RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3554
         (672 letters)



>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM
           PROT choanoflagellates; 2.80A {Monosiga brevicollis}
          Length = 279

 Score = 86.4 bits (213), Expect = 6e-19
 Identities = 33/267 (12%), Positives = 85/267 (31%), Gaps = 53/267 (19%)

Query: 101 EFMLIAKTIGKNISSTYAKLEKL-TLLAKRKSLFNDKPT-----EIQELTYIIKEDLNSL 154
           +F    K I  NI      +E++  L  +     + +       ++Q+    I    N +
Sbjct: 45  DFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKI 104

Query: 155 NQQIAKLQQVGKHQRDVISSGHQHLLSHS---SSVVLALQSKLASMSTEFKNVLEVRTEN 211
              + ++++  K  +   +     + +      S   +L  K   + T + +V       
Sbjct: 105 RADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRR 164

Query: 212 LKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSDTALQQQQQQKTMM 271
             +  +R+ +                                 D     ++   +     
Sbjct: 165 YGENVARQCRVVEPSLSD-------------------------DAIQKVIEHGTEG---- 195

Query: 272 LYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMV 331
                          + +       +     I+ R   +Q +E +++EL  +F  ++ +V
Sbjct: 196 ----------IFSGMRLEGA-----EAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLV 240

Query: 332 QEQEEMVERIDANILDTELHVESAHRD 358
             Q EM++RI+ ++  +  +V+ A   
Sbjct: 241 ASQGEMIDRIEFSVEQSHNYVKKATEQ 267


>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex,
           coiled coil, transmembrane; 1.9A {Mus musculus} SCOP:
           h.1.15.1
          Length = 65

 Score = 78.4 bits (194), Expect = 2e-18
 Identities = 16/55 (29%), Positives = 37/55 (67%)

Query: 303 IQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHR 357
           +  R  +++ +E+ I+++  IF+ L  M+ EQ ++++ I+AN+   E+HV+ A++
Sbjct: 4   MHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQ 58



 Score = 28.4 bits (64), Expect = 1.3
 Identities = 7/21 (33%), Positives = 16/21 (76%)

Query: 405 IDANILDTELHVESAHREILK 425
           I+AN+   E+HV+ A++++ +
Sbjct: 42  IEANVESAEVHVQQANQQLSR 62


>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex,
           multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1
           PDB: 3c98_B
          Length = 267

 Score = 84.8 bits (209), Expect = 2e-18
 Identities = 43/262 (16%), Positives = 86/262 (32%), Gaps = 47/262 (17%)

Query: 101 EFMLIAKTIGKNISSTYAKLEKL-TLLAKRKSLFNDKPT---EIQELTYIIKEDLNSLNQ 156
           EF    + I   I      +E++    +   +  N       E++EL   IK+  N +  
Sbjct: 32  EFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRS 91

Query: 157 QIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAK 216
           ++  ++Q  + +     +     L    +    L  K   + +E+        E  K   
Sbjct: 92  KLKSIEQSIEQEEG--LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 149

Query: 217 SRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSDTALQQQQQQKTMMLYEDQ 276
            R+ + +G    S      +                                        
Sbjct: 150 QRQLEITGRTTTSEELEDMLESG----------------------------------NPA 175

Query: 277 NMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEE 336
             +   +      K       Q+   I++R   +  +E++I EL  +F  +A +V+ Q E
Sbjct: 176 IFASGIIMDSSISK-------QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGE 228

Query: 337 MVERIDANILDTELHVESAHRD 358
           M++RI+ N+     +VE A  D
Sbjct: 229 MIDRIEYNVEHAVDYVERAVSD 250


>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25,
           SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A
           {Saccharomyces cerevisiae} SCOP: h.1.15.1
          Length = 69

 Score = 76.6 bits (189), Expect = 1e-17
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 303 IQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRD 358
           +Q+R   +  +E ++ EL  +F  +  +V EQ+E V+ ID N+ D +L VE     
Sbjct: 5   VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGH 60



 Score = 27.3 bits (61), Expect = 3.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 400 ETYTEIDANILDTELHVESAHREILKYFQS 429
           E    ID N+ D +L VE       K  +S
Sbjct: 38  ENVDVIDKNVEDAQLDVEQGVGHTDKAVKS 67


>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle,
           transport protein; 1.45A {Rattus norvegicus} SCOP:
           h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
          Length = 68

