Query psy3554
Match_columns 672
No_of_seqs 257 out of 1049
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 19:39:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhe_B Syntaxin1; exocytosis, 100.0 2.3E-30 7.9E-35 265.5 9.5 227 95-365 39-274 (279)
2 1dn1_B Syntaxin 1A, syntaxin b 99.9 7.4E-26 2.5E-30 231.8 13.4 228 95-365 26-257 (267)
3 1fio_A SSO1 protein; four heli 99.8 8.2E-19 2.8E-23 169.9 18.3 187 99-335 4-196 (196)
4 1jth_B Syntaxin 1A; coiled-coi 99.8 6.2E-19 2.1E-23 149.8 10.2 66 300-365 2-67 (77)
5 1n7s_B Syntaxin 1A; neuronal s 99.8 6.9E-19 2.4E-23 146.4 9.6 66 299-364 3-68 (68)
6 3hd7_B Syntaxin-1A; membrane p 99.8 2.2E-18 7.4E-23 155.6 13.6 69 297-365 10-78 (109)
7 1gl2_B Syntaxin 7; membrane pr 99.8 7.5E-19 2.6E-23 145.2 8.4 64 301-364 2-65 (65)
8 3b5n_B Protein SSO1; snare com 99.8 1.5E-18 5E-23 144.9 10.0 66 300-365 2-67 (69)
9 1sfc_B Protein (syntaxin 1A), 99.7 4E-18 1.4E-22 147.0 10.1 69 297-365 10-78 (83)
10 2nps_B Syntaxin 13, vesicle-as 99.7 4.2E-18 1.4E-22 142.8 8.8 62 304-365 2-63 (71)
11 3c98_B Syntaxin-1A; protein co 99.7 2.8E-18 9.6E-23 170.3 8.5 252 63-365 14-269 (279)
12 1ez3_A Syntaxin-1A; three heli 98.7 1.5E-07 5E-12 85.3 14.2 114 98-213 6-123 (127)
13 1s94_A S-syntaxin; three helix 98.7 4.3E-08 1.5E-12 94.4 8.4 144 63-215 8-156 (180)
14 2dnx_A Syntaxin-12; snare, HAB 97.4 0.0034 1.2E-07 58.0 15.0 105 97-208 7-114 (130)
15 2nps_D Syntaxin-6; vesicle fus 95.5 0.029 9.9E-07 47.9 6.8 62 304-365 15-76 (82)
16 1sfc_D Protein (SNAP-25B), pro 95.3 0.083 2.8E-06 45.6 9.1 61 304-364 25-85 (87)
17 1n7s_D SNAP-25A; neuronal snar 95.0 0.15 5.1E-06 41.6 9.3 56 307-362 9-64 (66)
18 1gl2_D Syntaxin 8, vesicle tra 94.9 0.084 2.9E-06 42.9 7.6 57 305-361 6-62 (65)
19 1nhl_A Synaptosomal-associated 94.4 0.17 5.7E-06 40.2 8.0 36 325-360 17-52 (54)
20 1n7s_C SNAP-25A; neuronal snar 93.9 0.5 1.7E-05 40.3 10.5 54 308-361 23-76 (79)
21 1l4a_D S-SNAP25 fusion protein 93.1 0.25 8.6E-06 42.8 7.5 59 305-363 27-85 (87)
22 1mqs_B SED5P, integral membran 92.5 0.028 9.4E-07 44.5 0.5 21 61-81 6-27 (50)
23 3b5n_D Protein transport prote 90.8 1.5 5.2E-05 35.9 9.1 54 308-361 10-63 (64)
24 1l4a_C S-SNAP25 fusion protein 90.6 0.89 3E-05 39.3 7.9 35 325-359 44-78 (83)
25 2xhe_B Syntaxin1; exocytosis, 89.3 20 0.00068 36.3 18.5 114 107-221 44-167 (279)
26 3b5n_C Protein transport prote 88.8 2 7E-05 35.9 8.5 32 330-361 34-65 (70)
27 3hd7_A Vesicle-associated memb 85.9 7.9 0.00027 33.5 10.9 43 308-350 5-47 (91)
28 2nps_B Syntaxin 13, vesicle-as 84.5 3.2 0.00011 34.2 7.4 33 404-436 38-70 (71)
29 1gl2_C VTI1B, vesicle transpor 80.2 9.7 0.00033 31.0 8.7 42 319-360 20-61 (65)
30 1sfc_B Protein (syntaxin 1A), 78.8 18 0.00062 30.5 10.3 30 405-434 54-83 (83)
31 4dnd_A Syntaxin-10, SYN10; str 78.3 11 0.00037 34.9 9.4 99 99-199 26-126 (130)
32 1dn1_B Syntaxin 1A, syntaxin b 78.2 2.3 8E-05 43.2 5.4 113 107-221 31-147 (267)
33 1hs7_A Syntaxin VAM3; UP-and-D 69.6 48 0.0017 29.3 10.9 84 109-213 8-92 (97)
34 2dnx_A Syntaxin-12; snare, HAB 67.1 37 0.0013 30.9 10.1 29 193-221 92-120 (130)
35 2c5k_T Syntaxin TLG1, T-snare 66.4 65 0.0022 28.1 11.0 86 100-202 6-92 (95)
36 1ez3_A Syntaxin-1A; three heli 58.8 26 0.00088 30.9 7.3 110 107-220 8-123 (127)
37 2nps_C Vesicle transport throu 53.2 96 0.0033 26.1 9.5 57 308-364 19-75 (81)
38 3hd7_B Syntaxin-1A; membrane p 48.5 1.4E+02 0.0049 26.3 14.1 84 304-444 10-93 (109)
39 3r84_A Mediator of RNA polymer 46.9 1.1E+02 0.0037 26.6 8.9 64 302-365 2-69 (86)
40 1m1j_B Fibrinogen beta chain; 45.5 2.5E+02 0.0084 31.1 13.7 27 101-127 90-116 (464)
41 3b5n_B Protein SSO1; snare com 44.1 1.3E+02 0.0043 24.4 10.3 30 310-339 5-34 (69)
42 1deq_A Fibrinogen (alpha chain 43.7 1.4E+02 0.0048 32.3 11.0 26 104-129 60-85 (390)
43 1n7s_B Syntaxin 1A; neuronal s 42.1 1.3E+02 0.0046 24.1 10.0 53 303-355 14-66 (68)
44 2k48_A Nucleoprotein; viral pr 36.3 91 0.0031 28.1 6.9 67 138-204 35-101 (107)
45 1s94_A S-syntaxin; three helix 33.7 55 0.0019 30.8 5.6 105 106-214 38-148 (180)
46 1qu7_A Methyl-accepting chemot 31.7 2.1E+02 0.0072 28.1 9.6 54 302-355 141-194 (227)
47 3ghg_A Fibrinogen alpha chain; 29.4 1.6E+02 0.0056 33.1 9.0 65 101-165 54-126 (562)
48 4gwp_A Mediator of RNA polymer 27.2 1.9E+02 0.0066 26.3 7.6 65 301-365 4-72 (115)
49 3c98_B Syntaxin-1A; protein co 27.0 19 0.00065 34.9 1.1 35 400-434 240-274 (279)
50 2ic6_A Nucleocapsid protein; h 26.8 1.7E+02 0.0059 25.0 6.8 66 138-203 5-70 (78)
51 1deq_A Fibrinogen (alpha chain 24.2 2.3E+02 0.0079 30.6 8.8 24 140-163 58-81 (390)
