RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy355
(285 letters)
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 37.3 bits (87), Expect = 0.002
Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 60 DFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHD 119
++ GGLP L LL SD ++ AA ++++ N + +++ L L+ +
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL-KS 60
Query: 120 SNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 179
+ V +L+A+ L E+ ++ G L+ + S E + + ++ L +
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
Score = 33.4 bits (77), Expect = 0.032
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 24 LEKIIKTLKENQDQ-KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELR 82
L ++ L + + + AL NLS + D ++ GGLP L LL+ D E+
Sbjct: 9 LPALVSLLSSSDENVQREAAWALSNLSA--GNNDNIQAVVEAGGLPALVQLLKSEDEEVV 66
Query: 83 WRAAETVADIVQNNPFSQNFIIQTDFLNLLL 113
A + ++ ++ +++ + L+
Sbjct: 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKLV 97
Score = 30.0 bits (68), Expect = 0.48
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 16 MMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL 74
+V G L +++ LK E+++ + AL NL+ D L+ GG+P L LL
Sbjct: 44 AVVEAGG-LPALVQLLKSEDEEVVKAALWALRNLAA--GPEDNKLIVLEAGGVPKLVNLL 100
Query: 75 EGSDPELRWRAAETVADIVQ 94
+ S+ +++ A ++++
Sbjct: 101 DSSNEDIQKNATGALSNLAS 120
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 32.0 bits (72), Expect = 0.44
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 73 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQT-DFLNLLLTSIEHDSNTTV 124
+ GSD +W + QN F N I Q L LT++ H SN T
Sbjct: 918 VEAGSDMTFKWTIDDKPFFTFQNTVF--NVIYQHAAVFKLSLTAMNHVSNLTE 968
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 29.2 bits (66), Expect = 0.56
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 126
LP L LL+ DPE+R AAE + + +P + L LL ++ D + V+
Sbjct: 33 LPALLELLKDPDPEVRRAAAEALGKL--GDP---------EALPALLELLQDDDDAVVRA 81
Query: 127 KSLYA 131
+ A
Sbjct: 82 AAASA 86
>gnl|CDD|227556 COG5231, VMA13, Vacuolar H+-ATPase V1 sector, subunit H [Energy
production and conversion].
Length = 432
Score = 31.1 bits (70), Expect = 0.69
Identities = 16/90 (17%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 5 NRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFL-K 63
+ F L+ ++ + ++ + K L+ N IC+ A ++ V + N L K
Sbjct: 339 KKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICV-ACSDIFQLVRASPEINAVLSK 397
Query: 64 MGGLPVLQPLLEGSDPELRWRAAETVADIV 93
G ++ L+ D ++++ A + + +
Sbjct: 398 YGVKEIIMNLINHDDDDVKFEALQALQTCI 427
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
trafficking and secretion].
Length = 526
Score = 31.0 bits (70), Expect = 0.84
Identities = 27/144 (18%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
Query: 65 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTV 124
G +P+ LL ++ ++R +A + +I ++ +++++Q L LL + +
Sbjct: 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHIS 216
Query: 125 QVKSL-YAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ 183
+++ + +S L R +L + I S+ ++++ +C+ I+ L N+
Sbjct: 217 MLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNE 276
Query: 184 VKQVLLSMGMVEQMCVLIDIEDAL 207
Q +L +G+ ++ L+ E A
Sbjct: 277 KIQAVLDVGIPGRLVELLSHESAK 300
Score = 29.9 bits (67), Expect = 1.9
Identities = 34/177 (19%), Positives = 74/177 (41%), Gaps = 12/177 (6%)
Query: 46 DNLSDYVCSIDYAND--------FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP 97
+ L D +I Y +D L +G L LL +++ A +V +IV +
Sbjct: 258 EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD 317
Query: 98 FSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLR 157
II L + + ++ ++ + +S + N E ++ I + L+
Sbjct: 318 DQTQVIINCGALKAFRSLLSSPKE-NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIH 376
Query: 158 CIQSKKEKLVIKSCFLIACLCTDNNQ---VKQVLLSMGMVEQMCVLIDIEDALDTEM 211
+ S + K+ ++C+ I+ + + + L+S G ++ +C L+D+ D E+
Sbjct: 377 LLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEV 433
>gnl|CDD|235119 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 217
Score = 29.6 bits (67), Expect = 1.4
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 166 LVIKSCFLIACLCTDNNQVKQVLLSMGMVE 195
L I+ I CLC + KQ+ L M MVE
Sbjct: 57 LTIRHGSGIVCLCLTEERRKQLDLPM-MVE 85
>gnl|CDD|184427 PRK13969, PRK13969, proline racemase; Provisional.