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 301 QFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRD 358
             I++R   +  +E++I EL  +F  +A +V+ Q EM++RI+ N+     +VE A  D
Sbjct: 5   SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 62


>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion,
           snare complex, early endosomal snare complex, VTI1A,
           VAMP4, transport protein; 2.50A {Rattus norvegicus}
          Length = 71

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 18/53 (33%), Positives = 35/53 (66%)

Query: 306 RADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRD 358
           R   +Q +E+ I+++  IF+ LA M+ +Q ++++ I+AN+  +E+HVE A   
Sbjct: 4   RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQ 56



 Score = 29.5 bits (67), Expect = 0.47
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 405 IDANILDTELHVESAHREILKYFQSVTSNRWLM 437
           I+AN+  +E+HVE A  ++ +       +R  M
Sbjct: 39  IEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71


>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion
           protein complex, transport protein; 2.40A {Rattus
           norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
          Length = 83

 Score = 67.1 bits (164), Expect = 4e-14
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 7/76 (9%)

Query: 283 LQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERID 342
           +      K       Q+   I++R   +  +E++I EL  +F  +A +V+ Q EM++RI+
Sbjct: 3   IMDSSISK-------QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIE 55

Query: 343 ANILDTELHVESAHRD 358
            N+     +VE A  D
Sbjct: 56  YNVEHAVDYVERAVSD 71


>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis
           complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB:
           1hvv_A* 1urq_B
          Length = 77

 Score = 66.2 bits (162), Expect = 7e-14
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 301 QFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHRD 358
             I++R   +  +E++I EL  +F  +A +V+ Q EM++RI+ N+     +VE A  D
Sbjct: 3   SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 60


>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell
           juncti cytoplasmic vesicle, membrane, phosphoprotein;
           HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
          Length = 109

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 282 ALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERI 341
                       L E      I++R   +  +E++I EL  +F  +A +V+ Q EM++RI
Sbjct: 1   GSHMDSSISKQALSE------IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRI 54

Query: 342 DANILDTELHVESAHRD 358
           + N+     +VE A  D
Sbjct: 55  EYNVEHAVDYVERAVSD 71



 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 10/51 (19%), Positives = 18/51 (35%)

Query: 405 IDANILDTELHVESAHREILKYFQSVTSNRWLMIKIFAVLIFFFIFFVVFL 455
           I+ N+     +VE A  +  K  +  +  R   I I    +   I     +
Sbjct: 54  IEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTI 104


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 70.7 bits (172), Expect = 9e-13
 Identities = 88/635 (13%), Positives = 179/635 (28%), Gaps = 172/635 (27%)

Query: 2   HRNACTQTNEAGFMNYDIIAY--GSICHDIKVHDLPDKKSKNYIGPHFSCSMTLKHHPNH 59
           H +   +T E  +   DI++    +   +    D+ D           S    + H    
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-----MPKSILS-KEEIDHIIMS 57

Query: 60  NMPRERTLEFNNVIRSLQGKNIVRAVAAKDVRRAQFV-----QNYGEFMLIAKTIGKNIS 114
                 TL     + S + + +V           +FV      NY   M   KT  +  S
Sbjct: 58  KDAVSGTLRLFWTLLS-KQEEMV----------QKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 115 STYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKLQQ----------- 163
                  +     +R  L+ND      +      +    L Q + +L+            
Sbjct: 107 MMTRMYIE-----QRDRLYNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 164 VGKH------QRDV------------ISSGHQH----LLSHSSSVVLALQSKLASMSTEF 201
            GK                       ++  + +    +L     ++  +     S S   
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 202 KNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQC---AIDMSD 258
            N +++R  +++    R                 +    ++  +L+        A +  +
Sbjct: 221 SN-IKLRIHSIQAELRR----------------LLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 259 TALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMM-----LYEDQSE----QFIQSRADT 309
                    K ++    + ++D          ++      L  D+ +    +++  R   
Sbjct: 264 L------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 310 ----MQNIE----STIVEL----GGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHR 357
               +        S I E        +    H+  ++   +     N+L+   + +   R
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 358 ----DQNICISTKTQAHGDQNTWISTKTQACEDTV----RVTVPNKKYKSETYTEIDANI 409
                 +  I T          W           V    + ++  K+ K  T + I +  
Sbjct: 378 LSVFPPSAHIPTILL----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIY 432

