Query psy3552
Match_columns 92
No_of_seqs 110 out of 523
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 19:36:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02260 FATC: FATC domain; I 99.8 2.4E-21 5.1E-26 107.4 1.3 32 61-92 2-33 (33)
2 KOG0890|consensus 99.5 6.6E-15 1.4E-19 134.8 4.4 54 35-92 2329-2382(2382)
3 KOG0892|consensus 99.4 9.8E-14 2.1E-18 128.2 4.5 53 34-92 2754-2806(2806)
4 KOG0891|consensus 99.2 1.1E-11 2.4E-16 114.8 4.0 59 29-91 2282-2340(2341)
5 COG5032 TEL1 Phosphatidylinosi 99.0 4.6E-10 9.9E-15 103.8 5.0 82 7-92 2013-2105(2105)
6 KOG3365|consensus 92.9 0.073 1.6E-06 38.2 2.0 26 66-91 104-129 (145)
7 KOG0889|consensus 91.9 0.24 5.3E-06 49.3 4.7 26 67-92 3525-3550(3550)
8 KOG1861|consensus 65.2 4.1 8.9E-05 34.6 1.7 28 65-92 10-37 (540)
9 cd00896 PI3Kc_III Phosphoinosi 48.1 18 0.0004 28.9 2.8 74 10-91 273-349 (350)
10 KOG3110|consensus 45.6 7.2 0.00016 28.2 0.1 9 84-92 70-78 (153)
11 PF00915 Calici_coat: Calicivi 41.9 9.5 0.00021 30.2 0.3 11 79-89 97-107 (293)
12 cd05168 PI4Kc_III_beta Phospho 35.4 27 0.00058 27.3 1.9 46 36-90 242-287 (293)
13 PF06009 Laminin_II: Laminin D 34.5 12 0.00025 25.8 -0.3 24 66-89 93-119 (138)
14 PF01085 HH_signal: Hedgehog a 34.4 15 0.00033 26.8 0.3 21 2-23 122-142 (160)
15 COG4877 Uncharacterized protei 33.4 35 0.00076 21.2 1.8 17 60-76 28-44 (63)
16 COG3076 Uncharacterized protei 29.6 41 0.00089 23.6 1.8 26 64-92 87-112 (135)
17 PF00918 Gastrin: Gastrin/chol 29.6 40 0.00086 23.0 1.7 20 60-79 53-72 (116)
18 PF12637 TSCPD: TSCPD domain; 29.3 1.3E+02 0.0028 19.4 4.1 36 40-75 57-94 (95)
19 PHA01346 hypothetical protein 29.1 92 0.002 18.4 3.0 40 9-48 10-49 (53)
20 PF05205 COMPASS-Shg1: COMPASS 28.8 1.6E+02 0.0036 19.4 4.6 61 5-79 10-70 (106)
21 PF04340 DUF484: Protein of un 28.2 50 0.0011 24.1 2.2 27 63-89 58-84 (225)
22 TIGR00291 RNA_SBDS rRNA metabo 27.6 1.8E+02 0.004 22.2 5.2 56 9-75 97-153 (231)
23 PF11007 CotJA: Spore coat ass 24.8 25 0.00055 19.4 0.1 11 81-91 3-13 (36)
24 PF08388 GIIM: Group II intron 23.4 47 0.001 19.9 1.1 12 81-92 28-39 (80)
25 PF14097 SpoVAE: Stage V sporu 22.9 1.7E+02 0.0036 21.8 4.0 44 33-77 9-52 (180)
26 COG4316 Uncharacterized protei 22.8 36 0.00079 24.1 0.5 28 3-30 14-41 (138)
27 PF12095 DUF3571: Protein of u 21.6 73 0.0016 20.9 1.7 44 36-80 26-69 (83)
28 PF01054 MMTV_SAg: Mouse mamma 21.4 83 0.0018 24.8 2.3 42 24-72 142-183 (313)
29 cd02975 PfPDO_like_N Pyrococcu 20.3 52 0.0011 21.3 0.9 29 63-91 6-36 (113)
No 1
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=99.82 E-value=2.4e-21 Score=107.37 Aligned_cols=32 Identities=53% Similarity=0.867 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHHhcCchhhHhhhcccccCC
