.-++..++. . ++. ....+. -.+.+..|+..|..+ ..++.....++
T Consensus 170 Vrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~-~iss~~l~a~l 248 (386)
T 3o2t_A 170 IRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHP-AISSINLTTAL 248 (386)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHccc-ccccHHHHHHH
Confidence 88888866666541 1 100 011222 235677788888764 11334555677
Q ss_pred HHHHHHHhcChH
Q psy355 217 SALASLIKDSTE 228 (285)
Q Consensus 217 ~aL~~l~~~~~~ 228 (285)
.+|..|++.-|+
T Consensus 249 nsLa~Iak~RP~ 260 (386)
T 3o2t_A 249 GSLANIARQRPM 260 (386)
T ss_dssp HHHHHHHHHSGG
T ss_pred HHHHHHHHhcHH
Confidence 777777777764
No 121
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=94.35 E-value=0.42 Score=37.48 Aligned_cols=108 Identities=11% Similarity=0.072 Sum_probs=73.3
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCH-HHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP-FSQN 101 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~-~~q~ 101 (285)
+.+.++..+++....++-. ..-++.+.+.. .+.+.+ ++..|.+-|+|++|.++..|+.+|-.+++|.. .++.
T Consensus 12 ~~~~IekATs~~l~~~dw~-~ileicD~I~~~~~~pk~-----a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWA-SINGFCEQLNEDFEGPPL-----ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHH-HHHHHHHHGGGSSSHHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHH-HHHHHHHHHHCCCCcHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4455566666664333322 23333344332 223333 35677777889999999999999999999754 4677
Q ss_pred HHHhcCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhh
Q psy355 102 FIIQTDFLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVR 137 (285)
Q Consensus 102 ~v~~~g~l~~L~~LL~~-----~~~~~v~~~a~~ALs~l~r 137 (285)
.|.....+..|++++.. .++..|+.+.+..|-.-..
T Consensus 86 eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 86 EVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 78888899999999963 2568899998877776544
No 122
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=94.34 E-value=0.58 Score=43.02 Aligned_cols=184 Identities=10% Similarity=0.072 Sum_probs=103.4
Q ss_pred CCHHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hhcCCCH
Q psy355 1 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDP 79 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~ 79 (285)
||+++..=|..++..+..+-.....-+++++..=. .+..+++-|+.++-....+.. +..++. .+.+..+
T Consensus 207 ls~~el~~l~~~l~~~~~~~~~l~~~~~kil~~WP----~~FPaLDLLRl~v~~p~~~~~------l~~li~~~l~~~~~ 276 (425)
T 3pst_A 207 FDDEILAQIGGALHDIDESWELLLSFANTIRSNWE----IKTPAYDIVRLIVKKLPYSSD------IKDYIEEGLGNKNI 276 (425)
T ss_dssp CCHHHHHHHHHHHTSGGGSHHHHHHHHHHHHHHCS----CCHHHHHHHHHHGGGCSCGGG------GHHHHHHHTTCSSH
T ss_pred CCHHHHHHHHHHhccccccHHHHHHHHHHHHHhCC----cccHHHHHHHHHHcCCchHHH------HHHHHHHhcCCCCh
Confidence 45666666666665443222222222333333211 478899999998877664433 222332 3446789
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC-------CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH
Q psy355 80 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-------SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF 152 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~-------~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi 152 (285)
..+.-++++++|+-++...-++.+........++.++... .+..++..+...+=|++.-.... -.+....
T Consensus 277 an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~---~~~~el~ 353 (425)
T 3pst_A 277 TLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKG---NSDLELL 353 (425)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHS---CSCTTHH
T ss_pred hHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcc---cchHHHH
Confidence 9999999999999987653454443333456666665321 13455655555554544321100 0012234
Q ss_pred HHHHHhhc---------cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHH
Q psy355 153 SVLLRCIQ---------SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM 197 (285)
Q Consensus 153 ~~L~~~L~---------~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L 197 (285)
+.+..++. ..+....-+++-++++|+...+..++....-.++...
T Consensus 354 ~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a~~~~~~~~~ 407 (425)
T 3pst_A 354 PIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLANI 407 (425)
T ss_dssp HHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcCHHHHHHH
Confidence 45666665 2477888889999999987666666554443344443
No 123
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.32 E-value=0.19 Score=42.35 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhccC-----------cHHHHHHHHHHHHHHhcCCchHHHHHHHCCc
Q psy355 126 VKSLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSK-----------KEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 193 (285)
Q Consensus 126 ~~a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~-----------~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~ 193 (285)
.+.+..|.-..|.+|. =.+.| ..+|+..|+..|..- +...+..+..++..++.........+-..++
T Consensus 19 ~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~ 97 (233)
T 2f31_A 19 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEG 97 (233)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSH
T ss_pred HHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHH
Confidence 3445566555565544 46678 589999888887631 4677888999999998766555555556788
Q ss_pred HHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 194 v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+..++..|.++ .+.++..++..|..++..+
T Consensus 98 i~~l~~~L~s~---~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 98 ILLLVRAMDPA---VPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp HHHHHTTCCTT---SHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhCCC---CchHHHHHHHHHHHHHhCC
Confidence 99999999988 8999999988887776543
No 124
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.29 E-value=1.2 Score=45.63 Aligned_cols=139 Identities=9% Similarity=0.059 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChHhH-HHHHhcCcHHHHHHh
Q psy355 81 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEECL-KEFIKRDGFSVLLRC 158 (285)
Q Consensus 81 vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~~~-~~f~~~~gi~~L~~~ 158 (285)
.+..+..+|-.++...+.. ++. -+++.|-+.+.. ..+-..+..|+||+++++.+..... ..++ ...++.|..+
T Consensus 429 ~~~~~~~~L~~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l 503 (1049)
T 3m1i_C 429 LYKSEREVLVYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDL 503 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHH
Confidence 4556777777777544421 111 123444444542 2456788999999999986543331 1222 1234444443
Q ss_pred hc-----cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355 159 IQ-----SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA 229 (285)
Q Consensus 159 L~-----~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~ 229 (285)
.. .+.+.++..++|+++..+.--....+.+. .+++.++..|..+ ++.++..|..++.+++..++..
T Consensus 504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~---~~~V~~~A~~al~~l~~~~~~~ 574 (1049)
T 3m1i_C 504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHET---HEGVQDMACDTFIKIVQKCKYH 574 (1049)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSS---CHHHHHHHHHHHHHHHHHHTHH
T ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 32 13456666799999976532111112222 3566777778777 8999999999999999877644
No 125
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=94.24 E-value=0.34 Score=38.29 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=72.3
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhc-CCCHHHHHHHHHHHHHHhhCC-HHH
Q psy355 23 ELEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLE-GSDPELRWRAAETVADIVQNN-PFS 99 (285)
Q Consensus 23 ~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn-~~~ 99 (285)
.+.+.++..+++....++-...+ ++.+++.. .+.+.+ ++..|.+-|+ ++++.++..|+.+|-.++.|. +.+
T Consensus 16 ~~~~~IekATs~~l~~~Dw~~~l-eicD~I~~~~~~~k~-----a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~f 89 (157)
T 1elk_A 16 PVGQRIEKATDGSLQSEDWALNM-EICDIINETEEGPKD-----ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRF 89 (157)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHH-HHHHHHHHSSSHHHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHcCCCCCCcCHHHHH-HHHHHHhCCCccHHH-----HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 45667777777764333322222 33333322 233333 3556777787 589999999999999999996 778
Q ss_pred HHHHHhcCcHHH-HHHhhcc--CCCHHHHHHHHHHHHHH
Q psy355 100 QNFIIQTDFLNL-LLTSIEH--DSNTTVQVKSLYAVSCL 135 (285)
Q Consensus 100 q~~v~~~g~l~~-L~~LL~~--~~~~~v~~~a~~ALs~l 135 (285)
+..+.+...+.. |++++.. .++..|+.+++..|-.-
T Consensus 90 h~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 90 HVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 888888889998 8898853 24568998888666554
No 126
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.23 E-value=2.8 Score=37.23 Aligned_cols=151 Identities=13% Similarity=0.203 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC---cHHHHHHh
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTD---FLNLLLTS 115 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g---~l~~L~~L 115 (285)
+.-..+-.-|.+++..-..|.-+...+-+..+..+.+.++-+|-.-|..++-.+-+.++..-..++..+ .+...-+|
T Consensus 138 diAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~L 217 (341)
T 1upk_A 138 EIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKL 217 (341)
T ss_dssp TTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455555666665555566666777788888999999999999999999999998887666666654 56677788
Q ss_pred hccCCCHHHHHHHHHHHHHHhhC--ChHhHHHHHhc-CcHHHHHHhhccCcHHHHHHHHHHHHHHhcC---CchHHHHHH
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRD--NEECLKEFIKR-DGFSVLLRCIQSKKEKLVIKSCFLIACLCTD---NNQVKQVLL 189 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~--~~~~~~~f~~~-~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~---~~~~~~~l~ 189 (285)
|.+ ++-.+|+.++--||.+.-+ |......++.. .-+..++.+|++++..+|-+|-..+.-++.+ .+.+...++
T Consensus 218 l~S-~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~ 296 (341)
T 1upk_A 218 LHS-ENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILL 296 (341)
T ss_dssp TTC-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred hcC-CcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHH
Confidence 887 6789999999999999865 55555566643 3578999999999999999999888877665 234444444
Q ss_pred H
Q psy355 190 S 190 (285)
Q Consensus 190 ~ 190 (285)
.
T Consensus 297 ~ 297 (341)
T 1upk_A 297 K 297 (341)
T ss_dssp H
T ss_pred H
Confidence 3
No 127
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.16 Score=43.45 Aligned_cols=137 Identities=10% Similarity=0.101 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc
Q psy355 40 ICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 118 (285)
Q Consensus 40 ~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~ 118 (285)
.+..++|-++-++-....+..+. .++. .+.++++..+.-++++++|+-++....++.+........++..+.+
T Consensus 70 ~~fP~lDllRl~~~~~~~~~~l~------~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPYSSDIK------DYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CCHHHHHHHHHHGGGCSCGGGGH------HHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred ccchHHHHHHHHHcCCchHHHHH------HHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 57788898888876655443322 2332 3446788999999999999998766345555544344555554422
Q ss_pred C-------CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc---------CcHHHHHHHHHHHHHHhcCCc
Q psy355 119 D-------SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS---------KKEKLVIKSCFLIACLCTDNN 182 (285)
Q Consensus 119 ~-------~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~---------~~~~v~~ka~~~l~~L~~~~~ 182 (285)
. .+..+|..+...+-|++....... .+......++.++.. .+....-++.-++++|+..++
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~---~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSC---SCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 1 245677777666666654211100 012234455555542 366777888888998887655
Q ss_pred hHH
Q psy355 183 QVK 185 (285)
Q Consensus 183 ~~~ 185 (285)
..+
T Consensus 221 ~~~ 223 (253)
T 3gae_A 221 TLR 223 (253)
T ss_dssp GGG
T ss_pred HHH
Confidence 444
No 128
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.14 E-value=0.034 Score=47.56 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=13.1
Q ss_pred HHHHhhhcCCCHHHHHHHHHH
Q psy355 68 PVLQPLLEGSDPELRWRAAET 88 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~ 88 (285)
+.|..+++.+++.||..++..
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 455556666666776666653
No 129
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.99 E-value=0.23 Score=42.83 Aligned_cols=101 Identities=9% Similarity=0.092 Sum_probs=78.3
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEF 146 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f 146 (285)
+|.|+.=+..+...||..+-.++-.++.--|. ..+++.+++-+.+ ++.-+|..++..|++++..+-..
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ks-KN~R~R~e~l~~l~~li~~~G~~---- 201 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKS-KNARQRSECLLVIEYYITNAGIS---- 201 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCCC----
Confidence 57888877888899999999888777642221 2367778888876 78899999999999987643222
Q ss_pred HhcCcH---HHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355 147 IKRDGF---SVLLRCIQSKKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 147 ~~~~gi---~~L~~~L~~~~~~v~~ka~~~l~~L~~~ 180 (285)
...++ +.+..++.+.|..||..|..++..+...
T Consensus 202 -~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 202 -PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp -GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred -ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 23478 9999999999999999999988866543
No 130
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=93.79 E-value=1 Score=39.49 Aligned_cols=136 Identities=12% Similarity=0.075 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC--cHH----
Q psy355 81 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE-HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD--GFS---- 153 (285)
Q Consensus 81 vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~-~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~--gi~---- 153 (285)
--..|+..|-.++.. -+..-.+++.. .+.|-+++- ...++.++..|...|++..|+||++...+...- -+.
