RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy355
(285 letters)
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 162 bits (412), Expect = 1e-48
Identities = 89/269 (33%), Positives = 138/269 (51%), Gaps = 7/269 (2%)
Query: 18 VNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGL-PVLQPLLEG 76
+ V ++ E + GAL+ L+D ++D A DF ++ G+ ++ LE
Sbjct: 34 LRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA 93
Query: 77 SDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 136
LRWRAA+ + QN Q ++ L LL ++ D+ TV+VK+L+A+SCLV
Sbjct: 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 153
Query: 137 RDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 196
R+ E L +F++ DGFSVL+R +Q + +KL +KS FL+ L + + K L SMGMV+Q
Sbjct: 154 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213
Query: 197 MCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEV 256
+ L+ E + +EH+L AL SL+ D + CR L L+ L + +E
Sbjct: 214 LVALVRTEHS---PFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE 270
Query: 257 YHKELEHVNSVLTEVFEEDSLEEFDHQDR 285
Y +ELE +L F D DR
Sbjct: 271 YQEELEFCEKLLQTCFSS---PADDSMDR 296
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 72.4 bits (177), Expect = 2e-14
Identities = 32/229 (13%), Positives = 85/229 (37%), Gaps = 9/229 (3%)
Query: 11 DALNSMMVNVGAELEKIIKTLKENQD--QKDICIGALDNLSDYVCSIDYANDFLKMGGLP 68
+A ++ + I++T++ D G L NLS + K GG+P
Sbjct: 181 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH---HREGLLAIFKSGGIP 237
Query: 69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKS 128
L +L + + A T+ +++ + ++ + L ++ + +N +
Sbjct: 238 ALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAIT 296
Query: 129 LYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVL 188
+ L N+E + G L+ +++ + ++ + + + + + K +
Sbjct: 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 356
Query: 189 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEP 237
+ G ++ L + ++ L L +L +T+ + + L
Sbjct: 357 VEAGGMQ---ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLG 402
Score = 63.1 bits (153), Expect = 2e-11
Identities = 30/194 (15%), Positives = 60/194 (30%), Gaps = 12/194 (6%)
Query: 33 ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 92
+Q C+ L NLSD G L L LL D + AA ++++
Sbjct: 372 PSQRLVQNCLWTLRNLSD-----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426
Query: 93 VQNNPFSQNFIIQTDFLNLLLTSIEHDSNT-TVQVKSLYAVSCLVR---DNEECLKEFIK 148
NN ++ + Q + L+ ++ + + ++ A+ L D E
Sbjct: 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486
Query: 149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD 208
G V+++ + +IK+ + L G + L+ +
Sbjct: 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP---RLVQLLVRAH 543
Query: 209 TEMNEHLLSALASL 222
+
Sbjct: 544 QDTQRRTSMGGTQQ 557
Score = 61.6 bits (149), Expect = 6e-11
Identities = 27/192 (14%), Positives = 69/192 (35%), Gaps = 9/192 (4%)
Query: 52 VCSIDYAND-FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLN 110
V I+Y +D L +P L LL D + +AA V + + + ++
Sbjct: 136 VNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 195
Query: 111 LLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKS 170
++ ++++ ++ + + L + E L K G L+ + S + ++ +
Sbjct: 196 AIVRTMQNTNDVETARCTSGTLHNLS-HHREGLLAIFKSGGIPALVNMLGSPVDSVLFHA 254
Query: 171 CFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230
+ L K + G ++ ++ + + + + L L + E++
Sbjct: 255 ITTLHNLLLHQEGAKMAVRLAGGLQ---KMVALLNKTNVKFLAITTDCLQILAYGNQESK 311
Query: 231 SLCR----LEPL 238
+ + L
Sbjct: 312 LIILASGGPQAL 323
Score = 51.2 bits (122), Expect = 2e-07
Identities = 33/220 (15%), Positives = 68/220 (30%), Gaps = 29/220 (13%)
Query: 24 LEKIIKTLK--ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPEL 81
L ++K L + +G + NL+ + G +P L LL + +
Sbjct: 490 LPVVVKLLHPPSHWPLIKATVGLIRNLA---LCPANHAPLREQGAIPRLVQLLVRAHQDT 546
Query: 82 RWRAAETVADIVQNNPFSQNFIIQ--TDFLNLLLTSIE------------------HDSN 121
+ R + I++ T L++L I +
Sbjct: 547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPI 606
Query: 122 TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 181
+Q + + L +D +E + + L + S+ E + + ++ + D
Sbjct: 607 ENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665
Query: 182 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221
Q + LS+ + L E E + L A
Sbjct: 666 PQDYKKRLSVELTS---SLFRTEPMTWNETGDLGLDIGAQ 702
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 68.8 bits (169), Expect = 3e-14
Identities = 36/210 (17%), Positives = 89/210 (42%), Gaps = 7/210 (3%)
Query: 14 NSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP 72
+ + G+EL ++++ L +Q + + L ++ + + G LP L
Sbjct: 4 SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASG--GNEQIQAVIDAGALPALVQ 61
Query: 73 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 132
LL + ++ A +++I +I L L+ + N + ++L+A+
Sbjct: 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWAL 120
Query: 133 SCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 192
S + E ++ I L++ + S E+++ ++ + ++ + + N+ KQ + G
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 180
Query: 193 MVEQMCVLIDIEDALDTEMNEHLLSALASL 222
+E++ L E+ ++ + AL L
Sbjct: 181 ALEKLEQLQSHENE---KIQKEAQEALEKL 207
Score = 28.0 bits (63), Expect = 2.9
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 34 NQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIV 93
N+ + AL N++ + + G L L+ L + +++ A E + +
Sbjct: 151 NEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208
Query: 94 QN 95
+
Sbjct: 209 SH 210
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 68.5 bits (167), Expect = 3e-13
Identities = 41/256 (16%), Positives = 104/256 (40%), Gaps = 20/256 (7%)
Query: 14 NSMMVNVGAELEKIIKTLKENQD---QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVL 70
+ ++ ++ + L + D D C A+ L+D + +K G +P L
Sbjct: 223 PAPPLDAVEQILPTLVRLLHHNDPEVLADSC-WAISYLTDG--PNERIEMVVKKGVVPQL 279
Query: 71 QPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLY 130
LL ++ + A + +IV +I L + + + + T +Q ++ +
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATW 338
Query: 131 AVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD-NNQVKQVLL 189
+S + ++ +++ + L+ + K ++ + I + + L+
Sbjct: 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV 398
Query: 190 SMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFK----LN 245
G++E + L+ + DT++ + +L A++++ + A+ L E L++ + L+
Sbjct: 399 HCGIIEPLMNLLSAK---DTKIIQVILDAISNIFQA---AEKLGETEKLSIMIEECGGLD 452
Query: 246 FIKE--KHAGNEVYHK 259
I+ +H VY
Sbjct: 453 KIEALQRHENESVYKA 468
Score = 57.3 bits (138), Expect = 2e-09
Identities = 33/213 (15%), Positives = 82/213 (38%), Gaps = 11/213 (5%)
Query: 24 LEKIIKTLK--ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPEL 81
