Query psy3552
Match_columns 92
No_of_seqs 110 out of 523
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 19:36:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w1n_A Phosphatidylinositol 3- 99.9 8.1E-23 2.8E-27 112.6 1.6 32 61-92 2-33 (33)
2 7cei_B Protein (colicin E7 imm 57.8 14 0.00048 26.9 4.3 42 41-91 108-158 (206)
3 2jb0_B Colicin E7; hydrolase/i 55.9 14 0.00049 25.1 3.9 49 41-91 33-83 (131)
4 1fr2_B Colicin E9; protein-pro 55.8 14 0.00049 25.1 3.9 49 41-91 36-86 (134)
5 2fc6_A Nuclear, target of EGR1 42.0 5.4 0.00019 23.1 0.0 15 77-91 18-34 (50)
6 3qfa_C Thioredoxin; protein-pr 33.7 11 0.00038 22.7 0.5 33 59-91 13-45 (116)
7 1ep7_A Thioredoxin CH1, H-type 28.9 10 0.00035 22.1 -0.3 30 62-91 7-38 (112)
8 3m9j_A Thioredoxin; oxidoreduc 28.3 12 0.00041 21.4 -0.0 30 62-91 5-34 (105)
9 1rbl_M Ribulose 1,5 bisphospha 25.1 37 0.0013 22.2 1.9 11 64-74 25-35 (109)
10 1xwb_A Thioredoxin; dimerizati 24.0 17 0.00058 20.7 0.1 29 63-91 6-34 (106)
11 2acm_B Mucin-1; auto-catalytic 22.5 29 0.00098 20.3 0.9 22 61-82 17-38 (55)
12 2krx_A ASL3597 protein; struct 22.1 29 0.00098 22.3 0.9 27 62-88 53-79 (94)
13 2x6h_A GH13170P, VPS34, phosph 21.3 25 0.00086 29.5 0.6 47 37-91 645-693 (696)
14 1wdd_S Ribulose bisphosphate c 21.2 38 0.0013 22.8 1.4 11 64-74 26-36 (128)
15 1svd_M Ribulose bisphosphate c 21.1 39 0.0013 22.1 1.4 11 64-74 27-37 (110)
16 2vim_A Thioredoxin, TRX; thior 20.9 16 0.00054 20.8 -0.5 28 64-91 6-33 (104)
17 2vm1_A Thioredoxin, thioredoxi 20.3 22 0.00074 20.7 -0.0 31 61-91 10-42 (118)
18 1elk_A Target of MYB1; superhe 20.0 46 0.0016 22.2 1.6 15 66-80 15-29 (157)
No 1
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=99.85 E-value=8.1e-23 Score=112.58 Aligned_cols=32 Identities=47% Similarity=0.867 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHhcCchhhHhhhcccccCC
Q psy3552 61 PLSVEGQTKKLIEEATSLDNLCQMYHGWAAYQ 92 (92)
Q Consensus 61 ~LSVe~QV~~LI~eATd~~NL~~MY~GW~P~~ 92 (92)
+|||++||++||+||||++|||+||+||+||+
T Consensus 2 ~lsv~~QV~~LI~~At~~~NL~~my~GW~p~w 33 (33)
T 1w1n_A 2 ELDVPEQVDKLIQQATSIERLCQHYIGWCPFW 33 (33)
T ss_dssp CSCSTHHHHHHHHHHHHHHHHHTTSCSCCTTC
T ss_pred CCCHHHHHHHHHHHhcCHHHHHHHhhhcccCC
Confidence 69999999999999999999999999999995
No 2
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=57.80 E-value=14 Score=26.94 Aligned_cols=42 Identities=26% Similarity=0.144 Sum_probs=26.4
Q ss_pred HHHhhhccccccCCCCCCcccCCHHHHHHH-HHHHh--------cCchhhHhhhcccccC
