RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy355
(285 letters)
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 264
Score = 90.5 bits (223), Expect = 4e-22
Identities = 85/231 (36%), Positives = 129/231 (55%), Gaps = 4/231 (1%)
Query: 43 GALDNLSDYVCSIDYANDFLKMGGLPVL-QPLLEGSDPELRWRAAETVADIVQNNPFSQN 101
GAL+ L+D ++D A DF ++ G+ +L LE LRWRAA+ + QN Q
Sbjct: 36 GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE 95
Query: 102 FIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQS 161
++ L LL ++ D+ TV+VK+L+A+SCLVR+ E L +F++ DGFSVL+R +Q
Sbjct: 96 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 155
Query: 162 KKEKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALAS 221
+ +KL +KS FL+ L + + K L SMGMV+Q+ L+ E + +EH+L AL S
Sbjct: 156 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS---PFHEHVLGALCS 212
Query: 222 LIKDSTEAQSLCRLEPLNLKFKLNFIKEKHAGNEVYHKELEHVNSVLTEVF 272
L+ D + CR L L+ L + +E Y +ELE +L F
Sbjct: 213 LVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 263
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 51.0 bits (120), Expect = 6e-08
Identities = 29/199 (14%), Positives = 70/199 (35%), Gaps = 6/199 (3%)
Query: 44 ALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFI 103
A+ NL +Y + A +P L LL D + +AA V + + +
Sbjct: 1 AVVNLINYQDDAELAT-----RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 55
Query: 104 IQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKK 163
++ ++ ++++ ++ + + L + E L K G L++ + S
Sbjct: 56 RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPV 114
Query: 164 EKLVIKSCFLIACLCTDNNQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLI 223
+ ++ + + L K + G +++M L++ + + L LA
Sbjct: 115 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174
Query: 224 KDSTEAQSLCRLEPLNLKF 242
++S +
Sbjct: 175 QESKLIILASGGPQALVNI 193
Score = 41.8 bits (96), Expect = 6e-05
Identities = 31/250 (12%), Positives = 84/250 (33%), Gaps = 6/250 (2%)
Query: 11 DALNSMMVNVGAELEKIIKTLK--ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLP 68
+A ++ + I++T++ + + G L NLS + K GG+P
Sbjct: 48 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS---HHREGLLAIFKSGGIP 104
Query: 69 VLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKS 128
L +L + + A T+ +++ + ++ + L ++ + N +
Sbjct: 105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAIT 163
Query: 129 LYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVL 188
+ L N+E + G L+ +++ + ++ + + + + + K +
Sbjct: 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 223
Query: 189 LSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEAQSLCRLEPLNLKFKLNFIK 248
+ G ++ + + + + L L+ + L L +
Sbjct: 224 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVV 283
Query: 249 EKHAGNEVYH 258
AG
Sbjct: 284 TCAAGILSNL 293
Score = 34.5 bits (77), Expect = 0.012
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 41 CIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQ 100
C GAL L+ + + +P+ LL ++ AA + ++ Q+ +
Sbjct: 439 CTGALHILA---RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE-AA 494
Query: 101 NFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCL 135
I L + H N V + + +
Sbjct: 495 EAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRM 528
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 42.8 bits (100), Expect = 3e-05
Identities = 15/187 (8%), Positives = 67/187 (35%), Gaps = 20/187 (10%)
Query: 58 ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE 117
+ L + L L+ + LR+ A E++ + + + + ++ +++
Sbjct: 314 SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK---THIETVINALK 370
Query: 118 HDSNTTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACL 177
+ + +V+ +++ + + + ++ + +L +++ + + +A L