+ K + L + + AL N++ + + + G +P LL +
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASG--TSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 82 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSL----YAVSCLVR 137
+A + +I + ++ +I+ ++ LL + +T+ L + +S L R
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219
Query: 138 DNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQM 197
+ L+R + +++ SC+ I+ L N+ ++++ G+V Q+
Sbjct: 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279
Query: 198 CVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230
L+ + + L A+ +++ + E
Sbjct: 280 VKLLGAT---ELPIVTPALRAIGNIVTGTDEQT 309
Score = 49.6 bits (118), Expect = 5e-07
Identities = 30/209 (14%), Positives = 75/209 (35%), Gaps = 6/209 (2%)
Query: 16 MMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL 74
M+V G + +++K L + A+ N+ + + + G L V LL
Sbjct: 269 MVVKKGV-VPQLVKLLGATELPIVTPALRAIGNIV--TGTDEQTQKVIDAGALAVFPSLL 325
Query: 75 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 134
++ A T+++I ++ + L+ + ++ Q ++ +A++
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV-GVLSKADFKTQKEAAWAITN 384
Query: 135 LVRD-NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 193
E + + L+ + +K K++ I+ + ++ + M
Sbjct: 385 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIM 444
Query: 194 VEQMCVLIDIEDALDTEMNEHLLSALASL 222
+E+ L IE E ++L +
Sbjct: 445 IEECGGLDKIEALQRHENESVYKASLNLI 473
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 68.0 bits (166), Expect = 4e-13
Identities = 35/191 (18%), Positives = 82/191 (42%), Gaps = 8/191 (4%)
Query: 37 QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN 96
D C AL LSD D + G L LL +D ++ A V +IV +
Sbjct: 209 LADAC-WALSYLSDG--PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGD 265
Query: 97 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLL 156
I+ L LL + +++ ++ + +S + N ++ I + F L+
Sbjct: 266 DIQTQVILNCSALQSLLHLLSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALI 324
Query: 157 RCIQSKKEKLVIKSCFLIACLCT-DNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHL 215
+Q+ + + ++ + I + + + + L+ +G ++ +C L+ + D+++ +
Sbjct: 325 SILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM---DSKIVQVA 381
Query: 216 LSALASLIKDS 226
L+ L ++++
Sbjct: 382 LNGLENILRLG 392
Score = 66.4 bits (162), Expect = 1e-12
Identities = 32/215 (14%), Positives = 87/215 (40%), Gaps = 8/215 (3%)
Query: 16 MMVNVGAELEKIIKTLK--ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL 73
++ G + + ++ LK EN + L N++ + ++ G +P+ L
Sbjct: 59 VISTPGV-VARFVEFLKRKENCTLQFESAWVLTNIAS--GNSLQTRIVIQAGAVPIFIEL 115
Query: 74 LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS 133
L +++ +A + +I ++ +++++ + L LL + T+ +++A+S
Sbjct: 116 LSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175
Query: 134 CLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 193
L R + +VL + ++ +C+ ++ L N Q ++ G+
Sbjct: 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGV 235
Query: 194 VEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228
L+++ D ++ L A+ +++
Sbjct: 236 CR---RLVELLMHNDYKVVSPALRAVGNIVTGDDI 267
Score = 59.5 bits (144), Expect = 3e-10
Identities = 22/176 (12%), Positives = 67/176 (38%), Gaps = 4/176 (2%)
Query: 65 GGLPVLQPLLEGSDPELRWRAAETVADIVQN--NPFSQNFIIQTDFLNLLLTSIEHDSNT 122
+ ++ PE + A + ++ NP I + + ++ N
Sbjct: 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENC 79
Query: 123 TVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNN 182
T+Q +S + ++ + N + I+ + + + S+ E + ++ + + + D+
Sbjct: 80 TLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST 139
Query: 183 QVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPL 238
+ +L ++ + L ++ M + + AL++L + + ++ P
Sbjct: 140 MCRDYVLDCNILPPLLQLFSKQN--RLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 67.4 bits (164), Expect = 7e-13
Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 8/221 (3%)
Query: 16 MMVNVGAELEKIIKTLKE-NQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL 74
++ A +E I+ L NL + + LP L L+
Sbjct: 210 YVLQCNA-MEPILGLFNSNKPSLIRTATWTLSNLCRG--KKPQPDWSVVSQALPTLAKLI 266
Query: 75 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 134
D E A ++ + + +I L+ + H+S T VQ +L AV
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TLVQTPALRAVGN 325
Query: 135 LVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV 194
+V N+ + I L + S KE + ++C+ I+ + N + Q ++ ++
Sbjct: 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385
Query: 195 EQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRL 235
+ L+++ + + + A+++ + + R
Sbjct: 386 PPLVKLLEVA---EYKTKKEACWAISNASSGGLQRPDIIRY 423
Score = 60.4 bits (146), Expect = 1e-10
Identities = 31/221 (14%), Positives = 78/221 (35%), Gaps = 7/221 (3%)
Query: 10 LDALNSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLP 68
+ A + EL ++ + L ++ ++ + + ++ G +P
Sbjct: 75 VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILS-REHRPPIDVVIQAGVVP 133
Query: 69 VLQPLL-EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVK 127
L + E L+ AA + +I ++ D + L + + + V+ +
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQ 192
Query: 128 SLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQV 187
+++A+ + D+ + ++ + +L S K L+ + + ++ LC
Sbjct: 193 AIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 188 LLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTE 228
+ + + LI DTE A++ L E
Sbjct: 253 SVVSQALPTLAKLIYSM---DTETLVDACWAISYLSDGPQE 290
Score = 48.9 bits (116), Expect = 9e-07
Identities = 23/197 (11%), Positives = 73/197 (37%), Gaps = 10/197 (5%)
Query: 16 MMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL 74
+++V +++++ L E+ + + A+ N+ + + G LP L+ LL
Sbjct: 294 AVIDVRI-PKRLVELLSHESTLVQTPALRAVGNIVT--GNDLQTQVVINAGVLPALRLLL 350
Query: 75 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSC 134
++ A T+++I N +I + + L+ +E + ++ +A+S
Sbjct: 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY-KTKKEACWAISN 409
Query: 135 LVR---DNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSM 191
+ ++ + + L ++ +++ + + + K+
Sbjct: 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE--ARG 467
Query: 192 GMVEQMCVLIDIEDALD 208
+ + I+ ++
Sbjct: 468 LNINENADFIEKAGGME 484
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 64.6 bits (158), Expect = 2e-12
Identities = 32/220 (14%), Positives = 89/220 (40%), Gaps = 7/220 (3%)
Query: 14 NSMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQP 72
+ + G+EL ++ + L ++ ++ + + + G LP L
Sbjct: 4 SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSD--GNEQIQAVIDAGALPALVQ 61
Query: 73 LLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAV 132
LL + ++ A +++I +I L L+ + N + ++L+A+