Query: 410 LDTELHVE---SAHREIL-KYFQSVTSNRWLMIKIFAVLIFFFIFFVVFLAHNCKNIE-- 463
           L+ ++ +E   + HR I+  Y    T +   +I  +    F+       + H+ KNIE  
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-----HIGHHLKNIEHP 487

Query: 464 ---SSTPPYFTCNKSFLSA--RCTGYEG--------LLLQLTAHYSK---------SRVY 501
              +     F  +  FL    R               L QL   Y            R+ 
Sbjct: 488 ERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLV 545

Query: 502 ASIGEGLPGVA--------------GLQCEVSTIF 522
            +I + LP +                L  E   IF
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580



 Score = 56.0 bits (134), Expect = 4e-08
 Identities = 100/693 (14%), Positives = 209/693 (30%), Gaps = 206/693 (29%)

Query: 55  HHPNHNMP---RERTLEFNNVIRSLQGKNIVRAVAAKDVR---RAQFVQNYGEFMLIAKT 108
           HH +H+M     E   ++ +++   +    V     KDV+   ++   +   + ++++K 
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFE-DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59

Query: 109 IGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTY-IIKEDLNSLNQQIAKLQQVGKH 167
               +S T       TLL+K++ +      E+  + Y  +   + +  +Q + + ++   
Sbjct: 60  ---AVSGTLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 168 QRDVISSGHQHLLSHSSS---VVLALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSG 224
           QRD + + +Q    ++ S     L L+  L  +    KNVL +                 
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KNVL-I--------------DGV 158

Query: 225 GGAPSSLPPAAMSGPHHQG-SVLLADEQCAIDMSDTALQQQQQQKTM------MLYEDQN 277
            G+               G + +  D               + Q  M      +  ++ N
Sbjct: 159 LGS---------------GKTWVALD----------VCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 278 MSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNI----ESTIVELGGIFQQLAHM--- 330
             +T L+  Q+     L   Q +    SR+D   NI     S   EL  + +   +    
Sbjct: 194 SPETVLEMLQK-----LLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 331 -----VQEQEEMVE------RI-----DANILD-----TELHVESAHRDQNICISTKTQA 369
                VQ   +         +I        + D     T  H+   H    +   T  + 
Sbjct: 248 LVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL---TPDEV 303

Query: 370 HGDQNTWISTKT-----QACE----------DTVRVTVPN-----KKYKSETYTE-IDA- 407
                 ++  +      +             +++R          K    +  T  I++ 
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG-LATWDNWKHVNCDKLTTIIESS 362

Query: 408 -NILDTELHVESAHREILKYFQSVT---SNRWLMIKIFAVL----IFFFIFFVVFLAHNC 459
            N+L+          E  K F  ++    +  +   + +++    I   +  VV   H  
Sbjct: 363 LNVLEPA--------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 460 KNIESSTPPY-FTCNKSFLSARCTGYEGLLL--QLTAHYSKSRVYASIGEGLPGVAGLQC 516
             +E        +    +L  +        L   +  HY+  + + S     P       
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP------- 467

Query: 517 EVSTIFIGLDFRAASRDYAFYVRQTLMKDIRCLLAHVISHWRGASRSPKSRDSSTLMKDI 576
                   LD       Y FY            + H   H +      +      +  D 
Sbjct: 468 -------YLD------QY-FY----------SHIGH---HLKNIEHPERMTLFRMVFLDF 500

Query: 577 RCLLAHVISQLVTPQWIFCTNTPRSWRQGKVPAL----RY--FIFLPTSPKKKSLIWHFM 630
           R L   +             +T  +     +  L     Y  +I     PK + L+   +
Sbjct: 501 RFLEQKIRH----------DSTAWNASGSILNTLQQLKFYKPYIC-DNDPKYERLVNAIL 549

Query: 631 HRKKPPTVYHYFL-RIKYRVVLGTGSCIVGIGL 662
                      FL +I+  ++    + ++ I L
Sbjct: 550 D----------FLPKIEENLICSKYTDLLRIAL 572



 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 29/166 (17%), Positives = 53/166 (31%), Gaps = 47/166 (28%)

Query: 1   MHRNACTQTNEAGFMNYDIIAYGSICHDIKVHDLPDKKSKNYIGPHFSCSMTLKHHPNHN 60
           +HR+            Y+I        D    DL       Y   H        HH  + 
Sbjct: 445 LHRSIVDH--------YNIPK----TFD--SDDLIPPYLDQYFYSHIG------HHLKNI 484