T Consensus 44 ~le~aLD~L~ElSHD-i~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 44 RLEDSFDRIMEFAHD-YKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHGGGTTS-HHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhh-HHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 345666666666643 33344444322 333434332 225678999999999999999999998776531 122
Q ss_pred HHHHhhcc---CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355 154 VLLRCIQS---KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 154 ~L~~~L~~---~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~ 224 (285)
-|..++.. ....++++-..+|..|+.....+. ...+..|..++... ..+++++.+++..+..+..
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~-~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERN-NKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccC-CCCHHHHHHHHHHHHHHcc
Confidence 22232222 244666777788888877653332 33556666666543 3378999999998887774
No 131
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.61 E-value=2.5 Score=35.66 Aligned_cols=131 Identities=7% Similarity=-0.016 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hhcCCCHHHHHHHHHHHHHHhh-CCHHHHHHHHhcCcHHHHHHh
Q psy355 38 KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVADIVQ-NNPFSQNFIIQTDFLNLLLTS 115 (285)
Q Consensus 38 ~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~~vr~~A~~~lg~~a~-nn~~~q~~v~~~g~l~~L~~L 115 (285)
++.+.-|...|..+ . .... .++.+.. +-..++-.||..++.+++.++. -+|. ..++.+...
T Consensus 85 deVR~~Av~lLg~~-~--~~~~------~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W 147 (240)
T 3l9t_A 85 YQVRMYAVFLFGYL-S--KDKE------ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEW 147 (240)
T ss_dssp HHHHHHHHHHHHHT-T--TSHH------HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHH
T ss_pred hHHHHHHHHHHHhc-c--CcHH------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHH
Confidence 46677777666655 2 1111 2455555 4446788999999999999885 4443 167778888
Q ss_pred hccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh--cCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHC
Q psy355 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK--RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 191 (285)
Q Consensus 116 L~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~--~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~ 191 (285)
..+ ++..||+.|+-.+-.-+.. + .+.. .-.++.|..+..+++.-||+..+|.|..+...+|+....+++.
T Consensus 148 ~~d-~n~~VRR~Ase~~rpW~~~-~----~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 148 LKS-SNLHTRRAATEGLRIWTNR-P----YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp HHC-SSHHHHHHHHHHTCSGGGS-T----TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred hcC-CCHHHHHHHHHhhHHHhcc-c----hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 875 7899999887655322221 1 1111 1145666666667789999999999999999999877776653
No 132
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.59 E-value=0.045 Score=46.79 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=12.9
Q ss_pred HHHHhhhcCCCHHHHHHHHHH
Q psy355 68 PVLQPLLEGSDPELRWRAAET 88 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~ 88 (285)
..+..+++++++.||..|+..
T Consensus 77 ~~l~~L~~D~~~~VR~~aA~~ 97 (244)
T 1lrv_A 77 EALTPLIRDSDEVVRRAVAYR 97 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTT
T ss_pred HHHHHHccCcCHHHHHHHHHH
Confidence 344556666677777666654
No 133
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.61 Score=42.02 Aligned_cols=183 Identities=10% Similarity=0.065 Sum_probs=100.5
Q ss_pred CCHHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHh-hhcCCCH
Q psy355 1 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP-LLEGSDP 79 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~ 79 (285)
||+|+..=+..++..+..+......-+.+++.. .. .+..+++-|+.++-....+.. +..++. .+.+..+
T Consensus 144 ls~~el~~l~~~l~~~~~~~~~l~~~~~~i~~~--Wp--~~FP~LDLLRl~v~~~~~~~~------l~~li~~~~~~~~~ 213 (362)
T 3l3f_X 144 FDDEILAQIGGALHDIDESWELLLSFANTIRSN--WE--IKTPAYDIVRLIVKKLPYSSD------IKDYIEEGLGNKNI 213 (362)
T ss_dssp SCHHHHHHHHHHHTCTTTCHHHHHHHHHHHHHH--CS--CCHHHHHHHHHHGGGCSCGGG------GHHHHHHHTTCSSH
T ss_pred CCHHHHHHHHHHHhcccccHHHHHHHHHHHHhh--CC--ccchHHHHHHHHhcCCChHHH------HHHHHHHhcCCCCh
Confidence 456666656666555433322222223333332 21 378899999988876654432 222332 3446789
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC-------CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcH
Q psy355 80 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD-------SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF 152 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~-------~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi 152 (285)
..+.-++++++|+-++...-++.+........++..+... .+..++..+...+=|++.-.... -.+....
T Consensus 214 ~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~---~~~~el~ 290 (362)
T 3l3f_X 214 TLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKG---NSDLELL 290 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHT---CSCTTHH
T ss_pred hHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcc---cchHHHH
Confidence 9999999999999987653444443222234455544211 13456666655555554321110 0012234
Q ss_pred HHHHHhhc---------cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHH
Q psy355 153 SVLLRCIQ---------SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 196 (285)
Q Consensus 153 ~~L~~~L~---------~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~ 196 (285)
+.+..++. ..+....-+++-++++|+..++..++....-.++..
T Consensus 291 ~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~~a~~~~~~~~ 343 (362)
T 3l3f_X 291 PIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLAN 343 (362)
T ss_dssp HHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHTGGGCHHHHH
T ss_pred HHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcCHHHHHH
Confidence 45666665 247788888999999998766655544433334443
No 134
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.28 E-value=0.44 Score=43.32 Aligned_cols=111 Identities=10% Similarity=0.089 Sum_probs=78.1
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHhhCChHh-HHHHHhcCcHHHHHHhhcc-----------CcHHHHHHHHHHHHHHhc
Q psy355 112 LLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-LKEFIKRDGFSVLLRCIQS-----------KKEKLVIKSCFLIACLCT 179 (285)
Q Consensus 112 L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-~~~f~~~~gi~~L~~~L~~-----------~~~~v~~ka~~~l~~L~~ 179 (285)
++..|.+.....--.+.+..|.--.|.+|.. .+.|+ .+|+..|+..|.. .+...+..+..++..+..
T Consensus 71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN 149 (383)
T 3eg5_B 71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 149 (383)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc
Confidence 3444444332222234566776666666554 57787 8899999998852 245788889999999987
Q ss_pred CCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 180 DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 180 ~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
........+-..+++..|+..|.++ .+.++..++..|..++...
T Consensus 150 ~~~G~~~vl~~~~~i~~l~~~L~s~---~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 150 NKFGIKTMLETEEGILLLVRAMDPA---VPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp SHHHHHHHHTCSSHHHHHHHTCCTT---SHHHHHHHHHHHHHHHTCC
T ss_pred chhhHHHHHcChHHHHHHHHHhCCC---chHHHHHHHHHHHHHHhCc
Confidence 6555555555668899999999988 8889998988887777544
No 135
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.01 E-value=0.066 Score=51.08 Aligned_cols=205 Identities=12% Similarity=0.092 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhccCC----CH----HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHh
Q psy355 22 AELEKIIKTLKENQD----QK----DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIV 93 (285)
Q Consensus 22 ~~mk~~l~~l~~~~~----~~----~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a 93 (285)
+..-+.+.+|.-.-. +| -.|+.+.+.|.-+ -..+.. ...+..++..+..+.-++|..++-.|..+
T Consensus 218 DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL- 290 (800)
T 3oc3_A 218 KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL- 290 (800)
T ss_dssp THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH-
Confidence 445555555543331 11 3466666666655 332222 34566666666888999999999999987
Q ss_pred hCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhcc-Cc-HHHHHHHH
Q psy355 94 QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS-KK-EKLVIKSC 171 (285)
Q Consensus 94 ~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~-~~-~~v~~ka~ 171 (285)
.+...+ =.+++|.++.-|.. .++.||.-|+.+|..++ .+.....+ +..+..+|.+ +| ..-.....
T Consensus 291 --~DLL~~---Ld~Vv~aVL~GL~D-~DDDVRAVAAetLiPIA--~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVM 357 (800)
T 3oc3_A 291 --KEFVED---KDGLCRKLVSLLSS-PDEDIKLLSAELLCHFP--ITDSLDLV-----LEKCWKNIESEELISVSKTSNL 357 (800)
T ss_dssp --GGGCCC---HHHHHHHHHHHTTC-SSHHHHHHHHHHHTTSC--CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHH
T ss_pred --HHHHHH---HHHHHHHHHhhcCC-cccHHHHHHHHHhhhhc--chhhHHHH-----HHHHHHHhhhhcccchhhHHHH
Confidence 111111 14577888888885 68899999999999998 34333333 3455566554 22 33334556
Q ss_pred HHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcccHHHHHHHHHHHc
Q psy355 172 FLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKH 251 (285)
Q Consensus 172 ~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~l 251 (285)
.+++.|++..+... .....||.|-.+|.++ -+.+|..++.+|..++ .. ..+....+++
T Consensus 358 dLLAkL~s~p~~a~---~dp~LVPRL~PFLRHt---ITSVR~AVL~TL~tfL--~~--------------~~LRLIFQNI 415 (800)
T 3oc3_A 358 SLLTKIYRENPELS---IPPERLKDIFPCFTSP---VPEVRTSILNMVKNLS--EE--------------SIDFLVAEVV 415 (800)
T ss_dssp HHHHHHHHHCTTCC---CCSGGGGGTGGGGTCS---SHHHHHHHHHHTTTCC--CH--------------HHHHHHHHHH
T ss_pred HHHHHHHcCCcccc---cChHHHHHHHhhhcCC---cHHHHHHHHHHHHHHH--hh--------------hHHHHHHHHH
Confidence 67777776543211 1237889999999999 9999999999998877 21 1222222232
Q ss_pred cChHhhHHHHHHHHHHHH
Q psy355 252 AGNEVYHKELEHVNSVLT 269 (285)
Q Consensus 252 ~~~~e~~~~~~~~~~il~ 269 (285)
- -++++++.+.+.+.+.
T Consensus 416 L-LE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 416 L-IEEKDEIREMAIKLLK 432 (800)
T ss_dssp H-HCSCHHHHHHHHHHHH
T ss_pred H-hCCcHHHHHHHHHHHH
Confidence 2 3456677777766664
No 136
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=92.62 E-value=1.1 Score=45.70 Aligned_cols=97 Identities=11% Similarity=0.066 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhhcCcch-HHHH-HHcCC----HHHHHhhhc-----CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcC
Q psy355 39 DICIGALDNLSDYVCSIDY-ANDF-LKMGG----LPVLQPLLE-----GSDPELRWRAAETVADIVQNNPFSQNFIIQTD 107 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dn-a~~~-~~~Gg----~~~Lv~lL~-----s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g 107 (285)
.+++.++-.|..+.|.+.+ +..+ -.... ++.++.+++ .++|.||..++++||..+.--.. ...
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~~ 531 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ESA 531 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CCT
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cch
Confidence 5677777777777666542 2111 00112 344455555 68899999999999997752111 124
Q ss_pred cHHHHHHhhcc-----CCCHHHHHHHHHHHHHHhhCChH
Q psy355 108 FLNLLLTSIEH-----DSNTTVQVKSLYAVSCLVRDNEE 141 (285)
Q Consensus 108 ~l~~L~~LL~~-----~~~~~v~~~a~~ALs~l~r~~~~ 141 (285)
.+|+++..+-+ ++++.|+..|++++.++|+....