Sbjct: 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWAL 120
Query: 133 SCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMG 192
S + E ++ I L++ + S E+++ ++ + ++ + + N+ Q ++ G
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 180
Query: 193 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSL 232
+ + L+ + ++ + L AL+++ E +
Sbjct: 181 ALPALVQLLSSP---NEQILQEALWALSNIASGGNEQKQA 217
Score = 40.4 bits (95), Expect = 3e-04
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 37 QKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNN 96
++ AL N++ + + G LP L LL + ++ A +++I
Sbjct: 155 LQEAL-WALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211
Query: 97 PFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLV 136
+ + + L L H N +Q ++ A+ L
Sbjct: 212 NEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQ 250
Score = 32.6 bits (75), Expect = 0.096
Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 16 MMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLL 74
+++ GA L +++ L N+ + AL N++ + + G L L+ L
Sbjct: 175 AVIDAGA-LPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQ 231
Query: 75 EGSDPELRWRAAETVADIVQN 95
+ +++ A E + + +
Sbjct: 232 SHENEKIQKEAQEALEKLQSH 252
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 65.6 bits (160), Expect = 3e-12
Identities = 27/199 (13%), Positives = 71/199 (35%), Gaps = 13/199 (6%)
Query: 44 ALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 103
A+ NL +Y + L +P L LL D + +AA V + + +
Sbjct: 1 AVVNLINY-----QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 55
Query: 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK 163
++ ++ ++++ ++ + + L + E L K G L++ + S
Sbjct: 56 RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPV 114
Query: 164 EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223
+ ++ + + L K + G ++ ++ + + + + L L
Sbjct: 115 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ---KMVALLNKTNVKFLAITTDCLQILA 171
Query: 224 KDSTEAQSLCR----LEPL 238
+ E++ + + L
Sbjct: 172 YGNQESKLIILASGGPQAL 190
Score = 62.1 bits (151), Expect = 4e-11
Identities = 29/206 (14%), Positives = 60/206 (29%), Gaps = 12/206 (5%)
Query: 33 ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 92
+Q C+ L NLSD G L L LL D + AA ++++
Sbjct: 239 PSQRLVQNCLWTLRNLSD-----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293
Query: 93 VQNNPFSQNFIIQTDFLNLLLTSIEHDSNT-TVQVKSLYAVSCLVRDN---EECLKEFIK 148
NN ++ + Q + L+ ++ + + ++ A+ L + E
Sbjct: 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 353
Query: 149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALD 208
G V+++ + +IK+ + L G + L+ +
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP---RLVQLLVRAH 410
Query: 209 TEMNEHLLSALASLIKDSTEAQSLCR 234
+
Sbjct: 411 QDTQRRTSMGGTQQQFVEGVRMEEIV 436
Score = 58.6 bits (142), Expect = 5e-10
Identities = 27/215 (12%), Positives = 70/215 (32%), Gaps = 11/215 (5%)
Query: 17 MVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE 75
+ G + ++K L I L NL + GGL + LL
Sbjct: 97 IFKSGG-IPALVKMLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRLAGGLQKMVALLN 153
Query: 76 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 135
++ + + + + N S+ I+ + L+ + + + + + L
Sbjct: 154 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213
Query: 136 VRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 195
++ G L + ++LV + + L + + + G++
Sbjct: 214 SV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLG 269
Query: 196 QMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230
L+ + + D + L++L ++ + +
Sbjct: 270 ---TLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301
Score = 37.1 bits (86), Expect = 0.005
Identities = 24/201 (11%), Positives = 59/201 (29%), Gaps = 31/201 (15%)
Query: 24 LEKIIKTLK--ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPEL 81
L ++K L + +G + NL+ + + G +P L LL + +
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP---LREQGAIPRLVQLLVRAHQDT 413
Query: 82 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE 141
+ R + +E + A+ L RD
Sbjct: 414 QRRTSMGGT---------------------QQQFVEGVRMEEIVEGCTGALHILARD-VH 451
Query: 142 CLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLI 201
+ + ++ + S E + + ++ L D + + + G + L+
Sbjct: 452 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-AEAIEAEGATAPLTELL 510
Query: 202 DIEDALDTEMNEHLLSALASL 222
+ + + + L +
Sbjct: 511 HSRNE---GVATYAAAVLFRM 528
Score = 34.0 bits (78), Expect = 0.053
Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 5/114 (4%)
Query: 22 AELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPEL 81
++ ++ + C GAL L+ + + +P+ LL +
Sbjct: 420 GGTQQQFVEGVRMEEIVEGCTGALHILA---RDVHNRIVIRGLNTIPLFVQLLYSPIENI 476
Query: 82 RWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 135
+ AA + ++ Q+ ++ I L + N V + + +
Sbjct: 477 QRVAAGVLCELAQDKEAAE-AIEAEGATAPLTELLHSR-NEGVATYAAAVLFRM 528
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 64.2 bits (156), Expect = 1e-11
Identities = 26/189 (13%), Positives = 69/189 (36%), Gaps = 9/189 (4%)
Query: 55 IDYAND-FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLL 113
I+Y +D L +P L LL D + +AA V + + + ++ ++
Sbjct: 3 INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 62
Query: 114 TSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFL 173
++++ ++ + + L + E L K G L++ + S + ++ +
Sbjct: 63 RTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 121
Query: 174 IACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLC 233
+ L K + G ++ ++ + + + + L L + E++ +
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQ---KMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178
Query: 234 R----LEPL 238
+ L
Sbjct: 179 LASGGPQAL 187
Score = 62.3 bits (151), Expect = 3e-11
Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 9/178 (5%)
Query: 33 ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 92
+Q C+ L NLSD G L L LL D + AA ++++
Sbjct: 236 PSQRLVQNCLWTLRNLSD-----AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290
Query: 93 VQNNPFSQNFIIQTDFL-NLLLTSIEHDSNTTVQVKSLYAVSCLV---RDNEECLKEFIK 148
NN ++ + Q + L+ T + + ++ A+ L ++ E
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350
Query: 149 RDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDA 206
G V+++ + +IK+ + L G + ++ L+
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 408
Score = 57.6 bits (139), Expect = 1e-09
Identities = 27/215 (12%), Positives = 70/215 (32%), Gaps = 11/215 (5%)
Query: 17 MVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLE 75
+ G + ++K L I L NL + GGL + LL
Sbjct: 94 IFKSGG-IPALVKMLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRLAGGLQKMVALLN 150
Query: 76 GSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 135
