Query psy3554
Match_columns 672
No_of_seqs 257 out of 1049
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 19:39:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0812|consensus 100.0 2E-68 4.4E-73 543.1 29.9 305 61-456 1-311 (311)
2 KOG0809|consensus 100.0 4.6E-32 9.9E-37 278.6 25.0 253 61-365 1-275 (305)
3 KOG0810|consensus 99.9 1.8E-23 3.9E-28 218.9 27.2 227 97-365 33-263 (297)
4 KOG0811|consensus 99.8 6.9E-19 1.5E-23 182.2 28.0 221 97-365 14-237 (269)
5 COG5325 t-SNARE complex subuni 99.8 4.9E-19 1.1E-23 181.7 23.7 219 95-365 29-252 (283)
6 COG5074 t-SNARE complex subuni 99.7 1.9E-15 4.1E-20 152.3 22.6 219 101-366 22-243 (280)
7 PF05739 SNARE: SNARE domain; 99.3 1.8E-11 4E-16 99.8 9.2 61 305-365 1-61 (63)
8 cd00193 t_SNARE Soluble NSF (N 99.3 1.8E-11 3.9E-16 97.5 8.4 59 304-362 2-60 (60)
9 smart00397 t_SNARE Helical reg 99.2 6.8E-11 1.5E-15 95.5 9.3 64 299-362 3-66 (66)
10 PF00804 Syntaxin: Syntaxin; 98.9 1.7E-08 3.6E-13 88.0 12.1 98 99-205 2-103 (103)
11 smart00503 SynN Syntaxin N-ter 98.4 7.8E-06 1.7E-10 73.5 14.1 109 98-210 2-114 (117)
12 KOG3894|consensus 98.4 0.00022 4.8E-09 75.9 25.5 277 63-365 1-289 (316)
13 cd00179 SynN Syntaxin N-termin 98.3 1.8E-05 3.8E-10 74.6 15.6 120 99-221 1-124 (151)
14 KOG3202|consensus 97.9 0.01 2.3E-07 61.6 26.6 191 98-350 4-194 (235)
15 PF14523 Syntaxin_2: Syntaxin- 96.4 0.094 2E-06 46.6 13.3 95 109-212 1-98 (102)
16 PF11416 Sed5p: Integral membr 93.5 0.026 5.7E-07 40.9 0.5 20 62-81 3-23 (29)
17 PF10496 Syntaxin-18_N: SNARE- 92.7 0.27 5.9E-06 43.1 5.8 65 63-127 1-66 (87)
18 PF00957 Synaptobrevin: Synapt 92.7 2 4.4E-05 37.6 11.3 43 308-350 3-45 (89)
19 PF09753 Use1: Membrane fusion 91.1 4.2 9E-05 42.4 13.3 41 307-350 169-209 (251)
20 KOG3385|consensus 91.1 1.6 3.4E-05 41.3 9.0 48 305-352 33-80 (118)
21 KOG0811|consensus 90.2 30 0.00064 37.2 20.8 56 400-455 208-265 (269)
22 KOG0810|consensus 89.7 32 0.00068 37.5 18.7 251 104-458 33-292 (297)
23 COG5074 t-SNARE complex subuni 87.9 2.4 5.2E-05 44.5 8.4 49 307-355 177-225 (280)
24 PF09177 Syntaxin-6_N: Syntaxi 87.6 5.9 0.00013 35.5 9.9 63 101-167 2-64 (97)
25 COG5325 t-SNARE complex subuni 84.4 11 0.00024 40.6 11.3 30 400-429 223-252 (283)
26 KOG0860|consensus 79.6 32 0.00069 32.8 11.3 42 309-350 30-71 (116)
27 KOG1666|consensus 79.0 89 0.0019 32.8 24.9 32 137-168 31-62 (220)
28 smart00503 SynN Syntaxin N-ter 72.3 54 0.0012 29.3 10.7 107 108-218 5-115 (117)
29 PF12352 V-SNARE_C: Snare regi 70.7 45 0.00098 27.5 9.1 54 310-363 10-63 (66)
30 KOG3065|consensus 70.5 15 0.00033 39.4 7.7 57 305-361 215-271 (273)
31 PF12273 RCR: Chitin synthesis 69.5 2.9 6.3E-05 39.4 1.9 36 434-471 1-36 (130)
32 cd00179 SynN Syntaxin N-termin 67.6 58 0.0013 30.6 10.3 112 108-222 3-118 (151)
33 PF07889 DUF1664: Protein of u 66.1 64 0.0014 31.1 10.1 85 99-198 38-123 (126)
34 PF05478 Prominin: Prominin; 64.9 3.4E+02 0.0073 33.4 21.5 45 408-452 387-431 (806)
35 KOG3850|consensus 63.5 2.3E+02 0.0051 32.2 15.0 58 306-365 307-364 (455)
36 PRK15048 methyl-accepting chem 62.4 2.9E+02 0.0062 31.7 22.2 57 302-358 432-488 (553)
37 PF12273 RCR: Chitin synthesis 62.1 5.1 0.00011 37.8 2.0 17 435-451 5-21 (130)
38 PRK15041 methyl-accepting chem 56.8 3.7E+02 0.008 31.2 21.5 55 300-354 432-486 (554)
39 COG4942 Membrane-bound metallo 56.3 99 0.0022 35.3 11.0 64 302-365 39-102 (420)
40 KOG3065|consensus 52.8 63 0.0014 34.9 8.4 58 308-365 73-136 (273)
41 PF03908 Sec20: Sec20; InterP 50.4 1.8E+02 0.004 25.8 11.6 23 416-438 52-74 (92)
42 PF14992 TMCO5: TMCO5 family 50.1 1.7E+02 0.0038 31.8 11.1 53 305-357 127-179 (280)
43 PRK00295 hypothetical protein; 48.1 1.1E+02 0.0023 26.3 7.6 46 310-355 7-52 (68)
44 PF14523 Syntaxin_2: Syntaxin- 47.1 2E+02 0.0044 25.3 10.2 85 125-219 14-98 (102)
45 KOG0812|consensus 46.2 1.3E+02 0.0028 33.0 9.4 37 99-135 78-114 (311)
46 PF11932 DUF3450: Protein of u 41.1 3.4E+02 0.0075 28.2 11.6 109 98-213 43-163 (251)
47 cd00193 t_SNARE Soluble NSF (N 39.9 1.7E+02 0.0038 22.7 7.3 54 312-365 3-56 (60)
48 PF00015 MCPsignal: Methyl-acc 38.9 3.1E+02 0.0067 26.6 10.4 61 302-362 129-189 (213)
49 PF04102 SlyX: SlyX; InterPro 36.1 1.5E+02 0.0034 25.2 6.7 49 308-356 4-52 (69)
50 PF07798 DUF1640: Protein of u 35.9 4.5E+02 0.0098 26.1 13.1 24 404-427 135-158 (177)
51 KOG3208|consensus 34.0 6E+02 0.013 27.0 24.5 110 99-221 4-121 (231)
52 PF00804 Syntaxin: Syntaxin; 33.8 3.1E+02 0.0066 23.5 9.0 53 137-198 51-103 (103)
53 PF10960 DUF2762: Protein of u 33.3 31 0.00067 30.1 2.1 14 440-453 14-27 (71)
54 PF06422 PDR_CDR: CDR ABC tran 32.0 49 0.0011 30.3 3.3 29 421-452 35-63 (103)
55 smart00502 BBC B-Box C-termina 30.1 3E+02 0.0065 24.4 8.0 54 312-365 36-90 (127)
56 PF07851 TMPIT: TMPIT-like pro 29.2 3.2E+02 0.0069 30.5 9.4 60 138-204 28-87 (330)
57 cd07625 BAR_Vps17p The Bin/Amp 28.6 5.5E+02 0.012 27.1 10.6 33 132-164 102-134 (230)
58 KOG4552|consensus 28.4 3.9E+02 0.0085 28.2 9.2 12 421-432 129-140 (272)
59 PF07106 TBPIP: Tat binding pr 27.5 5.9E+02 0.013 24.9 11.5 26 138-163 112-137 (169)
60 PHA03332 membrane glycoprotein 27.5 4.8E+02 0.01 33.5 11.1 25 140-164 921-945 (1328)
61 PF09889 DUF2116: Uncharacteri 27.4 81 0.0018 26.7 3.5 20 431-453 36-55 (59)
62 KOG2348|consensus 26.8 75 0.0016 37.0 4.2 61 387-454 510-572 (667)
63 PF13624 SurA_N_3: SurA N-term 26.2 22 0.00047 33.4 -0.0 43 430-474 5-47 (154)
64 PF07127 Nodulin_late: Late no 26.0 51 0.0011 26.8 2.1 18 437-454 4-21 (54)
65 PRK00736 hypothetical protein; 25.8 3.5E+02 0.0076 23.2 7.2 45 310-354 7-51 (68)
66 PF01540 Lipoprotein_7: Adhesi 25.7 4.4E+02 0.0095 28.9 9.3 51 99-156 216-266 (353)
67 PF02346 Vac_Fusion: Chordopox 25.7 2.8E+02 0.0061 23.4 6.3 43 309-351 2-44 (57)
68 KOG4559|consensus 25.3 1.7E+02 0.0037 27.5 5.4 48 304-359 64-115 (120)
69 PF10046 BLOC1_2: Biogenesis o 24.9 5.3E+02 0.011 23.4 8.7 62 101-165 4-65 (99)
70 KOG0994|consensus 24.8 5.6E+02 0.012 33.4 11.1 102 104-210 1654-1756(1758)
71 PF10241 KxDL: Uncharacterized 24.3 3.2E+02 0.0069 24.4 6.9 66 101-166 15-81 (88)
72 PRK04325 hypothetical protein; 24.2 4.8E+02 0.01 22.7 8.0 45 310-354 11-55 (74)
73 PF09278 MerR-DNA-bind: MerR, 23.6 3.4E+02 0.0074 21.9 6.6 55 101-165 5-59 (65)
74 KOG3850|consensus 23.5 1.2E+03 0.025 27.0 14.3 68 299-366 303-378 (455)
75 PF00517 GP41: Retroviral enve 22.6 7.6E+02 0.016 25.4 10.2 39 374-412 69-113 (204)
76 PF02958 EcKinase: Ecdysteroid 22.0 16 0.00035 37.8 -1.9 28 9-36 237-264 (294)
77 PF10046 BLOC1_2: Biogenesis o 21.1 2.3E+02 0.0049 25.8 5.5 29 100-128 38-66 (99)
78 PF12325 TMF_TATA_bd: TATA ele 20.8 4.6E+02 0.01 25.0 7.6 52 108-159 65-117 (120)
79 PF10146 zf-C4H2: Zinc finger- 20.3 3E+02 0.0064 29.1 6.8 64 100-164 11-75 (230)
No 1
>KOG0812|consensus
Probab=100.00 E-value=2e-68 Score=543.14 Aligned_cols=305 Identities=51% Similarity=0.748 Sum_probs=246.2
Q ss_pred cc-chhHHHHHHHHHHhcccccccccccchhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHH
Q psy3554 61 MP-RERTLEFNNVIRSLQGKNIVRAVAAKDVRRAQFVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTE 139 (672)
Q Consensus 61 Ms-RDRT~EF~S~v~s~q~r~~~~~~s~~~~~~a~~~~~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD~s~E 139 (672)
|+ ||||.||++++++++.|+..+.+...++.+....+..+||.+.|+.|+++|++|.+||+||++||||+++|||+++|
T Consensus 1 m~~rDRT~Ef~~~~~s~~~r~~~~~~~~~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~Ve 80 (311)
T KOG0812|consen 1 MSFRDRTSEFQAAVKSLKKRNATRGVNQADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRPVE 80 (311)
T ss_pred CCcchhhHHHHHHHHHHHHHhhccccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchh
Confidence 77 99999999999999988643222222233344567788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3554 140 IQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRR 219 (672)
Q Consensus 140 IeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRr 219 (672)
|+|||++||++++.+|++|.+|+...+..+. .++.+...|++|||..|+++|++++++||+|+|.|++++|+++.|+
T Consensus 81 I~eLT~iikqdi~sln~~i~~Lqei~~~~gn---~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~ 157 (311)
T KOG0812|consen 81 IQELTFIIKQDITSLNSQIAQLQEIVKANGN---LSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRR 157 (311)
T ss_pred hHHHHHHHhcchHHHHHHHHHHHHHHHHhcc---ccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999854332 2225568899999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCC-CCCC-CCCCC-CCccchhhhh-hcC-CcchHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhh
Q psy3554 220 DQYSGGGAPSSLPP-AAMS-GPHHQ-GSVLLADEQC-AID-MSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMML 294 (672)
Q Consensus 220 eqFs~~~~~~~lp~-sas~-~~~~~-~S~LldEe~e-sg~-vaiD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL 294 (672)