Q psy3552 61 PLSVEGQTKKLIEEATSLDNLCQMYHGWAAYQ 92 (92)
Q Consensus 61 ~LSVe~QV~~LI~eATd~~NL~~MY~GW~P~~ 92 (92)
+|||++||+.||++|||++|||+||+||+||+
T Consensus 2 ~lsv~~qV~~LI~~At~~~nLa~my~GW~pw~ 33 (33)
T PF02260_consen 2 PLSVEQQVDELISEATDPENLARMYIGWMPWW 33 (33)
T ss_dssp -S-STHHHHHHHHHHHHHHHHHHHCTSS-TT-
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHhcchhccC
Confidence 68999999999999999999999999999996
No 2
>KOG0890|consensus
Probab=99.52 E-value=6.6e-15 Score=134.81 Aligned_cols=54 Identities=48% Similarity=0.833 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHhcCchhhHhhhcccccCC
Q psy3552 35 IAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEATSLDNLCQMYHGWAAYQ 92 (92)
Q Consensus 35 ~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eATd~~NL~~MY~GW~P~~ 92 (92)
.++.++.+|++||+|.... .+.||||+|||+.||+||||.+|||+||+||+||+
T Consensus 2329 e~~~~i~~i~~rlqG~~~~----~glPLSveGq~~~LI~eATseenL~~MYIGW~p~l 2382 (2382)
T KOG0890|consen 2329 EDRLVIGRIRGRLQGAMKV----DGLPLSVEGQASSLIEEATSEENLSEMYIGWMPFL 2382 (2382)
T ss_pred chHHHHhHHHHHHhccCcC----CCCccchhhHHHHHHHHhcCHHHHHHHHhhhhccC
Confidence 4489999999999997763 26999999999999999999999999999999996
No 3
>KOG0892|consensus
Probab=99.42 E-value=9.8e-14 Score=128.19 Aligned_cols=53 Identities=38% Similarity=0.526 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHhcCchhhHhhhcccccCC
Q psy3552 34 LIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEATSLDNLCQMYHGWAAYQ 92 (92)
Q Consensus 34 ~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eATd~~NL~~MY~GW~P~~ 92 (92)
..|.+++-|+++||.|.+.+ ..+||++||+.||+|||||.|||+||+||.||+
T Consensus 2754 ~~a~r~l~r~q~kl~g~e~g------~~~sVe~qv~~LIqqA~dpsnLs~~fpGW~a~~ 2806 (2806)
T KOG0892|consen 2754 RNAVRALMRAQRKLDGVEQG------TMLSVEAQVQELIQQATDPSNLSLMFPGWSAFQ 2806 (2806)
T ss_pred hHHHHHHHHHHHHhhhhhcc------ccccHHHHHHHHHHHhcCchhhhhhcCCCcCcC
Confidence 78999999999999999984 678999999999999999999999999999996
No 4
>KOG0891|consensus
Probab=99.19 E-value=1.1e-11 Score=114.79 Aligned_cols=59 Identities=37% Similarity=0.567 Sum_probs=54.0
Q ss_pred chhhhHHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHhcCchhhHhhhcccccC
Q psy3552 29 TCQVYLIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEATSLDNLCQMYHGWAAY 91 (92)
Q Consensus 29 ~~~~n~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eATd~~NL~~MY~GW~P~ 91 (92)
++..|..+-.++.|+..|++|+++.+ ..+|+|++||++||++||+++|||+.|+|||||
T Consensus 2282 ~e~~n~~~~~vl~~~~~kltg~~~~~----~~~l~v~~qv~~l~~qats~e~lc~~yigwcpf 2340 (2341)
T KOG0891|consen 2282 PEALNARAIQVLKRISDKLTGRDFVH----EEPLDVPEQVEKLIQQATSPENLCQCYIGWCPF 2340 (2341)