52 2kog_A Vesicle-associated memb 22.5 7.4 0.00025 35.5 -2.6 33 310-342 35-67 (119)
53 2ic9_A Nucleocapsid protein; h 21.7 2E+02 0.007 25.4 6.4 67 138-204 5-71 (96)
54 1m1j_A Fibrinogen alpha subuni 21.3 6.6E+02 0.023 27.9 11.7 65 100-164 54-126 (491)
55 1t3j_A Mitofusin 1; coiled coi 20.7 3E+02 0.01 24.3 7.4 29 138-166 43-71 (96)
No 1
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.96 E-value=2.3e-30 Score=265.46 Aligned_cols=227 Identities=17% Similarity=0.176 Sum_probs=153.6
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3554 95 FVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRK---SLFND---KPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQ 168 (672)
Q Consensus 95 ~~~~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRk---sLFDD---~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~ 168 (672)
....+++|++.+++|+.+|..+..++.+|.+||++. +.|+| ...+|++|+..|++.++.|+..|+.|+...+..
T Consensus 39 ~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~ 118 (279)
T 2xhe_B 39 PEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRA 118 (279)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999999999999999999999985 44666 358999999999999999999999999876543
Q ss_pred cccc-c-CCccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCc
Q psy3554 169 RDVI-S-SGHQH-LLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSV 245 (672)
Q Consensus 169 ~~~~-~-s~skq-e~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreqFs~~~~~~~lp~sas~~~~~~~S~ 245 (672)
...+ . ..+.. +..+++|++..|.++|++++..|+++|..|.+.+|.+..|. +... .+. ++ ..
T Consensus 119 ~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~--~~i~-~~~-----~~------~e- 183 (279)
T 2xhe_B 119 QQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQ--CRVV-EPS-----LS------DD- 183 (279)
T ss_dssp HHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS--CCSS-CCC-----CS------ST-
T ss_pred hhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHh-CCC-----CC------HH-
Confidence 2100 0 01111 34789999999999999999999999998887777543331 1111 000 00 00
Q ss_pred cchhhhhhcCCcchHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 246 LLADEQCAIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQ 325 (672)
Q Consensus 246 LldEe~esg~vaiD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL~e~~qd~yIQqR~eeIqnIESTI~ELgqIFq 325 (672)
-.++. ++. +.. ..|++ .+ ++.. ....++|++|+++|.+||++|.||++||+
T Consensus 184 e~~~~-------~e~------g~~------~~f~q----~~-----~~~~-~~~~~~i~eR~~eI~~Ie~~i~el~~if~ 234 (279)
T 2xhe_B 184 AIQKV-------IEH------GTE------GIFSG----MR-----LEGA-EAKLNEIRDRHKDIQQLERSLLELHEMFT 234 (279)
T ss_dssp THHHH-------HHH------C---------------------------------CTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------HhC------Cch------HHHHH----HH-----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00110 000 000 01211 01 1111 34567899999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 326 QLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 326 QLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
|||+||.+|||||||||+||+.|..+|++|..+|.+|.+.
T Consensus 235 dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~ 274 (279)
T 2xhe_B 235 DMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHY 274 (279)
T ss_dssp HHHTTTTTSCSSTTCHHHHHHTCCCCC-------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987
No 2
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.93 E-value=7.4e-26 Score=231.79 Aligned_cols=228 Identities=19% Similarity=0.204 Sum_probs=162.4
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy3554 95 FVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSL--FNDK--PTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRD 170 (672)
Q Consensus 95 ~~~~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksL--FDD~--s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~ 170 (672)
....+++|+..+++|..+|..+..++++|.++|++... ..|. ..+|+.++..|++.+..|...|+.|+........
T Consensus 26 ~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~ 105 (267)
T 1dn1_B 26 RDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG 105 (267)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34568999999999999999999999999999998432 3333 3899999999999999999999999886542110
Q ss_pred cccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCccchhh
Q psy3554 171 VISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADE 250 (672)
Q Consensus 171 ~~~s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreqFs~~~~~~~lp~sas~~~~~~~S~LldEe 250 (672)
...+..+...+.+++..|..+|++++..|+.++..|.+.+|.+-.|.-.+.. +.. ...-+++.