++|+.+.++. |+ +.++ +.... .+.+.+...+ +.+ .+.+++ ++...|| + ||++
T Consensus 158 dkfs~~~a~~--~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~g------------------d~~~~qq-q--Qm~l 214 (311)
T KOG0812|consen 158 DKFSASYASL--NANPVSNSAARLHPLKLLVDPKDEASQDVESLNMG------------------DSSNPQQ-Q--QMAL 214 (311)
T ss_pred HHhccccCCC--CCcccCcccccCCchhhhcCchhhccccccccccc------------------CCCCCHH-H--HHHH
Confidence 9999754332 11 1111 11111 2222222211 111 112211 0011111 1 2666
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCcc
Q psy3554 295 YEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICISTKTQAHGDQN 374 (672)
Q Consensus 295 ~e~~qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~~~~~~~~~~ 374 (672)
+ ++.++|+|+|..++++||++|.|||+||+|||+||.||||+++|||+||+++..
T Consensus 215 l-~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~l------------------------ 269 (311)
T KOG0812|consen 215 L-DESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDL------------------------ 269 (311)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhh------------------------
Confidence 6 556999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccceeeeccCCCCCCccchhhcccccchhhhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q psy3554 375 TWISTKTQACEDTVRVTVPNKKYKSETYTEIDANILDTELHVESAHREILKYFQSVTSNRWLMIKIFAVLIFFFIFFVVF 454 (672)
Q Consensus 375 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~a~~ellky~~~vssnR~L~~Kif~vl~~f~~~fv~f 454 (672)
||++||+||||||++||||||||+|||+||||||++||||
T Consensus 270 ----------------------------------------nI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvlf 309 (311)
T KOG0812|consen 270 ----------------------------------------NIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVLF 309 (311)
T ss_pred ----------------------------------------hhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999
Q ss_pred hc
Q psy3554 455 LA 456 (672)
Q Consensus 455 ~a 456 (672)
++
T Consensus 310 ~~ 311 (311)
T KOG0812|consen 310 LA 311 (311)
T ss_pred cC
Confidence 85
No 2
>KOG0809|consensus
Probab=100.00 E-value=4.6e-32 Score=278.62 Aligned_cols=253 Identities=21% Similarity=0.263 Sum_probs=188.8
Q ss_pred ccchhHHHHHHHHHHhcccccc--cccccchh-----------hh----hhcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 61 MPRERTLEFNNVIRSLQGKNIV--RAVAAKDV-----------RR----AQFVQNYGEFMLIAKTIGKNISSTYAKLEKL 123 (672)
Q Consensus 61 MsRDRT~EF~S~v~s~q~r~~~--~~~s~~~~-----------~~----a~~~~~~sEF~~~AeeI~kdIs~ts~KLeKL 123 (672)
|+||||..|..+++++...... ...+..+. .. +.....+|-|.+.+++|...+..++.++++|
T Consensus 1 atRnrT~lF~~~Rn~~~~~r~~~~~~~~~d~~~e~~~~lv~~~~~~~~~~~~d~lpP~wvd~~~ev~~~l~rvrrk~~eL 80 (305)
T KOG0809|consen 1 ATRNRTELFLLYRNNASHNRQPLGDRSGDDPVIEMATSLVNEAEEGKTVSDEDGLPPAWVDVAEEVDYYLSRVRRKIDEL 80 (305)
T ss_pred CcchHHHHHHHHHhhhhhhccccccccCcchhHHhHhccccchhcCCccccccCCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999743311 01111110 00 1122468999999999999999999999999
Q ss_pred HHHHHHccC--CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchHHHHHHHHHHHHHHHH
Q psy3554 124 TLLAKRKSL--FNDKP---TEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMS 198 (672)
Q Consensus 124 aqLaKRksL--FDD~s---~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskNVV~sLqsKLq~LS 198 (672)
.++|.|+.+ |+|+. .+|++||.+|+++|++|++.|+.+....+. .+..+.....|++..|..+|+.+|
T Consensus 81 gk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~-------~~~~e~~~~~n~~~~la~~LQ~~s 153 (305)
T KOG0809|consen 81 GKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQ-------LSPSERLLRKNAQGYLALQLQTLS 153 (305)
T ss_pred HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-------CChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999655 99975 799999999999999999999999864321 123346788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcchHHHHHHHHHHHhhhhhccc
Q psy3554 199 TEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSDTALQQQQQQKTMMLYEDQNM 278 (672)
Q Consensus 199 ~~FKdVLE~RTenLKaqkeRreqFs~~~~~~~lp~sas~~~~~~~S~LldEe~esg~vaiD~~g~~q~~~t~pl~l~~~f 278 (672)
.+||..|..|-+.++.++++-..|..... ...+.. .|. .+
T Consensus 154 ~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~-----------------~~~~~~-------dd~----------------d~ 193 (305)
T KOG0809|consen 154 REFRGLQSKYLKRLRNREENSQEYEDSLD-----------------NTVDLP-------DDE----------------DF 193 (305)
T ss_pred HHHHHHHHHHHHHhhchhhcccchhhhcc-----------------ccccCc-------chh----------------hh
Confidence 99999996654444433333222221100 000000 000 02
Q ss_pred chHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 279 SDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRD 358 (672)
Q Consensus 279 Sqs~lqQQQQQ~qlqL~e~~qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~e 358 (672)
++...+++ |+++. ..++.++++|++||.+|..+|.||++||+||..||.|||++|||||||||++..+|+.|.+|
T Consensus 194 ~~~~~qe~----ql~~~-e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~ke 268 (305)
T KOG0809|consen 194 SDRTFQEQ----QLMLF-ENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKE 268 (305)
T ss_pred hhhhHHHH----HHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHH
Confidence 22222222 14455 55899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhc
Q psy3554 359 QNICIST 365 (672)
Q Consensus 359 L~~A~~~ 365 (672)
|.+|+..
T Consensus 269 L~KAe~y 275 (305)
T KOG0809|consen 269 LHKAERY 275 (305)
T ss_pred HHHHHHH
Confidence 9999988
No 3
>KOG0810|consensus
Probab=99.92 E-value=1.8e-23 Score=218.91 Aligned_cols=227 Identities=22% Similarity=0.263 Sum_probs=166.5
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy3554 97 QNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKS--LFNDK--PTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVI 172 (672)
Q Consensus 97 ~~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRks--LFDD~--s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~ 172 (672)
...++|++.+++|..+|..+...+++|.++|.+.. .-.++ ..+++.++..|++.-+.++..|+.++..........
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~ 112 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQN 112 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 56899999999999999999999999999995521 12233 378999999999999999999999988665433211
Q ss_pred cCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCccchhhhh
Q psy3554 173 SSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQC 252 (672)
Q Consensus 173 ~s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreqFs~~~~~~~lp~sas~~~~~~~S~LldEe~e 252 (672)
+ ......++++....+..+|.++..+|+.++..|.+..|..-.|+ .+...+... .....++..+
T Consensus 113 ~--~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rq-l~i~~~~~~-------------~de~ie~~ie 176 (297)
T KOG0810|consen 113 R--SSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQ-LFIVGGEET-------------TDEEIEEMIE 176 (297)
T ss_pred C--CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhCCCcC-------------ChHHHHHHHH
Confidence 1 12235678888888999999999999999987776666544443 333211000 1111111111
Q ss_pred hcCCcchHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 253 AIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQ 332 (672)
Q Consensus 253 sg~vaiD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL~e~~qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~ 332 (672)
+|.. ..|++..+...+ .. .+..+.+++||.+|.+||++|.||++||.|||+||+
T Consensus 177 ~g~~-------------------~~f~~~~i~~~~------~~-~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe 230 (297)
T KOG0810|consen 177 SGGS-------------------EVFTQKAIQDRG------QA-KQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVE 230 (297)
T ss_pred CCCh-------------------HHHHHHHHHHhh------hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 113333332110 11 446788999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 333 EQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 333 EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
+||||||+||.||++|.+||++|+.++++|+.-
T Consensus 231 ~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~ 263 (297)
T KOG0810|consen 231 SQGEMVDRIENNVENAVDYVEQGVDHLKKAVKY 263 (297)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876
No 4
>KOG0811|consensus
Probab=99.85 E-value=6.9e-19 Score=182.16 Aligned_cols=221 Identities=19% Similarity=0.228 Sum_probs=146.6
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3554 97 QNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKP---TEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVIS 173 (672)
Q Consensus 97 ~~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD~s---~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~ 173 (672)
..+.+|...+.+|...|..+......|.+.+...+-+.|.+ ..++.....+.+.++.++..|+.+..... .