++ + + + + N S+ I+ + L+ + + + + + L
Sbjct: 151 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210
Query: 136 VRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVE 195
++ G L + ++LV + + L + + + G++
Sbjct: 211 SV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLG 266
Query: 196 QMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQ 230
L+ + + D + L++L ++ + +
Sbjct: 267 ---TLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298
Score = 49.2 bits (117), Expect = 7e-07
Identities = 32/219 (14%), Positives = 68/219 (31%), Gaps = 29/219 (13%)
Query: 24 LEKIIKTLK--ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPEL 81
L ++K L + +G + NL+ + G +P L LL + +
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRNLA---LCPANHAPLREQGAIPRLVQLLVRAHQDT 410
Query: 82 RWRAAETVADIVQNNPFSQNFIIQ--TDFLNLLLTSIE------------------HDSN 121
+ R + I++ T L++L + +
Sbjct: 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI 470
Query: 122 TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 181
+Q + + L +D +E + + L + S+ E + + ++ + D
Sbjct: 471 ENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529
Query: 182 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALA 220
Q + LS+ + L E E + L A
Sbjct: 530 PQDYKKRLSVELTSS---LFRTEPMAWNETADLGLDIGA 565
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.1 bits (155), Expect = 1e-11
Identities = 39/278 (14%), Positives = 85/278 (30%), Gaps = 63/278 (22%)
Query: 38 KDICIGALDNLSDYVCSID--YANDFLKMGGLPVLQP-----LLEGSDPELRWRAAETVA 90
KDI +V + D D K +L ++ D +
Sbjct: 19 KDI---LSVFEDAFVDNFDCKDVQDMPK----SILSKEEIDHIIMSKDAVSGTL---RLF 68
Query: 91 DIVQNNPFS--QNFI---IQTDFLNLLLTSIEHDSNTTVQVKSLY--AVSCLVRDNEECL 143
+ + Q F+ ++ ++ L++ I+ + + +Y L DN+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 144 KEFIKR-DGFSVLLRCIQS-KKEKLVI--------KSCFLIACLCTDNNQVK----QVL- 188
K + R + L + + + K V+ K+ + +C ++
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFW 186
Query: 189 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKL-NFI 247
L++ EM + LL + ++ S +L +++ +L +
Sbjct: 187 LNLKNCN--------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 248 KEKHAGNEVYHKELEHVNS--VLTEVFEEDSLEEFDHQ 283
K K + N VL V + F+
Sbjct: 239 KSK-----------PYENCLLVLLNVQNAKAWNAFNLS 265
Score = 56.0 bits (134), Expect = 6e-09
Identities = 44/284 (15%), Positives = 83/284 (29%), Gaps = 85/284 (29%)
Query: 18 VNVGAELEKIIKTLKENQDQKDICI------G----ALDNLSDYVCSIDYANDF----LK 63
V+ K+ + L E + K++ I G ALD Y + DF L
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY--KVQCKMDFKIFWLN 188
Query: 64 MGG-------LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQN--------FIIQTDF 108
+ L +LQ LL DP R+ D N + + +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRS-----DHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 109 LNLLLTSIEHD-SNTTVQVKSLYAVSC--LV--RDN----------------EECLKEFI 147
N LL + + N + + +SC L+ R +
Sbjct: 244 ENCLL--VLLNVQNAKA-WNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 148 KRDGFSVLLRCIQSKKEKL----------VIKSCFLIACLCTDN----NQVKQVLLS-MG 192
+ S+LL+ + + + L + +IA D + K V +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLT 356
Query: 193 MVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST-EAQSLCRL 235
+ + + + L+ + L+ + L +
Sbjct: 357 TIIESSL-----NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Score = 37.9 bits (87), Expect = 0.003
Identities = 38/305 (12%), Positives = 85/305 (27%), Gaps = 87/305 (28%)
Query: 1 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDIC---------IGALDNLSDY 51
++ + D + S+++ L+ + L ++ I + D
Sbjct: 291 LDHHSMTLTPDEVKSLLLKY---LDCRPQDLPR-----EVLTTNPRRLSIIAES--IRDG 340
Query: 52 VCSIDYANDFLKMGGLPVLQPLLEGS----DP-ELRWRAAETVADIVQNNPFSQNFIIQT 106
+ + D K L ++E S +P E R + F
Sbjct: 341 LATWDN----WKHVNCDKLTTIIESSLNVLEPAEYR-----------------KMF---D 376
Query: 107 DFLNLLLTSI-EHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEK 165
S+ ++ + SL + D + + K S++ + Q K+
Sbjct: 377 RL------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---SLVEK--QPKEST 425
Query: 166 LVIKSCFLIACLCTDNNQV--KQVLLSMGMVEQMCV-------------------LIDIE 204
+ I S +L + +N + ++ + + L +IE
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 205 DALDTEMNEHLLSAL----ASLIKDSTEAQSLCRLEPL--NLKFKLNFIKEKHAGNEVYH 258
+ + + DST + + LKF +I + E
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 259 KELEH 263
+
Sbjct: 546 NAILD 550
Score = 29.4 bits (65), Expect = 1.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 251 HAGNEVYHKELEHVNSVLTEVFEEDSLEEFDHQD 284
H E E ++ + VFE+ ++ FD +D
Sbjct: 6 HMDFET--GEHQYQYKDILSVFEDAFVDNFDCKD 37
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 59.9 bits (144), Expect = 2e-10
Identities = 36/199 (18%), Positives = 73/199 (36%), Gaps = 8/199 (4%)
Query: 33 ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 92
E+ + +++ L+ + + ++ GG+ L + + + A + +A I
Sbjct: 507 ESHNSQELIARVLNAVCGLK---ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI 563
Query: 93 V--QNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRD 150
N S + D + LL ++ D +SL A++ L NE + IK
Sbjct: 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ 623
Query: 151 GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTE 210
G S + + L + + L + +K + V+ + +L + ED E
Sbjct: 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDE---E 680
Query: 211 MNEHLLSALASLIKDSTEA 229
ALA + S +
Sbjct: 681 TATACAGALAIITSVSVKC 699
Score = 47.1 bits (111), Expect = 4e-06
Identities = 20/113 (17%), Positives = 38/113 (33%)
Query: 65 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTV 124
+ L L E D E A +A I + I+ +L ++ + + V
Sbjct: 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAV 724
Query: 125 QVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 177
Q + + + ++ EE K+ + D +L Q + CL
Sbjct: 725 QHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777
Score = 32.9 bits (74), Expect = 0.13
Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 21/224 (9%)
Query: 24 LEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELR 82
L+ I+ +++ Q+ + L S L G+ +L+ L + +R
Sbjct: 292 LQMILAMATTDDELQQRVACECLIAA----SSKKDKAKALCEQGVDILKRLYHSKNDGIR 347
Query: 83 WRAAETVADIVQNNPFSQNFIIQTDFLNLLLTS------IEHDSNTTVQVKSLYAVSCLV 136
RA + + D L L I+ + ++ + ++ L
Sbjct: 348 VRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLT 407
Query: 137 RDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 196
D E K + L+ + + + LC + + + + + +
Sbjct: 408 LDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKF 467
Query: 197 MCVLIDIEDALDTE----------MNEHLLSALASLIKDSTEAQ 230
I E LD NE + +AL +L K +
Sbjct: 468 AKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNS 511