T Consensus 532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 56666665543 35678999999999999987665
No 137
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=91.54 E-value=6.6 Score=34.30 Aligned_cols=203 Identities=13% Similarity=0.157 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCC
Q psy355 21 GAELEKIIKTLKENQDQ----KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN 96 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~----~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn 96 (285)
.+.|.+-+.-++....+ .++-+.+++.+...+++... ..+ ....+..+.+++ +=.++.+.+++.++--++- +
T Consensus 57 ~~~i~~KL~EfN~~~~~~~~Ls~~el~~L~~l~~~l~~~s~-~~~-~~~~l~~l~kil-~WP~~~~fPvLDLlRl~~l-~ 132 (304)
T 3ebb_A 57 PTQILGKLKELNGTAPEEKKLTEDDLILLEKILSLICNSSS-EKP-TVQQLQILWKAI-NCPEDIVFPALDILRLSIK-H 132 (304)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCCHHHHHHHHHHHHHHHTTCS-SCC-CHHHHHHHHHHH-TSCTTTCHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHhccCC-Ccc-chHHHHHHHHHH-cCCHHhHHHHHHHHHHHHc-C
Confidence 44555555555554422 13444455555444332110 000 111356777776 5556788899999887775 6
Q ss_pred HHHHHHHHhcCcHH----HHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhc--CcHHHHHHhhccCcHHHHHHH
Q psy355 97 PFSQNFIIQTDFLN----LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKR--DGFSVLLRCIQSKKEKLVIKS 170 (285)
Q Consensus 97 ~~~q~~v~~~g~l~----~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~--~gi~~L~~~L~~~~~~v~~ka 170 (285)
|.....+.+.+.-. .++..+..+..+..+--++..++|+..+ +...+.+... ..++.+..++.+++..+|..+
T Consensus 133 p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ 211 (304)
T 3ebb_A 133 PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIAL 211 (304)
T ss_dssp HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHH
T ss_pred ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Confidence 77666665543323 3344454444566788899999999875 4444444432 234455555556789999999
Q ss_pred HHHHHHHhcC---CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhc
Q psy355 171 CFLIACLCTD---NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLC 233 (285)
Q Consensus 171 ~~~l~~L~~~---~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~ 233 (285)
+.++.|++.. .+.. +... .++..+..++... .|.+..-.++-||++++...++....+
T Consensus 212 ATl~~NlAv~~~~~~~~-~~~~--~ll~~l~~il~~~--~d~EalyR~LvALGtL~~~~~~~~~la 272 (304)
T 3ebb_A 212 ATLALNYSVCFHKDHNI-EGKA--QCLSLISTILEVV--QDLEATFRLLVALGTLISDDSNAVQLA 272 (304)
T ss_dssp HHHHHHHHHHHHHSCCH-HHHH--HHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCc-hHHH--HHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHhCChhHHHHH
Confidence 9999999753 1111 1111 1444555555543 378888999999999998776544444
No 138
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.44 E-value=1.9 Score=40.17 Aligned_cols=126 Identities=10% Similarity=0.102 Sum_probs=83.9
Q ss_pred HHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCc
Q psy355 30 TLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDF 108 (285)
Q Consensus 30 ~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~ 108 (285)
+|.....+...+.-|-+-+..+... .+.++. ++..++.|...++..||..|.+.|..+|.+ .. + ..+
T Consensus 34 Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~----i--~ki 101 (507)
T 3u0r_A 34 ILDGVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-EN----L--PRV 101 (507)
T ss_dssp HHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TC----H--HHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hh----h--hhH
Confidence 3333334556677777777666544 343333 578889999999999999999999999987 22 2 235
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHH
Q psy355 109 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC 176 (285)
Q Consensus 109 l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~ 176 (285)
...|.+||.++ ++......-++|-.+.+-+|.+. +..+...+.+++..+|.++.-+|+.
T Consensus 102 aDvL~QlLqtd-d~~E~~~V~~sL~sllk~Dpk~t--------l~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 102 ADILTQLLQTD-DSAEFNLVNNALLSIFKMDAKGT--------LGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHHHHHHTTCC-CHHHHHHHHHHHHHHHHHCHHHH--------HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-chHHHHHHHHHHHHHHhcChHHH--------HHHHHHHHcccchHHHHHHHHHHHH
Confidence 77899999974 55666666678888877665532 2222333333567777777766653
No 139
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=91.01 E-value=0.63 Score=47.95 Aligned_cols=97 Identities=11% Similarity=0.137 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHHhhCCH-HH-HHHHHhcCcHHHHHHhhccCC----CHHHHHHHHHHHHHHhh---CChHhHHHHH
Q psy355 77 SDPELRWRAAETVADIVQNNP-FS-QNFIIQTDFLNLLLTSIEHDS----NTTVQVKSLYAVSCLVR---DNEECLKEFI 147 (285)
Q Consensus 77 ~~~~vr~~A~~~lg~~a~nn~-~~-q~~v~~~g~l~~L~~LL~~~~----~~~v~~~a~~ALs~l~r---~~~~~~~~f~ 147 (285)
.+......++|++|.++..-. .. ...+. .+++.|+.|..+.. ..-++...+|.+|...+ .++. |+
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~----~L 564 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK----FL 564 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH----HH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH----HH
Confidence 468899999999999985422 21 22232 36777888876532 12355556788888655 2333 22
Q ss_pred hcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC
Q psy355 148 KRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 180 (285)
Q Consensus 148 ~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~ 180 (285)
...+..|++.+..+++.+|.-||.++..+|..
T Consensus 565 -~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 565 -KTVVNKLFEFMHETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp -HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 23456777888888999999999999999865
No 140
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.53 E-value=1.4 Score=39.98 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=70.1
Q ss_pred HHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhcc-----------CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHH
Q psy355 128 SLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQS-----------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 195 (285)
Q Consensus 128 a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~-----------~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~ 195 (285)
.+..|.-..|.+|. =.+.|. .+|+..|+..|.. .+...+..+..+|..++.........+-..+++.
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~ 103 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL 103 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHH
T ss_pred HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHH
Confidence 45555555565543 366785 7899888888752 1567888999999999887666666666678899
Q ss_pred HHHHhcccCCCCCccHHHHHHHHHHHHHhcC
Q psy355 196 QMCVLIDIEDALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 196 ~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~ 226 (285)
.++..|.++ .+.++..++..|..++-.+
T Consensus 104 ~l~~sL~s~---~~~~r~~vleLL~alc~~~ 131 (386)
T 2bnx_A 104 LLVRAMDPA---VPNMMIDAAKLLSALCILP 131 (386)
T ss_dssp HHHHTCCTT---SHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCC---CchHHHHHHHHHHHHHcCC
Confidence 999999888 8888888888787766543
No 141
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=90.01 E-value=1.9 Score=33.20 Aligned_cols=90 Identities=10% Similarity=0.176 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCC
Q psy355 127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIED 205 (285)
Q Consensus 127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~ 205 (285)
...-.|+.+++..+.+.+ ..+..|.+-|.++++.++..|..++-.++.+ ++.+...+.+..++..|+.+++..
T Consensus 24 ~~ileicD~I~~~~~~~k-----~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~- 97 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPK-----DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG- 97 (140)
T ss_dssp HHHHHHHHHHTTSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHCCCcCHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC-
Confidence 345556677776554322 2345667778888999999998888877765 566777777778888888988777
Q ss_pred CCCccHHHHHHHHHHHHHh
Q psy355 206 ALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 206 ~~d~~~~e~al~aL~~l~~ 224 (285)
++.++++++..+..-..
T Consensus 98 --~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 98 --HPKVCEKLKALMVEWTD 114 (140)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHH
Confidence 89999999999887664
No 142
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=90.00 E-value=10 Score=39.38 Aligned_cols=107 Identities=7% Similarity=0.071 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhh-h-cCCCHHHHHHHHHHHHHHhhC----
Q psy355 22 AELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL-L-EGSDPELRWRAAETVADIVQN---- 95 (285)
Q Consensus 22 ~~mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~l-L-~s~~~~vr~~A~~~lg~~a~n---- 95 (285)
..+.+++..+-++..+.+.+..|-..|..+-.+.+ ++..+... . .+.++.+|..|+.++-+..+.
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~ 81 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG 81 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 34666776666665555668788777776644322 45555543 3 467899999999999998754
Q ss_pred -CHHHHHHHHhcCcHHHHHHhhccC--CCHHHHHHHHHHHHHHhhC
Q psy355 96 -NPFSQNFIIQTDFLNLLLTSIEHD--SNTTVQVKSLYAVSCLVRD 138 (285)
Q Consensus 96 -n~~~q~~v~~~g~l~~L~~LL~~~--~~~~v~~~a~~ALs~l~r~ 138 (285)
.+. +...++..++..+.+.-... .+..+|.+.+.+|+.|++.
T Consensus 82 l~~e-~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~ 126 (1204)
T 3a6p_A 82 MSRL-EKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKR 126 (1204)
T ss_dssp SCHH-HHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH
Confidence 333 44445555555554432211 3578999999999998764
No 143
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=89.79 E-value=5 Score=41.32 Aligned_cols=113 Identities=8% Similarity=0.094 Sum_probs=72.5
Q ss_pred cHHHHHHhhcc-CCCHHHHHHHHHHHHHHhhCChH-hHHHHHhcCcHHHHHHhhccC---c--HHHHHHHHHHHHHHhc-
Q psy355 108 FLNLLLTSIEH-DSNTTVQVKSLYAVSCLVRDNEE-CLKEFIKRDGFSVLLRCIQSK---K--EKLVIKSCFLIACLCT- 179 (285)
Q Consensus 108 ~l~~L~~LL~~-~~~~~v~~~a~~ALs~l~r~~~~-~~~~f~~~~gi~~L~~~L~~~---~--~~v~~ka~~~l~~L~~- 179 (285)
.++.|-+.++. ..+-.....++||+++|+..-.+ ..+.|+ -..++.|+.+...+ + ..++...+|+++....
T Consensus 478 ~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~w 556 (1073)
T 3gjx_A 478 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRF 556 (1073)
T ss_dssp HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHH
Confidence 44555555553 23467889999999999854332 233444 24566777666543 3 3455556688876543
Q ss_pred --CCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH
Q psy355 180 --DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA 229 (285)
Q Consensus 180 --~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~ 229 (285)
.++.... .++..|...+..+ ++.+++.|..|+..|++.|+..
T Consensus 557 l~~h~~~L~-----~vl~~L~~~m~~~---~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 557 LRAHWKFLK-----TVVNKLFEFMHET---HDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHCHHHHH-----HHHHHHHHHTTCC---STTHHHHHHHHHHHHHHHTGGG
T ss_pred HHhCHHHHH-----HHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 2333222 3455666767766 8999999999999999999754
No 144
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=87.38 E-value=8.6 Score=29.76 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhc-----C-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHH
Q psy355 39 DICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE-----G-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLL 112 (285)
Q Consensus 39 ~~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~-----s-~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L 112 (285)
-.++.-|......+...+....|.+.|.+..+-.-|. | |+..||...+.+|.++= -.++.+.+.|....+
T Consensus 35 ~~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv 110 (145)
T 2xpp_A 35 TGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIV 110 (145)
T ss_dssp CHHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHH
T ss_pred HHHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcch
Confidence 4678888888888888899999999999988877666 2 77899999999999873 236678888877777
Q ss_pred HHhhccC-CCHHHHHHHHHHHHHH
Q psy355 113 LTSIEHD-SNTTVQVKSLYAVSCL 135 (285)
Q Consensus 113 ~~LL~~~-~~~~v~~~a~~ALs~l 135 (285)
.-+-++. ..+..|+.|-.-+..-
T Consensus 111 ~~l~k~~~et~~nk~la~~Li~~W 134 (145)
T 2xpp_A 111 YFYSINPKESKEVRASAKALVQKW 134 (145)
T ss_dssp HHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred hhhhcCCccCHHHHHHHHHHHHHH
Confidence 6666542 3457777776555543
No 145
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=84.48 E-value=2.9 Score=33.06 Aligned_cols=91 Identities=11% Similarity=0.174 Sum_probs=65.0
Q ss_pred HHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCC
Q psy355 129 LYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDAL 207 (285)
Q Consensus 129 ~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~ 207 (285)
.-.|+.+++..+...+ ..+..|.+-|++.++.++..|..++-.++.+ ++.+...+.+..++..|+.++... .
T Consensus 36 ~leicD~I~~~~~~~k-----eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~--~ 108 (163)
T 1x5b_A 36 IMDICDKVGSTPNGAK-----DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK--A 108 (163)
T ss_dssp HHHHHHHHHHSSSHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC--C
Confidence 3445555554433222 1334666777888999999999998888776 677777888888999999988752 2
Q ss_pred CccHHHHHHHHHHHHHhcC
Q psy355 208 DTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 208 d~~~~e~al~aL~~l~~~~ 226 (285)
++.++++++..+..-....
T Consensus 109 ~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 109 HPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 7899999999887766443
No 146
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=84.19 E-value=3.8 Score=31.86 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=68.4
Q ss_pred HHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC--
Q psy355 128 SLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE-- 204 (285)
Q Consensus 128 a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~-- 204 (285)
..-.|+.+++..+...+ ..+..|.+-|+++++.++..|..++-.++.+ ++.+...+.+..++..|+.++...
T Consensus 21 ~~leicD~I~~~~~~~k-----~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~ 95 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGPT-----HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYL 95 (148)
T ss_dssp HHHHHHHHHHHSSHHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTT
T ss_pred HHHHHHHHHHcCCccHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccC
Confidence 34455666655443222 2345677778899999999999999988876 777888888889999999998741
Q ss_pred -CCCCccHHHHHHHHHHHHHhcC
Q psy355 205 -DALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 205 -~~~d~~~~e~al~aL~~l~~~~ 226 (285)
...+..++++++..+..-....