T Consensus 14 ~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~--~---- 87 (269)
T KOG0811|consen 14 EEPFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL--E---- 87 (269)
T ss_pred CCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--h----
Confidence 45678999999999999999999999999998877788876 45666666666667777777777766543 1
Q ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCccchhhhhh
Q psy3554 174 SGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCA 253 (672)
Q Consensus 174 s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreqFs~~~~~~~lp~sas~~~~~~~S~LldEe~es 253 (672)
...+..+.....|...+....+.|..++..-.+.+| ..+.. .++ ..+..++++..
T Consensus 88 ----~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek------~~~~a----------~~s----~~s~~~~~~~~- 142 (269)
T KOG0811|consen 88 ----SDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK------IPMVA----------RGS----QNSQQLDEESP- 142 (269)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc------ccccc----------ccc----ccchhhhhhhh-
Confidence 123455666666777777777777777643222222 00000 000 11111221100
Q ss_pred cCCcchHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3554 254 IDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQE 333 (672)
Q Consensus 254 g~vaiD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL~e~~qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~E 333 (672)
..++.+ .+. ...+.+.+.+.+.....+.+...+++|+++|++||+.|.||++||+||+.||+|
T Consensus 143 ---~~~~~~---------~~~-----~~~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~e 205 (269)
T KOG0811|consen 143 ---RVDELS---------NNG-----SQSQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHE 205 (269)
T ss_pred ---hhhhhh---------ccc-----hhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011100 000 001111011111111113467789999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 334 QEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 334 QGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
||++||.||+|||.|.++|+.|+++|.+|.+.
T Consensus 206 QG~~VDsIe~nve~a~~nveqg~~~L~kA~~y 237 (269)
T KOG0811|consen 206 QGELVDSIEANVENASVNVEQGTENLRKAAKY 237 (269)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.84 E-value=4.9e-19 Score=181.69 Aligned_cols=219 Identities=22% Similarity=0.259 Sum_probs=149.4
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3554 95 FVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSL--FNDKP---TEIQELTYIIKEDLNSLNQQIAKLQQVGKHQR 169 (672)
Q Consensus 95 ~~~~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksL--FDD~s---~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~ 169 (672)
.....|-|...+..|...+..+..+...|.+-.++.++ |.|+. .||++|+..|.+++.+|.+-++..-......-
T Consensus 29 ~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s~~ 108 (283)
T COG5325 29 DDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQSSF 108 (283)
T ss_pred hhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999999999998888554 99875 78999999999999999988877544222110
Q ss_pred ccccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCccchh
Q psy3554 170 DVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLAD 249 (672)
Q Consensus 170 ~~~~s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreqFs~~~~~~~lp~sas~~~~~~~S~LldE 249 (672)
.....-.-.|..-....+++.-+..|++-+..|.+.+ |- . .. ..+.+-++
T Consensus 109 ------~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l-----~~----~--~~-------------~~~~l~ee 158 (283)
T COG5325 109 ------LQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFL-----RN----K--NN-------------DQHPLEEE 158 (283)
T ss_pred ------HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHH-----Hh----c--cc-------------ccCchhhh
Confidence 0011122334455566777777777777765443222 10 0 00 01222222
Q ss_pred hhhhcCCcchHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 250 EQCAIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAH 329 (672)
Q Consensus 250 e~esg~vaiD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL~e~~qd~yIQqR~eeIqnIESTI~ELgqIFqQLAt 329 (672)
+.+. +.+. ..++..+++| ..++..-+.+...+++|.++|.+|+.+|.||++||.||.+
T Consensus 159 e~e~---~~~~----------------~~sq~~lqq~---~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~ 216 (283)
T COG5325 159 EDEE---SLSS----------------LGSQQTLQQQ---GLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGS 216 (283)
T ss_pred hhhh---hhhc----------------cchhhHHHHh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2110 0000 0111112211 1111100223334899999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 330 MVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 330 MV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
+|.|||++|||||+|++.+.++.+.|++||.+|..-
T Consensus 217 lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~h 252 (283)
T COG5325 217 LVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAH 252 (283)
T ss_pred HHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHH
Confidence 999999999999999999999999999999999887
No 6
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.70 E-value=1.9e-15 Score=152.27 Aligned_cols=219 Identities=22% Similarity=0.288 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccc
Q psy3554 101 EFMLIAKTIGKNISSTYAKLEKLTLLAKRKSL--FNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQH 178 (672)
Q Consensus 101 EF~~~AeeI~kdIs~ts~KLeKLaqLaKRksL--FDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skq 178 (672)
-|...-..|.++++.+...+.+...||+...- |.. +...++..+..-..+-..||...+.......+.+=|
T Consensus 22 ~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~-------~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ih 94 (280)
T COG5074 22 TFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEE-------QSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIH 94 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 36669999999999999999999999998432 322 223333333333333333333222111000000001
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcc
Q psy3554 179 LLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSD 258 (672)
Q Consensus 179 e~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreqFs~~~~~~~lp~sas~~~~~~~S~LldEe~esg~vai 258 (672)
...........+.||.++.++|+.+.-.|.+..+.+ -||+ |... . |. +. +++-+. ++
T Consensus 95 -l~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~-~rrQ-y~Ia-~----P~-AT-----------Edeve~---aI 151 (280)
T COG5074 95 -LANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQ-ARRQ-YIIA-Q----PE-AT-----------EDEVEA---AI 151 (280)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHh-hhhc-C----Cc-cc-----------hHHHHH---Hh
Confidence 112245556678999999999999998887766543 3443 3321 1 11 01 111110 11
Q ss_pred -hHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy3554 259 -TALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEM 337 (672)
Q Consensus 259 -D~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL~e~~qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEM 337 (672)
|.+| + +.||+..+.... -.. ......++|.||++|.+||.+|.||.++|++|++||.||.|+
T Consensus 152 nd~nG-------~-----qvfsqalL~anr----~ge-AktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~ 214 (280)
T COG5074 152 NDVNG-------Q-----QVFSQALLNANR----RGE-AKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQEN 214 (280)
T ss_pred cccch-------H-----HHHHHHHHhcCc----cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 1111 1 223332221110 000 034567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy3554 338 VERIDANILDTELHVESAHRDQNICISTK 366 (672)
Q Consensus 338 IDRID~NVEdA~~~Ve~a~~eL~~A~~~~ 366 (672)
||-||.|++++..+|++|+..+..|++..
T Consensus 215 Vd~I~~~~~~~~~n~~~g~~h~d~Avksa 243 (280)
T COG5074 215 VDVIDKNVEDAQENVEQGVGHTDKAVKSA 243 (280)
T ss_pred HHHHHhhHhhHHhhHHHhhhhHHHHHHHH
Confidence 99999999999999999999888888773
No 7
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.28 E-value=1.8e-11 Score=99.80 Aligned_cols=61 Identities=25% Similarity=0.480 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 305 SRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 305 qR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
+|+++|..|+++|.+|++||.+|+.+|.+|+++||+||.||+.|..+|.+|+.+|.+|.+.
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999876
No 8
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.27 E-value=1.8e-11 Score=97.45 Aligned_cols=59 Identities=31% Similarity=0.536 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3554 304 QSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNIC 362 (672)
Q Consensus 304 QqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A 362 (672)
++|++++.+|+.+|.+|++||.+|+.||.+||++|||||+|++.+..+++.|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999875
No 9
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.21 E-value=6.8e-11 Score=95.47 Aligned_cols=64 Identities=25% Similarity=0.484 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3554 299 SEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNIC 362 (672)
Q Consensus 299 qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A 362 (672)
...++++|++++.+|+.+|.||++||.+|+.+|.+|+++||||++|++.+..+++.|..+|++|
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 3467899999999999999999999999999999999999999999999999999999999875
No 10
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=98.91 E-value=1.7e-08 Score=88.01 Aligned_cols=98 Identities=23% Similarity=0.284 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q psy3554 99 YGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFND----KPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISS 174 (672)
Q Consensus 99 ~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD----~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s 174 (672)
+++|++.+++|..+|..+..++++|.+||++.....+ ...||+.|+.+|++.+..|+..|+.|+......
T Consensus 2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~------ 75 (103)
T PF00804_consen 2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDS------ 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------
Confidence 6899999999999999999999999999999655333 248999999999999999999999999875411
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 175 GHQHLLSHSSSVVLALQSKLASMSTEFKNVL 205 (672)
Q Consensus 175 ~skqe~~HskNVV~sLqsKLq~LS~~FKdVL 205 (672)
....++.++++.++++++.++..|+++|
T Consensus 76 ---~~~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 76 ---EGEEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp ---HCTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 1235677888899999999999999875
No 11
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=98.40 E-value=7.8e-06 Score=73.54 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3554 98 NYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDK----PTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVIS 173 (672)
Q Consensus 98 ~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD~----s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~ 173 (672)
.+++|+..+++|..+|..++..+.+|..++++...-.|. ..+++.+...|+...+.++..|+.|+.........