T ss_pred ccccChhhHHHHHhcccccceeeccC----cccCcHHHHHHHHHHhhcChHhhhcccccCCCC
Confidence 34457789999999999999999965 689999999999999999999999999999997
No 5
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=98.98 E-value=4.6e-10 Score=103.77 Aligned_cols=82 Identities=22% Similarity=0.222 Sum_probs=65.1
Q ss_pred chhhHHhhhhhhhhhhc----cc------Cccch-hhhHHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHh
Q psy3552 7 TSDQVRLTVCVLIRYQV----DL------TRCTC-QVYLIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEA 75 (92)
Q Consensus 7 ~~~~~~~~~~~~~~~~~----~~------~~~~~-~~n~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eA 75 (92)
|..-+|++.-.++.+-- || ..+.. ..+.++..+++|+..|+.|.+... ...++|++||+.||++|
T Consensus 2013 ~~~~LRk~~~~L~~~le~f~~d~l~~W~~~p~~~~~~~~~~~~v~~rf~~kl~~~~~~~----~~~l~I~~sv~~li~~a 2088 (2105)
T COG5032 2013 AFRALRKNADSLMNVLELFVRDPLIEWRRLPCFREIQNNEIVNVLERFRLKLSEKDAEK----FVDLLINKSVESLITQA 2088 (2105)
T ss_pred HHHHHhccHHHHHHHHHHHhcCcchhhhcCccccchHHHHHHHHHHHHHHHhhhhhhhh----hcCCcHHHHHHHHHHHH
Confidence 34557777666665443 32 22223 557888999999999999999853 47899999999999999
Q ss_pred cCchhhHhhhcccccCC
Q psy3552 76 TSLDNLCQMYHGWAAYQ 92 (92)
Q Consensus 76 Td~~NL~~MY~GW~P~~ 92 (92)
+|+.|||+||+|||||+
T Consensus 2089 ~d~~~L~~~yi~w~~f~ 2105 (2105)
T COG5032 2089 TDPFQLATMYIGWMPFW 2105 (2105)
T ss_pred cCHHHHHhhccccccCC
Confidence 99999999999999996
No 6
>KOG3365|consensus
Probab=92.94 E-value=0.073 Score=38.16 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCchhhHhhhcccccC
Q psy3552 66 GQTKKLIEEATSLDNLCQMYHGWAAY 91 (92)
Q Consensus 66 ~QV~~LI~eATd~~NL~~MY~GW~P~ 91 (92)
+|++.+|.||-+.=|+.+|-.-|.||
T Consensus 104 GqIEE~i~qa~~el~m~~k~~~wk~w 129 (145)
T KOG3365|consen 104 GQIEEVIEQAEAELNMGRKMFEWKPW 129 (145)
T ss_pred CchHHHHHHHHHHHHHHhhhhccccc
Confidence 89999999999999999999999998
No 7
>KOG0889|consensus
Probab=91.91 E-value=0.24 Score=49.31 Aligned_cols=26 Identities=42% Similarity=0.569 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCchhhHhhhcccccCC
Q psy3552 67 QTKKLIEEATSLDNLCQMYHGWAAYQ 92 (92)
Q Consensus 67 QV~~LI~eATd~~NL~~MY~GW~P~~ 92 (92)
-+-.||.+|+|+.|||||=+-|.||+
T Consensus 3525 t~~~lis~A~s~~nLaqmDp~w~pWl 3550 (3550)
T KOG0889|consen 3525 TVIDLISQATSPDNLAQMDPTWHPWL 3550 (3550)
T ss_pred cHHHHHHHhcChhhhhcCCccccccC
Confidence 47789999999999999999999996
No 8
>KOG1861|consensus
Probab=65.21 E-value=4.1 Score=34.62 Aligned_cols=28 Identities=21% Similarity=-0.008 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCchhhHhhhcccccCC
Q psy3552 65 EGQTKKLIEEATSLDNLCQMYHGWAAYQ 92 (92)
Q Consensus 65 e~QV~~LI~eATd~~NL~~MY~GW~P~~ 92 (92)
.-|+..-|+||.-..|-++||+||.||.