T Consensus 96 ~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 96 GSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 1126789999999887766443
No 147
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=83.88 E-value=5.6 Score=33.13 Aligned_cols=93 Identities=10% Similarity=0.218 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCC
Q psy355 127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIED 205 (285)
Q Consensus 127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~ 205 (285)
.....|+.+++..+...+ ..+..|.+-|++.++.++..|..++-.++.+ ++.+...+.+..++..|..+++..
T Consensus 27 ~~ileicD~I~~~~~~~k-----~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~- 100 (226)
T 3zyq_A 27 ESILQICDLIRQGDTQAK-----YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQ- 100 (226)
T ss_dssp HHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccC-
Confidence 345556666665433221 2345677778889999999999999888876 666777777888888888888653
Q ss_pred CCCccHHHHHHHHHHHHHhcC
Q psy355 206 ALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 206 ~~d~~~~e~al~aL~~l~~~~ 226 (285)
.+..++++++..+.......
T Consensus 101 -~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 101 -VEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp -CCHHHHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHHHHh
Confidence 36789999999998876543
No 148
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=83.69 E-value=12 Score=33.11 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhCChHhHHH----------------HHhcCcHHHHHHhhccCcHHHHH
Q psy355 122 TTVQVKSLYAVSCLVRDNEECLKE----------------FIKRDGFSVLLRCIQSKKEKLVI 168 (285)
Q Consensus 122 ~~v~~~a~~ALs~l~r~~~~~~~~----------------f~~~~gi~~L~~~L~~~~~~v~~ 168 (285)
+..|...++.|+++-.-+|...+. +-..||+..+..+|..-+.....
T Consensus 154 ~~~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN~~d~~~e~ 216 (329)
T 3hjl_A 154 EELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRE 216 (329)
T ss_dssp HHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhcCChHHHH
Confidence 456666666666665444443221 22468998888888765554444
No 149
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=83.14 E-value=1.7 Score=41.68 Aligned_cols=141 Identities=11% Similarity=0.097 Sum_probs=94.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHH--HhcCcHHHHHHhhccC---------CCHHHHHHHHHHHHHH
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI--IQTDFLNLLLTSIEHD---------SNTTVQVKSLYAVSCL 135 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v--~~~g~l~~L~~LL~~~---------~~~~v~~~a~~ALs~l 135 (285)
+..|+.-|-++.-++|.-||-+|..+........... ......-.|+-+|.-| .-.-||+.|+.+|+.+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 4456666779999999999999999875432110000 0113344444443321 1236999999999999
Q ss_pred hhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHH
Q psy355 136 VRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL 215 (285)
Q Consensus 136 ~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~a 215 (285)
.+-|+. ...+..++..+..+.-.+|--+...|.++ .+....+ .++++.++..|... |.+++..|
T Consensus 256 -~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~L--d~Vv~aVL~GL~D~---DDDVRAVA 319 (800)
T 3oc3_A 256 -YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVEDK--DGLCRKLVSLLSSP---DEDIKLLS 319 (800)
T ss_dssp -TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCCH--HHHHHHHHHHTTCS---SHHHHHHH
T ss_pred -HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHHH--HHHHHHHHhhcCCc---ccHHHHHH
Confidence 766654 34555555666777889999888888888 1111112 36778888888888 89999999
Q ss_pred HHHHHHHH
Q psy355 216 LSALASLI 223 (285)
Q Consensus 216 l~aL~~l~ 223 (285)
+.+|.-++
T Consensus 320 AetLiPIA 327 (800)
T 3oc3_A 320 AELLCHFP 327 (800)
T ss_dssp HHHHTTSC
T ss_pred HHHhhhhc
Confidence 99998877
No 150
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=82.71 E-value=7.4 Score=30.33 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=68.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhhcC-cchHHHHHHcCCHHHHHhhhcC-CCHHHHHHHHHHHHHHhhCC-HHHH
Q psy355 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCS-IDYANDFLKMGGLPVLQPLLEG-SDPELRWRAAETVADIVQNN-PFSQ 100 (285)
Q Consensus 24 mk~~l~~l~~~~~~~~~~~~al~~L~~lv~~-~dna~~~~~~Gg~~~Lv~lL~s-~~~~vr~~A~~~lg~~a~nn-~~~q 100 (285)
+.+.++..+++.-+.++-...+ ++.+++.. .+.+.+ ++..|.+-|++ +++.++..|+.+|..+++|. +.++
T Consensus 17 ~~~~IekATs~~l~~~Dw~~il-eicD~In~~~~~pke-----A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh 90 (152)
T 3rru_A 17 VGHLIEKATFAGVQTEDWGQFM-HICDIINTTQDGPKD-----AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQ 90 (152)
T ss_dssp HHHHHHHHTCSSCCSCCHHHHH-HHHHHHHHSTTHHHH-----HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHcCCCCCCccHHHHH-HHHHHHhCCCccHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence 4455666666664433322222 23333322 222332 45666666664 68899999999999999974 4456
Q ss_pred HHHHhcCcHHH-HHHhhccC--CCHHHHHHHHHHHHHHhhCC
Q psy355 101 NFIIQTDFLNL-LLTSIEHD--SNTTVQVKSLYAVSCLVRDN 139 (285)
Q Consensus 101 ~~v~~~g~l~~-L~~LL~~~--~~~~v~~~a~~ALs~l~r~~ 139 (285)
..|.....+.- |++++... .+..|+.+++..|-.-....
T Consensus 91 ~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 91 SLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 66766667764 78887642 34579999998888776543
No 151
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=82.31 E-value=5.5 Score=30.98 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC-
Q psy355 127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE- 204 (285)
Q Consensus 127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~- 204 (285)
...-.|+-+++..+..-+ ..+..|.+-|++.++.++..|..++-.++.+ ++.+...+.+..++..|+.++...
T Consensus 30 ~~ileicD~I~~~~~~pk-----~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~ 104 (149)
T 3g2s_A 30 ASINGFCEQLNEDFEGPP-----LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKY 104 (149)
T ss_dssp HHHHHHHHHGGGSSSHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHCCCCcHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccc
Confidence 455566666665543222 2345677778889999999999998888765 667778888888999999998641
Q ss_pred --CCCCccHHHHHHHHHHHHHhcC
Q psy355 205 --DALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 205 --~~~d~~~~e~al~aL~~l~~~~ 226 (285)
+..+..++++++..+..-....
T Consensus 105 ~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 105 LGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1127889999999998877544
No 152
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=82.09 E-value=3.2 Score=33.11 Aligned_cols=95 Identities=9% Similarity=0.127 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccC-
Q psy355 127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIE- 204 (285)
Q Consensus 127 ~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~- 204 (285)
...-.|+.+++..+...+ ..+..|.+-|++.++.++..|..++-.++.+ ++.+...+.+..++..|+.++...
T Consensus 32 ~~ileicD~I~~~~~~~k-----~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~ 106 (171)
T 1juq_A 32 EYIIGFCDQINKELEGPQ-----IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKY 106 (171)
T ss_dssp HHHHHHHHHHHHSTTHHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCCccHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhcccc
Confidence 344566666665543322 2345677778899999999999999988876 567777888889999999998631
Q ss_pred --CCCCccHHHHHHHHHHHHHhcC
Q psy355 205 --DALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 205 --~~~d~~~~e~al~aL~~l~~~~ 226 (285)
...+..++++++..+..-....
T Consensus 107 ~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 107 LGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHc
Confidence 1236789999999998776543
No 153
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=79.76 E-value=1.2 Score=26.18 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=13.1
Q ss_pred CHHhHHHHHHHHHHh
Q psy355 2 NEANRGFLLDALNSM 16 (285)
Q Consensus 2 ~~e~~~~L~~al~~~ 16 (285)
+.+||.||++.|+.+
T Consensus 17 ~~~R~~WLq~~L~~v 31 (39)
T 1bwx_A 17 SMERVEWLRKKLQDV 31 (39)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 468999999999876
No 154
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=77.64 E-value=1.1 Score=25.65 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=12.1
Q ss_pred HHhHHHHHHHHHHh
Q psy355 3 EANRGFLLDALNSM 16 (285)
Q Consensus 3 ~e~~~~L~~al~~~ 16 (285)
.+||.||++.|+.+
T Consensus 18 ~~R~~WLq~~l~~v 31 (34)
T 1et1_A 18 MERVEWLRKKLQDV 31 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 58999999999865
No 155
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=77.44 E-value=6.9 Score=30.14 Aligned_cols=77 Identities=10% Similarity=0.174 Sum_probs=50.5
Q ss_pred cHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHH-HhhcccCcccHHHHHHHHH------HHccChHhhHHHHHHHH
Q psy355 193 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA-QSLCRLEPLNLKFKLNFIK------EKHAGNEVYHKELEHVN 265 (285)
Q Consensus 193 ~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~-~~~~~~~~~~l~~~l~~~~------~~l~~~~e~~~~~~~~~ 265 (285)
+++.|..=|... ++.++-+||..|.+|+..+.+. +..++..- ..|+... ..+.+...++.+.+.|.
T Consensus 50 im~~L~kRL~~k---~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~----~~Ik~l~~F~g~~dp~~G~d~g~~VR~~Ak 122 (140)
T 1vdy_A 50 FSEFILKRLDNK---SPIVKQKALRLIKYAVGKSGSEFRREMQRNS----VAVRNLFHYKGHPDPLKGDALNKAVRETAH 122 (140)
T ss_dssp HHHHHHHHHTSS---SHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT----HHHHTTTTCCCCCCTTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC---CcceeehHHHHHHHHHHhCCHHHHHHHHHhH----HHHHHHHhcCCCCCcccccchhHHHHHHHH
Confidence 455666667776 7889999999999999777543 22222111 1122110 01223457899999999
Q ss_pred HHHHHhcCCCC
Q psy355 266 SVLTEVFEEDS 276 (285)
Q Consensus 266 ~il~~~f~~~~ 276 (285)
.+++..|+++.
T Consensus 123 El~~ll~d~~~ 133 (140)
T 1vdy_A 123 ETISAIFSEEN 133 (140)
T ss_dssp HHHHHHTCCSS
T ss_pred HHHHHHhCcCC
Confidence 99999998765
No 156
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=74.50 E-value=18 Score=32.59 Aligned_cols=97 Identities=20% Similarity=0.324 Sum_probs=73.4
Q ss_pred CHHHHHhhhc-CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCC------CHHHHHHHHHHHHHHhhC
Q psy355 66 GLPVLQPLLE-GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS------NTTVQVKSLYAVSCLVRD 138 (285)
Q Consensus 66 g~~~Lv~lL~-s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~------~~~v~~~a~~ALs~l~r~ 138 (285)
.+|.++..+. +++.+|.-...-.++|++..--.+.+..+..|+++.|.+.+...+ +..-|+.||.-+||..|.
T Consensus 325 ~LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRa 404 (619)
T 3c2g_A 325 ILPFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRT 404 (619)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHH
Confidence 4677777665 899999999999999999999999999999999999998876532 334567788888887652
Q ss_pred -------------------ChH---hHHHHHhcCcHHHHHHhhccC
Q psy355 139 -------------------NEE---CLKEFIKRDGFSVLLRCIQSK 162 (285)
Q Consensus 139 -------------------~~~---~~~~f~~~~gi~~L~~~L~~~ 162 (285)
.+. +...|++...+..|+.+|+.+
T Consensus 405 lNNFLMmWIPm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e 450 (619)
T 3c2g_A 405 LNNFLMMWIPTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCE 450 (619)
T ss_dssp HHHHHGGGSCCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred HhhheeEEEecCCCccccCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 111 133466666777788887753
No 157
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=69.95 E-value=31 Score=27.36 Aligned_cols=94 Identities=10% Similarity=0.103 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhcCcchHHHHHHcCCHHHHHhhhc-----C-CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHH
Q psy355 40 ICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE-----G-SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 113 (285)
Q Consensus 40 ~~~~al~~L~~lv~~~dna~~~~~~Gg~~~Lv~lL~-----s-~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~ 113 (285)
.++.-|......+...+....|++.|++..+-.-|. | |+-.||...+.+|.++- -.++.+.+.|....+.