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~-- 79 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRAS-- 79 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccc--
Confidence 368999999999999999999999999999995542222 26889999999999999999999998765432211
Q ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 174 SGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTE 210 (672)
Q Consensus 174 s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTe 210 (672)
+........+++..|..+|+++...|++++..|.+
T Consensus 80 --~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~ 114 (117)
T smart00503 80 --GSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRE 114 (117)
T ss_pred --CCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12235678999999999999999999999876543
No 12
>KOG3894|consensus
Probab=98.36 E-value=0.00022 Score=75.89 Aligned_cols=277 Identities=14% Similarity=0.109 Sum_probs=141.7
Q ss_pred chhHHHHHHHHHHhcccccccccccchhhh--hhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC-HHH
Q psy3554 63 RERTLEFNNVIRSLQGKNIVRAVAAKDVRR--AQFVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDK-PTE 139 (672)
Q Consensus 63 RDRT~EF~S~v~s~q~r~~~~~~s~~~~~~--a~~~~~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD~-s~E 139 (672)
+|+|.-|...+.....++.....+...+.+ -..+.....|...|.++=..|.++...|-+.++-..--- -+|- ..+
T Consensus 1 ~d~t~~fk~sv~~i~~~~k~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~i~~l~~fl~e~rk~y~d~~-mtd~ekd~ 79 (316)
T KOG3894|consen 1 SDITPIFKASVATVDDARKAQNGGDAHVERKQEDFPNPKEDFEKFADEVIKEIARLRKFLLEHRKDYKDFR-MTDAEKDE 79 (316)
T ss_pred CcchHHHHHHHHHHHHhccccccCCCCcchhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHH
Confidence 599999999999998665432111111111 123456778999999999999999988888765554211 1121 133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q psy3554 140 IQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMST------EFKNVLEVRTENLK 213 (672)
Q Consensus 140 IeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskNVV~sLqsKLq~LS~------~FKdVLE~RTenLK 213 (672)
|+ .+-..-+..+...|..|........ +.+...|.+.|.+.|..-++..-+ ..+-..+..+..+-
T Consensus 80 id---~e~~~fi~~~t~~~~~l~~~~~~~h------~~~~~~~~~~i~~~l~~l~k~~~~~~s~~~k~rV~~~l~~~rl~ 150 (316)
T KOG3894|consen 80 ID---QECRLFIQQYTEKIEQLINYEMEEH------SLQLERFQDAVLRWLGILLKRNENTYSVQHKQRVENELSEKRLS 150 (316)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 33 3334446677777777766543321 234456677665555432222211 11222222222222
Q ss_pred HHHHhhhhccCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcchHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhh
Q psy3554 214 QAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMM 293 (672)
Q Consensus 214 aqkeRreqFs~~~~~~~lp~sas~~~~~~~S~LldEe~esg~vaiD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlq 293 (672)
..+--...+.. .+...+.... .+.........+. +.....+.++.-.+.+...-+.+ ....+ +|
T Consensus 151 vl~~~~~~~~~--s~~~~~~~~~-~~~~~~en~~~~~--~~~~~s~~~~e~~~~~~~~~e~~------~s~e~-----~Q 214 (316)
T KOG3894|consen 151 VLACLDIKYVE--SKFQTIQNER-LSKDNKENTLSER--ADDNRSLADSELGQDEEKHYEDP------LSKEQ-----VQ 214 (316)
T ss_pred hHhhcchhhcc--Cchhhhhhhc-chhhhHHHHHhhc--chhhhcccchhhcCcccccCCcc------ccHHH-----HH
Confidence 21110000000 0000000000 0000000000000 00000000000000000000000 00111 12
Q ss_pred hhchhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 294 LYEDQS---EQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 294 L~e~~q---d~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
+++..+ .+.+++-.+++++||+.++|++.|-.-++.-|.+|..-||.|-.++..+..+|+.||+++.+|...
T Consensus 215 ~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~ 289 (316)
T KOG3894|consen 215 LLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRN 289 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHh
Confidence 222222 234455669999999999999999999999999999999999999999999999999999999877
No 13
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=98.35 E-value=1.8e-05 Score=74.59 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC--C--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q psy3554 99 YGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFND--K--PTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISS 174 (672)
Q Consensus 99 ~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD--~--s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s 174 (672)
+++|+..++.|..+|..++..+..|.+|+++..--.| . ..+++.+...|+..+..++..|+.|+..........
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~-- 78 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALN-- 78 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--
Confidence 4789999999999999999999999999998433333 2 378999999999999999999999987654322110
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3554 175 GHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQ 221 (672)
Q Consensus 175 ~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreq 221 (672)
+.....+..+.+..|..+|.++...|+.++..+.+..|.+-.|+-.
T Consensus 79 -~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~ 124 (151)
T cd00179 79 -GSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLE 124 (151)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223567899999999999999999999999888888877766643
No 14
>KOG3202|consensus
Probab=97.91 E-value=0.01 Score=61.60 Aligned_cols=191 Identities=15% Similarity=0.176 Sum_probs=113.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcc
Q psy3554 98 NYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQ 177 (672)
Q Consensus 98 ~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~sk 177 (672)
..+.|+..-.++.+....+...+.+-..+.+. -..+++++|..|++.+...-..|+.+.......... ....+
T Consensus 4 ~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~------~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~-~~ide 76 (235)
T KOG3202|consen 4 SEDPFFRVKNETLKLSEEIQGLYQRRSELLKD------TGSDAEELTSVLRRSIEEDLEDLDELISILERNPSK-FGIDE 76 (235)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCccc-ccCcH
Confidence 35678888777777777777777766665555 346788888888877777777777666554332211 11123
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCc
Q psy3554 178 HLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMS 257 (672)
Q Consensus 178 qe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreqFs~~~~~~~lp~sas~~~~~~~S~LldEe~esg~va 257 (672)
-+..-+++-+..+.+++..+-..|.. + ..... ..|..... ++ .+ +.+.+...+.. +
T Consensus 77 ~El~~R~~~i~~lr~q~~~~~~~~~~-~-~~~~~----~~r~~l~~--------~~-~~-------~~~~~~~~~~~--~ 132 (235)
T KOG3202|consen 77 FELSRRRRFIDNLRTQLRQMKSKMAM-S-GFANS----NIRDILLG--------PE-KS-------PNLDEAMSRAS--G 132 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-h-ccccc----cchhhhcC--------CC-CC-------CchhhhHHHhh--c
Confidence 34556777888888887777766655 1 00000 00110000 00 00 00011100000 0
Q ss_pred chHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy3554 258 DTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEM 337 (672)
Q Consensus 258 iD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL~e~~qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEM 337 (672)
.|. . ....+. +...+++-++.+..|+.||.-+.++=..|+.=+.+||.+
T Consensus 133 ~D~--------v-----------~~~~~~------------qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~l 181 (235)
T KOG3202|consen 133 LDN--------V-----------QEIVQL------------QQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRL 181 (235)
T ss_pred cCc--------H-----------HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 000 0 011111 112346666899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy3554 338 VERIDANILDTEL 350 (672)
Q Consensus 338 IDRID~NVEdA~~ 350 (672)
||..|.-++.+..
T Consensus 182 lDdl~~e~d~t~s 194 (235)
T KOG3202|consen 182 LDDLDNEMDRTES 194 (235)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988888
No 15
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=96.44 E-value=0.094 Score=46.58 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchHHH
Q psy3554 109 IGKNISSTYAKLEKLTLLAKRKSLFNDKP---TEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSS 185 (672)
Q Consensus 109 I~kdIs~ts~KLeKLaqLaKRksLFDD~s---~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskN 185 (672)
|+..|..++..+..|.++.+.-+-..|.+ ..|..+...+++.+..+...|+.|...... .....+...
T Consensus 1 is~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~---------~~~~~~~k~ 71 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSD---------RSNDRQQKL 71 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH-------------HHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhHHHHH
Confidence 57788999999999999999877667775 788999999999999999999999876110 112345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 186 VVLALQSKLASMSTEFKNVLEVRTENL 212 (672)
Q Consensus 186 VV~sLqsKLq~LS~~FKdVLE~RTenL 212 (672)
...-|...+..+...|+.+++.+.+.+
T Consensus 72 ~~~KL~~df~~~l~~fq~~q~~~~~~~ 98 (102)
T PF14523_consen 72 QREKLSRDFKEALQEFQKAQRRYAEKE 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777777777777776554443
No 16
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery. This allows for participation in late fusion steps []. ; PDB: 1MQS_B.
Probab=93.48 E-value=0.026 Score=40.87 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=15.8
Q ss_pred c-chhHHHHHHHHHHhccccc
Q psy3554 62 P-RERTLEFNNVIRSLQGKNI 81 (672)
Q Consensus 62 s-RDRT~EF~S~v~s~q~r~~ 81 (672)
+ +|||.||+.++.++.+++.
T Consensus 3 ~IqdRT~EFqqcV~s~~k~nk 23 (29)
T PF11416_consen 3 SIQDRTIEFQQCVSSYKKRNK 23 (29)
T ss_dssp HHHB-HHHHHHHHHHHHHH--
T ss_pred chhHhhHHHHHHHHHHHHHHh
Confidence 5 9999999999999987764
No 17
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=92.73 E-value=0.27 Score=43.09 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=46.0
Q ss_pred chhHHHHHHHHHHhcccccccccccch-hhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 63 RERTLEFNNVIRSLQGKNIVRAVAAKD-VRRAQFVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLA 127 (672)
Q Consensus 63 RDRT~EF~S~v~s~q~r~~~~~~s~~~-~~~a~~~~~~sEF~~~AeeI~kdIs~ts~KLeKLaqLa 127 (672)
.|+|.+|+++|...+..+......... ...........+|.++|.+|...|.++...|.++..-.
T Consensus 1 ~DlT~lF~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~Y 66 (87)
T PF10496_consen 1 TDLTPLFKACVKIIRTENKASGKAPSDSSKIRPKTKPKDEFLKEAYRILSHITSLRKFLKSIRKAY 66 (87)
T ss_pred CCccHHHHHHHHHHHhhccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999988554321110000 11112346688999999999999999999999987643
No 18
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=92.69 E-value=2 Score=37.60 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy3554 308 DTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTEL 350 (672)
Q Consensus 308 eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~ 350 (672)
+.+.+|++.+.|+.++..+=-..+.|-||-|+.++.+.++-..
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~ 45 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSD 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 4577888888888888888888888999999999998877776
No 19
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=91.10 E-value=4.2 Score=42.39 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy3554 307 ADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTEL 350 (672)
Q Consensus 307 ~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~ 350 (672)
.++|..+.+.+.+=+..|++ .+.+-..+|++.+..++....