Sbjct: 371 TERDVSVRQRAVDLLYAMC--DRSNAQQIVAE-----MLSYLETADYSIREEIVLKVAIL 423
Query: 178 C----TDNNQVKQVLLSMGMVEQMCVLIDIEDAL------DTEMNEHLLSALASLIKDST 227
D +L++ + V ++ + ++ + + ++
Sbjct: 424 AEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPA 483
Query: 228 EAQSLCR 234
++L +
Sbjct: 484 CHENLVK 490
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 42.5 bits (98), Expect = 3e-05
Identities = 26/224 (11%), Positives = 78/224 (34%), Gaps = 21/224 (9%)
Query: 21 GAELEKIIKTLK-ENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDP 79
G + K ++ L +++ + I + + ++GG+ L LL +
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRSPNQ 58
Query: 80 ELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDN 139
++ AA + ++V + ++ + + + ++ + N +Q + + L +
Sbjct: 59 NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118
Query: 140 EECLKEFIKRDGFSVLLRCI----------------QSKKEKLVIKSCFLIACLCTDNNQ 183
LKE + D VL + + ++ + + L + +
Sbjct: 119 --ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176
Query: 184 VKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDST 227
+ + G+++ + + A ++ + + + L S
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY 220
Score = 26.7 bits (57), Expect = 3.9
Identities = 10/89 (11%), Positives = 22/89 (24%), Gaps = 5/89 (5%)
Query: 1 MNEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYAND 60
+ + + + + + L ++D + NL A
Sbjct: 360 RHPLLHRVMGNQVFPEVTRL---LTSHTGNTSNSEDILSSACYTVRNLM--ASQPQLAKQ 414
Query: 61 FLKMGGLPVLQPLLEGSDPELRWRAAETV 89
+ L + L S AA +
Sbjct: 415 YFSSSMLNNIINLCRSSASPKAAEAARLL 443
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 41.3 bits (96), Expect = 1e-04
Identities = 29/228 (12%), Positives = 83/228 (36%), Gaps = 10/228 (4%)
Query: 2 NEANRGFLLDALNSMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDF 61
N R + + + V+ E + + L++ +D + + A
Sbjct: 96 NPLIRALAVRTMGCIRVDKITEY--LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 153
Query: 62 LKMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSN 121
G L L+ L+ S+P + A +++I +++P S + +N LLT++ ++
Sbjct: 154 EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECT 212
Query: 122 TTVQVKSLYAVSCLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 181
Q+ L +S ++ + +R + + +V+ + ++
Sbjct: 213 EWGQIFILDCLSNYNPKDDREAQSICER-----VTPRLSHANSAVVLSAVKVLMKFLELL 267
Query: 182 NQVKQVLLSMGMVEQMCVLIDIEDALDTEMNEHLLSALASLIKDSTEA 229
+ +++++ + + + E+ L + +++ E
Sbjct: 268 PKDSDYYNM--LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEI 313
Score = 32.1 bits (72), Expect = 0.079
Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 4/126 (3%)
Query: 24 LEKIIKTLKENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRW 83
+ +++ LKE + D+ + C+I + + L L++ +
Sbjct: 348 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERC--VSTLLDLIQTKVNYVVQ 405
Query: 84 RAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVSCLVRDNEECL 143
A + DI + P II T L L S++ + + + + + +E L
Sbjct: 406 EAIVVIRDIFRKYPNKYESIIAT--LCENLDSLDEPDARAAMIWIVGEYAERIDNADELL 463
Query: 144 KEFIKR 149
+ F++
Sbjct: 464 ESFLEG 469
>d1mlaa2 d.58.23.1 (A:128-197) Probable ACP-binding domain of
malonyl-CoA ACP transacylase {Escherichia coli [TaxId:
562]}
Length = 70
Score = 29.4 bits (66), Expect = 0.083
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 15 SMMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVCS-----IDYANDFLKMGG--- 66
+M +G + I K +E + + + ++ V + ++ A K G
Sbjct: 4 AMAAIIGLDDASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKAAGAKR 63
Query: 67 ---LPV 69
LPV
Sbjct: 64 ALPLPV 69
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 31.7 bits (70), Expect = 0.092
Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Query: 32 KENQDQKDICIGALDNLSDYVCSIDYANDFLKMGGLPVLQPLLEGSDPELRWRAAETVAD 91