T Consensus 106 --~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~---~~~------------tdeeie~~ 168 (267)
T 1dn1_B 106 --LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITG---RTT------------TSEELEDM 168 (267)
T ss_dssp --TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CCC------------CHHHHHHH
T ss_pred --cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccC---CCC------------CHHHHHHH
Confidence 0111233467899999999999999999999999888888876666433322 100 00111111
Q ss_pred hhhcCCcchHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 251 QCAIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHM 330 (672)
Q Consensus 251 ~esg~vaiD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL~e~~qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtM 330 (672)
.++|+.. .|+++.+.+++ . .....+++++|+++|.+||++|.||++||+|||+|
T Consensus 169 ie~g~~~-------------------~f~q~~l~~~~------~-~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~l 222 (267)
T 1dn1_B 169 LESGNPA-------------------IFASGIIMDSS------I-SKQALSEIETRHSEIIKLENSIRELHDMFMDMAML 222 (267)
T ss_dssp HHTCSSC-------------------TTTTTCCCCSH------H-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HhCCcHH-------------------HHHHHHHHhhH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 12211110000 0 13467899999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 331 VQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 331 V~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
|.+|||||||||+||+.|..+|+.|+.+|.+|.+.
T Consensus 223 V~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~ 257 (267)
T 1dn1_B 223 VESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 257 (267)
T ss_dssp HHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.80 E-value=8.2e-19 Score=169.93 Aligned_cols=187 Identities=16% Similarity=0.191 Sum_probs=136.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CC--C---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy3554 99 YGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSL-FN--D---KPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVI 172 (672)
Q Consensus 99 ~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksL-FD--D---~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~ 172 (672)
+++|++.+++|..+|..++.++.+|.++|++... .+ | -..+|+.++..|++.++.|+..|+.|+....
T Consensus 4 ~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~------ 77 (196)
T 1fio_A 4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI------ 77 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 6899999999999999999999999999999432 22 2 1378999999999999999999999997531
Q ss_pred cCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCCccchhhhh
Q psy3554 173 SSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQC 252 (672)
Q Consensus 173 ~s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreqFs~~~~~~~lp~sas~~~~~~~S~LldEe~e 252 (672)
...+.++++..|..+|++++..|+.++..|.+.+|....|+-.... +. ..+++.+
T Consensus 78 ------~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~---~~----------------~~~~e~~ 132 (196)
T 1fio_A 78 ------HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQ---PE----------------ATEDEVE 132 (196)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TT----------------CCHHHHH
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CC----------------CCHHHHH
Confidence 1357899999999999999999999999998888887776643321 10 0111110
Q ss_pred hcCCcchHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 253 AIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQ 332 (672)
Q Consensus 253 sg~vaiD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL~e~~qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~ 332 (672)
. .++.++ ..+. |+++.+.++. .+.. ....++|++|+++|.+||++|.||++||+|||+||+
T Consensus 133 ~---~~~~~~------~~~~-----f~~~~~~~~~----~~~~-~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~ 193 (196)
T 1fio_A 133 A---AISDVG------GQQI-----FSQALLNANR----RGEA-KTALAEVQARHQELLKLEKSMAELTQLFNDMEELVI 193 (196)
T ss_dssp H---HTSHHH------HHHH-----HHHHTC----------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred H---HHHcCC------chhH-----HHHHHHhccc----hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011000 0011 1111111000 0111 456789999999999999999999999999999999
Q ss_pred hhh
Q psy3554 333 EQE 335 (672)
Q Consensus 333 EQG 335 (672)
+||
T Consensus 194 ~QG 196 (196)
T 1fio_A 194 EQQ 196 (196)
T ss_dssp CCC
T ss_pred hcC
Confidence 998
No 4
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.78 E-value=6.2e-19 Score=149.83 Aligned_cols=66 Identities=29% Similarity=0.400 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 300 EQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 300 d~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
.+++++|+++|.+||++|.||++||+|||+||.+|||||||||+||++|..+|++|+.+|.+|.+.
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 67 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999887777777777776
No 5
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.77 E-value=6.9e-19 Score=146.36 Aligned_cols=66 Identities=29% Similarity=0.415 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy3554 299 SEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIS 364 (672)
Q Consensus 299 qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~ 364 (672)
..+++++|+++|.+||++|.||++||+|||+||.+|||||||||+||+.|..+|++|+.+|++|.+
T Consensus 3 ~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~k 68 (68)
T 1n7s_B 3 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 68 (68)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999999999999999999999999999999999999999964
No 6
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.77 E-value=2.2e-18 Score=155.64 Aligned_cols=69 Identities=29% Similarity=0.403 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 297 DQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 297 ~~qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
++..+++++|+++|.+||++|.||++||+|||+||.+|||||||||+||++|..+|++|+++|++|.+.
T Consensus 10 ~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~y 78 (109)
T 3hd7_B 10 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999666666666666655
No 7
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.77 E-value=7.5e-19 Score=145.17 Aligned_cols=64 Identities=25% Similarity=0.567 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy3554 301 QFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIS 364 (672)
Q Consensus 301 ~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~ 364 (672)
+++++|+++|.+||++|.||++||+|||+||.+|||||||||+||+.|..+|++|..+|++|.+
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999999999999999999999999999999864
No 8
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.76 E-value=1.5e-18 Score=144.90 Aligned_cols=66 Identities=27% Similarity=0.453 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 300 EQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 300 d~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
.+++++|+++|.+||++|.||++||+|||+||.+|||||||||+||+.|..+|++|+.+|++|.+.
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 67 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKS 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367999999999999999999999999999999999999999999999999999999999999875
No 9
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.74 E-value=4e-18 Score=146.99 Aligned_cols=69 Identities=29% Similarity=0.403 Sum_probs=66.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 297 DQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 297 ~~qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
....+++++|+++|.+||++|.||++||+|||+||.+|||||||||+||+.|..+|++|..+|.+|.+.
T Consensus 10 ~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 10 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999999999999999999987
No 10
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.74 E-value=4.2e-18 Score=142.78 Aligned_cols=62 Identities=29% Similarity=0.532 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 304 QSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 304 QqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
++|+++|.+||++|.||++||+|||+||.+|||||||||+||++|..+|++|..+|.+|.+.