T Consensus 169 ~~em~~La~~LK~~s~~~~~---~l~~D~~~L~~~~~~~d~n~~ 209 (251)
T PF09753_consen 169 TEEMLSLARQLKENSLAFSQ---ILKEDNKVLDRTEEGLDRNLS 209 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888877777654 788999999999999988888
No 20
>KOG3385|consensus
Probab=91.05 E-value=1.6 Score=41.26 Aligned_cols=48 Identities=10% Similarity=0.270 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy3554 305 SRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHV 352 (672)
Q Consensus 305 qR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~V 352 (672)
+-+++++++.+-|.-|-.+=-++..=|..|.-++|++|...+.+....
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L 80 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFL 80 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHH
Confidence 334677788888888888889999999999999999999999999844
No 21
>KOG0811|consensus
Probab=90.19 E-value=30 Score=37.22 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=39.4
Q ss_pred ccchhhcccccchhhhHHHHHHHHHHH--HhhhccchHHHHHHHHHHHHHHHHHHHHh
Q psy3554 400 ETYTEIDANILDTELHVESAHREILKY--FQSVTSNRWLMIKIFAVLIFFFIFFVVFL 455 (672)
Q Consensus 400 ~~~~~~~~~~~~~~~nv~~a~~ellky--~~~vssnR~L~~Kif~vl~~f~~~fv~f~ 455 (672)
++.+-|++||--|..||+.|-.+|-|. |+.=.+...+++.+|++.+.|++++++..
T Consensus 208 ~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~v~lii~l~i~~ 265 (269)
T KOG0811|consen 208 ELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGPVGLIIGLIIAG 265 (269)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHH
Confidence 455668888888888999999999874 44444444466777777777776666543
No 22
>KOG0810|consensus
Probab=89.68 E-value=32 Score=37.47 Aligned_cols=251 Identities=15% Similarity=0.126 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccc
Q psy3554 104 LIAKTIGKNISSTYAKLEKLTLLAKR----KSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHL 179 (672)
Q Consensus 104 ~~AeeI~kdIs~ts~KLeKLaqLaKR----ksLFDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe 179 (672)
...++.-+++..++..+++|....++ ++.+-..+....++...+...+..+.+.-..++...+...+. ..+.
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~----~~~~ 108 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKE----NEAD 108 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhc
Confidence 44677788888888888888887776 444555556666666666666555555555555443332211 1111
Q ss_pred cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCc
Q psy3554 180 LS--HSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMS 257 (672)
Q Consensus 180 ~~--HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreqFs~~~~~~~lp~sas~~~~~~~S~LldEe~esg~va 257 (672)
.. -..+....=+++...+++.|++++..|.+.-..++++.+......-... .+....+++
T Consensus 109 ~~~~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~-----------~~~~~~de~------- 170 (297)
T KOG0810|consen 109 ETQNRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIV-----------GGEETTDEE------- 170 (297)
T ss_pred cccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------CCCcCChHH-------
Confidence 11 2344555667899999999999999887777777776654433211110 011111111
Q ss_pred chHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhhhchhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3554 258 DTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRA---DTMQNIESTIVELGGIFQQLAHMVQEQ 334 (672)
Q Consensus 258 iD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL~e~~qd~yIQqR~---eeIqnIESTI~ELgqIFqQLAtMV~EQ 334 (672)
++ .+.. ++..+. +.........+.- .||+.=-..|.+|-.--.+|..|.-+=
T Consensus 171 ie-----------~~ie------~g~~~~--------f~~~~i~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDM 225 (297)
T KOG0810|consen 171 IE-----------EMIE------SGGSEV--------FTQKAIQDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDM 225 (297)
T ss_pred HH-----------HHHH------CCChHH--------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1110 010110 0000001112222 344444455666666677777777776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCccccccccccccccceeeeccCCCCCCccchhhcccccchhh
Q psy3554 335 EEMVERIDANILDTELHVESAHRDQNICISTKTQAHGDQNTWISTKTQACEDTVRVTVPNKKYKSETYTEIDANILDTEL 414 (672)
Q Consensus 335 GEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (672)
..+|+-=.+.|+++..+|+.| ..
T Consensus 226 a~LVe~QgEmvd~IE~nV~~A---------------------------------------------------------~~ 248 (297)
T KOG0810|consen 226 AVLVESQGEMVDRIENNVENA---------------------------------------------------------VD 248 (297)
T ss_pred HHHHHHHHhHHHHHHHHHHHH---------------------------------------------------------HH
Confidence 667766666666666655444 44
Q ss_pred hHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q psy3554 415 HVESAHREILKYFQSVTSNRWLMIKIFAVLIFFFIFFVVFLAHN 458 (672)
Q Consensus 415 nv~~a~~ellky~~~vssnR~L~~Kif~vl~~f~~~fv~f~a~~ 458 (672)
+|+.|..++=|.-..-+.+|--++-++.+++++++++|+++.++
T Consensus 249 ~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~ 292 (297)
T KOG0810|consen 249 YVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVP 292 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhccc
Confidence 78888888887777777777666666667777777777776653
No 23
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=87.85 E-value=2.4 Score=44.52 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy3554 307 ADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESA 355 (672)
Q Consensus 307 ~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a 355 (672)
-.|+++=-+.|.-|-.+..+|+.|..+=.|||.-=..|||....+|+.|
T Consensus 177 L~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~ 225 (280)
T COG5074 177 LAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDA 225 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhH
Confidence 3567777778888889999999999999999988888887777755433
No 24
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=87.60 E-value=5.9 Score=35.53 Aligned_cols=63 Identities=13% Similarity=0.247 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3554 101 EFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKH 167 (672)
Q Consensus 101 EF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~ 167 (672)
-|+...++|...|..+...+.+...+..... ...++..++.+++..+..++..|.+|+..+..
T Consensus 2 PF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 2 PFFVVKDEVQSSLDRLESLYRRWQRLRSDTS----SSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcccCC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888777777655544433 66899999999999999999999999987653
No 25
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=84.37 E-value=11 Score=40.56 Aligned_cols=30 Identities=30% Similarity=0.287 Sum_probs=25.3
Q ss_pred ccchhhcccccchhhhHHHHHHHHHHHHhh
Q psy3554 400 ETYTEIDANILDTELHVESAHREILKYFQS 429 (672)
Q Consensus 400 ~~~~~~~~~~~~~~~nv~~a~~ellky~~~ 429 (672)
+-.|-||.||-.|-.|.++|-+||-|.-+.
T Consensus 223 ~lVdrID~Ni~~t~~n~k~A~kEL~kA~~h 252 (283)
T COG5325 223 ELVDRIDFNIENTSDNLKNANKELEKAPAH 252 (283)
T ss_pred hhhhHHhhhhhhhhHHHHhhHHHHHHhHHH
Confidence 345679999999999999999999986543
No 26
>KOG0860|consensus
Probab=79.65 E-value=32 Score=32.78 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy3554 309 TMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTEL 350 (672)
Q Consensus 309 eIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~ 350 (672)
.+++.+..+.|+-+|.++=-.=|-|=||-|+.+|+-.|+-+.
T Consensus 30 k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~ 71 (116)
T KOG0860|consen 30 KLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQA 71 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHH
Confidence 345555667777888888778888889888888875554443
No 27
>KOG1666|consensus
Probab=78.98 E-value=89 Score=32.78 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3554 137 PTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQ 168 (672)
Q Consensus 137 s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~ 168 (672)
..|=..+-..|++.+...+.-|.+++-.++.-
T Consensus 31 ~~ekk~~l~~i~~~leEa~ell~qMdlEvr~l 62 (220)
T KOG1666|consen 31 GSEKKQLLSEIDSKLEEANELLDQMDLEVREL 62 (220)
T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 34555666788888999999999988776543
No 28
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=72.31 E-value=54 Score=29.32 Aligned_cols=107 Identities=10% Similarity=0.124 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchH
Q psy3554 108 TIGKNISSTYAKLEKLTLLAKR----KSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHS 183 (672)
Q Consensus 108 eI~kdIs~ts~KLeKLaqLaKR----ksLFDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~Hs 183 (672)
+.-..+..+...|.+|.....+ ..-.......-.++...+...+..++...+.+....+..... ........
T Consensus 5 ~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~----~~~~~~~~ 80 (117)
T smart00503 5 EFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKE----NLENRASG 80 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHhhcccC
Confidence 3445667777777777654443 111322223233444444455555555555554444332210 00000001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3554 184 SSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSR 218 (672)
Q Consensus 184 kNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeR 218 (672)
....+..+.....++.+|++++..|....+..++|
T Consensus 81 ~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 115 (117)
T smart00503 81 SASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYRER 115 (117)
T ss_pred CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455667888899999999998877766655544
No 29
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=70.69 E-value=45 Score=27.50 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy3554 310 MQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICI 363 (672)
Q Consensus 310 IqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~ 363 (672)
+.+-.+.+.|.-++=.+......+|+|.|.++...+.++..++..++.-|+.-.
T Consensus 10 L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 10 LQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444555555566667789999999999999999999999988776543
No 30
>KOG3065|consensus
Probab=70.46 E-value=15 Score=39.45 Aligned_cols=57 Identities=14% Similarity=0.322 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3554 305 SRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNI 361 (672)
Q Consensus 305 qR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~ 361 (672)
+=++.+.+|-+-+..|-.|=-+|++=|..|.+.||||.++|+.....|+.++..+++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 344667777788888888889999999999999999999999999999999987764
No 31
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=69.54 E-value=2.9 Score=39.41 Aligned_cols=36 Identities=25% Similarity=0.665 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCcee
Q psy3554 434 RWLMIKIFAVLIFFFIFFVVFLAHNCKNIESSTPPYFT 471 (672)
Q Consensus 434 R~L~~Kif~vl~~f~~~fv~f~a~~~~~~~~~~~~~~~ 471 (672)
||+++-||.| +|||||++|+.|+.+....-+.|.--
T Consensus 1 RW~l~~iii~--~i~l~~~~~~~~~rRR~r~G~~P~~g 36 (130)
T PF12273_consen 1 RWVLFAIIIV--AILLFLFLFYCHNRRRRRRGLQPIYG 36 (130)
T ss_pred CeeeHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCcCC
Confidence 6776544333 34455567777888877766666543
No 32
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=67.63 E-value=58 Score=30.61 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc-cC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchH
Q psy3554 108 TIGKNISSTYAKLEKLTLLAKRK-SL---FNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHS 183 (672)
Q Consensus 108 eI~kdIs~ts~KLeKLaqLaKRk-sL---FDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~Hs 183 (672)
+.-..+..+...|.+|......- .+ +.....+-+++...+...+..++.....+....+.-... .........