T Consensus 10 ~p~~~~~~s~~~~~AN~Aq~~~q~~~y~ 37 (540)
T KOG1861|consen 10 VPMETGANSEAWKKANEAQMKIQGGMYK 37 (540)
T ss_pred CchhhhhhHHhhccccHHHHHhccCccc
Confidence 3578889999999999999999999973
No 9
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=48.13 E-value=18 Score=28.87 Aligned_cols=74 Identities=11% Similarity=0.212 Sum_probs=46.2
Q ss_pred hHHhhhhhhhhhhcccCccc-hhhhHHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHhcCc--hhhHhhhc
Q psy3552 10 QVRLTVCVLIRYQVDLTRCT-CQVYLIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEATSL--DNLCQMYH 86 (92)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~n~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eATd~--~NL~~MY~ 86 (92)
.+|++...++..-.-+..+. ..-+..+..++..+++||.-.... -....++..||++|.+. ..+--+|+
T Consensus 273 ~lR~~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~--------~ea~~~~~~lI~~s~~~~~t~~~d~~h 344 (350)
T cd00896 273 ILRKSANLILNLFSLMVDANIPDIALDPDKAILKVQEKFRLDLSD--------EEAIKHFQNLINDSVNALFPVVVDRLH 344 (350)
T ss_pred HHHhCHHHHHHHHHHHcCCCCcccccCHHHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45666555544322222211 112224677899999999843321 13467899999999877 47888888
Q ss_pred ccccC
Q psy3552 87 GWAAY 91 (92)
Q Consensus 87 GW~P~ 91 (92)
.|+.|
T Consensus 345 ~~aq~ 349 (350)
T cd00896 345 AWAQY 349 (350)
T ss_pred HHHhh
Confidence 88876
No 10
>KOG3110|consensus
Probab=45.65 E-value=7.2 Score=28.16 Aligned_cols=9 Identities=44% Similarity=1.003 Sum_probs=7.0
Q ss_pred hhcccccCC
Q psy3552 84 MYHGWAAYQ 92 (92)
Q Consensus 84 MY~GW~P~~ 92 (92)
|=+||.|||
T Consensus 70 mSIGwNP~Y 78 (153)
T KOG3110|consen 70 MSIGWNPYY 78 (153)
T ss_pred EEcccCccc
Confidence 447999987
No 11
>PF00915 Calici_coat: Calicivirus coat protein; InterPro: IPR004005 Bovine calicivirus is a positive-stranded ssRNA viruses that cause gastroenteritis []. The calicivirus genome contains two open reading frames, ORF1 and ORF2 [, ]. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity. The regions of the poly-protein in which these activities lie are similar to proteins produced by the picornaviruses [, ]. ORF2 encodes a structural protein []. This signature finds ORF2, the structural coat protein. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely those classified as small round structured viruses (SRSVs) and those classed as non-SRSVs. Rabbit hemorrhagic disease virus (RHDV) which causes a highly contagious disease of wild and domestic rabbits belongs to the family Caliciviridae []. The capsid protein self assembles to form an icosahedral capsid with a T=3 symmetry. It is about 38nm in diameter and consists of 180 capsid proteins. The capsid encapsulates the genomic RNA and VP2 proteins and attaches the virion to target cells by binding histo-blood group antigens present on gastroduodenal epithelial cells. The Shell domain (S domain) contains elements essential for the formation of the icosahedron. The Protruding domain (P domain) is divided into sub-domains P1 and P2. An hypervariable region in P2 is thought to play an important role in receptor binding and immune reactivity. This entry includes the Calicivirus coat protein as well as the non-structural polyprotein.; PDB: 2OBT_A 2OBS_A 2OBR_A 3D26_B 2ZL6_B 1IHM_B 3BY2_A 3BY1_A 2ZL7_A 2ZL5_A ....
Probab=41.88 E-value=9.5 Score=30.15 Aligned_cols=11 Identities=45% Similarity=1.202 Sum_probs=9.2
Q ss_pred hhhHhhhcccc
Q psy3552 79 DNLCQMYHGWA 89 (92)
Q Consensus 79 ~NL~~MY~GW~ 89 (92)
..|++||-||.