Q psy3552 41 ENIEGRLQGKVRSGGQNTTIPLSVEGQTKK-LIEEA--------TSLDNLCQMYHGWAAY 91 (92)
Q Consensus 41 ~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~-LI~eA--------Td~~NL~~MY~GW~P~ 91 (92)
..|.+||+|+.|.+. ..-=+. ...-| =++.|+.+|=-|+.||
T Consensus 108 sqIADKLRGR~F~sF---------D~FR~AFWkeVa~DPeLskQF~~~N~~~Mk~G~AP~ 158 (206)
T 7cei_B 108 DRIANKLRDKEFKSF---------DDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKAPK 158 (206)
T ss_dssp HHHHHHHTTCBCSSH---------HHHHHHHHHHHTTCTTTGGGSCHHHHHHHHTTCCCB
T ss_pred HHHHHHhcCCcCCCH---------HHHHHHHHHHHccCHHHHHHHhHHHHHHHHCCCCCC
Confidence 578899999998642 111111 11112 2457888999999998
No 3
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=55.86 E-value=14 Score=25.05 Aligned_cols=49 Identities=20% Similarity=0.135 Sum_probs=28.5
Q ss_pred HHHhhhccccccCCCCC--CcccCCHHHHHHHHHHHhcCchhhHhhhcccccC
Q psy3552 41 ENIEGRLQGKVRSGGQN--TTIPLSVEGQTKKLIEEATSLDNLCQMYHGWAAY 91 (92)
Q Consensus 41 ~rV~~KL~G~~~~~~~~--~~~~LSVe~QV~~LI~eATd~~NL~~MY~GW~P~ 91 (92)
..|.+||+|+.|.+.+. ...=+.|. +=..|++|= +..|+.+|=-|+.||
T Consensus 33 ~qIAdkLRGr~F~sFd~FR~afW~eVs-~DpeL~~QF-~~~N~~rmk~G~aP~ 83 (131)
T 2jb0_B 33 DRIANKLRDKEFKSFDDFRKKFWEEVS-KDPELSKQF-SRNNNDRMKVGKAPK 83 (131)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHH-HCHHHHTTS-CHHHHHHHHTTCCCB
T ss_pred HHHHHHHcCCcCCCHHHHHHHHHHHHh-cCHHHHHHh-hHHHHHHHHCCCCCC
Confidence 57899999999964210 00000111 112344443 355899999999998
No 4
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=55.80 E-value=14 Score=25.15 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=28.1
Q ss_pred HHHhhhccccccCCCCC--CcccCCHHHHHHHHHHHhcCchhhHhhhcccccC
Q psy3552 41 ENIEGRLQGKVRSGGQN--TTIPLSVEGQTKKLIEEATSLDNLCQMYHGWAAY 91 (92)
Q Consensus 41 ~rV~~KL~G~~~~~~~~--~~~~LSVe~QV~~LI~eATd~~NL~~MY~GW~P~ 91 (92)
..|.+||+|+.|.+.+. ...=+.|. +=..|++|= +..|+.+|=-|+.||
T Consensus 36 ~~IAdkLRGr~F~sFd~FR~afW~eVs-~DpeL~~QF-~~~N~~rmk~G~aP~ 86 (134)
T 1fr2_B 36 DRIADKLRDKEFKSFDDFRKAVWEEVS-KDPELSKNL-NPSNKSSVSKGYSPF 86 (134)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHH-HCHHHHTTS-CHHHHHHHHTTCCCB
T ss_pred HHHHHHhcCCcCCCHHHHHHHHHHHHh-cCHHHHHHh-CHHHHHHHHCCCCCC
Confidence 57899999999964210 00000010 001244332 347889999999998
No 5
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=42.00 E-value=5.4 Score=23.07 Aligned_cols=15 Identities=20% Similarity=0.842 Sum_probs=12.4
Q ss_pred CchhhHhhhc--ccccC
Q psy3552 77 SLDNLCQMYH--GWAAY 91 (92)
Q Consensus 77 d~~NL~~MY~--GW~P~ 91 (92)
...++|+-|. ||||.
