Query psy3552
Match_columns 92
No_of_seqs 110 out of 523
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 19:37:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3552.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3552hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gykb1 d.4.1.1 (B:4-133) DNas 72.1 2.4 0.00017 27.3 4.1 43 41-92 33-84 (130)
2 d2jb0b1 d.4.1.1 (B:449-572) DN 71.9 2.2 0.00016 27.3 3.9 42 41-91 30-80 (124)
3 d1ls1a1 a.24.13.1 (A:1-88) Sig 55.0 7.4 0.00054 22.8 3.8 36 34-75 46-81 (88)
4 d2fc6a1 g.66.1.1 (A:8-44) Targ 53.1 1.1 8.2E-05 23.1 -0.3 15 77-91 11-27 (37)
5 d1j8yf1 a.24.13.1 (F:3-86) Sig 44.8 13 0.00097 21.4 3.7 36 34-75 42-77 (84)
6 d2ldxa2 d.162.1.1 (A:160-331) 40.0 7.2 0.00052 24.0 2.0 23 5-27 1-24 (172)
7 d2jdia1 a.69.1.1 (A:380-510) F 39.6 12 0.00085 23.0 3.0 45 18-73 24-68 (131)
8 d1fx0a1 a.69.1.1 (A:373-501) F 37.0 21 0.0015 21.8 3.9 47 17-74 23-69 (129)
9 d1skyb1 a.69.1.1 (B:372-502) F 31.3 21 0.0015 21.8 3.2 42 20-72 26-67 (131)
10 d2ijqa1 a.246.2.1 (A:14-158) H 28.5 41 0.003 21.2 4.4 67 10-81 52-119 (145)
11 d1qgva_ c.47.1.8 (A:) spliceos 28.4 4.9 0.00036 24.9 -0.3 30 61-90 6-35 (137)
12 d1nxia_ d.58.47.1 (A:) Hypothe 28.3 7.9 0.00058 24.3 0.7 27 63-92 96-122 (132)
13 d2fwha1 c.47.1.1 (A:428-544) T 22.9 8.4 0.00061 21.9 0.0 29 63-91 8-36 (117)
14 d1elka_ a.118.9.2 (A:) Tom1 pr 22.8 18 0.0013 22.6 1.6 16 65-80 10-25 (153)
15 d1wgwa_ a.24.13.1 (A:) Signal 21.2 42 0.003 19.6 3.1 35 34-74 51-85 (99)
16 d2ifqa1 c.47.1.1 (A:1-105) Thi 20.4 10 0.00073 21.5 -0.0 29 62-90 5-33 (105)
No 1
>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia coli [TaxId: 562]}
Probab=72.09 E-value=2.4 Score=27.34 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=28.0
Q ss_pred HHHhhhccccccCCCCCCcccCCHHHHHH-HHHHHhcC--------chhhHhhhcccccCC
Q psy3552 41 ENIEGRLQGKVRSGGQNTTIPLSVEGQTK-KLIEEATS--------LDNLCQMYHGWAAYQ 92 (92)
Q Consensus 41 ~rV~~KL~G~~~~~~~~~~~~LSVe~QV~-~LI~eATd--------~~NL~~MY~GW~P~~ 92 (92)
..|.+||+|+.|.+. ..-=+ .-..-|.| +.|+.+|=-|+.||.