T Consensus 97 ~HLs~MY~GW~ 107 (293)
T PF00915_consen 97 AHLSRMYAGWS 107 (293)
T ss_dssp HHHHTTBSEEE
T ss_pred HHHHHHHhhhc
Confidence 35899999995
No 12
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=35.45 E-value=27 Score=27.30 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHhcCchhhHhhhccccc
Q psy3552 36 AKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEATSLDNLCQMYHGWAA 90 (92)
Q Consensus 36 a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eATd~~NL~~MY~GW~P 90 (92)
+...+..+++||.-... .-....++..||++|.+. .-.++|-+|+-
T Consensus 242 ~~~~i~~l~~r~~l~~s--------e~~a~~~~~~lI~~s~~~-~~t~~yD~~q~ 287 (293)
T cd05168 242 GEFTIQQLRDRFMLNLT--------EEQLEVFVDELINQSLDN-WRTRLYDKFQY 287 (293)
T ss_pred chHHHHHHHHHhCCCCC--------HHHHHHHHHHHHHHHHhc-hhHHHHHHHHH
Confidence 45678889999875332 224789999999999885 57778877754
No 13
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=34.48 E-value=12 Score=25.80 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=0.5
Q ss_pred HHHHHHHHHhcCchh---hHhhhcccc
Q psy3552 66 GQTKKLIEEATSLDN---LCQMYHGWA 89 (92)
Q Consensus 66 ~QV~~LI~eATd~~N---L~~MY~GW~ 89 (92)
.++..||.+|++-.| ....|-|+|
T Consensus 93 ~~IrelI~qAR~~An~IkV~m~F~g~s 119 (138)
T PF06009_consen 93 SRIRELIAQARDAANRIKVSMKFNGNS 119 (138)
T ss_dssp -------------------B-------
T ss_pred HHHHHHHHHHHHHHhheeeeeEECCCc
Confidence 578899999999887 456777776
No 14
>PF01085 HH_signal: Hedgehog amino-terminal signalling domain; InterPro: IPR000320 This domain identifies a group of sequences which belong to the MEROPS peptidase family C46 (clan CH). The type example is the hedgehog protein from Drosophila melanogaster (Fruit fly) which self-processes by a one-time cysteine dependent self cleavage. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation. members of this family are composed of two domains. These proteins are autocatalytically cleaved by the C-terminal domain IPR001767 from INTERPRO. This family is the N-terminal domain that is responsible for both local and long-range signalling activities. The structure of this domain is known [] and reveals a tetrahedrally coordinated zinc ion that appears to be structurally analogous to the zinc coordination sites of zinc hydrolases, such as thermolysin and carboxypeptidase A. This putative catalytic site represents a distinct activity from the autoprocessing activity that resides in the carboxy-terminal domain.; GO: 0007267 cell-cell signaling, 0007275 multicellular organismal development; PDB: 2WFR_A 3N1Q_B 3N1G_B 2WFQ_A 2WG3_A 3MXW_A 3M1N_B 3HO5_H 3K7H_B 3N1O_B ....
Probab=34.44 E-value=15 Score=26.83 Aligned_cols=21 Identities=48% Similarity=0.536 Sum_probs=17.2
Q ss_pred cccccchhhHHhhhhhhhhhhc
Q psy3552 2 VDLTGTSDQVRLTVCVLIRYQV 23 (92)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (92)
||+| |+|+-|.-...|.++||
T Consensus 122 vdit-tsd~d~~k~g~LarLAv 142 (160)
T PF01085_consen 122 VDIT-TSDRDRSKYGMLARLAV 142 (160)
T ss_dssp EEEE-ETT--GGGHHHHHHHHH
T ss_pred EEEE-eccccchhhHHHHHHHh
Confidence 7888 99999999999999988
No 15
>COG4877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.39 E-value=35 Score=21.24 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=14.1
Q ss_pred ccCCHHHHHHHHHHHhc
Q psy3552 60 IPLSVEGQTKKLIEEAT 76 (92)
Q Consensus 60 ~~LSVe~QV~~LI~eAT 76 (92)
..-|+..|++.|++||-
T Consensus 28 e~RSiNaQIE~lL~E~l 44 (63)
T COG4877 28 EFRSINAQIEILLKEAL 44 (63)
T ss_pred HHhhhhHHHHHHHHHHH
Confidence 34589999999999984
No 16
>COG3076 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.63 E-value=41 Score=23.64 Aligned_cols=26 Identities=27% Similarity=0.615 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCchhhHhhhcccccCC
Q psy3552 64 VEGQTKKLIEEATSLDNLCQMYHGWAAYQ 92 (92)
Q Consensus 64 Ve~QV~~LI~eATd~~NL~~MY~GW~P~~ 92 (92)