T Consensus 18 ~~~~iC~~FSayGwCp~ 34 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPL 34 (50)
T ss_dssp CCSCBCSHHHHTCCCTT
T ss_pred cccchhhhccccccCCC
Confidence 5678999995 99994
No 6
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=33.74 E-value=11 Score=22.71 Aligned_cols=33 Identities=6% Similarity=0.108 Sum_probs=24.7
Q ss_pred cccCCHHHHHHHHHHHhcCchhhHhhhcccccC
Q psy3552 59 TIPLSVEGQTKKLIEEATSLDNLCQMYHGWAAY 91 (92)
Q Consensus 59 ~~~LSVe~QV~~LI~eATd~~NL~~MY~GW~P~ 91 (92)
.....-.++.+.+|+++.+.--+..-|.-|||+
T Consensus 13 ~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~ 45 (116)
T 3qfa_C 13 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGP 45 (116)
T ss_dssp CBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHH
T ss_pred ccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHH
Confidence 344556678888998887777777777788874
No 7
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=28.92 E-value=10 Score=22.10 Aligned_cols=30 Identities=3% Similarity=0.116 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHhc--CchhhHhhhcccccC
Q psy3552 62 LSVEGQTKKLIEEAT--SLDNLCQMYHGWAAY 91 (92)
Q Consensus 62 LSVe~QV~~LI~eAT--d~~NL~~MY~GW~P~ 91 (92)
++-.++.+.+|++|. +..-+..-|.-|||+
T Consensus 7 i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~ 38 (112)
T 1ep7_A 7 IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGP 38 (112)
T ss_dssp ECSHHHHHHHHHHHHHHTCCEEEEEECTTCHH
T ss_pred ecCHHHHHHHHHhhcccCCeEEEEEECCCCHH
Confidence 445677888888776 555566666678874
No 8
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=28.34 E-value=12 Score=21.41 Aligned_cols=30 Identities=7% Similarity=0.144 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHhcCchhhHhhhcccccC
Q psy3552 62 LSVEGQTKKLIEEATSLDNLCQMYHGWAAY 91 (92)
Q Consensus 62 LSVe~QV~~LI~eATd~~NL~~MY~GW~P~ 91 (92)
+.-.++.+.+|+++.+.--+..-|.-|||+
T Consensus 5 i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~ 34 (105)
T 3m9j_A 5 IESKTAFQEALDAAGDKLVVVDFSATWCGP 34 (105)
T ss_dssp CCSHHHHHHHHHHTTTSCEEEEEECTTCHH
T ss_pred cCCHHHHHHHHHhcCCCeEEEEEECCCChh
Confidence 445577778888776666666666678774
No 9
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=25.05 E-value=37 Score=22.17 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=9.4
Q ss_pred HHHHHHHHHHH
Q psy3552 64 VEGQTKKLIEE 74 (92)
Q Consensus 64 Ve~QV~~LI~e 74 (92)
+..||+.||++
T Consensus 25 I~kQI~Yll~q 35 (109)
T 1rbl_M 25 IAAQIEYMIEQ 35 (109)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHC
Confidence 67899999987
No 10
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=24.04 E-value=17 Score=20.70 Aligned_cols=29 Identities=7% Similarity=0.166 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHhcCchhhHhhhcccccC
Q psy3552 63 SVEGQTKKLIEEATSLDNLCQMYHGWAAY 91 (92)
Q Consensus 63 SVe~QV~~LI~eATd~~NL~~MY~GW~P~ 91 (92)
+-.++.+..+++..+.--+..-|.-|||+
T Consensus 6 ~~~~~~~~~l~~~~~~~~vv~f~~~~C~~ 34 (106)
T 1xwb_A 6 KDKADLDGQLTKASGKLVVLDFFATWCGP 34 (106)
T ss_dssp CSHHHHHHHHHHHTTSEEEEEEECTTCHH
T ss_pred CCHHHHHHHHHhcCCCEEEEEEECCcCHH
Confidence 33456666666655555555556667763
No 11
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=22.52 E-value=29 Score=20.32 Aligned_cols=22 Identities=36% Similarity=0.220 Sum_probs=18.7
Q ss_pred cCCHHHHHHHHHHHhcCchhhH
Q psy3552 61 PLSVEGQTKKLIEEATSLDNLC 82 (92)
Q Consensus 61 ~LSVe~QV~~LI~eATd~~NL~ 82 (92)
.-.|..|....+.+|.+.+||.