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 63 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999987
No 11
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.73 E-value=2.8e-18 Score=170.33 Aligned_cols=252 Identities=19% Similarity=0.197 Sum_probs=165.7
Q ss_pred chhHHHHHHHHHHhcccccccccccchhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCC---CHH
Q psy3554 63 RERTLEFNNVIRSLQGKNIVRAVAAKDVRRAQFVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSL-FND---KPT 138 (672)
Q Consensus 63 RDRT~EF~S~v~s~q~r~~~~~~s~~~~~~a~~~~~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksL-FDD---~s~ 138 (672)
||||.||++........... ........+++|+..+++|...|..+...+++|.+++++... .++ ...
T Consensus 14 kDr~~el~~~~~~~~~~~~~--------~~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~ 85 (279)
T 3c98_B 14 KDRTQELRTAKDSDDDDDVT--------VTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKE 85 (279)
T ss_dssp CCCCTTTC-------------------------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHH
T ss_pred HHHHHHHHHhhhcccccchh--------hhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 99999999877655422210 011234568999999999999999999999999999988432 222 247
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3554 139 EIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSR 218 (672)
Q Consensus 139 EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeR 218 (672)
++++++..|++....++..++.|+...+.....+ .......+..++...|..+++.+...|.+.+..+...++....|
T Consensus 86 ~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~--~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~ 163 (279)
T 3c98_B 86 ELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN--RSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR 163 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999987765433211 12234567889999999999999999999998887666654444
Q ss_pred hhhccCCCCCCCCCCCCCCCCCCCCCccchhhhhhcCCcchHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhhhhchh
Q psy3554 219 RDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQ 298 (672)
Q Consensus 219 reqFs~~~~~~~lp~sas~~~~~~~S~LldEe~esg~vaiD~~g~~q~~~t~pl~l~~~fSqs~lqQQQQQ~qlqL~e~~ 298 (672)
........... ........ .+.. .. +.. .+.+. .... ..
T Consensus 164 la~~~~~~~~~-------------~~~~~~~~--~~~~-------------~~------~~~-~~~~~-----~~~~-~~ 202 (279)
T 3c98_B 164 QLEITGRTTTS-------------EELEDMLE--SGNP-------------AI------FAS-GIIMD-----SSIS-KQ 202 (279)
T ss_dssp HHHHHTCCCCH-------------HHHHHHHH--SCCT-------------TS------STT-TSCSC-----SSST-TH
T ss_pred HHHhhccCccc-------------hHHHHHHH--hhhh-------------HH------HHH-HHHHH-----HHHH-HH
Confidence 33333211000 00000000 0000 00 000 00000 0111 44
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 299 SEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 299 qd~yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
...++++|+++|.+|+.+|.||++||.+||++|.|||+++++|++||+++..+|++|+.+|..|.+.
T Consensus 203 ~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~ 269 (279)
T 3c98_B 203 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 269 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999999887
No 12
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=98.74 E-value=1.5e-07 Score=85.30 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=91.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3554 98 NYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKS---LFNDK-PTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVIS 173 (672)
Q Consensus 98 ~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRks---LFDD~-s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~ 173 (672)
.+++|+..+++|..+|..+...+++|..+|.+.. -.++. ..+++.++..|+.....|...|+.|+.........
T Consensus 6 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~-- 83 (127)
T 1ez3_A 6 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL-- 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 4789999999999999999999999999999832 12221 27999999999999999999999999865432111
Q ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 174 SGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLK 213 (672)
Q Consensus 174 s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLK 213 (672)
..+......+.+++..|..+|++++..|+.++..|.+.+|
T Consensus 84 ~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k 123 (127)
T 1ez3_A 84 NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCK 123 (127)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122345788999999999999999999999976655554
No 13
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=98.66 E-value=4.3e-08 Score=94.40 Aligned_cols=144 Identities=12% Similarity=0.084 Sum_probs=90.4
Q ss_pred chhHHHHHHHHHHhcccccccccccchhhhhh-cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCCC---H
Q psy3554 63 RERTLEFNNVIRSLQGKNIVRAVAAKDVRRAQ-FVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRK-SLFNDK---P 137 (672)
Q Consensus 63 RDRT~EF~S~v~s~q~r~~~~~~s~~~~~~a~-~~~~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRk-sLFDD~---s 137 (672)
|||+.|+++....-.. ... +. .... ....+++|+..+++|..+|..+...+.+|.++|++. +.+++. .
T Consensus 8 kDRl~eL~~~~~~~~~-~~~--~~----~~~~~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k 80 (180)
T 1s94_A 8 KDRLAALKAAVSDEED-VEE--VA----VQVDSGGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMK 80 (180)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CH
T ss_pred hHHHHHHhccccCCCc-ccc--cc----ccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 9999999984321100 000 00 0011 234578899999999999999999999999999983 334432 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 138 TEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQA 215 (672)
Q Consensus 138 ~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaq 215 (672)
.+++.++..|+.....|...|+.|+.........+ .+......+.+++..|..+|.++...|+.++..|.+.+|..
T Consensus 81 ~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~--~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~ 156 (180)
T 1s94_A 81 EELEELMTDIKRTANKVRGKLKTIELNIEQEEHSN--KSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKAR 156 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998765432111 12233468899999999999999999999987665554443
No 14
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.0034 Score=57.98 Aligned_cols=105 Identities=13% Similarity=0.101 Sum_probs=77.7
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3554 97 QNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKP---TEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVIS 173 (672)
Q Consensus 97 ~~~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD~s---~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~ 173 (672)
..+++|...++.|+..|..|+..+..|.++.+.-+--.|.+ ..|..+...+.+.++.++..|++|....+...
T Consensus 7 ~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~---- 82 (130)
T 2dnx_A 7 GQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLS---- 82 (130)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSS----
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----
Confidence 35789999999999999999999999999998866655654 78999999999999999999999998642111
Q ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 174 SGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVR 208 (672)
Q Consensus 174 s~skqe~~HskNVV~sLqsKLq~LS~~FKdVLE~R 208 (672)
.......+....-|...++.+.+.|+.+|+..