+..||..|+.-|-- -.-.|-||.-||
T Consensus 87 IDaQ~e~l~~L~Ek---~~~~YDGWGTY~ 112 (135)
T COG3076 87 IDAQVEQLMPLAEK---FDVEYDGWGTYF 112 (135)
T ss_pred HHHHHHHHHHHHHH---hCceecCceeec
Confidence 56888888876532 335688998876
No 17
>PF00918 Gastrin: Gastrin/cholecystokinin family; InterPro: IPR001651 Gastrin and cholecystokinin (CCK) are structurally and functionally related peptide hormones that function as hormonal regulators of various digestive processes and feeding behaviors. They are known to induce gastric secretion, stimulate pancreatic secretion, increase blood circulation and water secretion in the stomach and intestine, and stimulate smooth muscle contraction. Originally found in the gut, these hormones have since been shown to be present in various parts of the nervous system. Like many other active peptides they are synthesized as larger protein precursors that are enzymatically converted to their mature forms. They are found in several molecular forms due to tissue-specific post-translational processing. The biological activity of gastrin and CCK is associated with the last five C-terminal residues. One or two positions downstream, there is a conserved sulphated tyrosine residue. The amphibian caerulein skin peptide, the cockroach leukosulphakinin I and II (LSK) peptides, Drosophila melanogaster (Fruit fly) putative CCK-homologs Drosulphakinins I and II, cionin, a Gallus gallus (Chicken) gastrin/cholecystokinin-like peptide and cionin, a neuropeptide from the protochordate Ciona intestinalis belong to the same family.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=29.60 E-value=40 Score=23.00 Aligned_cols=20 Identities=0% Similarity=0.009 Sum_probs=13.4
Q ss_pred ccCCHHHHHHHHHHHhcCch
Q psy3552 60 IPLSVEGQTKKLIEEATSLD 79 (92)
Q Consensus 60 ~~LSVe~QV~~LI~eATd~~ 79 (92)
..........++|.++..+.
T Consensus 53 ~~~~~~~ll~r~L~~~~~~~ 72 (116)
T PF00918_consen 53 DRANLASLLARYLQQKRKPH 72 (116)
T ss_pred ccccHHHHHHHHHHhccccc
Confidence 45567777777777666555
No 18
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=29.27 E-value=1.3e+02 Score=19.43 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=26.5
Q ss_pred HHHHhhhccccccCCCC--CCcccCCHHHHHHHHHHHh
Q psy3552 40 LENIEGRLQGKVRSGGQ--NTTIPLSVEGQTKKLIEEA 75 (92)
Q Consensus 40 l~rV~~KL~G~~~~~~~--~~~~~LSVe~QV~~LI~eA 75 (92)
++.|-++|.|..+++.. ......|+.+|+-+.++++
T Consensus 57 ~~~ii~~L~gi~~~~~~~~~~~~~~S~~D~Ia~~L~~~ 94 (95)
T PF12637_consen 57 PEEIIDQLRGIRCGPSGTVGGSRVTSCPDAIAKALEEH 94 (95)
T ss_pred HHHHHHHhcCCCCCCCCccCCCccCcHHHHHHHHHHHh
Confidence 35677888888776531 2356679999999999875
No 19
>PHA01346 hypothetical protein
Probab=29.10 E-value=92 Score=18.43 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=25.6
Q ss_pred hhHHhhhhhhhhhhcccCccchhhhHHHHHHHHHHhhhcc
Q psy3552 9 DQVRLTVCVLIRYQVDLTRCTCQVYLIAKIFLENIEGRLQ 48 (92)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rV~~KL~ 48 (92)
..+|+-||-|-|..+.-.+.-.-..+..+.-+...-+||+
T Consensus 10 qelrllicelkrlrlsavsdpdfsqekihaeldsllrkls 49 (53)
T PHA01346 10 QELRLLICELKRLRLSAVSDPDFSQEKIHAELDSLLRKLS 49 (53)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHH
Confidence 4689999999888775555444444444555555555654
No 20
>PF05205 COMPASS-Shg1: COMPASS (Complex proteins associated with Set1p) component shg1
Probab=28.80 E-value=1.6e+02 Score=19.37 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=31.9
Q ss_pred ccchhhHHhhhhhhhhhhcccCccchhhhHHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHhcCch
Q psy3552 5 TGTSDQVRLTVCVLIRYQVDLTRCTCQVYLIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEATSLD 79 (92)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eATd~~ 79 (92)
-|+.|++|+- ||-.|.-. +.-..--.++..-|+..|.-.. ..+..-.+|+..||+.|-+..