T Consensus 17 a~~vk~qf~q~~~~a~~~YnL~ 38 (55)
T 2acm_B 17 VHDVETQFNQYKTEAASRYNLT 38 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC
T ss_pred eehhhhhhhhhhhhccccccce
Confidence 3458899999999999999984
No 12
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=22.14 E-value=29 Score=22.33 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHhcCchhhHhhhccc
Q psy3552 62 LSVEGQTKKLIEEATSLDNLCQMYHGW 88 (92)
Q Consensus 62 LSVe~QV~~LI~eATd~~NL~~MY~GW 88 (92)
=|+++|++.||.-|.+.+-=--.|.=|
T Consensus 53 ~s~~~qaq~Lldt~CELei~pG~~lQW 79 (94)
T 2krx_A 53 DSLPAQAQHLIDTSCELDVGAGKYLQW 79 (94)
T ss_dssp CCHHHHHHHHHHHCCCEEEETTEEEEE
T ss_pred CCHHHHHHHHHHheeeeeeCCCCEEEE
Confidence 489999999999998876333333334
No 13
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=21.26 E-value=25 Score=29.50 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=32.2
Q ss_pred HHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHhcCch--hhHhhhcccccC
Q psy3552 37 KIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEATSLD--NLCQMYHGWAAY 91 (92)
Q Consensus 37 ~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eATd~~--NL~~MY~GW~P~ 91 (92)
..++..+++||...... -....+|+.||++|.+.. ++--+|+.|..|
T Consensus 645 ~~~i~~l~~rf~l~lse--------eea~~~~~~lI~~S~~s~~t~~~d~~h~~aq~ 693 (696)
T 2x6h_A 645 DKAVKKVEENLQLGLTD--------EEAVQHLQSLLDVSITAVMPALVEQIHRFTQY 693 (696)
T ss_dssp GGHHHHHHHHHTTTSCH--------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45678899999864331 135689999999997754 555566666544
No 14
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=21.24 E-value=38 Score=22.82 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q psy3552 64 VEGQTKKLIEE 74 (92)
Q Consensus 64 Ve~QV~~LI~e 74 (92)
+..||+.||++
T Consensus 26 I~kQI~Yll~q 36 (128)
T 1wdd_S 26 LLKQIEYLLRS 36 (128)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 66888888887
No 15
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=21.09 E-value=39 Score=22.10 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=9.1
Q ss_pred HHHHHHHHHHH
Q psy3552 64 VEGQTKKLIEE 74 (92)
Q Consensus 64 Ve~QV~~LI~e 74 (92)
+..||+.||++
T Consensus 27 I~kQV~Yll~q 37 (110)
T 1svd_M 27 IRAQIKYAIAQ 37 (110)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 66888988887
No 16
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=20.86 E-value=16 Score=20.77 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCchhhHhhhcccccC
Q psy3552 64 VEGQTKKLIEEATSLDNLCQMYHGWAAY 91 (92)
Q Consensus 64 Ve~QV~~LI~eATd~~NL~~MY~GW~P~ 91 (92)
-.++.+.+|++..+..-+..-|.-|||+
T Consensus 6 ~~~~~~~~l~~~~~~~~~v~f~~~~C~~ 33 (104)
T 2vim_A 6 TAADLEKLINENKGRLIVVDFFAQWCGP 33 (104)
T ss_dssp SHHHHHHHHHTTTTSCEEEEEECTTCHH
T ss_pred CHHHHHHHHHhcCCCeEEEEEECCCCHH
Confidence 3455666666544444444555567763
No 17
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=20.32 E-value=22 Score=20.74 Aligned_cols=31 Identities=3% Similarity=0.079 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHHHhc--CchhhHhhhcccccC
Q psy3552 61 PLSVEGQTKKLIEEAT--SLDNLCQMYHGWAAY 91 (92)
Q Consensus 61 ~LSVe~QV~~LI~eAT--d~~NL~~MY~GW~P~ 91 (92)
.+.-.++.+.++++|. +..-+...|.-|||+
T Consensus 10 ~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~ 42 (118)
T 2vm1_A 10 ACHTKQEFDTHMANGKDTGKLVIIDFTASWCGP 42 (118)
T ss_dssp ECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHH
T ss_pred EecCHHHHHHHHHhcccCCCEEEEEEECCCCHh
Confidence 4455688888898875 444455566678874
No 18
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=20.01 E-value=46 Score=22.22 Aligned_cols=15 Identities=27% Similarity=0.129 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCchh
Q psy3552 66 GQTKKLIEEATSLDN 80 (92)
Q Consensus 66 ~QV~~LI~eATd~~N 80 (92)
..++.+|+.|||+.+
T Consensus 15 s~~~~~IekATs~~l 29 (157)
T 1elk_A 15 SPVGQRIEKATDGSL 29 (157)
T ss_dssp SHHHHHHHHHTCTTC
T ss_pred cHHHHHHHHHcCCCC
Confidence 468999999999875
Done!