T Consensus 3 ~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~---~~~~~~~~~ 79 (151)
T cd00179 3 EFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEES---NEQNEALNG 79 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcccCC
Confidence 34566778888888887665541 11 222222233444444444555555555554444332210 000000012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy3554 184 SSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQY 222 (672)
Q Consensus 184 kNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreqF 222 (672)
....+.-+.+...++..|++++..|.......+++....
T Consensus 80 s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~ 118 (151)
T cd00179 80 SSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKER 118 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667788999999999999998888777777665543
No 33
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.12 E-value=64 Score=31.07 Aligned_cols=85 Identities=15% Similarity=0.258 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcc
Q psy3554 99 YGEFMLIAKTIGKNISSTYAKLEKLTL-LAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQ 177 (672)
Q Consensus 99 ~sEF~~~AeeI~kdIs~ts~KLeKLaq-LaKRksLFDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~sk 177 (672)
+..+.+.+..|++.|.++.+.|..-++ |.+|---.|++-+|..+++..|+.+...+...+..+....+
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~----------- 106 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVD----------- 106 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----------
Confidence 344566777788888888877776332 23332235677788888999999999999888888876432
Q ss_pred cccchHHHHHHHHHHHHHHHH
Q psy3554 178 HLLSHSSSVVLALQSKLASMS 198 (672)
Q Consensus 178 qe~~HskNVV~sLqsKLq~LS 198 (672)
--..+|..|..|+..+.
T Consensus 107 ----~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 107 ----SVQQMVEGLEGKIDEIE 123 (126)
T ss_pred ----HHHHHHHHHHHHHHHHh
Confidence 23457778888876653
No 34
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=64.87 E-value=3.4e+02 Score=33.37 Aligned_cols=45 Identities=20% Similarity=0.415 Sum_probs=25.9
Q ss_pred cccchhhhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q psy3554 408 NILDTELHVESAHREILKYFQSVTSNRWLMIKIFAVLIFFFIFFV 452 (672)
Q Consensus 408 ~~~~~~~nv~~a~~ellky~~~vssnR~L~~Kif~vl~~f~~~fv 452 (672)
++.|...+++..-+....+++....-||++--+...+++.+++|.
T Consensus 387 ~~s~~~~~~~~~~~~~~~~~~~y~~yR~~~~lil~~~llLIv~~~ 431 (806)
T PF05478_consen 387 NISDILNNTERSSRSFEDEYEKYDSYRWIVGLILCCVLLLIVLCL 431 (806)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444455666677889998777666555544443
No 35
>KOG3850|consensus
Probab=63.53 E-value=2.3e+02 Score=32.24 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 306 RADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 306 R~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
|.+-++.+-....||+ -.++++|=+|+..|-.||+|.--+=..+|+.+.+-++..+..
T Consensus 307 R~erLEEqLNdlteLq--QnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisK 364 (455)
T KOG3850|consen 307 RYERLEEQLNDLTELQ--QNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISK 364 (455)
T ss_pred HHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555 368999999999999999998777777777777666555443
No 36
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=62.37 E-value=2.9e+02 Score=31.70 Aligned_cols=57 Identities=16% Similarity=0.303 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 302 FIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRD 358 (672)
Q Consensus 302 yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~e 358 (672)
.+++=.+.+.+|...+.++.+.+.+++..+.+|.+.++.|..++++...-+++....
T Consensus 432 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~ 488 (553)
T PRK15048 432 LVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNASL 488 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556788999999999999999999999999999999999998888766643333
No 37
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=62.10 E-value=5.1 Score=37.75 Aligned_cols=17 Identities=18% Similarity=0.586 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3554 435 WLMIKIFAVLIFFFIFF 451 (672)
Q Consensus 435 ~L~~Kif~vl~~f~~~f 451 (672)
|++|-++++|+||++++
T Consensus 5 ~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYC 21 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555443
No 38
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=56.80 E-value=3.7e+02 Score=31.18 Aligned_cols=55 Identities=16% Similarity=0.340 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy3554 300 EQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVES 354 (672)
Q Consensus 300 d~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~ 354 (672)
...+++=.+.+..|...+.++.+++.+++..+.||...++.|..++++...-+++
T Consensus 432 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 432 STLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666788999999999999999999999999999999999998877665544
No 39
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.33 E-value=99 Score=35.34 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 302 FIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 302 yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
-+.+=..+|...++.|.+..+-+++|..++.+|.+-+.+|+.-+-++...+++-.+.+...+.+
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 3455568999999999999999999999999999999999999999998554444444443333
No 40
>KOG3065|consensus
Probab=52.76 E-value=63 Score=34.87 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 308 DTMQNIESTIVELGGIF------QQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 308 eeIqnIESTI~ELgqIF------qQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
.+...++||..-|.-+. ..-..|..+|||.|+||+.|+++.......|.+.|.--..-
T Consensus 73 ~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~ 136 (273)
T KOG3065|consen 73 TAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGL 136 (273)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34455555554444332 35566788999999999999999999888888877665554
No 41
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=50.43 E-value=1.8e+02 Score=25.79 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhccchHHHH
Q psy3554 416 VESAHREILKYFQSVTSNRWLMI 438 (672)
Q Consensus 416 v~~a~~ellky~~~vssnR~L~~ 438 (672)
+..+.+=|=+|-++-...||++.
T Consensus 52 l~~s~~ll~~l~r~~~~D~~li~ 74 (92)
T PF03908_consen 52 LKKSRKLLKKLERRDKTDRILIF 74 (92)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 33344444444455555666665
No 42
>PF14992 TMCO5: TMCO5 family
Probab=50.13 E-value=1.7e+02 Score=31.79 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3554 305 SRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHR 357 (672)
Q Consensus 305 qR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~ 357 (672)
.-..+|.++++...+++++=.|=|+-+.+=-|.+.||+.-.|....+.+-+..
T Consensus 127 ~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~k~ 179 (280)
T PF14992_consen 127 SQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELSKY 179 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888888888888888877778889999888877774443333
No 43
>PRK00295 hypothetical protein; Provisional
Probab=48.11 E-value=1.1e+02 Score=26.32 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy3554 310 MQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESA 355 (672)
Q Consensus 310 IqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a 355 (672)
|..+|..+.-.-..-.+|...|.+|.-.|++....+......+...
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7778888888888888888899999999999888877776655443
No 44
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=47.09 E-value=2e+02 Score=25.32 Aligned_cols=85 Identities=21% Similarity=0.230 Sum_probs=50.2
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 125 LLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNV 204 (672)
Q Consensus 125 qLaKRksLFDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskNVV~sLqsKLq~LS~~FKdV 204 (672)
.|.+.....+. +.+-.+|...|......++..++.+....+.... .......-...+.....++.+|+.+
T Consensus 14 ~l~k~~~~lGt-~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~---------~~~~~~~~~~~k~~~~KL~~df~~~ 83 (102)
T PF14523_consen 14 QLEKLVNQLGT-PRDSQELREKIHQLIQKTNQLIKEISELLKKLNS---------LSSDRSNDRQQKLQREKLSRDFKEA 83 (102)
T ss_dssp HHHHHHHHH-S-SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------SH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33333444553 3566777777777777777777777765543220 0112333344567778999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy3554 205 LEVRTENLKQAKSRR 219 (672)
Q Consensus 205 LE~RTenLKaqkeRr 219 (672)
+..+....+...++.
T Consensus 84 l~~fq~~q~~~~~~~ 98 (102)
T PF14523_consen 84 LQEFQKAQRRYAEKE 98 (102)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 988877766665554
No 45
>KOG0812|consensus
Probab=46.22 E-value=1.3e+02 Score=33.01 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q psy3554 99 YGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFND 135 (672)
Q Consensus 99 ~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD 135 (672)
+-|..+..--|..+|..++..+.+|..+.+...-..+
T Consensus 78 ~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~ 114 (311)
T KOG0812|consen 78 PVEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSN 114 (311)
T ss_pred chhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccc
Confidence 3366677778899999999999999998866444343
No 46
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.12 E-value=3.4e+02 Score=28.23 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=63.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhccc
Q psy3554 98 NYGEFMLIAKTIGKNISSTYAKLEKLTLLAKR-KSLFNDKPTEIQELTYIIKE-------DLNSLNQQIAKLQQVGKHQR 169 (672)
Q Consensus 98 ~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKR-ksLFDD~s~EIeELT~~IKq-------dI~sLn~qIk~LQ~~~k~~~ 169 (672)
...+|.+........+..+...++.|....++ ....++...+|++|...|.+ ..--+.+-++.|+.++...-
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~ 122 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDL 122 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35678888888888888888888887775555 22244444455555444432 23334455566666555332
Q ss_pred ccccCCcccccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy3554 170 DVISSGHQHLLSHSSSVVLALQSKLA----SMSTEFKNVLEVRTENLK 213 (672)
Q Consensus 170 ~~~~s~skqe~~HskNVV~sLqsKLq----~LS~~FKdVLE~RTenLK 213 (672)
+ . . ..-+..=+..|+.-+. ..+..|+.+++.+...+.
T Consensus 123 P--f---~--~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~~E~~ 163 (251)
T PF11932_consen 123 P--F---L--LEERQERLARLRAMLDDADVSLAEKFRRVLEAYQIEME 163 (251)
T ss_pred C--C---C--hHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 1 0 1 1112233355555553 677889999998765443
No 47
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=39.88 E-value=1.7e+02 Score=22.66 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 312 NIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 312 nIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
.-+..+..|...-.+|..|..+=+.+|..=..-++.+..+++.+...++.|.+.
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~ 56 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKR 56 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777677777777777777777766554
No 48
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=38.85 E-value=3.1e+02 Score=26.63 Aligned_cols=61 Identities=15% Similarity=0.304 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3554 302 FIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNIC 362 (672)
Q Consensus 302 yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A 362 (672)
.+.+=.+.+..|...+.++...+.+++.-+.+|.+.+..|...+++....++......+..