T Consensus 10 ~G~FD~lRk~--~l~~~~~~-----~~~~~l~~~v~~~v~~~l~~~~-------~l~~~nk~k~~alI~~~i~rs 70 (106)
T PF05205_consen 10 QGHFDKLRKE--CLADFDTS-----PAYQNLRQRVEEIVESELERDP-------WLLSKNKGKARALIEGAIDRS 70 (106)
T ss_pred CCChHHHHHH--HHHhcccc-----HHHHHHHHHHHHHHHHHHhcCc-------ccCCcchHHHHHHHHHHHHHh
Confidence 4899999975 34433211 1222223344445555555211 233344577777777776655
No 21
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=28.25 E-value=50 Score=24.12 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHhcCchhhHhhhcccc
Q psy3552 63 SVEGQTKKLIEEATSLDNLCQMYHGWA 89 (92)
Q Consensus 63 SVe~QV~~LI~eATd~~NL~~MY~GW~ 89 (92)
..+.|.+.||..|.+.+.+-+.|+-|.
T Consensus 58 ~L~~~l~~Li~~Ar~Ne~~~~~~~~l~ 84 (225)
T PF04340_consen 58 QLEEQLEELIENARENEAIFQRLHRLV 84 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377999999999999999998887663
No 22
>TIGR00291 RNA_SBDS rRNA metabolism protein, SBDS family. This protein family, possibly universal in both archaea and eukaryotes, appears to be involved in (ribosomal) RNA metabolism. Mutations in the human ortholog are associated with Shwachman-Bodian-Diamond syndrome.
Probab=27.61 E-value=1.8e+02 Score=22.15 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=29.6
Q ss_pred hhHHhhhhhhh-hhhcccCccchhhhHHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHh
Q psy3552 9 DQVRLTVCVLI-RYQVDLTRCTCQVYLIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEA 75 (92)
Q Consensus 9 ~~~~~~~~~~~-~~~~~~~~~~~~~n~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eA 75 (92)
++.|+-|.-.+ +..++|.....-.......+|..++=.+. ..-|++.|+...|+.=
T Consensus 97 e~k~~~Ii~~Ia~~~VnP~T~~P~p~~rIE~Am~e~~~~id-----------p~k~ak~Qa~~vik~L 153 (231)
T TIGR00291 97 EKKRNQIINIISRNTINPQTKKPHPPTRIEKALEEAKVHID-----------IFKSVEEQVLEIVKAL 153 (231)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCCCCHHHHHHHHHhcCcCcC-----------CCCCHHHHHHHHHHHH
Confidence 34444444333 77777765544444445555544332221 2346778887777654
No 23
>PF11007 CotJA: Spore coat associated protein JA (CotJA); InterPro: IPR020256 cotJA is part of the cotJ operon, which encodes spore coat proteins. Interaction of CotJA with CotJC is required for the assembly of both CotJA and CotJC into the spore coat [].
Probab=24.79 E-value=25 Score=19.43 Aligned_cols=11 Identities=18% Similarity=0.449 Sum_probs=9.4
Q ss_pred hHhhhcccccC
Q psy3552 81 LCQMYHGWAAY 91 (92)
Q Consensus 81 L~~MY~GW~P~ 91 (92)
|++.|+.|.||
T Consensus 3 la~aYVp~Q~~ 13 (36)
T PF11007_consen 3 LAMAYVPFQPW 13 (36)
T ss_pred cCccccccCCC
Confidence 67889999988
No 24
>PF08388 GIIM: Group II intron, maturase-specific domain; InterPro: IPR013597 This region is found mainly in various bacterial and archaeal species, but a few members of this family are expressed by fungal and chlamydomonal species. It has been implicated in the binding of intron RNA during reverse transcription and splicing [].