T Consensus 83 ---~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~ 114 (130)
T 2dnx_A 83 ---TSEQRQQRLQKERLMNDFSAALNNFQAVQRRV 114 (130)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123344455555555555666666665443
No 15
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=95.50 E-value=0.029 Score=47.87 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 304 QSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 304 QqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
++-++.+..|..+|..|.+|-.+|..=|.+|.++||+||..|+.+...+..++..+..-.++
T Consensus 15 ~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 15 RMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457789999999999999999999999999999999999999999999999999887775
No 16
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=95.29 E-value=0.083 Score=45.63 Aligned_cols=61 Identities=10% Similarity=0.236 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy3554 304 QSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIS 364 (672)
Q Consensus 304 QqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~ 364 (672)
++=++.+..|..+|..|.+|-.+|..=|.+|.++||+|+..++.+...+..+++.+..-.+
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~ 85 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 4445778899999999999999999999999999999999999999999999988876543
No 17
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=94.99 E-value=0.15 Score=41.58 Aligned_cols=56 Identities=11% Similarity=0.242 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3554 307 ADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNIC 362 (672)
Q Consensus 307 ~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A 362 (672)
++.+..|.++|..|.+|=.+|+.=|.+|.++||+|+..++.+...+..+++.+..-
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999999999999999999999999998887653
No 18
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=94.90 E-value=0.084 Score=42.95 Aligned_cols=57 Identities=14% Similarity=0.278 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3554 305 SRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNI 361 (672)
Q Consensus 305 qR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~ 361 (672)
+=++.+..|..+|..|.+|=.+|..=|.+|.++||+|+..++.+...+..++..+..
T Consensus 6 eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 6 EQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678899999999999999999999999999999999999999999988887654
No 19
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=94.42 E-value=0.17 Score=40.16 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3554 325 QQLAHMVQEQEEMVERIDANILDTELHVESAHRDQN 360 (672)
Q Consensus 325 qQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~ 360 (672)
..-..++.+|||.|+||+.+++++..++..|.+.|.
T Consensus 17 ~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 17 IKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 344557789999999999999999999999998875
No 20
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=93.94 E-value=0.5 Score=40.27 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3554 308 DTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNI 361 (672)
Q Consensus 308 eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~ 361 (672)
+.+++.-+.+.|--++=.....++.+|||.|+||+.+++++..++..|.+.|..
T Consensus 23 ~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 23 ESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 455555555666666667788889999999999999999999999999988764
No 21
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=93.13 E-value=0.25 Score=42.76 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy3554 305 SRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICI 363 (672)
Q Consensus 305 qR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~ 363 (672)
+=++.+..|...|..|.+|=.+|..=|.+|.++||+|+..|+.+...+..+++.+++-.
T Consensus 27 eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll 85 (87)
T 1l4a_D 27 DMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLL 85 (87)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33577888999999999999999999999999999999999999999999998887643
No 22
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=92.53 E-value=0.028 Score=44.47 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.1
Q ss_pred cc-chhHHHHHHHHHHhccccc
Q psy3554 61 MP-RERTLEFNNVIRSLQGKNI 81 (672)
Q Consensus 61 Ms-RDRT~EF~S~v~s~q~r~~ 81 (672)
|+ +|||+||++++.+++++..
T Consensus 6 ~SiqDRT~EF~siv~~lqkr~~ 27 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVLSYKKRNK 27 (50)
T ss_dssp HHHHBCHHHHHHHHHHHHHHC-
T ss_pred ccccccCHHHHHHHHHHHhccc
Confidence 45 9999999999999998773
No 23
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=90.81 E-value=1.5 Score=35.92 Aligned_cols=54 Identities=9% Similarity=0.137 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3554 308 DTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNI 361 (672)
Q Consensus 308 eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~ 361 (672)
+.+..|.+.+.-|..|=..|..=|..|-++|+||+..++.+...+..+++-|..
T Consensus 10 ~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 10 RNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556777888888888889999999999999999999999999999998887753
No 24
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=90.64 E-value=0.89 Score=39.27 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy3554 325 QQLAHMVQEQEEMVERIDANILDTELHVESAHRDQ 359 (672)
Q Consensus 325 qQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL 359 (672)
..=+.|+.+|||.|+||+.|++++..+...|.+.|
T Consensus 44 ~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 44 IRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555778999999999999999998666555544
No 25
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=89.31 E-value=20 Score=36.26 Aligned_cols=114 Identities=12% Similarity=0.072 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----ccCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccc-
Q psy3554 107 KTIGKNISSTYAKLEKLTLLAKR----KSLFNDKP--TEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHL- 179 (672)
Q Consensus 107 eeI~kdIs~ts~KLeKLaqLaKR----ksLFDD~s--~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe- 179 (672)
.+.-..+..+...|.++...-.+ ..-.-..+ .+-.++...|......+.+.+..+....+.-...... ....
T Consensus 44 ~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~-~~~~~ 122 (279)
T 2xhe_B 44 ADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKR-AQQEG 122 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcc
Confidence 34556666666677666655554 23342322 3333566666666666766666666655443210000 0000
Q ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3554 180 ---LSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQ 221 (672)
Q Consensus 180 ---~~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreq 221 (672)
...........++....++..|++++..|....+..+++.+.
T Consensus 123 ~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~ 167 (279)
T 2xhe_B 123 TFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGE 167 (279)
T ss_dssp CCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000110336677888999999999998887766666555543
No 26
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=88.76 E-value=2 Score=35.87 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=28.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3554 330 MVQEQEEMVERIDANILDTELHVESAHRDQNI 361 (672)
Q Consensus 330 MV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~ 361 (672)
|+.+|||.|+|||.|++++..+...|.+.|..
T Consensus 34 ~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~ 65 (70)
T 3b5n_C 34 MLGHQSEQLNNVEGNLDLMKVQNKVADEKVAE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66799999999999999999999888887764
No 27
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=85.86 E-value=7.9 Score=33.52 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy3554 308 DTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTEL 350 (672)
Q Consensus 308 eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~ 350 (672)
+.+.++...+.|+.++..+=-.-|-|-||-|+.++.-.++-..
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 4577788888888888888888888999999888887766555
No 28
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=84.50 E-value=3.2 Score=34.18 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=23.8
Q ss_pred hhcccccchhhhHHHHHHHHHHHHhhhccchHH
Q psy3554 404 EIDANILDTELHVESAHREILKYFQSVTSNRWL 436 (672)
Q Consensus 404 ~~~~~~~~~~~nv~~a~~ellky~~~vssnR~L 436 (672)
.||.|+-++..||+.|..||.|+...-+++|..