Query: 61  MPRERTLEFNNV---IRSLQGKNIVRAVAA------------KDVR--RAQFVQNYGEFM 103
              ER   F  V    R L+ K  +R  +             + ++  +     N  ++ 
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 104 LIAKTIGKN--------ISSTYAKLEKLTLLAKRKSLFNDKPTEIQ 141
            +   I           I S Y  L ++ L+A+ +++F +   ++Q
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588



 Score = 39.1 bits (90), Expect = 0.005
 Identities = 34/330 (10%), Positives = 93/330 (28%), Gaps = 106/330 (32%)

Query: 28  DIKVHDLPDKKSKNYIGPHFSCSM---TLKHHPNH--NMPRERTLEFNNVIRSLQGKNIV 82
           D +  DLP +       P    S+   +++       N       +   +I     ++ +
Sbjct: 312 DCRPQDLPREVLT--TNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTII-----ESSL 363

Query: 83  RAVAAKDVRRAQFVQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQE 142
             +   + R     + +    +   +   +I +         L      ++ D       
Sbjct: 364 NVLEPAEYR-----KMFDRLSVFPPSA--HIPTI-------LL----SLIWFDVIKSDVM 405

Query: 143 LTYIIKEDLNS--LNQQ-------IAKLQQVGKHQRDVISSGHQHLLSH---------SS 184
           +  ++ +      + +Q       I  +    K + +   + H+ ++ H           
Sbjct: 406 V--VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 185 SVVLAL-------------QSKLASMSTEFKNVLEVRTENLK--QAKSRRDQYSGGGAPS 229
            +   L               +     T F+ V      + +  + K R D  +   + S
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----LDFRFLEQKIRHDSTAWNASGS 519

Query: 230 SLPPAAMSGPHHQGSVLLAD---------------EQCAIDMSDTALQQQQQQKTMMLYE 274
            L               L                 E+    + D   + ++    ++  +
Sbjct: 520 ILN-------------TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN---LICSK 563

Query: 275 DQNMSDTALQQQQQQKTMMLYEDQSEQFIQ 304
             ++   AL  + +     ++E+  +Q +Q
Sbjct: 564 YTDLLRIALMAEDEA----IFEEAHKQ-VQ 588


>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein;
           2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
          Length = 196

 Score = 59.7 bits (144), Expect = 2e-10
 Identities = 31/240 (12%), Positives = 78/240 (32%), Gaps = 44/240 (18%)

Query: 96  VQNYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLN 155
           + ++  FM     I +++      + ++  L  ++ L      +       ++  L++  
Sbjct: 1   MHDFVGFMNKISQINRDLDKYDHTINQVDSL-HKRLLTEVNEEQASH----LRHSLDNFV 55

Query: 156 QQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQA 215
            Q   LQ   K++         H  ++  +     + +   +  +++ V     E  K+ 
Sbjct: 56  AQATDLQFKLKNEIKSAQRDGIHD-TNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQ 114

Query: 216 KSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSDTALQQQQQQKTMMLYED 275
             R+       A                     +++    +SD   QQ   Q        
Sbjct: 115 AKRQYMIIQPEAT--------------------EDEVEAAISDVGGQQIFSQA------- 147

Query: 276 QNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQE 335
                  L   ++ +      +     +Q+R   +  +E ++ EL  +F  +  +V EQ+
Sbjct: 148 ------LLNANRRGEAKTALAE-----VQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196



 Score = 30.8 bits (69), Expect = 0.99
 Identities = 18/205 (8%), Positives = 63/205 (30%), Gaps = 36/205 (17%)

Query: 147 IKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLE 206
           I  DL+  +  I ++       + +++  ++   SH    +    ++   +  + KN ++
Sbjct: 14  INRDLDKYDHTINQVD---SLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIK 70

Query: 207 VRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSDTALQQQQQ 266
               +     +++ Q                                +      +    +
Sbjct: 71  SAQRDGIHDTNKQAQAEN----------------------SRQRFLKLIQDYRIVDSNYK 108

Query: 267 QKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQ 326
           ++     + Q M       + + +  +      + F Q+  +  +  E+         + 
Sbjct: 109 EENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEA---------KT 159