T Consensus 51 ~KLkmL~~V~~~L~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvV~ 126 (170)
T 3nfq_A 51 QKVKLLPKVVSVLSKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP----VKTEHLKESGLGRVVI 126 (170)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHSHHHHHH
T ss_pred HHHhhHHHHHHHHhHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC----CCHHHHhhCCCCceee
Confidence 578888888888888899999999999988877665 2 67799999999999874 2356677787777766
Q ss_pred HhhccC-CCHHHHHHHHHHHHHHhh
Q psy355 114 TSIEHD-SNTTVQVKSLYAVSCLVR 137 (285)
Q Consensus 114 ~LL~~~-~~~~v~~~a~~ALs~l~r 137 (285)
-+-.+. ..+..|+.|-.-|+.-.|
T Consensus 127 ~l~k~~~et~~nkrla~~Li~~WsR 151 (170)
T 3nfq_A 127 FYTKSKRVEAQLARLAEKLIAEWTR 151 (170)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHHTC
T ss_pred ehhcCCcccHHHHHHHHHHHHHHHH
Confidence 555442 346777777666665544
No 158
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=69.77 E-value=9.1 Score=31.57 Aligned_cols=90 Identities=8% Similarity=0.187 Sum_probs=65.1
Q ss_pred HHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHHHHHhcccCCCC
Q psy355 129 LYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQMCVLIDIEDAL 207 (285)
Q Consensus 129 ~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~L~~lL~~~~~~ 207 (285)
.-.|+.+++..+...+ ..+..|.+-|+++++.++..|..++-.++.+ ++.+...+.+..++..|+.++... .
T Consensus 26 ~leicd~i~~~~~~~k-----~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~--~ 98 (220)
T 1dvp_A 26 ILLICDEINQKDVTPK-----NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST--P 98 (220)
T ss_dssp HHHHHHHHHTTSSCHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC--S
T ss_pred HHHHHHhhcCCCcCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC--C
Confidence 3446666665443222 1334566677889999999999999998876 566777777778888888888754 2
Q ss_pred CccHHHHHHHHHHHHHhc
Q psy355 208 DTEMNEHLLSALASLIKD 225 (285)
Q Consensus 208 d~~~~e~al~aL~~l~~~ 225 (285)
+..++++++..+..-...
T Consensus 99 ~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 99 HENVRQKMLELVQTWAYA 116 (220)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 678999999988777644
No 159
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=68.03 E-value=15 Score=28.68 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=54.3
Q ss_pred HHHHHHhhc-cCcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHH-HHHhcccCCCCCccHHHHHHHHHHHHHh
Q psy355 152 FSVLLRCIQ-SKKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQ-MCVLIDIEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 152 i~~L~~~L~-~~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~-L~~lL~~~~~~d~~~~e~al~aL~~l~~ 224 (285)
+..|.+-|+ ++++.++..|..++-.++.+ ++.+...+.+..++.. |+.++......+..++++++..+..-..
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 345666776 47899999999988888776 6777778888889988 7888853211145789999998877664
No 160
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=59.59 E-value=37 Score=25.98 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhCChHh-HHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCC-chHHHHHHHCC-cHHHHHHhccc
Q psy355 127 KSLYAVSCLVRDNEEC-LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN-NQVKQVLLSMG-MVEQMCVLIDI 203 (285)
Q Consensus 127 ~a~~ALs~l~r~~~~~-~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~-~~~~~~l~~~g-~v~~L~~lL~~ 203 (285)
..+.-|++++++++.. ... ....|.+-|...+..++-||..+|.+|+..+ +.++..+.++- .|..+..+=..
T Consensus 30 ylm~EIA~~T~~s~~~~~~e-----im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~ 104 (140)
T 1vdy_A 30 YKLEEICDLLRSSHVSIVKE-----FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGH 104 (140)
T ss_dssp HHHHHHHHHHHHSCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCC
T ss_pred HHHHHHHHHHHhcchhHHHH-----HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCC
Confidence 3445667777665422 222 3567788888888999999999999999764 55666666543 23333332222
Q ss_pred CC--CCC---ccHHHHHHHHHHHHHhcC
Q psy355 204 ED--ALD---TEMNEHLLSALASLIKDS 226 (285)
Q Consensus 204 ~~--~~d---~~~~e~al~aL~~l~~~~ 226 (285)
++ .++ ..+|+.|-.++..|....
T Consensus 105 ~dp~~G~d~g~~VR~~AkEl~~ll~d~~ 132 (140)
T 1vdy_A 105 PDPLKGDALNKAVRETAHETISAIFSEE 132 (140)
T ss_dssp CCTTTSSCHHHHHHHHHHHHHHHHTCCS
T ss_pred CCcccccchhHHHHHHHHHHHHHHhCcC
Confidence 21 111 457888777776665443
No 161
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=59.33 E-value=30 Score=26.29 Aligned_cols=100 Identities=10% Similarity=0.032 Sum_probs=54.8
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHh
Q psy355 152 FSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQS 231 (285)
Q Consensus 152 i~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~ 231 (285)
++-|+.-|++.+--+...++-.+... ++ -+++.+...|.+. |..=+-.. |..+...-+....
T Consensus 33 lp~LL~WLQD~NWPvA~~i~~~L~~~---~~---------~l~p~I~~vl~s~---D~~W~ywi---l~~lv~~~~~~~~ 94 (134)
T 3ut4_A 33 IFDLLKWLQDYNWPIAKDILPVVVLH---QS---------IAMPHILTILQGN---DIMWKYWV---IKLMIPYLIYPNK 94 (134)
T ss_dssp HHHHHGGGSCTTSTTHHHHHHHHHHT---HH---------HHHHHHHHHHHSS---CHHHHHHH---HHHHGGGCCHHHH
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHc---cH---------hhHHHHHHHHHcC---ChHHHHHH---HHHHHHcCCHHHH
Confidence 46677777776655544444444322 11 2455666677665 65544444 3344544443221
Q ss_pred hcccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCC
Q psy355 232 LCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEED 275 (285)
Q Consensus 232 ~~~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~ 275 (285)
..+...|++....-...+..++.-+.|++||++||.+.
T Consensus 95 ------~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~~ 132 (134)
T 3ut4_A 95 ------QLVKSELERLSSLEIINEDIREIVNLSKDYLHFYYPDK 132 (134)
T ss_dssp ------HHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC---
T ss_pred ------HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcccc
Confidence 13445555444444435566777789999999999753
No 162
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=57.78 E-value=92 Score=32.28 Aligned_cols=130 Identities=12% Similarity=0.071 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHhhCC----hHhHHHHHhcCc
Q psy355 77 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE-HDSNTTVQVKSLYAVSCLVRDN----EECLKEFIKRDG 151 (285)
Q Consensus 77 ~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~-~~~~~~v~~~a~~ALs~l~r~~----~~~~~~f~~~~g 151 (285)
.++.+|..|-..|..+-++. ++.+.+...|. .+.+..+|-.|+..|-+.++.+ ++..+..++...
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~l 94 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSV 94 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 37778988888887764322 23444444333 4467899999999999887542 344445555555
Q ss_pred HHHHHHhhcc---CcHHHHHHHHHHHHHHhcCC-chHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhc
Q psy355 152 FSVLLRCIQS---KKEKLVIKSCFLIACLCTDN-NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKD 225 (285)
Q Consensus 152 i~~L~~~L~~---~~~~v~~ka~~~l~~L~~~~-~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~ 225 (285)
+..+...-.. .+..++.+++.+++.++... |..- .++++.|+.++.+ +...++.++.+|..|...
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~~----~~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSKQ----GETQTELVMFILLRLAED 163 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHHT----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHH
Confidence 5555443221 46899999999999987642 3111 2567777777764 345577888888887653
No 163
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=52.92 E-value=90 Score=25.21 Aligned_cols=136 Identities=15% Similarity=0.123 Sum_probs=78.5
Q ss_pred CCHHhHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC---------------------CHHHHHHHHHHHHHhhcCcchHH
Q psy355 1 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQD---------------------QKDICIGALDNLSDYVCSIDYAN 59 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~~d~~~~mk~~l~~l~~~~~---------------------~~~~~~~al~~L~~lv~~~dna~ 59 (285)
+|+|=+.|.++.-+.+.. ...+++++.|+.... +.......+....-++.+..---
T Consensus 5 LS~Elq~yf~~It~a~~~---~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~l 81 (196)
T 4atg_A 5 LPKELQLYFDKILSMIKS---DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFI 81 (196)
T ss_dssp SCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCC
T ss_pred cCHHHHHHHHHHHHHHHh---HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCCh
Confidence 588888899888888853 557788888866552 11222222333333333311000
Q ss_pred HHHHcCCHHHHHhhhcC---CCHHHHHHHHHHHHHHhhC----CHHHHHHHHhcCcHHHHHHhhc-cCCCHHHHHHHHHH
Q psy355 60 DFLKMGGLPVLQPLLEG---SDPELRWRAAETVADIVQN----NPFSQNFIIQTDFLNLLLTSIE-HDSNTTVQVKSLYA 131 (285)
Q Consensus 60 ~~~~~Gg~~~Lv~lL~s---~~~~vr~~A~~~lg~~a~n----n~~~q~~v~~~g~l~~L~~LL~-~~~~~~v~~~a~~A 131 (285)
+..-.--+|+++.|+=+ ....+|..|+.+++.++.. ++..+.. ++..+.+-+. ...+....--|++.
T Consensus 82 epYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~R-----I~~tl~k~l~dp~~~l~t~YGAi~G 156 (196)
T 4atg_A 82 DPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPR-----VLKTLKGVWMDPNRSEDSQYGALYC 156 (196)
T ss_dssp GGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHH-----HHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHH-----HHHHHHHHHcCCCCChHHHHHHHHH
Confidence 11111246778876532 2338999999999999863 2333333 3445555543 34567888888888
Q ss_pred HHHHhhCChHhHHHHH
Q psy355 132 VSCLVRDNEECLKEFI 147 (285)
Q Consensus 132 Ls~l~r~~~~~~~~f~ 147 (285)
|+.+- +.+.+.++
T Consensus 157 L~~lG---~~~vr~~l 169 (196)
T 4atg_A 157 LSILS---KNVVNTVI 169 (196)
T ss_dssp HHHHC---HHHHHTHH
T ss_pred HHHhH---HHHHHHhh
Confidence 88872 34444443
No 164
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=51.56 E-value=60 Score=24.70 Aligned_cols=89 Identities=12% Similarity=0.187 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHH
Q psy355 76 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVL 155 (285)
Q Consensus 76 s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L 155 (285)
++-+.|...+.|++-+.- ....+ +..+-+-+.. ..+.-+-.++|.+-.|+++...........+..+.+
T Consensus 22 nSk~~I~~LT~~a~~~~~-----~a~~I-----v~~i~~~i~k-~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f 90 (144)
T 1sz9_A 22 NSRPIITTLTKLAEENIS-----CAQYF-----VDAIESRIEK-CMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLY 90 (144)
T ss_dssp CCHHHHHHHHHHHHHTGG-----GHHHH-----HHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHH
T ss_pred ccHhHHHHHHHHHHHHHH-----HHHHH-----HHHHHHHhcc-CCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 445667766666666432 22233 3344445554 457899999999999999765555555556667777
Q ss_pred HHhhccCcHHHHHHHHHHHH
Q psy355 156 LRCIQSKKEKLVIKSCFLIA 175 (285)
Q Consensus 156 ~~~L~~~~~~v~~ka~~~l~ 175 (285)
.+.....+..+|.+...++.
T Consensus 91 ~~~~~~~d~~~r~k~~rL~~ 110 (144)
T 1sz9_A 91 KRTYLLVDNTTRTKLINMFK 110 (144)
T ss_dssp HHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 77777778888888777655
No 165
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=48.88 E-value=33 Score=26.56 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=51.3
Q ss_pred HHHHHHhhcc-CcHHHHHHHHHHHHHHhcC-CchHHHHHHHCCcHHH-HHHhcccCCCCCccHHHHHHHHHHHHHhcCh
Q psy355 152 FSVLLRCIQS-KKEKLVIKSCFLIACLCTD-NNQVKQVLLSMGMVEQ-MCVLIDIEDALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 152 i~~L~~~L~~-~~~~v~~ka~~~l~~L~~~-~~~~~~~l~~~g~v~~-L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
+..|.+-|.+ .++.++..|..++-.++.+ ++.+...+.+..++.. |+.++.........++++++..+..-....+
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 3455555654 5788877787777777665 6666667767777764 7777764311134799999999988876553
No 166
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=48.12 E-value=1.4e+02 Score=26.93 Aligned_cols=167 Identities=15% Similarity=0.135 Sum_probs=85.4
Q ss_pred CHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-----------HHHHH----hcCcHHHHHHhhc
Q psy355 96 NPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-----------LKEFI----KRDGFSVLLRCIQ 160 (285)
Q Consensus 96 n~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-----------~~~f~----~~~gi~~L~~~L~ 160 (285)
++......++...+-.|+.++++ .|+.-|......|.+|-...... .-.|+ ..+|+..|+++|.