T Consensus 38 ~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~ 70 (71)
T 2nps_B 38 SIEANVESSEVHVERASDQLQRAAYYQKKSRKK 70 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 345566666678888888888888888887754
No 29
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=80.15 E-value=9.7 Score=31.00 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3554 319 ELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQN 360 (672)
Q Consensus 319 ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~ 360 (672)
|--+|=.+....+..|+|.|.|...++.++..++.++.+-|+
T Consensus 20 ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 20 ETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 333344455557789999999999999999999999998775
No 30
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=78.82 E-value=18 Score=30.54 Aligned_cols=30 Identities=23% Similarity=0.154 Sum_probs=15.6
Q ss_pred hcccccchhhhHHHHHHHHHHHHhhhccch
Q psy3554 405 IDANILDTELHVESAHREILKYFQSVTSNR 434 (672)
Q Consensus 405 ~~~~~~~~~~nv~~a~~ellky~~~vssnR 434 (672)
||.|+-++..||+.|+.||.|+...-+++|
T Consensus 54 Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 54 IEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 333444444566666666666666665554
No 31
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=78.34 E-value=11 Score=34.88 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--ccCCc
Q psy3554 99 YGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDV--ISSGH 176 (672)
Q Consensus 99 ~sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRksLFDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~--~~s~s 176 (672)
..-|+...++|.+.|..+.....+-..+.+..+. ....|+..++.+++..+..++.+|.+|+..+.--... ...-+
T Consensus 26 ~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~--~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~ 103 (130)
T 4dnd_A 26 EDPFFVVRGEVQKAVNTARGLYQRWCELLQESAA--VGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLP 103 (130)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCC
Confidence 4569999999999998888887765443332221 1236888899999999999999999998766421110 00011
Q ss_pred ccccchHHHHHHHHHHHHHHHHH
Q psy3554 177 QHLLSHSSSVVLALQSKLASMST 199 (672)
Q Consensus 177 kqe~~HskNVV~sLqsKLq~LS~ 199 (672)
..+..-++..+..++.++.++-.
T Consensus 104 ~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 104 AGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334455556666666555543
No 32
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=78.20 E-value=2.3 Score=43.21 Aligned_cols=113 Identities=12% Similarity=0.143 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccch
Q psy3554 107 KTIGKNISSTYAKLEKLTLLAKR----KSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSH 182 (672)
Q Consensus 107 eeI~kdIs~ts~KLeKLaqLaKR----ksLFDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~H 182 (672)
.+.-..+..+...|.+|....++ +..+-..+..-+++...|......+.+....+....+.-.... ........
T Consensus 31 ~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~--~~~~~~~~ 108 (267)
T 1dn1_B 31 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSI--EQEEGLNR 108 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccccCC
Confidence 45667777778888887766655 2223343322223433443333333333333333222221100 00000012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3554 183 SSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQ 221 (672)
Q Consensus 183 skNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRreq 221 (672)
+....+.-++....++..|++++..|.......++|.+.
T Consensus 109 ~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~ 147 (267)
T 1dn1_B 109 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 147 (267)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223446678889999999999999988877777776654
No 33
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=69.62 E-value=48 Score=29.27 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcccccccCCcccccchHHHHH
Q psy3554 109 IGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIK-EDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVV 187 (672)
Q Consensus 109 I~kdIs~ts~KLeKLaqLaKRksLFDD~s~EIeELT~~IK-qdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskNVV 187 (672)
....|..+...|+.|.++.++-+.=.|.. +|-..|. +.+..|+..-++++.+..- . -.
T Consensus 8 ~~~li~t~s~niq~l~k~~~qlGTkrD~~----~LR~~l~~~l~~~~~~L~k~~~~l~~l---------~--------qk 66 (97)
T 1hs7_A 8 LSNLIETFAEQSRVLEKECTKIGSKRDSK----ELRYKIETELIPNCTSVRDKIESNILI---------H--------QN 66 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCCH----HHHHHHHHTHHHHHHHHHHHHHHSTHH---------H--------HC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchH----HHHHHHHHHHHHHHHHHHHHHHHhccc---------c--------hh
Confidence 34445555555557777777755545543 2333333 3344444444444321100 0 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 188 LALQSKLASMSTEFKNVLEVRTENLK 213 (672)
Q Consensus 188 ~sLqsKLq~LS~~FKdVLE~RTenLK 213 (672)
.-|.+.+..+...|+.++..|.+..+
T Consensus 67 eRL~~dF~~l~~~fQ~~qr~y~ek~~ 92 (97)
T 1hs7_A 67 GKLSADFKNLKTKYQSLQQSYNQRKS 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677888888889888877655443
No 34
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.11 E-value=37 Score=30.95 Aligned_cols=29 Identities=7% Similarity=0.189 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3554 193 KLASMSTEFKNVLEVRTENLKQAKSRRDQ 221 (672)
Q Consensus 193 KLq~LS~~FKdVLE~RTenLKaqkeRreq 221 (672)
....|+.+|+.+++.+....+...++...
T Consensus 92 q~~KL~~dF~~~L~~FQ~~Qr~~aekek~ 120 (130)
T 2dnx_A 92 QKERLMNDFSAALNNFQAVQRRVSEKEKE 120 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56689999999999988877776666543
No 35
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=66.39 E-value=65 Score=28.12 Aligned_cols=86 Identities=15% Similarity=0.264 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccc
Q psy3554 100 GEFMLIAKTIGKNISSTYAKLEKLTLLAKRKS-LFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQH 178 (672)
Q Consensus 100 sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRks-LFDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skq 178 (672)
.-|....+++...|..+...+.+ +.+ .......|+++.-..|..++..|.+.|.-++.. ...
