RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3552
         (92 letters)



>d1vmga_ a.204.1.2 (A:) Hypothetical protein SSo12199 (SSo3215)
          {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 83

 Score = 23.6 bits (51), Expect = 2.7
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 47 LQGKVRSGGQNTTIPLSVEGQTKKLIEEATSL 78
          LQ K++           +      L+EE   L
Sbjct: 8  LQSKMKEMYFEKDSQRGIYATFTWLVEEVGEL 39


>d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 148

 Score = 23.1 bits (49), Expect = 6.8
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 70  KLIEEATSLDNLCQMYH 86
           K  E+AT+   +  +Y 
Sbjct: 129 KQPEQATTSAQVACLYR 145


>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754
          {Aeropyrum pernix [TaxId: 56636]}
          Length = 104

 Score = 22.4 bits (48), Expect = 8.4
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 14/38 (36%)

Query: 39 FLENIEGRLQGKVRSGGQNTTIPLSVEGQTKKLIEEAT 76
           L+ I+GR+ G+               G+ ++ IEE T
Sbjct: 19 HLKRIKGRIIGE--------------GGRARRTIEEMT 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 331,792
Number of extensions: 11989
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 4
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)