T Consensus 163 ~~~~~k~~id~~Fi~~Ll~lfdS-eDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilg 241 (392)
T 2jak_A 163 QPNIAKKYIDQKFVLQLLELFDS-EDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILG 241 (392)
T ss_dssp CHHHHTTTSCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHH
T ss_pred ChhhhhhhCCHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 34444445566788899999997 67888887777776653322211 12222 2467776666653
Q ss_pred c---C-cHHHH-HHHHHHHHHHhc--CCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhc
Q psy355 161 S---K-KEKLV-IKSCFLIACLCT--DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLC 233 (285)
Q Consensus 161 ~---~-~~~v~-~ka~~~l~~L~~--~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~ 233 (285)
+ + ...++ ..-.|+...|.- ..+....+- .....-++.++.. |+.+-+.++..| ++.=|. .+
T Consensus 242 sIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~--~qL~ycv~qf~eK----Dp~L~~~vi~~L---Lk~WP~---tn 309 (392)
T 2jak_A 242 SIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYH--PQLAYCVVQFLEK----DSTLTEPVVMAL---LKYWPK---TH 309 (392)
T ss_dssp HHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTH--HHHHHHHHHHHHH----CGGGHHHHHHHH---HHSSCS---SC
T ss_pred HHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhH--HHHHHHHHHHHhc----CchhHHHHHHHH---HHhCCC---CC
Confidence 2 0 00000 011111221110 000000000 0011112222222 444444444333 333332 34
Q ss_pred ccCcccHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCC
Q psy355 234 RLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDS 276 (285)
Q Consensus 234 ~~~~~~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~ 276 (285)
..-+..|...|++.++.++ ..+++....-..+++.+|.+.+.
T Consensus 310 s~KevlFL~eleeiLe~~~-~~~f~~i~~~lF~~la~ci~S~h 351 (392)
T 2jak_A 310 SPKEVMFLNELEEILDVIE-PSEFVKIMEPLFRQLAKCVSSPH 351 (392)
T ss_dssp CTTHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHTCSS
T ss_pred chHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHcCCc
Confidence 4455678888988888776 67888888888888888877655
No 167
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1
Probab=44.33 E-value=1.7e+02 Score=26.01 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhhcCcc-----------------hHHHHHHcCCHHHHHhhhcCC---
Q psy355 21 GAELEKIIKTLKENQDQ---KDICIGALDNLSDYVCSID-----------------YANDFLKMGGLPVLQPLLEGS--- 77 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~---~~~~~~al~~L~~lv~~~d-----------------na~~~~~~Gg~~~Lv~lL~s~--- 77 (285)
...+.+.+..|.+..-+ -+....+|++|.+++.+.+ ..+-|...|.+..|+.+|..+
T Consensus 227 ~~~l~~f~~~l~~~~i~~~~~~~v~~~L~dLi~F~~~~~~~~~~~l~~~~g~p~r~RQkLlrEq~il~ll~~iL~~~f~~ 306 (381)
T 1n4k_A 227 SKVLGSIAGKLEKGTITQNERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTD 306 (381)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHTTTSCCSSCSGGGGGCCCCHHHHHHHHHTTHHHHHHHHHHGGGC-
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhcCcchhcccchhhhcCCccHHHHHHHHhhChHHHHHHHHHhhccc
Confidence 34455555555543333 2456777888888876542 123478889899999988654
Q ss_pred C-------------------HHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhC
Q psy355 78 D-------------------PELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRD 138 (285)
Q Consensus 78 ~-------------------~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~ 138 (285)
+ ..+-..+-++|..++++|..+|..+.+ .++.+...+.. + ..|..+|..++.+
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~i~~l~Y~LL~~~~~~~r~Nq~y~ak--~~~~~q~qig~--~----~~a~d~i~~ll~n 378 (381)
T 1n4k_A 307 CGDGPMLRLEELGDQRHAPFRHICRLCYRVLRHSQQDYRKNQEYIAK--QFGFMQKQIGY--D----VLAEDTITALLHN 378 (381)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHHCT--T----HHHHHHHHHHHTT
T ss_pred cCccchhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHhCc--c----ccHHHHHHHHHhc
Confidence 1 135666788888889999999988855 67766666653 2 4456666666666
Q ss_pred Ch
Q psy355 139 NE 140 (285)
Q Consensus 139 ~~ 140 (285)
|.
T Consensus 379 N~ 380 (381)
T 1n4k_A 379 NR 380 (381)
T ss_dssp C-
T ss_pred CC
Confidence 53
No 168
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=41.82 E-value=1.9e+02 Score=25.86 Aligned_cols=109 Identities=14% Similarity=0.180 Sum_probs=73.2
Q ss_pred cCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh-------
Q psy355 106 TDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC------- 178 (285)
Q Consensus 106 ~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~------- 178 (285)
.++++.++.+-.. .+..+|+..+.-|.-.+....... ...++.|..+|.+.+..+.+++..+.+++.
T Consensus 62 ~~fl~~il~f~~d-~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 62 DNFLDEIIAFQAD-KSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGHHHHHGGGGC-SCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999988774 678999999998888776443332 234567788888888888888877766664
Q ss_pred -cCCc---hHHHHHHHCC-cHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 179 -TDNN---QVKQVLLSMG-MVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 179 -~~~~---~~~~~l~~~g-~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
.+.. ...+..-... +-..++.++.+. +..++-.++..+..++
T Consensus 136 ~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~---n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 136 VKSRVISELQEACWDMVSAMAGDIILLLDSD---NDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS---SHHHHHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHhccC---CcchHHHHHHHHHHHH
Confidence 1211 0112222111 234566777777 8899999998888766
No 169
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=39.78 E-value=27 Score=35.69 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=65.6
Q ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhcc---CCCHHHHHHHHHHHH-----HHhhC
Q psy355 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH---DSNTTVQVKSLYAVS-----CLVRD 138 (285)
Q Consensus 67 ~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~---~~~~~v~~~a~~ALs-----~l~r~ 138 (285)
+.-|+++-.|..++||..|-.++-++.+--+.+... ++|.+++.|+. +.+..--+-|+|.|. ..+.+
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~ 209 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMT 209 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGG
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhc
Confidence 344555666899999999999999999876666644 58888888875 444456677777655 22332
Q ss_pred ChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHh
Q psy355 139 NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLC 178 (285)
Q Consensus 139 ~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~ 178 (285)
+..... .-++.|+++...+.+.++.-+..+...+.
T Consensus 210 d~~~~~-----~~~~ali~~~~~dKpsI~~l~~~l~~~i~ 244 (997)
T 1vsy_5 210 DYKDIG-----RLIFLLIECCRVNELEIGMYADKILTDIV 244 (997)
T ss_dssp CHHHHH-----HHHHHHHHTCSCSSSSTTTHHHHHHHHHH
T ss_pred ChHHHH-----HHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Confidence 322222 23567777766665666555554444444
No 170
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=39.71 E-value=19 Score=18.71 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHHh
Q psy355 4 ANRGFLLDALNSM 16 (285)
Q Consensus 4 e~~~~L~~al~~~ 16 (285)
.||-||.++|...
T Consensus 8 rRr~wL~~ll~~v 20 (24)
T 3h3g_B 8 RRRFFLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4788999999875
No 171
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=36.52 E-value=25 Score=35.84 Aligned_cols=31 Identities=35% Similarity=0.333 Sum_probs=28.1
Q ss_pred CHHHHHhhhcCCC-HHHHHHHHHHHHHHhhCC
Q psy355 66 GLPVLQPLLEGSD-PELRWRAAETVADIVQNN 96 (285)
Q Consensus 66 g~~~Lv~lL~s~~-~~vr~~A~~~lg~~a~nn 96 (285)
.+..++.+|.++. .+||..|+.+|+.+.+..
T Consensus 844 i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 844 ILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp THHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 4678888999999 999999999999998877
No 172
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=35.83 E-value=1.3e+02 Score=22.92 Aligned_cols=75 Identities=7% Similarity=0.035 Sum_probs=53.9
Q ss_pred HhHHHHHhcCcHHHHHHhhcc------CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHH
Q psy355 141 ECLKEFIKRDGFSVLLRCIQS------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEH 214 (285)
Q Consensus 141 ~~~~~f~~~~gi~~L~~~L~~------~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~ 214 (285)
.-+..|++.|.+..+-.-|.. ++..+|+...-+|..| |-.++.+.+.|+-..++.+-+++ ...+..+..
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvv~~l~k~~-~et~~nk~l 126 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTSGVGKIVYFYSINP-KESKEVRAS 126 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHCHHHHHHHHHHCT-TSCHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcCCCCcchhhhhcCC-ccCHHHHHH
Confidence 346789999999999888773 4689999888888876 44567788877777776665565 334566666
Q ss_pred HHHHHH
Q psy355 215 LLSALA 220 (285)
Q Consensus 215 al~aL~ 220 (285)
|-..+.
T Consensus 127 a~~Li~ 132 (145)
T 2xpp_A 127 AKALVQ 132 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 173
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=34.72 E-value=1.4e+02 Score=26.60 Aligned_cols=137 Identities=13% Similarity=0.125 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcC-cHHHHHHhh-
Q psy355 82 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD-GFSVLLRCI- 159 (285)
Q Consensus 82 r~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~-gi~~L~~~L- 159 (285)
+.+++.++--++..-+. .+.+..++.-......+..+--++..++|+-.+.....+ ++... -...+++.+
T Consensus 180 ~FP~LDLLRl~v~~~~~-------~~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~-ll~~~~~~~~i~~~i~ 251 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPY-------SSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVK-LLESNQVYKSIFETID 251 (362)
T ss_dssp CHHHHHHHHHHGGGCSC-------GGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHH-HHTSHHHHTTHHHHSC
T ss_pred cchHHHHHHHHhcCCCh-------HHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHH-HHhcchhHHHHHHHHH
Confidence 77888888877765432 123333433222234678888999999999876542333 33221 122333332
Q ss_pred ---c----cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhccc----CC--CCCccHHHHHHHHHHHHHhcC
Q psy355 160 ---Q----SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI----ED--ALDTEMNEHLLSALASLIKDS 226 (285)
Q Consensus 160 ---~----~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~----~~--~~d~~~~e~al~aL~~l~~~~ 226 (285)
. ..+..++..++.++.|++.-....+ .+...+..++..+.. .+ ..|.+..-.+|-||++|+..+
T Consensus 252 ~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 252 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1 2356789999999999875210000 002344455565551 00 127788888999999999776
Q ss_pred hHH
Q psy355 227 TEA 229 (285)
Q Consensus 227 ~~~ 229 (285)
+..
T Consensus 329 ~~~ 331 (362)
T 3l3f_X 329 PTL 331 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 174
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=33.40 E-value=2.7e+02 Score=25.08 Aligned_cols=138 Identities=12% Similarity=0.137 Sum_probs=76.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcH
Q psy355 85 AAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKE 164 (285)
Q Consensus 85 A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~ 164 (285)
=+.++...+..+|.....++ ..|++.=-. ++..=..--+.-|..++..-++..-.-+....+..+.+++.|++.