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~------~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~-----------~~~ 68 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITR------HNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD-----------ENE 68 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH------TCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----------TTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH------ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CHH
Confidence 45888888888888877776544 211 112334677777777777777777777776643 123
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Q psy3554 179 LLSHSSSVVLALQSKLASMSTEFK 202 (672)
Q Consensus 179 e~~HskNVV~sLqsKLq~LS~~FK 202 (672)
+...++..|..|+.++..+...|.
T Consensus 69 EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 69 DVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466789999999999988887764
No 36
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=58.84 E-value=26 Score=30.91 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc-C---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccCCccc-cc
Q psy3554 107 KTIGKNISSTYAKLEKLTLLAKRKS-L---FNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDV-ISSGHQH-LL 180 (672)
Q Consensus 107 eeI~kdIs~ts~KLeKLaqLaKRks-L---FDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~-~~s~skq-e~ 180 (672)
...-..+..+...|.+|..+.++-. + +=..+..- ..+++.+..+...|..+....+..-+. ....... ..
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~----~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~ 83 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPD----EKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4566788888889998888777622 1 11111111 234555555555555544443321100 0000000 00
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3554 181 SHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRD 220 (672)
Q Consensus 181 ~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKaqkeRre 220 (672)
...+...+.-++....++..|++++..|......++++.+
T Consensus 84 ~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k 123 (127)
T 1ez3_A 84 NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCK 123 (127)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223445777899999999999999998887777776654
No 37
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=53.21 E-value=96 Score=26.13 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy3554 308 DTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIS 364 (672)
Q Consensus 308 eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~ 364 (672)
+.+..-...+.|=-+|=.+...=+..|.|.|.|....+.++..++.++.+-|+.=-.
T Consensus 19 ~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~r 75 (81)
T 2nps_C 19 RRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLR 75 (81)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 445555555555555556666677899999999999999999999999988875443
No 38
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=48.54 E-value=1.4e+02 Score=26.26 Aligned_cols=84 Identities=20% Similarity=0.176 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCccccccccccc
Q psy3554 304 QSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICISTKTQAHGDQNTWISTKTQA 383 (672)
Q Consensus 304 QqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~~~~~~~~~~~~~~~~~~~ 383 (672)
++--.+|++=+..|.+|.+=-.+|+.|..+=+.||..=.+.++....
T Consensus 10 ~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~--------------------------------- 56 (109)
T 3hd7_B 10 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEY--------------------------------- 56 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---------------------------------
Confidence 34446777777777777777778888877777777655555554444
Q ss_pred cccceeeeccCCCCCCccchhhcccccchhhhHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q psy3554 384 CEDTVRVTVPNKKYKSETYTEIDANILDTELHVESAHREILKYFQSVTSNRWLMIKIFAVL 444 (672)
Q Consensus 384 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~a~~ellky~~~vssnR~L~~Kif~vl 444 (672)
|+-++..||+.|..||.|.-+.-+++|..++-+++++
T Consensus 57 ------------------------nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~ 93 (109)
T 3hd7_B 57 ------------------------NVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICC 93 (109)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHH
Confidence 5555666999999999888555556555444344333
No 39
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=46.88 E-value=1.1e+02 Score=26.56 Aligned_cols=64 Identities=11% Similarity=0.241 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 302 FIQSRADTMQNIESTIVEL----GGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 302 yIQqR~eeIqnIESTI~EL----gqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
|||+|-+++..|...|..| +++|+-|.+.-..=..+-...+.++.+--...+.....|+.-++.
T Consensus 2 ~iqERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk~ 69 (86)
T 3r84_A 2 YIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQL 69 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999998888777654 566666666543223455667777777777777777777766554
No 40
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=45.49 E-value=2.5e+02 Score=31.10 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 101 EFMLIAKTIGKNISSTYAKLEKLTLLA 127 (672)
Q Consensus 101 EF~~~AeeI~kdIs~ts~KLeKLaqLa 127 (672)
-+.+.-+.|.++|..+..+|++|++..
T Consensus 90 ~L~k~q~~V~~~LqeLe~~l~~lsn~T 116 (464)
T 1m1j_B 90 TLLKQEKTVKPVLRDLKDRVAKFSDTS 116 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHhHHHHHHHHHHHHhhhh
Confidence 344555668999999999998886543
No 41
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=44.11 E-value=1.3e+02 Score=24.39 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy3554 310 MQNIESTIVELGGIFQQLAHMVQEQEEMVE 339 (672)
Q Consensus 310 IqnIESTI~ELgqIFqQLAtMV~EQGEMID 339 (672)
|+.=+..|.+|..=-.+|+.|..+=..||.
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~ 34 (69)
T 3b5n_B 5 VQARHQELLKLEKSMAELTQLFNDMEELVI 34 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555544444443
No 42
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.70 E-value=1.4e+02 Score=32.33 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 104 LIAKTIGKNISSTYAKLEKLTLLAKR 129 (672)
Q Consensus 104 ~~AeeI~kdIs~ts~KLeKLaqLaKR 129 (672)
+.-..+...|.+++..|..+.+.++.
T Consensus 60 k~er~~~~rIe~L~~~L~~~s~s~~~ 85 (390)
T 1deq_A 60 EVDQDFTSRINKLRDSLFNYQKNSKD 85 (390)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 33466777777777777777665543
No 43
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=42.07 E-value=1.3e+02 Score=24.11 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy3554 303 IQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESA 355 (672)
Q Consensus 303 IQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a 355 (672)
+++=++.|..|-.-..+|+.|..+=+.||..=..-|+.-..||+.+..++.+|
T Consensus 14 i~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 14 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444
No 44
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=36.31 E-value=91 Score=28.07 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 138 TEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNV 204 (672)
Q Consensus 138 ~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskNVV~sLqsKLq~LS~~FKdV 204 (672)
..|++|-.+|++.=.+|-...++|+...+.-..+....+++...-+..+|.+|+.|+..+-...-+.
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888877777766666666544332211111234555678889999999988765544433
No 45
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=33.65 E-value=55 Score=30.83 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccCCccccc
Q psy3554 106 AKTIGKNISSTYAKLEKLTLLAKR----KSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDV-ISSGHQHLL 180 (672)
Q Consensus 106 AeeI~kdIs~ts~KLeKLaqLaKR----ksLFDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~-~~s~skqe~ 180 (672)
....-..+..+...|.+|..+..+ +.-+-..+..-+ .+++.+..+...|..+....+..-+. .........