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 47.5 bits (112), Expect = 2e-06
Identities = 28/237 (11%), Positives = 81/237 (34%), Gaps = 21/237 (8%)
Query: 21 GAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDP 79
G + K ++ L +++ + I + + ++GG+ L LL +
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTC--FQDESAKQQVYQLGGICKLVDLLRSPNQ 58
Query: 80 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN 139
++ AA + ++V + ++ + + + ++ + N +Q + + L +
Sbjct: 59 NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118
Query: 140 EECLKEFIKRDGFSVLLRCI----------------QSKKEKLVIKSCFLIACLCTDNNQ 183
E LKE + D VL + + ++ + + L + +
Sbjct: 119 E--LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176
Query: 184 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNL 240
+ + G+++ + + A ++ + + + L S + L
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233
Score = 28.3 bits (62), Expect = 3.8
Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 2/76 (2%)
Query: 14 NSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL 73
N + V L ++D + NL A + L + L
Sbjct: 370 NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA--SQPQLAKQYFSSSMLNNIINL 427
Query: 74 LEGSDPELRWRAAETV 89
S AA +
Sbjct: 428 CRSSASPKAAEAARLL 443
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 45.2 bits (107), Expect = 1e-05
Identities = 22/177 (12%), Positives = 56/177 (31%), Gaps = 12/177 (6%)
Query: 65 GGLPVLQPLLEGSDPELRWRAAETVADI-VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTT 123
G + L L+ +L+ A + ++ + + S+ + + + L+ +
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 186
Query: 124 VQVKSLYAVSCLVRDNEECLKEFIKRDGF-----SVLLRCIQSKKEKLVIKSCFLIACL- 177
L A+ L E + DG L Q+ ++ ++ +
Sbjct: 187 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246
Query: 178 --CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSL 232
N +Q+L ++ L+ + + + L +L + + Q
Sbjct: 247 SLIATNEDHRQILRENNCLQ---TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 300
Score = 36.4 bits (84), Expect = 0.008
Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Query: 41 CIGALDNLSDYVCSI-DYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS 99
G L N+S + + D+ + L L L+ + A T+ ++ NP
Sbjct: 238 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD 297
Query: 100 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE 141
Q + +++L ++ H + + + S A+ L+ +
Sbjct: 298 QEALWDMGAVSMLK-NLIHSKHKMIAMGSAAALRNLMANRPA 338
Score = 36.0 bits (83), Expect = 0.011
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 15 SMMVNVGAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL 73
++ L+ +++ LK + G L NLS + MG + +L+ L
Sbjct: 257 QILRENNC-LQTLLQHLKSHSLTIVSNACGTLWNLS--ARNPKDQEALWDMGAVSMLKNL 313
Query: 74 LEGSDPELRWRAAETVADIVQNNP 97
+ + +A + +++ N P
Sbjct: 314 IHSKHKMIAMGSAAALRNLMANRP 337
Score = 33.7 bits (77), Expect = 0.065
Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 16/196 (8%)
Query: 45 LDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFII 104
L+ + Y C + G+ + + A + + + ++ +
Sbjct: 13 LEQIRAY-CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMN 70
Query: 105 QTD----FLNLL------LTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGF-S 153
+ LL + T++ + A++ L + G
Sbjct: 71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 130
Query: 154 VLLRCIQSKKEKLVIKSCFLIACLCTDNNQV-KQVLLSMGMVEQMCVLIDIEDALDTEMN 212
L+ ++S+ E L ++ L + K+ L +G V+ + +
Sbjct: 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC--ALEVKKESTL 188
Query: 213 EHLLSALASLIKDSTE 228
+ +LSAL +L TE
Sbjct: 189 KSVLSALWNLSAHCTE 204
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 45.0 bits (106), Expect = 2e-05
Identities = 22/177 (12%), Positives = 55/177 (31%), Gaps = 12/177 (6%)
Query: 65 GGLPVLQPLLEGSDPELRWRAAETVADIVQN-NPFSQNFIIQTDFLNLLLTSIEHDSNTT 123
G + L L+ +L+ A + ++ + S+ + + + L+ +
Sbjct: 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302
Query: 124 VQVKSLYAVSCLVRDNEECLKEFIKRDGF-----SVLLRCIQSKKEKLVIKSCFLIACL- 177
L A+ L E + DG L Q+ ++ ++ +
Sbjct: 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362
Query: 178 --CTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSL 232
N +Q+L ++ L+ + + + L +L + + Q
Sbjct: 363 SLIATNEDHRQILRENNCLQ---TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 416
Score = 35.7 bits (82), Expect = 0.012
Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Query: 41 CIGALDNLSDYV-CSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFS 99
G L N+S + + D+ + L L L+ + A T+ ++ NP
Sbjct: 354 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD 413
Query: 100 QNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKE 145
Q + +++L ++ H + + + S A+ L+ + K+
Sbjct: 414 QEALWDMGAVSMLK-NLIHSKHKMIAMGSAAALRNLMANRPAKYKD 458
Score = 34.9 bits (80), Expect = 0.025
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 33 ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 92
+ G L NLS + MG + +L+ L+ + +A + ++
Sbjct: 391 HSLTIVSNACGTLWNLS--ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448
Query: 93 VQNNP 97
+ N P
Sbjct: 449 MANRP 453
Score = 28.8 bits (64), Expect = 2.1
Identities = 32/203 (15%), Positives = 73/203 (35%), Gaps = 16/203 (7%)
Query: 20 VGAELEKIIKTLK--ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGS 77
+G ++E + L D+ D L +S S D + G LP+L LL G+
Sbjct: 27 LGTKVEMVYSLLSMLGTHDKDD-MSRTLLAMSS---SQDSCISMRQSGCLPLLIQLLHGN 82
Query: 78 DPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVR 137
D + + + L+ ++ S D +++ L+ + +
Sbjct: 83 DKDSVLLGNSRGSKEARAR------ASAA--LHNIIHSQPDDKRGRREIRVLHLLEQIRA 134
Query: 138 DNEECLKEFIKRD-GFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQ 196
E C + + G + + E + + ++ L D + + + +G ++
Sbjct: 135 YCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQA 193
Query: 197 MCVLIDIEDALDTEMNEHLLSAL 219
+ L+ ++ + N+H L
Sbjct: 194 IAELLQVDCEMYGLTNDHYSITL 216
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 44.7 bits (105), Expect = 2e-05
Identities = 41/228 (17%), Positives = 84/228 (36%), Gaps = 25/228 (10%)
Query: 20 VGAE-LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYAND------------------ 60
VG + +E +I L+ ++ +I ALD L + + + +
Sbjct: 57 VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI 116
Query: 61 FLKM-GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPF-SQNFIIQTDFLNLLLTSIEH 118
F+K + +L LLE D +RW + + +++ Q I+ + L +
Sbjct: 117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176
Query: 119 DSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK---KEKLVIKSCF-LI 174
DS ++ + + L R N K + F LL I + +V++ C L+
Sbjct: 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILL 236