Query: 327 LAHMVQEQEEMVERIDANILDTELH 351
               VQ + + + +++ ++   EL 
Sbjct: 160 ALAEVQARHQELLKLEKSMA--ELT 182


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 61.6 bits (149), Expect = 7e-10
 Identities = 77/449 (17%), Positives = 126/449 (28%), Gaps = 153/449 (34%)

Query: 295 YEDQSEQFIQSRADTMQNIE-----STIVELGGIFQQLAHMVQEQEEMVERIDANILDTE 349
                EQF +   +  +        +T  EL G F  L ++    E         +L+  
Sbjct: 30  ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF--LGYVSSLVEPSKVGQFDQVLNLC 87

Query: 350 L-HVESAH-RDQNICISTKTQAHGDQNTWISTKTQACEDTVRVTVPNKKYKSETYTEIDA 407
           L   E+ +    +I        H                    T+   K   + Y    A
Sbjct: 88  LTEFENCYLEGNDI--------H--------ALAAKLLQENDTTLVKTKELIKNYIT--A 129

Query: 408 NILDTELHVESAHREILKYFQSVTSNRWLMIKIFAVLIF--------FF-----IF---- 450
            I+  +   +      L  F++V        ++ A  IF        +F     ++    
Sbjct: 130 RIM-AKRPFDKKSNSAL--FRAVGEGN---AQLVA--IFGGQGNTDDYFEELRDLYQTYH 181

Query: 451 -----FVVFLAHNCKNI---ESSTPPYFT--CN-KSFL----SARCTGYEGL-------- 487
                 + F A     +          FT   N   +L    +     Y  L        
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY--LLSIPISCP 239

Query: 488 ---LLQLTAHYSKSRVYASIGEGLPG------------VAGLQCEVSTIFIGL-----DF 527
              ++QL AHY    V A +    PG              GL   V+ + I        F
Sbjct: 240 LIGVIQL-AHY---VVTAKLLGFTPGELRSYLKGATGHSQGL---VTAVAIAETDSWESF 292

Query: 528 RAASRD---YAFYVRQTLMKDIRCLLAHVISHWRGASRSPKSRDSS--------TLMKDI 576
             + R      F++       +RC  A     +   S  P   + S        + M  I
Sbjct: 293 FVSVRKAITVLFFI------GVRCYEA-----YPNTSLPPSILEDSLENNEGVPSPMLSI 341

Query: 577 R-----CLLAHV--------------ISQLV-TPQWIFCTNTPRSWRQGKVPALRYFIFL 616
                  +  +V              IS LV   + +  +  P+S   G    LR     
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLY-GLNLTLRK-AKA 398

Query: 617 PTSPKKKSLIWHFMHRKKPPTVYHYFLRI 645
           P+    +S I  F  RK      + FL +
Sbjct: 399 PSG-LDQSRI-PFSERK--LKFSNRFLPV 423



 Score = 51.6 bits (123), Expect = 8e-07
 Identities = 63/386 (16%), Positives = 124/386 (32%), Gaps = 137/386 (35%)

Query: 19  IIAYGSICHDIKV----------------HDLPDKKSKNYIG---P--------HFSCSM 51
            +++GS+ H + V                  LP+  ++ +     P         F    
Sbjct: 10  TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPE-PTEGFAADDEPTTPAELVGKF---- 64

Query: 52  TLKH-----HPNHNMPRERTL-----EFNNVIRSLQGKNIVRAVAA--------KDVRRA 93
            L +      P+     ++ L     EF N    L+G +I  A+AA          V+  
Sbjct: 65  -LGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LEGNDI-HALAAKLLQENDTTLVKTK 120

Query: 94  QFVQNYGE-FMLIAKTIGKNISS---TYAKLEKLTLLAKRKSLF-----NDKP-TEIQEL 143
           + ++NY    ++  +   K  +S            L+A    +F      D    E+++L
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA----IFGGQGNTDDYFEELRDL 176

Query: 144 --TY------IIK---EDLNSLNQQIAKLQQVGKHQRDVIS--------SGHQHLLSHSS 184
             TY      +IK   E L+ L +     ++V     +++             +LLS   
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236

Query: 185 SVVL--ALQSKLASMSTEFKNVLEVRTENLKQAKSRRDQYSGGGAPSSLPPAAMSGPHHQ 242
           S  L   +Q  LA        +L      L      R    G            +G  H 
Sbjct: 237 SCPLIGVIQ--LAHYVV-TAKLLGFTPGEL------RSYLKG-----------ATG--HS 274