T Consensus 33 ~qIadkLrGr~F~sF---------d~FR~afW~~Va~DpeL~~QF~~~N~~rmk~G~AP~a 84 (130)
T d2gykb1 33 DRIADKLRDKEFKSF---------DDFRKAVWEEVSKDPELSKNLNPSNKSSVSKGYSPFT 84 (130)
T ss_dssp HHHHHHHTTCEESSH---------HHHHHHHHHHHHHCTTTGGGSCHHHHHHHHTTCCCBC
T ss_pred HHHHHHhcCCccCCH---------HHHHHHHHHHHhcCHHHHHHhCHHHHHHHhCCCCCCC
Confidence 578999999999642 11111 12233334 458899999999983
No 2
>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]}
Probab=71.94 E-value=2.2 Score=27.27 Aligned_cols=42 Identities=24% Similarity=0.093 Sum_probs=27.5
Q ss_pred HHHhhhccccccCCCCCCcccCCHHHHHH-HHHHHh--------cCchhhHhhhcccccC
Q psy3552 41 ENIEGRLQGKVRSGGQNTTIPLSVEGQTK-KLIEEA--------TSLDNLCQMYHGWAAY 91 (92)
Q Consensus 41 ~rV~~KL~G~~~~~~~~~~~~LSVe~QV~-~LI~eA--------Td~~NL~~MY~GW~P~ 91 (92)
..|.+||+|+.|.+. ..-=+ .-..-| =++.|+.+|=-|+.||
T Consensus 30 ~qIadkLrGr~F~sF---------d~FR~afW~~Va~DpeL~~QF~~~N~~rmk~G~AP~ 80 (124)
T d2jb0b1 30 DRIANKLRDKEFKSF---------DDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKAPK 80 (124)
T ss_dssp HHHHHHHTTCEESSH---------HHHHHHHHHHHHHCHHHHTTSCHHHHHHHHTTCCCB
T ss_pred HHHHHHhcCCcCCCH---------HHHHHHHHHHHhcCHHHHHHhCHHHHHHHhCCCCCC
Confidence 578999999999642 11111 122223 3456999999999998
No 3
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=55.04 E-value=7.4 Score=22.84 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHh
Q psy3552 34 LIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEA 75 (92)
Q Consensus 34 ~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eA 75 (92)
.-++..+++|+.|+.|.... ..+++.+|+-..+.+.
T Consensus 46 ~vvk~f~~~ik~k~~g~~v~------~~~~p~~~iikiV~dE 81 (88)
T d1ls1a1 46 EVARDFVERVREEALGKQVL------ESLTPAEVILATVYEA 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTTT------TCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHhh------cCCCHHHHHHHHHHHH
Confidence 45788999999999998763 5789999999988764
No 4
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.06 E-value=1.1 Score=23.12 Aligned_cols=15 Identities=20% Similarity=0.842 Sum_probs=11.2
Q ss_pred CchhhHhhhc--ccccC
Q psy3552 77 SLDNLCQMYH--GWAAY 91 (92)
Q Consensus 77 d~~NL~~MY~--GW~P~ 91 (92)
...++|.-|. ||||-
T Consensus 11 ~~~~iC~~FsAyGWCP~ 27 (37)
T d2fc6a1 11 HPTSICDNFSAYGWCPL 27 (37)
T ss_dssp CCSCBCSHHHHTCCCTT
T ss_pred CccchhhhhhhccccCC
Confidence 4457888886 99994
No 5
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=44.79 E-value=13 Score=21.39 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHh
Q psy3552 34 LIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEA 75 (92)
Q Consensus 34 ~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eA 75 (92)
.-++..+++|+.|+.|.... ..+++.+|+...+.+.
T Consensus 42 ~vv~~f~~~ik~k~~~~~v~------~g~~~~~~i~kiV~~e 77 (84)
T d1j8yf1 42 KLVFSLTNKIKERLKNEKPP------TYIERREWFIKIVYDE 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHCCCC------TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhc------cCCCHHHHHHHHHHHH
Confidence 46788999999999998763 5689999999888753
No 6
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.05 E-value=7.2 Score=23.98 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=17.5
Q ss_pred ccc-hhhHHhhhhhhhhhhcccCc
Q psy3552 5 TGT-SDQVRLTVCVLIRYQVDLTR 27 (92)
Q Consensus 5 ~~~-~~~~~~~~~~~~~~~~~~~~ 27 (92)
||| +|.+|....+.-.+.+++.+
T Consensus 1 tGT~LD~~R~~~~vA~~l~v~~~~ 24 (172)
T d2ldxa2 1 SGCNLDSARFRYLIGEKLGVNPTS 24 (172)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCTTS
T ss_pred CCchHHHHHHHHHHHHHhCcCHHH
Confidence 674 99999988887777776543
No 7
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=39.59 E-value=12 Score=23.04 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=30.1
Q ss_pred hhhhhcccCccchhhhHHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHH
Q psy3552 18 LIRYQVDLTRCTCQVYLIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIE 73 (92)
Q Consensus 18 ~~~~~~~~~~~~~~~n~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~ 73 (92)
..+|+=+....+...-.+++++.+-.++.-. .|+||++||-.|..