Length = 334
Score = 29.1 bits (65), Expect = 2.5
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 247 IKEKHAGNE---VYHKELEHVNSV-LTEVFEEDSLEEFDHQD 284
+K +HA NE + H LEH+ +V L E+++E + D+++
Sbjct: 200 MKIRHAVNEQIEIKHPVLEHIKTVDLVEIYDEAKHPDADYKN 241
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat family is
related to armadillo/beta-catenin-like repeats (see
pfam00514). These EZ repeats are found in subunits of
cyanobacterial phycocyanin lyase and other proteins and
probably carry out a scaffolding role.
Length = 55
Score = 25.9 bits (57), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
LP L PLL+ D E+R AA + I
Sbjct: 30 LPALLPLLKDDDDEVREAAAWALGRI 55
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase
inhibitor.
Length = 596
Score = 27.9 bits (62), Expect = 8.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 22 AELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLK 63
++++KII+T+ K C L ++ S+ D LK
Sbjct: 76 SQVDKIIQTVCNATLYKQTCENTLKKGTEKDPSLAQPKDLLK 117
>gnl|CDD|237346 PRK13317, PRK13317, pantothenate kinase; Provisional.
Length = 277
Score = 27.2 bits (61), Expect = 8.9
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 21 GAELEKIIKTLKENQDQKDICI-----GALDNLSDYVCSIDYANDFL 62
AE +K+I L QD + IC+ G L L +Y I +F
Sbjct: 32 SAEGKKVIDWLINLQDIEKICLTGGKAGYLQQLLNYGYPIAEFVEFE 78
>gnl|CDD|176748 cd08337, DED_c-FLIP_repeat1, Death Effector Domain, repeat 1, of
cellular FLICE-Inhibitory Protein. Death Effector
Domain (DED), repeat 1, similar to that found in
FLICE-inhibitory protein (c-FLIP/CASH, also known as
Casper/iFLICE/FLAME-1/CLARP/MRIT/usurpin). c-FLIP is a
catalytically inactive homolog of the initator
procaspases-8 and -10. It negatively influences
apoptotic signaling by interfering with the efficient
formation of the Death Inducing Signalling Complex
(DISC). At low levels, c-FLIP has been shown to enhance
apoptotic signaling by allosterically activating
caspase-8. As a modulator of the initiator caspases,
c-FLIP regulates life and death in various types of
cells and tissues. All members contain two N-terminal
DEDs and a C-terminal pseudo-caspase domain. DEDs
comprise a subfamily of the Death Domain (DD)
superfamily. DDs are protein-protein interaction domains
found in a variety of domain architectures. Their common
feature is that they form homodimers by self-association
or heterodimers by associating with other members of the
DD superfamily including PYRIN and CARD (Caspase
activation and recruitment domain). They serve as
adaptors in signaling pathways and can recruit other
proteins into signaling complexes.
Length = 80
Score = 25.9 bits (57), Expect = 9.2
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 198 CVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNF 246
VL +E+ LDT+ +E LL D T AQ L LN + KL
Sbjct: 4 EVLRQVEEELDTDEDELLLFLCRDAAPDCTTAQLRDLLRALNERGKLTL 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,897,197
Number of extensions: 1298619
Number of successful extensions: 1373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1368
Number of HSP's successfully gapped: 36
Length of query: 285
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 189
Effective length of database: 6,679,618
Effective search space: 1262447802
Effective search space used: 1262447802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)