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~----~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~ 113 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDD----QMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEH 113 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345677888888888888877766 111333223333 34444444444444444333221100 000000000
Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 181 -SHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQ 214 (672)
Q Consensus 181 -~HskNVV~sLqsKLq~LS~~FKdVLE~RTenLKa 214 (672)
.......+.-+++...++..|++++..|.+....
T Consensus 114 ~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~ 148 (180)
T 1s94_A 114 SNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQID 148 (180)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122334667789999999999999877554433
No 46
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=31.68 E-value=2.1e+02 Score=28.10 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy3554 302 FIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESA 355 (672)
Q Consensus 302 yIQqR~eeIqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a 355 (672)
.+.+=.+.+..|...+.++..++.+++..+.+|...++.|..++++...-++..
T Consensus 141 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~ 194 (227)
T 1qu7_A 141 LVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQN 194 (227)
T ss_dssp HHHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445678889999999999999999999999999999999888877644443
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.41 E-value=1.6e+02 Score=33.12 Aligned_cols=65 Identities=9% Similarity=0.035 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3554 101 EFMLIAKTIGKNISSTYAKLEKLTLLAKRK-----SL---FNDKPTEIQELTYIIKEDLNSLNQQIAKLQQVG 165 (672)
Q Consensus 101 EF~~~AeeI~kdIs~ts~KLeKLaqLaKRk-----sL---FDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~~ 165 (672)
...+.-..+..-|++++.++++|.+..+.. .+ .-.+..+..++-..+.+--..|+++|..|+..+
T Consensus 54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 345555677778888888888886555441 11 222223444444444444556777777776544
No 48
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=27.24 E-value=1.9e+02 Score=26.34 Aligned_cols=65 Identities=12% Similarity=0.226 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy3554 301 QFIQSRADTMQNIESTI----VELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRDQNICIST 365 (672)
Q Consensus 301 ~yIQqR~eeIqnIESTI----~ELgqIFqQLAtMV~EQGEMIDRID~NVEdA~~~Ve~a~~eL~~A~~~ 365 (672)
.|||+|-+.+..|-..| .+++++|.-++.+=.-...+=..+..|+-+.-...+.+...|++-++.
T Consensus 4 ~~VqERLdSL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK~ 72 (115)
T 4gwp_A 4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQL 72 (115)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899998887766554 556777777777655555666778888888888888888888877765
No 49
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=26.97 E-value=19 Score=34.89 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=14.6
Q ss_pred ccchhhcccccchhhhHHHHHHHHHHHHhhhccch
Q psy3554 400 ETYTEIDANILDTELHVESAHREILKYFQSVTSNR 434 (672)
Q Consensus 400 ~~~~~~~~~~~~~~~nv~~a~~ellky~~~vssnR 434 (672)
++..+|+.|+-.+..+|+.|..||.|.-+.-+++|
T Consensus 240 ~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~R 274 (279)
T 3c98_B 240 EMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 274 (279)
T ss_dssp SGGGCHHHHHHTCCCCCCCCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777777777777777766665
No 50
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=26.76 E-value=1.7e+02 Score=24.98 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHH
Q psy3554 138 TEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKN 203 (672)
Q Consensus 138 ~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskNVV~sLqsKLq~LS~~FKd 203 (672)
..|++|-.+|+..=..|-...++|+...+....+....+++...-+..+|..|+.||..+-...-+
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777766666666666654432211101122445567888999999998876554433
No 51
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.18 E-value=2.3e+02 Score=30.64 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 140 IQELTYIIKEDLNSLNQQIAKLQQ 163 (672)
Q Consensus 140 IeELT~~IKqdI~sLn~qIk~LQ~ 163 (672)
|++....++..|..|++.|..+++
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554
No 52
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=22.46 E-value=7.4 Score=35.45 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy3554 310 MQNIESTIVELGGIFQQLAHMVQEQEEMVERID 342 (672)
Q Consensus 310 IqnIESTI~ELgqIFqQLAtMV~EQGEMIDRID 342 (672)
+.++...+.|+.+|..+=-.-|.|-||-|+.++
T Consensus 35 l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~ 67 (119)
T 2kog_A 35 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELD 67 (119)
T ss_dssp HHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 344444455555554443344445555444443
No 53
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.69 E-value=2e+02 Score=25.43 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Q psy3554 138 TEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNV 204 (672)
Q Consensus 138 ~EIeELT~~IKqdI~sLn~qIk~LQ~~~k~~~~~~~s~skqe~~HskNVV~sLqsKLq~LS~~FKdV 204 (672)
..|++|-.+|+..=.+|-...++|+...+....+....+++...-+..+|..|+.||..+-...-+.
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~ 71 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777776666666666666544322111011224455678889999999988765544444
No 54
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.25 E-value=6.6e+02 Score=27.89 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----C---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3554 100 GEFMLIAKTIGKNISSTYAKLEKLTLLAKRKS-----L---FNDKPTEIQELTYIIKEDLNSLNQQIAKLQQV 164 (672)
Q Consensus 100 sEF~~~AeeI~kdIs~ts~KLeKLaqLaKRks-----L---FDD~s~EIeELT~~IKqdI~sLn~qIk~LQ~~ 164 (672)
....+.-..+..-|.+++..|.++.++++..- + ..++-.+++.....+.+-...|+++|.-|+.-
T Consensus 54 glL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~k 126 (491)
T 1m1j_A 54 GIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQR 126 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 34455566778888888888888776554410 0 11111344444444444455555555555543
No 55
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.72 E-value=3e+02 Score=24.26 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3554 138 TEIQELTYIIKEDLNSLNQQIAKLQQVGK 166 (672)
Q Consensus 138 ~EIeELT~~IKqdI~sLn~qIk~LQ~~~k 166 (672)
.++++.+.+.+..|..++++|..|+....
T Consensus 43 ~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 43 QQVDMTQKHLEEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777788888888888877543
Done!