Query: 175 ACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASL 222
L +NN + +++M ++ D + + + L
Sbjct: 237 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLML 284
Score = 35.9 bits (82), Expect = 0.015
Identities = 38/259 (14%), Positives = 85/259 (32%), Gaps = 33/259 (12%)
Query: 59 NDFLKMGGLPVLQPLL--EGSDPELRWRAAETVADIVQNNPFSQNFIIQTD--------- 107
+ G L L +L G ++ TV+++++ +Q++ +
Sbjct: 305 KAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPA 364
Query: 108 FLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKR-------------DGFSV 154
+ LL++ + ++ LY C + N++ E + +
Sbjct: 365 IVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQL 424
Query: 155 LLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMV-----EQMCVLIDIEDALDT 209
L + S + +A +N K+ LL + + + +L + L
Sbjct: 425 LCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQ 484
Query: 210 EMNEH----LLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVN 265
LL L + + + A + N+ F I E E + L +
Sbjct: 485 GSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALL 544
Query: 266 SVLTEVFEEDSLEEFDHQD 284
++ F ++SLE + +
Sbjct: 545 LGISIYFNDNSLETYMKEK 563
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 41.1 bits (95), Expect = 3e-04
Identities = 19/142 (13%), Positives = 49/142 (34%), Gaps = 13/142 (9%)
Query: 33 ENQDQKDICIGALDNLS--DYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVA 90
+ + GA+ NL + + + L + LL + A+ +
Sbjct: 321 KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALR 380
Query: 91 DIVQNNPFSQN-FIIQTDFLNLLLTSIEHDSNTTVQVKS-------LYAVSCLVRDNEEC 142
++ + ++N +I + L+ ++ + S L ++ ++ +N E
Sbjct: 381 NLAVD---ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437
Query: 143 LKEFIKRDGFSVLLRCIQSKKE 164
K+ + G L+ +S
Sbjct: 438 AKKLRETQGIEKLVLINKSGNR 459
Score = 39.9 bits (92), Expect = 7e-04
Identities = 16/133 (12%), Positives = 48/133 (36%), Gaps = 8/133 (6%)
Query: 65 GGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTV 124
LP + +L ++ AA + + N + + + + +L+ ++H V
Sbjct: 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEV 106
Query: 125 QVKSLYAVSCL----VRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTD 180
+ A L +++ DG L+R ++ ++ + + +
Sbjct: 107 HL---GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163
Query: 181 NNQVKQVLLSMGM 193
++ +K ++ +
Sbjct: 164 HDSIKMEIVDHAL 176
Score = 31.8 bits (71), Expect = 0.23
Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 6/141 (4%)
Query: 23 ELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPEL 81
EL ++I L K L +L + D K+ G+PVL LL+ E+
Sbjct: 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLC--YRNDKVKTDVRKLKGIPVLVGLLDHPKKEV 106
Query: 82 RWRAAETVADI-VQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNE 140
A + +I + ++ I D + L+ + + + + L +
Sbjct: 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166
Query: 141 ECLKEFIKRDGFSVLLRCIQS 161
+K I L +
Sbjct: 167 --IKMEIVDHALHALTDEVII 185
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.002
Identities = 32/173 (18%), Positives = 53/173 (30%), Gaps = 44/173 (25%)
Query: 64 MG-GL----PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH 118
MG L Q + +D + ++ DIV NNP + LT I
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN-------------LT-IHF 1676
Query: 119 DSNTTVQVKSLYAVSCL--VRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIAC 176
+++ Y+ + D + ++ K +S+K L
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL-----SA--- 1728
Query: 177 LCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNE----HLL---SALASL 222
T Q L+ E D++ + H L +ALASL
Sbjct: 1729 --TQFTQPALTLMEKAAFE------DLKSKGLIPADATFAGHSLGEYAALASL 1773
Score = 36.2 bits (83), Expect = 0.012
Identities = 33/196 (16%), Positives = 64/196 (32%), Gaps = 67/196 (34%)
Query: 85 AAETVADIVQNN---P---FS---------QNFIIQTDFLNLLLTSIEHDS----NTTVQ 125
+ D ++NN P S Q+++ +T N L + + N
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT---NSHLPAGKQVEISLVNGAKN 376
Query: 126 V------KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSK----KEKLVIKSCFL-I 174
+ +SLY ++ +R K D QS+ + KL + FL +
Sbjct: 377 LVVSGPPQSLYGLNLTLRK----AKAPSGLD---------QSRIPFSERKLKFSNRFLPV 423
Query: 175 AC------LCTDNNQVKQVLLSMGMVEQMCVLIDIEDAL-----DTEMNEHLLSALASLI 223
A L ++ + + L+ V + +D + DT L S+
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNN------VSFNAKD-IQIPVYDTFDGSDLRVLSGSIS 476
Query: 224 KDSTEAQSLCRLEPLN 239
+ + + R P+
Sbjct: 477 ERIVDC--IIR-LPVK 489
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 35.8 bits (82), Expect = 0.008
Identities = 21/163 (12%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 126
L L LL+ + A + I + + L L + ++ +
Sbjct: 34 LKKLIELLDDDLWTVVKNAISIIMVIAKTRE-----DLYEPMLKKLFSLLKKSEAIPLTQ 88
Query: 127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 186
+ A + ++ E +K I VL + EK I + + + N +
Sbjct: 89 EIAKAFGQMAKEKPELVKSMIP-----VLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143
Query: 187 VLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA 229
++ + + + + E L+ + ++ ++S +
Sbjct: 144 SIVRD--------FMSMLSSKNREDKLTALNFIEAMGENSFKY 178
Score = 35.4 bits (81), Expect = 0.014
Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 19/136 (13%)
Query: 6 RGFLLDALNSMMVNVGAELEKIIKTLK-----ENQDQKDICIGALDNLSDYVCSIDYAND 60
+ + AL + + I++ +N++ K + ++ + + S Y N
Sbjct: 124 KINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--SFKYVNP 181
Query: 61 FLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDS 120
FL P + LL D +R A E + + N + +I+ L + D+
Sbjct: 182 FL-----PRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELN-DT 229
Query: 121 NTTVQVKSLYAVSCLV 136
++ V +S L+
Sbjct: 230 SSLVNKTVKEGISRLL 245
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 35.7 bits (82), Expect = 0.009
Identities = 15/146 (10%), Positives = 53/146 (36%), Gaps = 7/146 (4%)
Query: 17 MVNVGAELEKIIKTLK---ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPL 73
++ LE+ + L+ + + + + ++ G+ L L
Sbjct: 3 NADMEMTLERAVSMLEADHMLPSRISAAATFIQHEC--FQKSEARKRVNQLRGILKLLQL 60
Query: 74 LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS 133
L+ + +++ + ++V + ++ + + + + LL ++ + + + +
Sbjct: 61 LKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLW 120
Query: 134 CLVRDNEECLKEFIKRDGFSVLLRCI 159
L +++ LK + + L I
Sbjct: 121 NLSSNDK--LKNLMITEALLTLTENI 144
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 35.9 bits (82), Expect = 0.015
Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 8/161 (4%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 126
+P L L +R T++ + LL I DSN VQ
Sbjct: 402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL-DSNKRVQE 460
Query: 127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 186