Query: 243 GSVLLADEQCAIDMSDT----------ALQ---------QQQQQKTMMLYEDQNMSDTAL 283
             ++ A    AI  +D+          A+           +    T +     ++ + +L
Sbjct: 275 QGLVTA---VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL---PPSILEDSL 328

Query: 284 QQQQQQKTMMLY-EDQSEQFIQSRAD 308
           +  +   + ML   + +++ +Q   +
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVN 354



 Score = 31.6 bits (71), Expect = 1.3
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 51/149 (34%)

Query: 67   LEFNNVIRSLQ--GKNIVRAVAAKDVRRAQFVQNYGEFMLIAKTIGK-NISSTYAKLEKL 123
            +   +++  +   G  +  AV   ++ R+    NYG   +IA   G+   S +   L+ +
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRS----NYG---MIAINPGRVAASFSQEALQYV 1829

Query: 124  T-LLAKRKSLF----NDKPTEIQELTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQH 178
               + KR        N                 N  NQQ             V  +G   
Sbjct: 1830 VERVGKRTGWLVEIVNY----------------NVENQQY------------VA-AGDLR 1860

Query: 179  LLSHSSSVV--LALQS----KLA-SMSTE 200
             L   ++V+  + LQ     +L  S+S E
Sbjct: 1861 ALDTVTNVLNFIKLQKIDIIELQKSLSLE 1889


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 32.4 bits (73), Expect = 0.27
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 16/79 (20%)

Query: 332 QEQEEMVERIDANILDTELHVESAHRDQNICISTKTQAHGDQNTWISTKTQACEDTVRVT 391
           +EQ + ++ +DA               +      + +A  D   W     +  E   +  
Sbjct: 92  EEQRKRLQELDAA--------SKVMEQE-----WREKAKKDLEEW---NQRQSEQVEKNK 135

Query: 392 VPNKKYKSETYTEIDANIL 410
           + N+      Y + DA+I+
Sbjct: 136 INNRIADKAFYQQPDADII 154


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.8 bits (71), Expect = 0.34
 Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 4/29 (13%)

Query: 210 ENLKQAKSRRDQYSGGGAPSSLPPAAMSG 238
           + LK+ ++    Y+      S P  A+  
Sbjct: 20  QALKKLQASLKLYA----DDSAPALAIKA 44



 Score = 31.5 bits (70), Expect = 0.48
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 11/37 (29%)

Query: 284 QQQQQQK---TMMLYEDQSEQFIQSRADTMQNIESTI 317
           ++Q  +K   ++ LY D S       A  +  I++T+
Sbjct: 18  EKQALKKLQASLKLYADDS-------APALA-IKATM 46



 Score = 29.5 bits (65), Expect = 1.9
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 15/42 (35%)

Query: 156 QQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASM 197
           Q + KLQ          +S    L +  S+  LA++   A+M
Sbjct: 20  QALKKLQ----------AS--LKLYADDSAPALAIK---ATM 46


>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase;
           2.80A {Homo sapiens}
          Length = 425

 Score = 32.9 bits (75), Expect = 0.35
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 11/118 (9%)

Query: 240 HHQGSVLLADEQCAIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQS 299
                ++LAD    ID +D+        ++    +        +  +  Q     +E  +
Sbjct: 198 VTTKEIVLADV---ID-NDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQMVKKNFEWVA 253

Query: 300 EQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTELHVESAHR 357
           E+         Q     ++   G    L H     E++ +      +  EL V SAH+
Sbjct: 254 ERVELLLKSESQCRVVVLM---GSTSDLGHC----EKIKKACGNFGIPCELRVTSAHK 304


>3ibp_A Chromosome partition protein MUKB; structural maintenance of
           chromosomes, SMC, condensin, chromosome segregation,
           hinge, dimerization domain; 3.10A {Escherichia coli}
          Length = 302

 Score = 30.9 bits (69), Expect = 1.3
 Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 3/102 (2%)

Query: 243 GSVLLADEQCAIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQF 302
           GS ++A    ++  +       +Q++  +    Q++   A      Q ++    +Q  + 
Sbjct: 1   GSHMIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEE 60

Query: 303 IQSRAD---TMQNIESTIVELGGIFQQLAHMVQEQEEMVERI 341
             S  D    +Q +     E      ++       +E +ER+
Sbjct: 61  FTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERL 102