T Consensus 234 L~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~-tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hf 307 (403)
T 3fga_B 234 LAYCVVQFLEKDSTLTEPVV-----MALLKYWPK-THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHF 307 (403)
T ss_dssp HHHHHHHHHHHCGGGHHHHH-----HHHHHTCCS-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHhCchhHHHHH-----HHHHHhCCC-CCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 34444445555555444332 222222221 233333344555666666544432111223456778889999999
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHC--CcHHHHHHhc----ccCCCCCccHHHHHHHHHHHHHhcChHHHhhccc
Q psy355 165 KLVIKSCFLIACLCTDNNQVKQVLLSM--GMVEQMCVLI----DIEDALDTEMNEHLLSALASLIKDSTEAQSLCRL 235 (285)
Q Consensus 165 ~v~~ka~~~l~~L~~~~~~~~~~l~~~--g~v~~L~~lL----~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~ 235 (285)
+|-.+|.++.. ++.....+.+. -++|.+...| +.-+ +..++..+..+|..+...++.....|.+
T Consensus 308 qVAErAL~~wn-----Ne~i~~li~~n~~~IlPii~p~L~~~~~~HW--n~~v~~l~~~vlk~l~e~d~~lF~~~~~ 377 (403)
T 3fga_B 308 QVAERALYYWN-----NEYIMSLISDNAAKILPIMFPSLYRNSKTHW--NKTIHGLIYNALKLFMEMNQKLFDDCTQ 377 (403)
T ss_dssp HHHHHHHGGGG-----CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCS--CHHHHHHHHHHHHHHHTTSCCCCCTTHH
T ss_pred HHHHHHHHHhc-----cHHHHHHHHHhHHHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 99998876542 22222222111 1334443333 2222 7889999999999999999988888853
No 175
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=31.67 E-value=96 Score=19.35 Aligned_cols=40 Identities=13% Similarity=-0.033 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCCch
Q psy355 239 NLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDSLE 278 (285)
Q Consensus 239 ~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~~~ 278 (285)
.+.++|...+..=.-.+++.|-.+.|-+||+.-|+.+.++
T Consensus 8 sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~~~d 47 (52)
T 4gof_A 8 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVED 47 (52)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCCccc
Confidence 3456666555533335688899999999999999977654
No 176
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=29.94 E-value=1.8e+02 Score=22.90 Aligned_cols=77 Identities=5% Similarity=0.025 Sum_probs=53.9
Q ss_pred hHhHHHHHhcCcHHHHHHhhcc------CcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcccCCCCCccHHH
Q psy355 140 EECLKEFIKRDGFSVLLRCIQS------KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNE 213 (285)
Q Consensus 140 ~~~~~~f~~~~gi~~L~~~L~~------~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e 213 (285)
..-+..|++.|++..+-.-|.. +...+|+...-+|..| |-..+.+.+.|+-..++-+-+++ ...+..+.
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvV~~l~k~~-~et~~nkr 140 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL----PVKTEHLKESGLGRVVIFYTKSK-RVEAQLAR 140 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHSHHHHHHHHHHCT-TSCHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC----CCCHHHHhhCCCCceeeehhcCC-cccHHHHH
Confidence 3446789999999999888773 4689999988888876 44567777777766666555554 33456666
Q ss_pred HHHHHHHH
Q psy355 214 HLLSALAS 221 (285)
Q Consensus 214 ~al~aL~~ 221 (285)
.|-..+..
T Consensus 141 la~~Li~~ 148 (170)
T 3nfq_A 141 LAEKLIAE 148 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 177
>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} SCOP: d.279.1.1
Probab=28.99 E-value=34 Score=24.21 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=15.6
Q ss_pred CCHHhHHHHHHHHHHhc
Q psy355 1 MNEANRGFLLDALNSMM 17 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~ 17 (285)
|+++.|+||++-|+.+.
T Consensus 60 ~d~~aRk~L~~qMekFf 76 (94)
T 1t07_A 60 MNAEDRKFLQQEMDKFL 76 (94)
T ss_dssp TSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 78999999999999886
No 178
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=28.65 E-value=3.3e+02 Score=24.67 Aligned_cols=137 Identities=14% Similarity=0.093 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc-
Q psy355 82 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ- 160 (285)
Q Consensus 82 r~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~- 160 (285)
+.+++.++--++...+.. +.+..++.-......+..+--++..++|+-.+.....+.+....-...+++.+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 778888888777654421 223333322222346788889999999988764423433322112344444432
Q ss_pred -------cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhccc----C--CCCCccHHHHHHHHHHHHHhcCh
Q psy355 161 -------SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDI----E--DALDTEMNEHLLSALASLIKDST 227 (285)
Q Consensus 161 -------~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~~----~--~~~d~~~~e~al~aL~~l~~~~~ 227 (285)
..+..++..++.++.|++.-....+ .+...+..++..+.. . ...|.+..-.+|-||++|+..++
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 1256789999999999875210000 002344455555551 0 01277888888999999997666
Q ss_pred H
Q psy355 228 E 228 (285)
Q Consensus 228 ~ 228 (285)
.
T Consensus 393 ~ 393 (425)
T 3pst_A 393 T 393 (425)
T ss_dssp H
T ss_pred H
Confidence 4
No 179
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=27.68 E-value=1.4e+02 Score=23.99 Aligned_cols=119 Identities=11% Similarity=0.141 Sum_probs=66.8
Q ss_pred cHHHHHHhhccC-----CCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccC---cHHHHHHHHHHHHHHhc
Q psy355 108 FLNLLLTSIEHD-----SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK---KEKLVIKSCFLIACLCT 179 (285)
Q Consensus 108 ~l~~L~~LL~~~-----~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~---~~~v~~ka~~~l~~L~~ 179 (285)
.+|.+++.+... .+...-...+..+.++..+..-..+..+ +--+|.++.++=+. ...+|..|+.+++.++.
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYl-H~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~ 119 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYL-HQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYD 119 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGH-HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHH-HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 566666555431 2344444555555566654322111111 22456666665332 33899999999999987
Q ss_pred C----CchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccC
Q psy355 180 D----NNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLE 236 (285)
Q Consensus 180 ~----~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~ 236 (285)
. .+..+.. ++..+.+.+.++ +..+ ..--.|+..|..-+++.++.+--|
T Consensus 120 ~~~~~y~~L~~R-----I~~tl~k~l~dp---~~~l-~t~YGAi~GL~~lG~~~vr~~llP 171 (196)
T 4atg_A 120 TYSRSYKTLAPR-----VLKTLKGVWMDP---NRSE-DSQYGALYCLSILSKNVVNTVIRE 171 (196)
T ss_dssp HHTTTSTTHHHH-----HHHHHHHHHTCT---TSCH-HHHHHHHHHHHHHCHHHHHTHHHH
T ss_pred HhCccCchHHHH-----HHHHHHHHHcCC---CCCh-HHHHHHHHHHHHhHHHHHHHhhhc
Confidence 5 2334333 344566666555 4333 344667777777788888766444
No 180
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=27.13 E-value=81 Score=18.98 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=22.0
Q ss_pred CCHHhHHHHHHHHHHhcCCHHHHHHHHH
Q psy355 1 MNEANRGFLLDALNSMMVNVGAELEKII 28 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~~d~~~~mk~~l 28 (285)
+++|+.++|++..+.......+.|++++
T Consensus 22 lt~eE~~~l~~~A~~~g~s~SeyiR~~~ 49 (51)
T 2ba3_A 22 FSPVEDETIRKKAEDSGLTVSAYIRNAA 49 (51)
T ss_dssp ECHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4789999999988887666777777654
No 181
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=27.11 E-value=61 Score=24.68 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.9
Q ss_pred HHhHHHHHHHHHHhcCCH
Q psy355 3 EANRGFLLDALNSMMVNV 20 (285)
Q Consensus 3 ~e~~~~L~~al~~~~~d~ 20 (285)
++|.+||++|+-++-+.+
T Consensus 73 ~~Kl~WLe~vl~aid~~d 90 (139)
T 2vxg_A 73 ELKQRYLNEALLAINMAD 90 (139)
T ss_dssp HHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 689999999999996443
No 182
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=26.90 E-value=98 Score=21.95 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=27.1
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHHhhC----------------CHHHHHHHHhc-CcHHHHH
Q psy355 68 PVLQPLLEGSDPELRWRAAETVADIVQN----------------NPFSQNFIIQT-DFLNLLL 113 (285)
Q Consensus 68 ~~Lv~lL~s~~~~vr~~A~~~lg~~a~n----------------n~~~q~~v~~~-g~l~~L~ 113 (285)
...+..|...+++....|+.+|..++.| |+.+|..+... |++..|.
T Consensus 4 ~~~l~~L~~n~~~~~~~a~~tL~k~l~Nil~~P~e~KyR~Ir~~N~~f~~~v~~~~G~~e~L~ 66 (99)
T 2ccq_A 4 SPAVAELCQNTPETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLF 66 (99)
T ss_dssp SHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHCTTCGGGGEEETTCHHHHHHTTTSTTHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCCcccceeecCCHHHHHHhcCCccHHHHHH
Confidence 3445556666666667777666665544 66666666554 4444443
No 183
>1xs8_A UPF0269 protein YGGX; helix-turn-helix, metal transport; NMR {Salmonella typhimurium} SCOP: d.279.1.1 PDB: 1yhd_A
Probab=26.20 E-value=38 Score=23.85 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=15.2
Q ss_pred CCHHhHHHHHHHHHHhc
Q psy355 1 MNEANRGFLLDALNSMM 17 (285)
Q Consensus 1 m~~e~~~~L~~al~~~~ 17 (285)
|+++.|+||++-|+.+.
T Consensus 58 ~d~~~Rk~L~~qMekFf 74 (91)
T 1xs8_A 58 MNAEHRKLLEQEMVSFL 74 (91)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 68999999999998875
No 184
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=25.33 E-value=3.7e+02 Score=24.14 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=51.2
Q ss_pred HHHHHHHhhcCcch----HHHHHHcCCHHHHHhhhcCCCHHHHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccC
Q psy355 44 ALDNLSDYVCSIDY----ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD 119 (285)
Q Consensus 44 al~~L~~lv~~~dn----a~~~~~~Gg~~~Lv~lL~s~~~~vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~ 119 (285)
..+-|..+++..+. |..+++..-+-.|+.++.|++|.=|...-.+|-.+-..-...+..+.+ .+-..+.+.+...
T Consensus 104 VYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~ 182 (403)
T 3fga_B 104 VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYET 182 (403)
T ss_dssp HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCc
Confidence 34445566665432 344444455677899999999999988888877766544443332221 1112233333221
Q ss_pred CCHHHHHHHHHHHHHHhhCC
Q psy355 120 SNTTVQVKSLYAVSCLVRDN 139 (285)
Q Consensus 120 ~~~~v~~~a~~ALs~l~r~~ 139 (285)
..-.-....+..+++|++|.
T Consensus 183 e~~~GIaeLLeilgsIinGf 202 (403)
T 3fga_B 183 EHHNGIAELLEILGSIINGF 202 (403)
T ss_dssp CCCTTHHHHHHHHHHHHHHC
T ss_pred ccCCCHHHHHHHHHHHHccc
Confidence 11112235556666666654
No 185
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=23.25 E-value=73 Score=26.70 Aligned_cols=136 Identities=14% Similarity=0.130 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhh-
Q psy355 81 LRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCI- 159 (285)
Q Consensus 81 vr~~A~~~lg~~a~nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L- 159 (285)
-+.++..++--++.+-+. .+.+..++.-.-.+.++..+--++.+++|+-.+.....+.+....-...++..+
T Consensus 70 ~~fP~lDllRl~~~~~~~-------~~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~ 142 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPY-------SSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 142 (253)
T ss_dssp CCHHHHHHHHHHGGGCSC-------GGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSC
T ss_pred ccchHHHHHHHHHcCCch-------HHHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHH
Confidence 377777777776654332 123333332222234678899999999999886552444444321123333332
Q ss_pred ---c----cCcHHHHHHHHHHHHHHhcC---CchHHHHHHHCCcHHHHHHhccc----CC--CCCccHHHHHHHHHHHHH
Q psy355 160 ---Q----SKKEKLVIKSCFLIACLCTD---NNQVKQVLLSMGMVEQMCVLIDI----ED--ALDTEMNEHLLSALASLI 223 (285)
Q Consensus 160 ---~----~~~~~v~~ka~~~l~~L~~~---~~~~~~~l~~~g~v~~L~~lL~~----~~--~~d~~~~e~al~aL~~l~ 223 (285)
. +.+..+|..++.++.|++.. .+. +......++..+.. .+ ..|.+..-.++-||++++
T Consensus 143 ~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~------~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~ 216 (253)
T 3gae_A 143 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS------DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 216 (253)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS------CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc------hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHH
Confidence 1 13577888999999998752 111 12233444444442 10 126678888899999999
Q ss_pred hcChHH
Q psy355 224 KDSTEA 229 (285)
Q Consensus 224 ~~~~~~ 229 (285)
..++..