+ A + L + L ++ L+ + K ++ L + T + V
Sbjct: 461 AACSAFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLL---ILYDAIGTLADSVGH 516
Query: 187 VLLSMGMVEQ-MCVLIDIEDALDTEMNE--HLLSALASLIK 224
L ++ M LI + L E + LL L+S+
Sbjct: 517 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVAT 557
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like
repeats, chaperone-protein transport complex; 2.31A
{Saccharomyces cerevisiae}
Length = 315
Score = 34.1 bits (77), Expect = 0.039
Identities = 20/155 (12%), Positives = 50/155 (32%), Gaps = 14/155 (9%)
Query: 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMG-GLPVLQPLLEGSDPELR 82
I + + D + ++ + + L L E LR
Sbjct: 28 RNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLSLNENLPLTLR 87
Query: 83 WRAAETVADIVQNNPFSQNFIIQT--DFLNLLLTSIE------HDSNTTVQVKSLYAVSC 134
+ + ++NNP FI ++ +F + ++ ++ H S+ + + L ++
Sbjct: 88 ELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNE 147
Query: 135 LVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIK 169
L + E + VL + + ++
Sbjct: 148 LPVTS-----EDLPIYSTVVLQNVYERNNKDKQLQ 177
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 34.5 bits (79), Expect = 0.039
Identities = 15/193 (7%), Positives = 68/193 (35%), Gaps = 20/193 (10%)
Query: 52 VCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNL 111
+ + L + L L+ + LR+ A E++ + + + +
Sbjct: 316 LIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEF---SHEAVKTHIET 372
Query: 112 LLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSC 171
++ +++ + + +V+ +++ + + + ++ + +L +++ + +
Sbjct: 373 VINALKTERDVSVRQRAVDLLYAMC--DRSNAQQIVAE-----MLSYLETADYSIREEIV 425
Query: 172 FLIACLC----TDNNQVKQVLLSMGMVEQMCVLIDIEDAL------DTEMNEHLLSALAS 221
+A L D +L++ + V ++ + ++ + +
Sbjct: 426 LKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFE 485
Query: 222 LIKDSTEAQSLCR 234
++ ++L +
Sbjct: 486 ALQAPACHENLVK 498
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 33.7 bits (77), Expect = 0.068
Identities = 28/189 (14%), Positives = 63/189 (33%), Gaps = 25/189 (13%)
Query: 57 YANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNP-FSQNFIIQTDFLNLLLTS 115
+ L++ + +L L +D +R+ A ++ VQ + Q ++ ++ L
Sbjct: 305 KSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRH--RSTIVDCL--- 359
Query: 116 IEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIA 175
D + +++ +++ LV N ++ +K LL + S + + I
Sbjct: 360 --KDLDVSIKRRAMELSFALV--NGNNIRGMMKE-----LLYFLDSCEPEFKADCASGIF 410
Query: 176 CLC----TDNNQVKQVLLSMGMVEQMCVLIDIEDAL------DTEMNEHLLSALASLIKD 225
++ + V D L EM+ + + L I
Sbjct: 411 LAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILG 470
Query: 226 STEAQSLCR 234
Q L +
Sbjct: 471 DYSQQPLVQ 479
Score = 28.3 bits (63), Expect = 3.7
Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 14/121 (11%)
Query: 44 ALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 103
AL L + S + D ++ LL+ S+ LR +AA +++ P
Sbjct: 127 ALCTLG-CMGSSEMCRDLA-----GEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMF 180
Query: 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIK--RDGFSVLLRCIQS 161
+ ++ ++ N V S+ ++ + + + L F K +L I S
Sbjct: 181 LPA------TKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMS 234
Query: 162 K 162
Sbjct: 235 G 235
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 32.4 bits (72), Expect = 0.18
Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 8/162 (4%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 126
+ L + SD + R+ A + +Q + + + + ++L + D N VQ
Sbjct: 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL-EDKNGEVQN 66
Query: 127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQ 186
++ + LV +E E I L + S KE+L S + + +
Sbjct: 67 LAVKCLGPLVSKVKEYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122
Query: 187 VLLSMGMVEQM---CVLIDIEDALDTEMNEHLLSALASLIKD 225
V + + I D + L +A ++
Sbjct: 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 31.6 bits (72), Expect = 0.30
Identities = 18/113 (15%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 126
L L+ L+ S+P + A +++I +++P S + +N LLT++ ++ Q+
Sbjct: 162 LDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQI 220
Query: 127 KSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCT 179
L +S ++ + +R + + +V+ + ++
Sbjct: 221 FILDCLSNYNPKDDREAQSICER-----VTPRLSHANSAVVLSAVKVLMKFLE 268
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding
domain, ubiquitin-superfold, armadillo repeats,
actin-binding, coiled coil; 2.30A {Homo sapiens}
Length = 339
Score = 30.6 bits (68), Expect = 0.59
Identities = 12/85 (14%), Positives = 36/85 (42%)
Query: 118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 177
+ S+ +SL+++ + +++++ + EF+ +G S L+R + + L
Sbjct: 128 YSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQL 187
Query: 178 CTDNNQVKQVLLSMGMVEQMCVLID 202
+ + V+ ++ + L
Sbjct: 188 MLFVDGMLGVVAHSDTIQWLYTLCA 212
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 29.6 bits (67), Expect = 0.92
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
+ L L+ D +R AA + I
Sbjct: 83 VEPLIKALKDEDGWVRQSAAVALGQI 108
Score = 28.9 bits (65), Expect = 1.4
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
+ L L+ D +R AA+ + +I
Sbjct: 145 VEPLIKALKDEDGWVRQSAADALGEI 170
Score = 28.9 bits (65), Expect = 1.4
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
+ L L+ D +R AA+ + I
Sbjct: 52 VEPLIKALKDEDAWVRRAAADALGQI 77
Score = 28.5 bits (64), Expect = 2.0
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
+ + L+ +R AA + I
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGKI 46
Score = 26.6 bits (59), Expect = 8.3
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
++ L E R A +
Sbjct: 176 RAAMEKLAETGTGFARKVAVNYLETH 201
Score = 26.6 bits (59), Expect = 9.5
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
+ L L+ D +R AA + +I
Sbjct: 114 VEPLIKALKDEDWFVRIAAAFALGEI 139
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 29.6 bits (67), Expect = 0.96
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
+ L L+ D +R AA + I
Sbjct: 78 VEPLIKALKDEDGWVRQSAAVALGQI 103
Score = 28.4 bits (64), Expect = 1.8
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
+ + L+ +R AA + I
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALGKI 41
Score = 27.7 bits (62), Expect = 3.3
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
+ L L+ D +R AA+ + I
Sbjct: 47 VEPLIKALKDEDAWVRRAAADALGQI 72
Score = 27.7 bits (62), Expect = 3.6
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
+ L L+ D +R AA+ + +I
Sbjct: 140 VEPLIKALKDEDGWVRQSAADALGEI 165
Score = 26.5 bits (59), Expect = 8.3
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
++ L E R A +
Sbjct: 171 RAAMEKLAETGTGFARKVAVNYLETH 196