K + + A+ N + +++ + G + L LL D ++ + +++
Sbjct: 325 KADFKTQKEAAWAITNYTSG-GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 383
Query: 92 IVQ------NNPFSQNFIIQTDFLNLLLTSIEHDSN 121
I Q I + L+ + H++
Sbjct: 384 IFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENE 419
Score = 30.9 bits (68), Expect = 0.17
Identities = 22/147 (14%), Positives = 54/147 (36%), Gaps = 9/147 (6%)
Query: 63 KMGGLPVLQPLLEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNT 122
G L V LL ++ A T+++I ++ + L+ + ++
Sbjct: 270 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV-GVLSKADF 328
Query: 123 TVQVKSLYAVSCLVRD-NEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDN 181
Q ++ +A++ E + + L+ + +K K++ I+ +
Sbjct: 329 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF--- 385
Query: 182 NQVKQVLLSMGMVEQMCVLIDIEDALD 208
Q +G E++ ++I+ LD
Sbjct: 386 ----QAAEKLGETEKLSIMIEECGGLD 408
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 30.5 bits (67), Expect = 0.26
Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 8/154 (5%)
Query: 74 LEGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIEHDSNTTVQVKSLYAVS 133
+ SD + R+ A + +Q + + + + ++L +E D N VQ ++ +
Sbjct: 12 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLG 70
Query: 134 CLVRDNEECLKEFIKRDGFSVLLRCIQSKKEKLVIKSCFLIACLCTDNNQVKQVLLSMGM 193
LV +E E I L + S KE+L S + + +
Sbjct: 71 PLVSKVKEYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN 126
Query: 194 VEQMCV--LID-IEDALDTEMNEHLLSALASLIK 224
V + L I D + L +A ++
Sbjct: 127 VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 160
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter
vinelandii [TaxId: 354]}
Length = 233
Score = 25.8 bits (56), Expect = 5.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 67 LPVLQPLLEGSDPELRWRAAE 87
+ L PL+ SD +R A
Sbjct: 68 VEALTPLIRDSDEVVRRAVAY 88
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 26.2 bits (56), Expect = 5.7
Identities = 18/139 (12%), Positives = 41/139 (29%), Gaps = 15/139 (10%)
Query: 16 MMVNVGAELEKIIKTLKENQDQKDICIGALDNLSDYVC-SIDYANDFLKMGGLPVLQPLL 74
+++ + K A+ N S D + G + L LL
Sbjct: 367 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 426
Query: 75 EGSDPELRWRAAETVADIVQNNPFSQNFIIQTDFLNLLLTSIE------------HDSNT 122
E +D + + + +I++ + + +N IE + N
Sbjct: 427 EIADNRIIEVTLDALENILKMGE--ADKEARGLNINENADFIEKAGGMEKIFNCQQNEND 484
Query: 123 TVQVKSLYAVSCLVRDNEE 141
+ K+ + + E+
Sbjct: 485 KIYEKAYKIIETYFGEEED 503
>d1ylla1 b.82.1.17 (A:2-196) Hypothetical protein PA5104
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 195
Score = 25.6 bits (56), Expect = 6.4
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 83 WRAAETVADIVQNNPFSQ 100
WR + +AD+ ++ FS
Sbjct: 39 WRLS--IADVGESGGFSG 54
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Streptomyces
coelicolor A3(2) [TaxId: 100226]}
Length = 253
Score = 25.6 bits (55), Expect = 7.8
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 58 ANDFLKMGGLPVLQPLLEGSDPELRWRAAETVADI 92
+++ L L + + P ++ A +T D+
Sbjct: 208 VTAIIEVCPGGTLTGLAKRALPGVKTLALKTPDDL 242
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia
coli [TaxId: 562]}
Length = 276
Score = 25.6 bits (54), Expect = 8.2
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 70 LQPLLEGSDPELRWRAAETVADI 92
L LL+ + R +A +
Sbjct: 24 LFRLLDDHNSLKRISSARVLQLR 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 975,596
Number of extensions: 43741
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 30
Length of query: 285
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,254,276
Effective search space: 252109476
Effective search space used: 252109476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)