Probab=23.37 E-value=47 Score=19.92 Aligned_cols=12 Identities=42% Similarity=0.947 Sum_probs=5.8
Q ss_pred hHhhhcccccCC
Q psy3552 81 LCQMYHGWAAYQ 92 (92)
Q Consensus 81 L~~MY~GW~P~~ 92 (92)
|..+-.||+-||
T Consensus 28 LN~~lrGW~nYy 39 (80)
T PF08388_consen 28 LNPILRGWANYY 39 (80)
T ss_pred HHHHHHHHHHhh
Confidence 344555555443
No 25
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=22.87 E-value=1.7e+02 Score=21.85 Aligned_cols=44 Identities=27% Similarity=0.246 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHhcC
Q psy3552 33 YLIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEATS 77 (92)
Q Consensus 33 n~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eATd 77 (92)
...|+++++.+..++-|+-...+..+..+||=++-| +||++|-.
T Consensus 9 D~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV-~lIk~a~~ 52 (180)
T PF14097_consen 9 DEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELV-ELIKQAPH 52 (180)
T ss_pred hHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHH-HHHHhCCC
Confidence 467899999999999998877666667778876555 56777653
No 26
>COG4316 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.81 E-value=36 Score=24.09 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=24.1
Q ss_pred ccccchhhHHhhhhhhhhhhcccCccch
Q psy3552 3 DLTGTSDQVRLTVCVLIRYQVDLTRCTC 30 (92)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (92)
|..||.|++---+-.++||++...+..+
T Consensus 14 ~f~gtpkv~es~s~~~~rFgvvFEddgE 41 (138)
T COG4316 14 DFVGTPKVLESFSKHIPRFGVVFEDDGE 41 (138)
T ss_pred HhcCChHHHHhhhhhccceeEEEeeCCc
Confidence 5689999999999999999998776544
No 27
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=21.55 E-value=73 Score=20.86 Aligned_cols=44 Identities=25% Similarity=0.236 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHhcCchh
Q psy3552 36 AKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEATSLDN 80 (92)
Q Consensus 36 a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eATd~~N 80 (92)
+.+.+...+.-|...+..+. +-..-=|+++|++.||.-|.+.+-
T Consensus 26 ~~Ell~~Lk~~L~~~~~LP~-dL~~~~s~~~qa~~Lldt~CeLei 69 (83)
T PF12095_consen 26 PEELLEKLKEWLQNQDDLPP-DLAKFSSVEEQAQYLLDTACELEI 69 (83)
T ss_dssp HHHHHHHHHHHHHHTTTS-H-HHHH---HHHHHHHHHHH---EEE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHhCCCHHHHHHHHHHhceeeec
Confidence 44455555555544222110 111234799999999999988763
No 28
>PF01054 MMTV_SAg: Mouse mammary tumour virus superantigen; InterPro: IPR001213 The Mouse mammary tumor virus (MMTV) is a milk-transmitted type B retrovirus. The superantigen (SAg) is encoded in the long terminal repeat [].
Probab=21.42 E-value=83 Score=24.75 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=22.3
Q ss_pred ccCccchhhhHHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHH
Q psy3552 24 DLTRCTCQVYLIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLI 72 (92)
Q Consensus 24 ~~~~~~~~~n~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI 72 (92)
.+++++.-.-+..-.-+.++++-+..+-. ..-|||+||+.|-
T Consensus 142 ~mlrnesl~fstiftqiqklEmgIenrK~-------~StsVEEQvq~l~ 183 (313)
T PF01054_consen 142 TMLRNESLPFSTIFTQIQKLEMGIENRKR-------RSTSVEEQVQGLP 183 (313)
T ss_pred HHHhccCcchHHHHHHHHHHHHHhhcccc-------ccccHHHHHhhcc
Confidence 33444433334444455555554443222 3358999998863
No 29
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=20.33 E-value=52 Score=21.33 Aligned_cols=29 Identities=7% Similarity=-0.096 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHhcCchhhHhhhc--ccccC
Q psy3552 63 SVEGQTKKLIEEATSLDNLCQMYH--GWAAY 91 (92)
Q Consensus 63 SVe~QV~~LI~eATd~~NL~~MY~--GW~P~ 91 (92)
+...|+...+.++.....-...|. -|||+
T Consensus 6 ~~~~~~~~~~~~~l~~~~~vvv~f~a~wC~~ 36 (113)
T cd02975 6 EDRKALKEEFFKEMKNPVDLVVFSSKEGCQY 36 (113)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEeCCCCCCC
Confidence 355677775555444444343443 37764
Done!