Score = 26.5 bits (59), Expect = 9.2
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
+ L L+ D +R AA + +I
Sbjct: 109 VEPLIKALKDEDWFVRIAAAFALGEI 134
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 29.4 bits (66), Expect = 1.3
Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQV 126
+ + + R A + I + + N+L +D + V+
Sbjct: 56 VRLAIEFCSDKNYIRRDIGAFILGQIKICKK------CEDNVFNILNNMALNDKSACVRA 109
Query: 127 KSLYA 131
++ +
Sbjct: 110 TAIES 114
Score = 28.6 bits (64), Expect = 2.1
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 68 PVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVK 127
+ L +R A E+ A + NP I++ D +T V+
Sbjct: 94 ILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVE------QSQITAFDKSTNVRRA 147
Query: 128 SLYAVSCL 135
+ +A+S +
Sbjct: 148 TAFAISVI 155
Score = 28.6 bits (64), Expect = 2.4
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
L LL+ + R +A +
Sbjct: 25 DDELFRLLDDHNSLKRISSARVLQLR 50
Score = 27.5 bits (61), Expect = 5.9
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNP 97
+P+L LL+ + ++R AA + +N
Sbjct: 161 IPLLINLLKDPNGDVRNWAAFAININKYDNS 191
Score = 26.7 bits (59), Expect = 8.9
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
+L+ + E+R A ++
Sbjct: 194 RDCFVEMLQDKNEEVRIEAIIGLSYR 219
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 28.4 bits (64), Expect = 1.4
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
+ L LLE +R AA ++ I
Sbjct: 75 VEPLIKLLEDDSGFVRSGAARSLEQI 100
Score = 28.0 bits (63), Expect = 2.0
Identities = 2/26 (7%), Positives = 9/26 (34%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
L + + +R + ++ +
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSRM 39
Score = 27.6 bits (62), Expect = 2.6
Identities = 4/21 (19%), Positives = 6/21 (28%)
Query: 67 LPVLQPLLEGSDPELRWRAAE 87
++ L E R A
Sbjct: 106 RAAMEKLAETGTGFARKVAVN 126
Score = 26.1 bits (58), Expect = 8.5
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADI 92
L L D +R AA + +
Sbjct: 44 FEPLLESLSNEDWRIRGAAAWIIGNF 69
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 28.8 bits (64), Expect = 2.3
Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 36/207 (17%)
Query: 24 LEKIIKTLKENQDQ-KDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELR 82
+ + QD + + + A N++ + D + P L+ E +R
Sbjct: 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM-----PTLRQAAEDKSWRVR 259
Query: 83 WRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEEC 142
+ A+ ++ + I +TD + ++ D V+ + +
Sbjct: 260 YMVADKFTELQKAVG---PEITKTDLVPAFQNLMK-DCEAEVRAAASHK----------- 304
Query: 143 LKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQ-VKQVLLSMGMVEQMCVLI 201
+KEF + I S+ I C L +D NQ VK L S ++ + ++
Sbjct: 305 VKEFCENLSADCRENVIMSQ-----ILPCIK--ELVSDANQHVKSALAS--VIMGLSPIL 355
Query: 202 DIEDALDTEMNEHLLSALASLIKDSTE 228
++ + EHLL + +KD
Sbjct: 356 GKDNTI-----EHLLPLFLAQLKDECP 377
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 28.6 bits (63), Expect = 2.6
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEH--DSNTTV 124
LP + L+ +++ A + I + S I L ++ + + V
Sbjct: 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAES---IDPQQHLPGVVQACLIGLQDHPKV 469
Query: 125 QVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS 161
+ + LV E I +++ I +
Sbjct: 470 ATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGA 506
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 27.7 bits (61), Expect = 3.9
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 9 LLDALNSMMVNVGAE--LEKIIKTLKE-NQDQKDICIGALDNLSDYVCSIDYANDFLKMG 65
L +A++++ + E E I+++L N K + LK+
Sbjct: 118 LREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLL 177
Query: 66 GLPVLQPLLEGSDPELRWRAAETVADIVQ 94
L L DP +R +AE + +++
Sbjct: 178 -TTSLVKTLNEPDPTVRDSSAEALGTLIK 205
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein,
chromosome segregation, DNA-binding, helix-turn-helix;
2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Length = 230
Score = 27.5 bits (62), Expect = 4.1
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 30/100 (30%)
Query: 1 MNEANRGFL---LDALNSMMVNVGAELEKI-IKTLKENQDQ--KDICIGALDNLSDYVCS 54
M+ G L L+AL + GA + ++ + +++ N Q K +L L+D S
Sbjct: 1 MSRKPSG-LGRGLEAL---LPKTGAGVVRLPLASIRPNPRQPRKRFAEESLKELAD---S 53
Query: 55 IDYANDFLKMGGLPVLQPLL---EGSDPEL-----RWRAA 86
I + G +LQPLL +G EL R+RAA
Sbjct: 54 I-------REKG--LLQPLLVRPQGDGYELVAGERRYRAA 84
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 27.8 bits (61), Expect = 4.2
Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 18/172 (10%)
Query: 70 LQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSL 129
L L D + A +++ + +P ++ + +D L T ++N +K L
Sbjct: 51 LMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETNPAALIKVL 108
Query: 130 YAVSCLV---RDNEECLKEFIKRDGFSVLLRCIQSKKEKL--VIKSCFLIACLCTDNNQV 184
+V RD E + + LL K+ + ++ + ++
Sbjct: 109 ELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKM 168
Query: 185 KQVLLS----------MGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDS 226
+LL + + I + + + +A + D
Sbjct: 169 TPMLLDALKSKNARQRSECLLVIEYYIT-NAGISPLKSLSVEKTVAPFVGDK 219
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein,
unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Length = 240
Score = 27.6 bits (60), Expect = 4.5
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 67 LPVLQPLLEGSDPELRWRAAETVADIVQNNP 97
+ + L E +R + DI + P
Sbjct: 180 IRRIADLKEDVSEYVRKSVGNALRDISKKFP 210
>3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding
protein; 1.94A {Thermococcus thioreducens}
Length = 128
Score = 26.6 bits (58), Expect = 4.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 125 QVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCF 172
Q++S + LV N++ L++F+K ++LLR I S + K+V K F
Sbjct: 4 QIRSKKTLWELVGRNKDALRDFLKEHRGTILLRDIAS-EHKVVYKPIF 50
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 27.3 bits (60), Expect = 5.9
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 49 SDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDF 108
+ + ++ + + VLQ LR+ A T+ + +P +
Sbjct: 271 ASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP----SAVTA-- 324
Query: 109 LNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEE 141
NL L ++ D+N ++ + A++ L++ E
Sbjct: 325 CNLDLENLVTDANRSI---ATLAITTLLKTGSE 354
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,050,623
Number of extensions: 231494
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 110
Length of query: 285
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 192
Effective length of database: 4,105,140
Effective search space: 788186880
Effective search space used: 788186880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)