T Consensus 129 ~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~ 189 (213)
T PF00015_consen 129 SVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISASSEEI 189 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456677777788888888888888888888877777777766666555554444433
No 49
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.12 E-value=1.5e+02 Score=25.22 Aligned_cols=49 Identities=12% Similarity=0.265 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy3554 308 DTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAH 356 (672)
Q Consensus 308 eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~ 356 (672)
+.|..+|.-+.-.-..-.+|...|.+|...|++...-+......+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777778888888888888999999999999988887777655443
No 50
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=35.88 E-value=4.5e+02 Score=26.11 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=15.8
Q ss_pred hhcccccchhhhHHHHHHHHHHHH
Q psy3554 404 EIDANILDTELHVESAHREILKYF 427 (672)
Q Consensus 404 ~~~~~~~~~~~nv~~a~~ellky~ 427 (672)
.||..|-+...-+|++.-+++||.
T Consensus 135 ki~~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 135 KIDTEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555557888888888664
No 51
>KOG3208|consensus
Probab=33.97 E-value=6e+02 Score=27.02 Aligned_cols=110 Identities=12% Similarity=0.118 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy3554 99 YGEFMLIAKTIGKNISSTYAKLEKLTLLAKR-KSLFNDKP-------TEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRD 170 (672)
Q Consensus 99 ~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKR-ksLFDD~s-------~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~ 170 (672)
.+-|-..-++....=.++..||-+..+|... ..-|++.. ..-..+..+|+..+.++.+-+.++.. +...
T Consensus 4 ~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~-~~~s-- 80 (231)
T KOG3208|consen 4 SSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND-CASS-- 80 (231)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh-hccC--
Confidence 3455554444445556666777777777766 22244321 23456677788888888777777776 1111
Q ss_pred cccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3554 171 VISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQ 221 (672)
Q Consensus 171 ~~~s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreq 221 (672)
.....+.......-+..|++-+++|+.+. .++.+.++|...
T Consensus 81 ------~a~~aa~~htL~RHrEILqdy~qef~rir----~n~~a~~e~~~L 121 (231)
T KOG3208|consen 81 ------PANSAAVMHTLQRHREILQDYTQEFRRIR----SNIDAKRERESL 121 (231)
T ss_pred ------CCCcHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 11112222333334578999999999985 345555555443
No 52
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=33.78 E-value=3.1e+02 Score=23.53 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchHHHHHHHHHHHHHHHH
Q psy3554 137 PTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMS 198 (672)
Q Consensus 137 s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskNVV~sLqsKLq~LS 198 (672)
..+|..+...++..|..+......... . .. +..+...+.|.+..|..+|+++.
T Consensus 51 ~~~i~~~~~~~~~~lk~l~~~~~~~~~--~-~~------~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 51 TDEIKQLFQKIKKRLKQLSKDNEDSEG--E-EP------SSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--T-T--------SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc--c-CC------CcHHHHHHHHHHHHHHHHHHHHC
Confidence 478888888999999999988772221 1 11 12457899999999999999874
No 53
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=33.30 E-value=31 Score=30.09 Aligned_cols=14 Identities=50% Similarity=1.132 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q psy3554 440 IFAVLIFFFIFFVV 453 (672)
Q Consensus 440 if~vl~~f~~~fv~ 453 (672)
+||||+++++|||+
T Consensus 14 ~fA~LFv~Ll~yvl 27 (71)
T PF10960_consen 14 IFAVLFVWLLFYVL 27 (71)
T ss_pred cHHHHHHHHHHHHH
Confidence 78999888888875
No 54
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=32.05 E-value=49 Score=30.25 Aligned_cols=29 Identities=34% Similarity=0.700 Sum_probs=18.1
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q psy3554 421 REILKYFQSVTSNRWLMIKIFAVLIFFFIFFV 452 (672)
Q Consensus 421 ~ellky~~~vssnR~L~~Kif~vl~~f~~~fv 452 (672)
.=|-.-|.--.|++|- =|+||+.|++||+
T Consensus 35 ~YL~~~y~y~~sh~WR---N~GIli~f~i~f~ 63 (103)
T PF06422_consen 35 DYLEESYGYSYSHRWR---NFGILIAFWIFFI 63 (103)
T ss_pred HHHhhhccccccchhh---hHHHHHHHHHHHH
Confidence 3444466677899997 5555555555554
No 55
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=30.09 E-value=3e+02 Score=24.35 Aligned_cols=54 Identities=9% Similarity=0.165 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 312 NIESTIVELGGIFQQLAHMVQ-EQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 312 nIESTI~ELgqIFqQLAtMV~-EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
+.+..-.++..-|.+|-.++. ...+++++||..-++....+..-...+......
T Consensus 36 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~ 90 (127)
T smart00502 36 NAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555667777888877775 556788888887777666665555555554444
No 56
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=29.18 E-value=3.2e+02 Score=30.49 Aligned_cols=60 Identities=10% Similarity=0.208 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 138 TEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNV 204 (672)
Q Consensus 138 ~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskNVV~sLqsKLq~LS~~FKdV 204 (672)
+|+.++.......+.+-.+++++|....++.++. ........+..|+..+++....|.++
T Consensus 28 eel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~-------~~~e~~~~i~~L~~~Ik~r~~~l~Dm 87 (330)
T PF07851_consen 28 EELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS-------LSAEERELIEKLEEDIKERRCQLFDM 87 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CChhHHHHHHHHHHHHHHHHhhHHHH
Confidence 4444444444444555444555544433332210 01122344444555555554444444
No 57
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.56 E-value=5.5e+02 Score=27.09 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3554 132 LFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQV 164 (672)
Q Consensus 132 LFDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~ 164 (672)
.|.|+-.+.-.+.+.||.-+..=...+.++++.
T Consensus 102 tl~d~L~~~~~~~~~vKealtnR~~~~re~~qA 134 (230)
T cd07625 102 TLYDGLEWISRDAYVVKEALTNRHLLMRELIQA 134 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888888899999998777666666655543
No 58
>KOG4552|consensus
Probab=28.41 E-value=3.9e+02 Score=28.25 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=10.3
Q ss_pred HHHHHHHhhhcc
Q psy3554 421 REILKYFQSVTS 432 (672)
Q Consensus 421 ~ellky~~~vss 432 (672)
.||.||-.+||+
T Consensus 129 EelIKyAHrIS~ 140 (272)
T KOG4552|consen 129 EELIKYAHRISK 140 (272)
T ss_pred HHHHHHHHHhhh
Confidence 589999999885
No 59
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.50 E-value=5.9e+02 Score=24.86 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 138 TEIQELTYIIKEDLNSLNQQIAKLQQ 163 (672)
Q Consensus 138 ~EIeELT~~IKqdI~sLn~qIk~LQ~ 163 (672)
.|+.......++.+..+..+|..|+.
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666667777788888888875
No 60
>PHA03332 membrane glycoprotein; Provisional
Probab=27.46 E-value=4.8e+02 Score=33.49 Aligned_cols=25 Identities=12% Similarity=0.441 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3554 140 IQELTYIIKEDLNSLNQQIAKLQQV 164 (672)
Q Consensus 140 IeELT~~IKqdI~sLn~qIk~LQ~~ 164 (672)
|..++......|...|.+|.+|+..
T Consensus 921 i~kisatl~~nI~avNgRIs~Led~ 945 (1328)
T PHA03332 921 IAKISATLDNNIRAVNGRVSDLEDQ 945 (1328)
T ss_pred HHHHHHHHHhhHHHhcccHHHHHHH
Confidence 4444444444444444444444443
No 61
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=27.43 E-value=81 Score=26.69 Aligned_cols=20 Identities=15% Similarity=0.735 Sum_probs=9.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q psy3554 431 TSNRWLMIKIFAVLIFFFIFFVV 453 (672)
Q Consensus 431 ssnR~L~~Kif~vl~~f~~~fv~ 453 (672)
...||++ |+++|+|+++|++
T Consensus 36 ~~~~~i~---~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 36 RKTQYIF---FGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHH---HHHHHHHHHHHHH
Confidence 3345544 4555555555544
No 62
>KOG2348|consensus
Probab=26.77 E-value=75 Score=37.01 Aligned_cols=61 Identities=28% Similarity=0.362 Sum_probs=39.9
Q ss_pred ceeeeccCCCCCCccchhhcccccchh--hhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q psy3554 387 TVRVTVPNKKYKSETYTEIDANILDTE--LHVESAHREILKYFQSVTSNRWLMIKIFAVLIFFFIFFVVF 454 (672)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~nv~~a~~ellky~~~vssnR~L~~Kif~vl~~f~~~fv~f 454 (672)
-+..++|+++|.-+++.||-.-=-|.+ .-|+.-+.|. .=||.|-|-+|.-|||+|+|-|+.
T Consensus 510 ilsy~f~pqn~D~n~l~e~~~v~~~a~~~E~~d~e~ek~-------kl~Ra~~i~~~~~li~t~~~viiw 572 (667)
T KOG2348|consen 510 ILSYFFPPQNYDWNNLNEIFVVGDDAEAEEIVDAEQEKK-------KLNRALRIGIFVSLIITFAFVIIW 572 (667)
T ss_pred eeeEecCCccCchhhhhheEEeccccccchhcchhHHHH-------HHhhhhhHHHHHHHHHHHHHHhhc
Confidence 345568999999999988743322222 0222223332 447999999999998888765553
No 63
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=26.20 E-value=22 Score=33.44 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=3.7
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCceeeec
Q psy3554 430 VTSNRWLMIKIFAVLIFFFIFFVVFLAHNCKNIESSTPPYFTCNK 474 (672)
Q Consensus 430 vssnR~L~~Kif~vl~~f~~~fv~f~a~~~~~~~~~~~~~~~~~~ 474 (672)
+..|+|++.-++++++++|+|+ |.+..|.+...+..+...+|.