>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling
           protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
          Length = 213

 Score = 30.4 bits (69), Expect = 1.4
 Identities = 3/47 (6%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 303 IQSR----ADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANI 345
           I        + ++ + +    +G   Q +   ++   ++++ +  ++
Sbjct: 142 ILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSL 188


>1ku9_A Hypothetical protein MJ223; putative transcription factor,
           homodimeric winged-helix fold, structural genomics, PSI;
           2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
          Length = 152

 Score = 29.2 bits (65), Expect = 2.5
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 70  NNVIRSLQGKNIVRAVAAKDVRRAQFV--QNYGEFMLIAKTIGKNISSTYAKLEKL--TL 125
           +  ++ L+    VR V  K  R+  +     +     IAK     I+ TY  L+KL    
Sbjct: 59  SMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKDIAKRKHDLIAKTYEDLKKLEEKC 118

Query: 126 LAKRKSLFNDKPTEIQELTYIIKEDLNSLNQ 156
             + K     K   I+ +  I ++ L +LN 
Sbjct: 119 NEEEKEFIKQKIKGIERMKKISEKILEALND 149


>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
          Length = 501

 Score = 29.9 bits (68), Expect = 3.3
 Identities = 13/119 (10%), Positives = 38/119 (31%), Gaps = 24/119 (20%)

Query: 103 MLIAKTIGKNISSTYAKLEK-------------LTLLAKRKSLFNDKPTEIQELTYIIKE 149
           +L  +++          L+              ++   + + L      +I+ L    +E
Sbjct: 40  LLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLR----EQIRSL----EE 91

Query: 150 DLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSV---VLALQSKLASMSTEFKNVL 205
           +  ++ + +  L     + +      +Q L +    +   +  L  K A +  +F    
Sbjct: 92  EKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150


>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane
           protein translocation protein- protein complex,
           ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
          Length = 429

 Score = 29.4 bits (67), Expect = 3.8
 Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 421 REILKYFQSVTSNRWLMIKIFAVLIFFFIFFVVFLAHN 458
           + I   FQ           ++   I FF +F   +  N
Sbjct: 298 KVIADMFQP---GAIFYNFLYVTFIVFFTYFYTAVLIN 332


>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein,
           nucleotide-binding, PR biosynthesis, translation,
           zinc-finger, 70S ribosome, ribos translocon; 7.10A
           {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
          Length = 435

 Score = 29.4 bits (67), Expect = 4.3
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 6/37 (16%)

Query: 421 REILKYFQSVTSNRWLMIKIFAVLIFFFIFF---VVF 454
             I  Y Q     + L + ++A  I FF FF   +VF
Sbjct: 297 TTISLYLQP---GQPLYVLLYASAIIFFCFFYTALVF 330


>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
           phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
           melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
           3gfc_A 3cfs_B 3cfv_B
          Length = 430

 Score = 29.3 bits (66), Expect = 4.3
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 10  NEAGFM--NYDIIAYGSICHDIKVHDLPDKKSKNYIGPHFSCSMTLKHH 56
           N A +M  N  +IA  +   D+ V D     SK          + L+ H
Sbjct: 132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH 180


>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory
           domain, beta sandwich, metal binding protein; 1.40A
           {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A
           3bku_A
          Length = 85

 Score = 27.4 bits (61), Expect = 4.5
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 143 LTYIIKEDLNSLNQQIAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQ 191
           L+Y+ + +   L  +I   Q    H    +++ H H+       +  L+
Sbjct: 8   LSYVYEHEKRDLASRIVSTQH--HHHDLSVATLHVHINHDDCLEIAVLK 54


>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA
           packaging podoviridae, virus assembly, tail tube, trunk
           domain; 7.50A {Enterobacteria phage P22}
          Length = 725

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 20/178 (11%), Positives = 45/178 (25%), Gaps = 16/178 (8%)

Query: 232 PPAAMSGPHHQGSVLLADEQCAIDMSDTALQQQQQQKTMMLYEDQNMSDTALQQQQQQKT 291
                          L D +    M D A +Q  Q         +        QQ +Q  
Sbjct: 544 QGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQ 603

Query: 292 MMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEMVERIDANILDTEL- 350
                 Q++  +      +   ++  + L     ++    Q     +  I  N+  ++  
Sbjct: 604 QDPAMVQAQGVLLQGQAELAKAQNQTLSLQIDAAKVEAQNQLNAARIAEIFNNMDLSKQS 663