T Consensus 217 ~~~~~~ 222 (253)
T 3gae_A 217 TVEPTL 222 (253)
T ss_dssp HHSGGG
T ss_pred hCcHHH
Confidence 766643
No 186
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=22.32 E-value=72 Score=21.24 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhcCCCCch
Q psy355 259 KELEHVNSVLTEVFEEDSLE 278 (285)
Q Consensus 259 ~~~~~~~~il~~~f~~~~~~ 278 (285)
++.+++..-++.||++.+++
T Consensus 51 ~Ir~~~~e~~~~FFpe~~~~ 70 (70)
T 2g7o_A 51 DIREKVSSEMERFFPKNDDE 70 (70)
T ss_dssp HHHHHHHHHHHHHSCSCTTC
T ss_pred HHHHHHHHHHHHhCccccCC
Confidence 45578888999999886653
No 187
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=21.82 E-value=3.2e+02 Score=28.71 Aligned_cols=85 Identities=8% Similarity=-0.043 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhc---cCcHHHHHHHHHHHHHHhcCCchHHHHHHHCCcHHHHHHhcc
Q psy355 126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQ---SKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLID 202 (285)
Q Consensus 126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~---~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~g~v~~L~~lL~ 202 (285)
...+..||+|++.+|.. +.+. . .+...+. .=+..+-.....++.-|..-.+..++.++ ..|-+.+-
T Consensus 457 s~~idlLs~lv~~~p~~---l~e~-s--kl~e~~dyl~~lp~~~a~~Ll~al~PLik~s~~lrD~lI-----lvLRKamf 525 (1308)
T 3s51_A 457 NHFLDLFSDIIMYAPLI---LQNC-S--KVTETFDYLTFLPLQTVQGLLKAVQPLLKISMSMRDSLI-----LVLRKAMF 525 (1308)
T ss_dssp HHHHHHHHHHHHHCHHH---HSSC-H--HHHGGGGGTTTSCHHHHHHHHHHHHHHHTTCHHHHHHHH-----HHHHHHTT
T ss_pred hHHHHHHHHHHHhccHH---HHhh-h--HHHHHHHHHhcCCHHHHHHHHHHHhHHHhcCHHHHHHHH-----HHHHHHHh
Confidence 44567777777765531 2222 1 3333322 22334444445555556665665655543 34555555
Q ss_pred cCCCCCccHHHHHHHHHHHHHh
Q psy355 203 IEDALDTEMNEHLLSALASLIK 224 (285)
Q Consensus 203 ~~~~~d~~~~e~al~aL~~l~~ 224 (285)
+. +.+.|..|..++..|++
T Consensus 526 ~r---e~~~R~~AV~GfL~lLk 544 (1308)
T 3s51_A 526 AS---QLDARKSAVAGFLLLLK 544 (1308)
T ss_dssp CS---SHHHHHHHHHHHHHHHH
T ss_pred cc---cHHHHHHHHHHHHHHHH
Confidence 55 66667777766666663
No 188
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=21.44 E-value=3.6e+02 Score=22.49 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhh-CCHHHHHHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHh
Q psy355 80 ELRWRAAETVADIVQ-NNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRC 158 (285)
Q Consensus 80 ~vr~~A~~~lg~~a~-nn~~~q~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~ 158 (285)
+.+...+.-+-.++- ++|..- ...++.++.+.. +++..+|+..+.-|.-.++..+.-. ...++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~-~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAH-DSNMEVRKQVVAFVEQVCKVKVELL-----PHVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGG-CSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 455555555555333 344321 236777777654 4778999988888887775544322 2346677788
Q ss_pred hccCcHHHHHHHHHHHHHHhc--------CCc---hHHHHHHHCC-cHHHHHHhcccCCCCCccHHHHHHHHHHHHH
Q psy355 159 IQSKKEKLVIKSCFLIACLCT--------DNN---QVKQVLLSMG-MVEQMCVLIDIEDALDTEMNEHLLSALASLI 223 (285)
Q Consensus 159 L~~~~~~v~~ka~~~l~~L~~--------~~~---~~~~~l~~~g-~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~ 223 (285)
|.+.++.+.+++..+.+++.. ..+ ...+..-... +=..++.++.+. +..++-.++..+..+.
T Consensus 99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~---n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE---NDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS---CHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC---CcchHHHHHHHHHHHH
Confidence 888888888888776666542 211 1222222222 235667778877 8899999998888866
No 189
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=21.15 E-value=1.5e+02 Score=17.88 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=26.5
Q ss_pred cHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHhHHHHHh
Q psy355 108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK 148 (285)
Q Consensus 108 ~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~~~~f~~ 148 (285)
++..|++-|++.+.+.-+-..+ +|.+++|.-..+|++
T Consensus 2 aLqqLl~tlksp~sp~qqqqvl----~ILksnPqLMAAfIk 38 (47)
T 1zoq_C 2 ALQDLLRTLKSPSSPQQQQQVL----NILKSNPQLMAAFIK 38 (47)
T ss_dssp HHHHHHHTCCSCCCHHHHHHHH----HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHH----HHHHcCHHHHHHHHH
Confidence 4667788888766665554443 678889998888885
No 190
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=21.12 E-value=37 Score=24.63 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=12.9
Q ss_pred CHHhHHHHHHHHHHh
Q psy355 2 NEANRGFLLDALNSM 16 (285)
Q Consensus 2 ~~e~~~~L~~al~~~ 16 (285)
|+|..+||+.||+.=
T Consensus 28 SkeTyEWLqAal~RK 42 (111)
T 1xg8_A 28 SKDIYDWLQPLLKRK 42 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhCc
Confidence 688999999999764
No 191
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=21.09 E-value=4.8e+02 Score=23.81 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=77.7
Q ss_pred HHHHhcCcHHHHHHhhccCCCHHHHHHHHHHHHHHhhCChHh-----------HHHHH----hcCcHHHHHHhhcc---C
Q psy355 101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC-----------LKEFI----KRDGFSVLLRCIQS---K 162 (285)
Q Consensus 101 ~~v~~~g~l~~L~~LL~~~~~~~v~~~a~~ALs~l~r~~~~~-----------~~~f~----~~~gi~~L~~~L~~---~ 162 (285)
...++...+-.|+.++++ .|+.-|...-..|-+|-...... .-.|+ ..+|+..|+++|.+ +
T Consensus 156 k~~id~~Fi~~Ll~lfdS-eDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDS-EDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GGTSCHHHHHHHHHTTTS-STHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhhCCHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 344556678889999997 67887777777776653322111 12222 24677777666532 0
Q ss_pred -cHHHH-HHHHHHHHHHhc--CCchHHHHHHHCCcHHHHHHhcccCCCCCccHHHHHHHHHHHHHhcChHHHhhcccCcc
Q psy355 163 -KEKLV-IKSCFLIACLCT--DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPL 238 (285)
Q Consensus 163 -~~~v~-~ka~~~l~~L~~--~~~~~~~~l~~~g~v~~L~~lL~~~~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~~~~ 238 (285)
...++ ..-.|+...|.- ..+....+- ......++.++.. |+.+-+.++..| ++.=|. .+..-+.
T Consensus 235 fa~PLKeehk~fl~~vLlPLhk~~~l~~y~--~qL~ycv~qf~eK----Dp~L~~~vi~~L---Lk~WP~---tns~Kev 302 (449)
T 2npp_B 235 FALPLKEEHKIFLLKVLLPLHKVKSLSVYH--PQLAYCVVQFLEK----DSTLTEPVVMAL---LKYWPK---THSPKEV 302 (449)
T ss_dssp CCSSCCHHHHHHHHHTTGGGGGSSCGGGTH--HHHHHHHHHHHHH----CGGGHHHHHHHH---HHTCCS---SCHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHccchhHHhH--HHHHHHHHHHHhc----CcHhHHHHHHHH---HHhCCC---CCchHHH
Confidence 00000 111122221110 000000000 0011112222222 344444333333 333331 2222234
Q ss_pred cHHHHHHHHHHHccChHhhHHHHHHHHHHHHHhcCCCC
Q psy355 239 NLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVFEEDS 276 (285)
Q Consensus 239 ~l~~~l~~~~~~l~~~~e~~~~~~~~~~il~~~f~~~~ 276 (285)
.|...|++.++.+. ..+++....-..+.+.+|-+.+.
T Consensus 303 lFL~eleeile~~~-~~ef~~i~~~lF~~la~ci~S~h 339 (449)
T 2npp_B 303 MFLNELEEILDVIE-PSEFVKIMEPLFRQLAKCVSSPH 339 (449)
T ss_dssp HHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 67777877777665 56788888777777777776654
No 192
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=21.00 E-value=4.8e+02 Score=23.80 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhCChHhHHHHHhcCcHHHHHHhhccCcHHHHHHHHHHHHHHhcCCchHHHHHHHC--CcHHHHHHhc-c
Q psy355 126 VKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM--GMVEQMCVLI-D 202 (285)
Q Consensus 126 ~~a~~ALs~l~r~~~~~~~~f~~~~gi~~L~~~L~~~~~~v~~ka~~~l~~L~~~~~~~~~~l~~~--g~v~~L~~lL-~ 202 (285)
.--+.-|..++...++..-.=+....+..+.++++|++.+|-.+|.++.. ++.....+.+. .++|.+..-| +
T Consensus 302 vlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~-----N~~i~~li~~n~~~IlPii~p~L~~ 376 (449)
T 2npp_B 302 VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN-----NEYIMSLISDNAAKILPIMFPSLYR 376 (449)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CHHHHHHHHTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHC-----CHHHHHHHHhchhhhHHhhHHHHHH
Confidence 34455666666654443211122446678889999999999999876543 23333222221 2335555544 2
Q ss_pred cC-CCCCccHHHHHHHHHHHHHhcChHHHhhccc
Q psy355 203 IE-DALDTEMNEHLLSALASLIKDSTEAQSLCRL 235 (285)
Q Consensus 203 ~~-~~~d~~~~e~al~aL~~l~~~~~~~~~~~~~ 235 (285)
.. +.=+..++..+..++..+...++.....|..
T Consensus 377 ~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~ 410 (449)
T 2npp_B 377 NSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQ 410 (449)
T ss_dssp CTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 21 1116789999999999999999998888853
No 193
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A*
Probab=20.48 E-value=4.6e+02 Score=24.91 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhccCCCH---HHHHHHHHHHHHhhcCcch-----------------HHHHHHcCCHHHHHhhhcCCCHH
Q psy355 21 GAELEKIIKTLKENQDQK---DICIGALDNLSDYVCSIDY-----------------ANDFLKMGGLPVLQPLLEGSDPE 80 (285)
Q Consensus 21 ~~~mk~~l~~l~~~~~~~---~~~~~al~~L~~lv~~~dn-----------------a~~~~~~Gg~~~Lv~lL~s~~~~ 80 (285)
.+.++..++.|.....+. .-...+|++|.++|.+..| .+-+...+.++.|+.+|..+=++
T Consensus 450 ~~~L~~~~~~l~~~~i~~~~~~~~~~~L~dl~~F~~~~~n~~~~~l~~~~g~pnr~RQKLlREQ~il~~l~~iL~~~f~~ 529 (604)
T 3uj4_A 450 SKVLGSIAGKLEKGTITQNERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTD 529 (604)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC---------------CCCHHHHHHHHHTTHHHHHHHHTC-----
T ss_pred HHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHhCcCcCccchhhcccCCcCHHHHHHHHhhhHHHHHHHHHhcccCC
Confidence 455677777776665432 3356778888888765432 22367788889999999765443
Q ss_pred ----------------------HHHHHHHHHHHHhhCCHHHHHHHHh
Q psy355 81 ----------------------LRWRAAETVADIVQNNPFSQNFIIQ 105 (285)
Q Consensus 81 ----------------------vr~~A~~~lg~~a~nn~~~q~~v~~ 105 (285)
+-..+-++|-..+++|..+|..+.+
T Consensus 530 ~~~~~~~~l~~l~~~~~~~~~~i~~l~Y~~L~~~~~~~rkNQeyiak 576 (604)
T 3uj4_A 530 AGDGPMLRLEELGDQRHAPFRHIARLAYRVLRHSQQDYRKNQEYIAK 576 (604)
T ss_dssp ---------------------CHHHHHHHHHHHTTTTCHHHHHHHHC
T ss_pred cCccchhhHHhhhcccchHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 3344556666666666666666644
No 194
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=20.30 E-value=3.5e+02 Score=23.24 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=39.5
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHH-HHhhcCcchHHHHHHcCCHHHHHh-hhcCCCHHHHHHHHHHHHH
Q psy355 23 ELEKIIKTLKENQDQKDICIGALDNL-SDYVCSIDYANDFLKMGGLPVLQP-LLEGSDPELRWRAAETVAD 91 (285)
Q Consensus 23 ~mk~~l~~l~~~~~~~~~~~~al~~L-~~lv~~~dna~~~~~~Gg~~~Lv~-lL~s~~~~vr~~A~~~lg~ 91 (285)
.+.++.+.|.....+.+..+.+|..| ..+. .-.++...-+|...|. |..|++++|+..|-.+|..
T Consensus 5 el~~~~~~L~k~~~~~~~~l~~L~~L~~~~~----it~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~ 71 (309)
T 1pqv_S 5 EVLVHVKNLEKNKSNDAAVLEILHVLDKEFV----PTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISS 71 (309)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhcCC----CCHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34444444544334456677777777 5433 2234444455655555 7778999999988888775
Done!