T Consensus 24 FaqF~sdlD~~t~~~l~rG~rl~ElLKQ~q~-----------~Pl~v~eQv~iL~A 68 (131)
T d2jdia1 24 FAQFGSDLDAATQQLLSRGVRLTELLKQGQY-----------SPMAIEEQVAVIYA 68 (131)
T ss_dssp GSSSCSSSCHHHHHHHHHHHHHHHHTCCCSS-----------CCCCHHHHHHHHHH
T ss_pred HHhhhhhhhHHHHhhhhhHHHHHHHHhcccc-----------cchhHHHHHHHHHH
Confidence 3445545555666666777777666665433 69999999988763
No 8
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=37.00 E-value=21 Score=21.82 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=31.6
Q ss_pred hhhhhhcccCccchhhhHHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHH
Q psy3552 17 VLIRYQVDLTRCTCQVYLIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEE 74 (92)
Q Consensus 17 ~~~~~~~~~~~~~~~~n~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~e 74 (92)
...+|+=+....+...-.+++++.+-.++.- ..|+||++||-.|..-
T Consensus 23 aFaqfgsdlD~~t~~~l~rG~rl~ElLKQ~q-----------~~Pl~v~eQv~iLyA~ 69 (129)
T d1fx0a1 23 AFAQFASDLDKATQNQLARGQRLRELLKQPQ-----------SAPLTVEEQVMTIYTG 69 (129)
T ss_dssp TTGGGCSSCCHHHHHHHHHHHHHHHHHCCCT-----------TCCCCHHHHHHHHHHH
T ss_pred HHHhhccchhHHHHHhhhHHHHHHHHHHccc-----------ccCCCHHHHHHHHHHH
Confidence 3455555555566666677777766666543 3799999999887653
No 9
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=31.25 E-value=21 Score=21.84 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=26.2
Q ss_pred hhhcccCccchhhhHHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHH
Q psy3552 20 RYQVDLTRCTCQVYLIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLI 72 (92)
Q Consensus 20 ~~~~~~~~~~~~~n~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI 72 (92)
+|+=+....+...-.+++++.+-+++.- ..|+||++||-.|.
T Consensus 26 qFgsdLD~~t~~~L~rG~rl~ElLKQ~q-----------~sP~~v~eQv~iLy 67 (131)
T d1skyb1 26 QFGSDLDKATQANVARGARTVEVLKQDL-----------HQPIPVEKQVLIIY 67 (131)
T ss_dssp CC-CC-CHHHHHHHHHHHHHHHHHCCCT-----------TCCCCHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHhhHHHHHHHhCCC-----------CCCcCHHHHHHHHH
Confidence 3444444455555666766666665543 36999999997765
No 10
>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}
Probab=28.51 E-value=41 Score=21.20 Aligned_cols=67 Identities=3% Similarity=-0.066 Sum_probs=51.4
Q ss_pred hHHhhhhhhhhhhcccC-ccchhhhHHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHHhcCchhh
Q psy3552 10 QVRLTVCVLIRYQVDLT-RCTCQVYLIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEATSLDNL 81 (92)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-~~~~~~n~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~eATd~~NL 81 (92)
.-|.-++-||..++-.. ....+...-|...+.+-..||.+.... ...+.+..-+..+.+-+.|++.+
T Consensus 52 ~er~~~QGLIQ~Aaa~~hh~~~gN~~GA~~l~~~al~~L~~~~~~-----~~Gidv~~l~~~~~~~~~d~~~~ 119 (145)
T d2ijqa1 52 TESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPND-----YYGVDLLDVRTTVTNALSDPSAL 119 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTT-----GGGBCHHHHHHHHHHHHHCGGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCc-----cCCccHHHHHHHHHHHHhchhhc
Confidence 45777888999988755 355666677888889999999865543 36788888888888888888865
No 11
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.41 E-value=4.9 Score=24.88 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHhcCchhhHhhhccccc
Q psy3552 61 PLSVEGQTKKLIEEATSLDNLCQMYHGWAA 90 (92)
Q Consensus 61 ~LSVe~QV~~LI~eATd~~NL~~MY~GW~P 90 (92)
.|..+.||+.+|..+.+.--+..-|.-|||
T Consensus 6 ~l~s~~~~dq~i~~~~~k~vvv~F~a~wC~ 35 (137)
T d1qgva_ 6 HLHNGWQVDQAILSEEDRVVVIRFGHDWDP 35 (137)
T ss_dssp BCCSHHHHHHHHHTCSSSEEEEEEECTTSH
T ss_pred ccCCHHHHHHHHHhCCCCEEEEEEECCCCc
Confidence 467789999999987665555556667886
No 12
>d1nxia_ d.58.47.1 (A:) Hypothetical protein VC0424 {Vibrio cholerae [TaxId: 666]}
Probab=28.34 E-value=7.9 Score=24.30 Aligned_cols=27 Identities=30% Similarity=0.657 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHhcCchhhHhhhcccccCC
Q psy3552 63 SVEGQTKKLIEEATSLDNLCQMYHGWAAYQ 92 (92)
Q Consensus 63 SVe~QV~~LI~eATd~~NL~~MY~GW~P~~ 92 (92)
.+..+|..|+..|..- .-.|-||.-||
T Consensus 96 ~I~~~~~~L~~LA~~~---~g~YDGWGTy~ 122 (132)
T d1nxia_ 96 LIDEQVEKLVNLAEKF---DIIYDGWGTYY 122 (132)
T ss_dssp HHHHHHHHHHHHHHHH---TCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHh---CcEeeCcccch
Confidence 3889999999988753 45699998775
No 13
>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}
Probab=22.89 E-value=8.4 Score=21.95 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHhcCchhhHhhhcccccC
Q psy3552 63 SVEGQTKKLIEEATSLDNLCQMYHGWAAY 91 (92)
Q Consensus 63 SVe~QV~~LI~eATd~~NL~~MY~GW~P~ 91 (92)
.-.++.+..|.+|.+.--|-..|.-|||+
T Consensus 8 ~~~~~~~~~l~~~~gK~vlv~F~a~wC~~ 36 (117)
T d2fwha1 8 KTVDELNQALVEAKGKPVMLDLYADWCVA 36 (117)
T ss_dssp CSHHHHHHHHHHHTTSCEEEEEECTTCHH
T ss_pred cCHHHHHHHHHHcCCCeEEEEEecccCCc
Confidence 34466778888887765666677778874
No 14
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.76 E-value=18 Score=22.63 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCchh
Q psy3552 65 EGQTKKLIEEATSLDN 80 (92)
Q Consensus 65 e~QV~~LI~eATd~~N 80 (92)
+..++.+|+.|||+.+
T Consensus 10 ~t~~~~~vekAT~~~l 25 (153)
T d1elka_ 10 SSPVGQRIEKATDGSL 25 (153)
T ss_dssp GSHHHHHHHHHTCTTC
T ss_pred CChHHHHHHHHcCCCC
Confidence 3569999999999976
No 15
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.25 E-value=42 Score=19.61 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCcccCCHHHHHHHHHHH
Q psy3552 34 LIAKIFLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEE 74 (92)
Q Consensus 34 ~~a~~~l~rV~~KL~G~~~~~~~~~~~~LSVe~QV~~LI~e 74 (92)
.-.+..+.+|+.|+.|.... ..++...++.+.+.+
T Consensus 51 ~vV~~f~~~Ik~k~~~~~~~------~g~n~~q~i~kiV~d 85 (99)
T d1wgwa_ 51 KLVKQLRENVKSAIDLEEMA------SGLNKRKMIQHAVFK 85 (99)
T ss_dssp HHHHHHHHHHHTTSCCSSCC------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccc------cCCCHHHHHHHHHHH
Confidence 46788899999999987763 457888888887765
No 16
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.37 E-value=10 Score=21.51 Aligned_cols=29 Identities=7% Similarity=0.185 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHhcCchhhHhhhccccc
Q psy3552 62 LSVEGQTKKLIEEATSLDNLCQMYHGWAA 90 (92)
Q Consensus 62 LSVe~QV~~LI~eATd~~NL~~MY~GW~P 90 (92)
++-.++.+.+|+++.+.--+..-|..||+
T Consensus 5 i~s~~~f~~~l~~~~~k~vvv~F~a~wC~ 33 (105)
T d2ifqa1 5 IESKTAFQEALDAAGDKLVVVDFSATWCG 33 (105)
T ss_dssp ECSHHHHHHHHHHTTTSCEEEEEECTTCH
T ss_pred cCCHHHHHHHHHhCCCCEEEEEEEcCCcc
Confidence 34456778888887665556666777886
Done!