T Consensus 5 ~r~~~~~~~~~~~iv~~~~~l~--~~~~~~~~~~~~~~~vA~V~g 47 (154)
T PF13624_consen 5 IRKNSKVFKILIGIVLAIFVLA--FGIGGCGSGSSNNNVVAKVNG 47 (154)
T ss_dssp --------------------------------------EEEEETT
T ss_pred cccchhhhhhhHHHHHHHHHHH--HHHHHHhccCCCCCEEEEECC
Confidence 3447786665555554444443 444445443344455555553
No 64
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=25.98 E-value=51 Score=26.76 Aligned_cols=18 Identities=28% Similarity=0.681 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3554 437 MIKIFAVLIFFFIFFVVF 454 (672)
Q Consensus 437 ~~Kif~vl~~f~~~fv~f 454 (672)
++|.+-++|+|+.+|+|-
T Consensus 4 ilKFvY~mIiflslflv~ 21 (54)
T PF07127_consen 4 ILKFVYAMIIFLSLFLVV 21 (54)
T ss_pred chhhHHHHHHHHHHHHhh
Confidence 578888888887777664
No 65
>PRK00736 hypothetical protein; Provisional
Probab=25.83 E-value=3.5e+02 Score=23.21 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy3554 310 MQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVES 354 (672)
Q Consensus 310 IqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~ 354 (672)
|..+|.-+.-.-..-.+|...|.+|.-.|+++..-+......+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777888889998888888777766665433
No 66
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=25.74 E-value=4.4e+02 Score=28.86 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy3554 99 YGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQ 156 (672)
Q Consensus 99 ~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD~s~EIeELT~~IKqdI~sLn~ 156 (672)
.+||.+.-+.-+.+|..|++-.+.|..|.+. .+||.+++..+++-+..+++
T Consensus 216 ksEWA~V~~AwkneLsEINSI~~gvEeLkKL-------AqEIss~Sn~lk~TIseLEK 266 (353)
T PF01540_consen 216 KSEWARVQEAWKNELSEINSIIKGVEELKKL-------AQEISSHSNKLKATISELEK 266 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888888888766665555443 46888888888877777663
No 67
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=25.66 E-value=2.8e+02 Score=23.44 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy3554 309 TMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELH 351 (672)
Q Consensus 309 eIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~ 351 (672)
+++.++.-+.+|-..|.....==..+++.++|+|.++|..-.+
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~ 44 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKY 44 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999876553
No 68
>KOG4559|consensus
Probab=25.31 E-value=1.7e+02 Score=27.55 Aligned_cols=48 Identities=27% Similarity=0.427 Sum_probs=31.0
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy3554 304 QSRADTMQN----IESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQ 359 (672)
Q Consensus 304 QqR~eeIqn----IESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL 359 (672)
.+|-.+|+. +.....||+.=|++|+-|.++ ||-|| ++.+.++.|..-|
T Consensus 64 aakY~DMk~iAEkla~k~deLn~KfenL~P~lqQ----IDaid----dst~kLEaAa~~L 115 (120)
T KOG4559|consen 64 AAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQ----IDAID----DSTDKLEAAAAKL 115 (120)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH----HHHHh----hHHHHHHHHHHHH
Confidence 455555554 456778999999999998864 33343 4555555555444
No 69
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=24.90 E-value=5.3e+02 Score=23.42 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3554 101 EFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVG 165 (672)
Q Consensus 101 EF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~ 165 (672)
-|...+.-|..++..+...+.-|.++.+..+. +=.++...+..+...+..++.+-..|+.+.
T Consensus 4 ~f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~---kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l 65 (99)
T PF10046_consen 4 MFSKVSKYVESELEATNEDYNLLENMNKATSL---KYKKMKDIAAGLEKNLEDLNQKYEELQPYL 65 (99)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888888777543 013455555566666666666665555544
No 70
>KOG0994|consensus
Probab=24.84 E-value=5.6e+02 Score=33.37 Aligned_cols=102 Identities=10% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccch
Q psy3554 104 LIAKTIGKNISSTYAKLEKLTLLAKRKSL-FNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSH 182 (672)
Q Consensus 104 ~~AeeI~kdIs~ts~KLeKLaqLaKRksL-FDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~H 182 (672)
..|.+....+..+....+..++|..++.. --+....++.|..+.++.+.+.+..++.|+.+..... .+++...-
T Consensus 1654 ~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~-----~~~~~L~~ 1728 (1758)
T KOG0994|consen 1654 EQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYL-----RNEQALED 1728 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 183 SSSVVLALQSKLASMSTEFKNVLEVRTE 210 (672)
Q Consensus 183 skNVV~sLqsKLq~LS~~FKdVLE~RTe 210 (672)
....+..|..++..+...-+.....|..
T Consensus 1729 ~~aeL~~Le~r~~~vl~~I~~rv~~y~t 1756 (1758)
T KOG0994|consen 1729 KAAELAGLEKRVESVLDHINERVLYYAT 1756 (1758)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhc
No 71
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=24.28 E-value=3.2e+02 Score=24.43 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3554 101 EFMLIAKTIGKNISSTYAKLEKLTLLAKRKSL-FNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGK 166 (672)
Q Consensus 101 EF~~~AeeI~kdIs~ts~KLeKLaqLaKRksL-FDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k 166 (672)
+-...-..+..-+..++..|..+..+++++.- +...=.+=-++...+|.|+..+.++|+.|+....
T Consensus 15 ~~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~ 81 (88)
T PF10241_consen 15 EILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677778888888888887777432 1111133345667899999999999999987554
No 72
>PRK04325 hypothetical protein; Provisional
Probab=24.18 E-value=4.8e+02 Score=22.73 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy3554 310 MQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVES 354 (672)
Q Consensus 310 IqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~ 354 (672)
|..+|.-+.-.-..-.+|...|.+|.-.|++....+......+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777888999999998888877766665543
No 73
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=23.56 E-value=3.4e+02 Score=21.90 Aligned_cols=55 Identities=20% Similarity=0.393 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3554 101 EFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVG 165 (672)
Q Consensus 101 EF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~ 165 (672)
.|...+..++-.+.++...+ .+ .++.....+.....+...+..++++|+.|+...
T Consensus 5 ~~I~~~r~lGfsL~eI~~~l-~l---------~~~~~~~~~~~~~~l~~~~~~i~~~i~~L~~~~ 59 (65)
T PF09278_consen 5 QFIRRLRELGFSLEEIRELL-EL---------YDQGDPPCADRRALLEEKLEEIEEQIAELQALR 59 (65)
T ss_dssp HHHHHHHHTT--HHHHHHHH-HH---------CCSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH-hc---------cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888887776 32 333335566666788888999999999988653
No 74
>KOG3850|consensus
Probab=23.47 E-value=1.2e+03 Score=26.96 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHhh--hhhhcc
Q psy3554 299 SEQFIQSRADTMQN--IESTIVELGGIFQQLAHMVQ----EQEEMVERIDANILDTELHVESAHRDQN--ICISTK 366 (672)
Q Consensus 299 qd~yIQqR~eeIqn--IESTI~ELgqIFqQLAtMV~----EQGEMIDRID~NVEdA~~~Ve~a~~eL~--~A~~~~ 366 (672)
.+.|=.+|-+|..+ .|-.-.|+..+=++||.|=+ +--|--..|.+++|.-...+.+-.-++. ..+..|
T Consensus 303 EERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq~qqv~Q~e 378 (455)
T KOG3850|consen 303 EERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQQQQVVQLE 378 (455)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788777654 56667788888888888853 4456677899999998888877655555 444443
No 75
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=22.61 E-value=7.6e+02 Score=25.37 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=13.9
Q ss_pred ccccccccc-cccccee-eeccCCC--CC--Cccchhhcccccch
Q psy3554 374 NTWISTKTQ-ACEDTVR-VTVPNKK--YK--SETYTEIDANILDT 412 (672)
Q Consensus 374 ~~~~~~~~~-~c~~~~~-~~~~~~~--~~--~~~~~~~~~~~~~~ 412 (672)
+.|-=..+. -|-.+|. .+.-|+. .. ..|..+-|.+|-+.
T Consensus 69 ~~wGC~~k~~iC~T~vpw~~~~N~s~~W~~~n~Tw~~W~~~i~~~ 113 (204)
T PF00517_consen 69 NIWGCSGKQHICHTPVPWNSWYNKSEIWNRLNMTWQQWEKEISNY 113 (204)
T ss_dssp SBSS-SSSS-S--B-----S---SS--HH--HHHHHHHHHHHHHH
T ss_pred HhcccCCCcceeCCCCccccCCCccccCchHHhhHHHHHHHhccc
Confidence 445434445 7877655 2223444 33 45555555444433
No 76
>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function. All known members of this group are proteins from drosophila and Caenorhabditis elegans.
Probab=22.01 E-value=16 Score=37.77 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=24.5
Q ss_pred ccccccceeeeEeecceecceeEEeCCC
Q psy3554 9 TNEAGFMNYDIIAYGSICHDIKVHDLPD 36 (672)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (672)
..++.|+|||+.+|||-..|+..|++++
T Consensus 237 ~~~~~liDfQ~~~~g~p~~Dl~~fl~~s 264 (294)
T PF02958_consen 237 PIDVVLIDFQLARYGSPAIDLAYFLYTS 264 (294)
T ss_pred cccceeeccccccCCCcHhHHHHHHHHC
Confidence 3478899999999999999999888765
No 77
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.13 E-value=2.3e+02 Score=25.78 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 100 GEFMLIAKTIGKNISSTYAKLEKLTLLAK 128 (672)
Q Consensus 100 sEF~~~AeeI~kdIs~ts~KLeKLaqLaK 128 (672)
.++-+.|..+...+..+.++-++|...-+
T Consensus 38 ~~~~~~~~~l~~~~~~l~~k~~~l~~~l~ 66 (99)
T PF10046_consen 38 KKMKDIAAGLEKNLEDLNQKYEELQPYLQ 66 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666665555555544333
No 78
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.80 E-value=4.6e+02 Score=25.03 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-ccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 108 TIGKNISSTYAKLEKLTLLAKR-KSLFNDKPTEIQELTYIIKEDLNSLNQQIA 159 (672)
Q Consensus 108 eI~kdIs~ts~KLeKLaqLaKR-ksLFDD~s~EIeELT~~IKqdI~sLn~qIk 159 (672)
.....+..+...++.|..-+.. --++++++.++++|-.+|...=.-+..+|.
T Consensus 65 ~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 65 ALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555554433333 235999999999998887443333333443
No 79
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.26 E-value=3e+02 Score=29.05 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3554 100 GEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSL-FNDKPTEIQELTYIIKEDLNSLNQQIAKLQQV 164 (672)
Q Consensus 100 sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksL-FDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~ 164 (672)
.+|.+...+|...+..+...=.-|+.+.+.... -.++..-.++ -..|.+||..++.-|++.+..
T Consensus 11 ~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~ee-LrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 11 LELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEE-LRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345555566665555555555555555554333 2333333333 347788888888888777653
Done!