Query: 351 ---------------HVESAHRDQNICISTKTQAHGDQNTWISTKTQACEDTVRVTVP 393
                            E A  +  + +    Q H  +    +      ++    +V 
Sbjct: 664 EFREFLKTVASFQQDRSEDARANAELLLKGDEQTHKQRMDIANILQSQRQNQPSGSVA 721


>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC,
           protein-conducting-channel, membrane, prote transport,
           translocation, transmembrane, transport; 3.20A {Thermus
           thermophilus} PDB: 2zqp_Y
          Length = 434

 Score = 29.1 bits (66), Expect = 5.4
 Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 6/37 (16%)

Query: 421 REILKYFQSVTSNRWLMIKIFAVLIFFFIFF---VVF 454
           + I  +F      R   + I  +L+  F +    V F
Sbjct: 298 QGIANFFNP---TRPSGLFIEVLLVILFTYVYTAVQF 331


>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport;
           2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
          Length = 140

 Score = 27.9 bits (62), Expect = 6.9
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 268 KTMMLYEDQNMSDTALQQQQ----QQKTMMLYE-----DQSEQFIQSRADTMQNIESTIV 318
           K M+  + + M   + +            +L E      Q      S  D M+ +     
Sbjct: 33  KEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCE 92

Query: 319 ELGGIFQQLAHMVQEQEEMVERI 341
            +     +LA   ++ +E +  I
Sbjct: 93  RMRPTLFRLASDTEDNDEALAEI 115


>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project,
           S2F, structural genomics, unknown function; 2.20A
           {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
          Length = 247

 Score = 28.0 bits (63), Expect = 8.0
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 20/80 (25%)

Query: 513 GLQC----EVSTIFIGLDFRAASRDYAFYVRQTLMKDIRCLLAHVISH---WRGASRSPK 565
           GLQ      V  I  G+    A  D A      +      ++ H   H   W+G      
Sbjct: 26  GLQVEGKETVQKIVTGVTASQALLDEA------VRLGADAVIVH---HGYFWKG----ES 72

Query: 566 SRDSSTLMKDIRCLLAHVIS 585
                     ++ LLA+ I+
Sbjct: 73  PVIRGMKRNRLKTLLANDIN 92


>3din_C Preprotein translocase subunit SECY; protein translocation,
           membrane protein, ATPase, ATP-binding membrane,
           nucleotide-binding, protein transport; HET: ADP; 4.50A
           {Thermotoga maritima MSB8}
          Length = 431

 Score = 28.3 bits (64), Expect = 8.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 433 NRWLMIKIFAVLIFFFIFFVVFLAHN 458
             +L + I+ +L+FFF +F   +  +
Sbjct: 302 GGFLYLLIYGLLVFFFTYFYSVVIFD 327


>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized,
           gamma EAR-; clathrin-adaptor, GAT domain, helical
           paper-CLIP, three-helix bundle; 2.80A {Homo sapiens}
           SCOP: a.7.8.1
          Length = 158

 Score = 27.6 bits (61), Expect = 9.1
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 268 KTMMLYEDQNMSDTALQQQQ----QQKTMMLYE-----DQSEQFIQSRADTMQNIESTIV 318
           K M+  + + M   + +            +L E      Q      S  D M+ +     
Sbjct: 42  KEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCE 101

Query: 319 ELGGIFQQLAHMVQEQEEMVERI 341
            +     +LA   ++ +E +  I
Sbjct: 102 RMRPTLFRLASDTEDNDEALAEI 124


>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane
           protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
          Length = 186

 Score = 27.7 bits (61), Expect = 9.3
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 268 KTMMLYEDQNMSDTALQQQQQQK---------TMMLYEDQSEQFIQSRADTMQNIESTIV 318
           K M+  + + M   + +    ++          M++   Q      S  D M+ +     
Sbjct: 58  KEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCE 117

Query: 319 ELGGIFQQLAHMVQEQEEMVERI 341
            +     +LA   ++ +E +  I
Sbjct: 118 RMRPTLFRLASDTEDNDEALAEI 140


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,783,950
Number of extensions: 564266
Number of successful extensions: 1232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1199
Number of HSP's successfully gapped: 64
Length of query: 672
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 572
Effective length of database: 3,909,693
Effective search space: 2236344396
Effective search space used: 2236344396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.7 bits)