RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3554
         (672 letters)



>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 196

 Score = 86.3 bits (213), Expect = 6e-20
 Identities = 29/238 (12%), Positives = 71/238 (29%), Gaps = 44/238 (18%)

Query: 98  NYGEFMLIAKTIGKNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQ 157
           ++  FM     I +++      + ++  L  ++ L      +   L + +   +      
Sbjct: 3   DFVGFMNKISQINRDLDKYDHTINQVDSL-HKRLLTEVNEEQASHLRHSLDNFVAQATDL 61

Query: 158 IAKLQQVGKHQRDVISSGHQHLLSHSSSVVLALQSKLASMSTEFKNVLEVRTENLKQAKS 217
             KL+   K  +           ++  +     + +   +  +++ V     E  K+   
Sbjct: 62  QFKLKNEIKSAQRDGIHD-----TNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAK 116

Query: 218 RRDQYSGGGAPSSLPPAAMSGPHHQGSVLLADEQCAIDMSDTALQQQQQQKTMMLYEDQN 277
           R+       A      AA+S                                      Q 
Sbjct: 117 RQYMIIQPEATEDEVEAAISDV---------------------------------GGQQI 143

Query: 278 MSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQE 335
            S   L   ++ +        +   +Q+R   +  +E ++ EL  +F  +  +V EQ+
Sbjct: 144 FSQALLNANRRGEAK-----TALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196


>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma
           chain {Escherichia coli [TaxId: 562]}
          Length = 225

 Score = 27.9 bits (62), Expect = 3.7
 Identities = 4/26 (15%), Positives = 10/26 (38%), Gaps = 3/26 (11%)

Query: 432 SNRWLMIKIFAVLIFFFIFFVVFLAH 457
             + + +   A  +F      +F+ H
Sbjct: 44  DRKGMNL---ASNLFHIGILGIFVGH 66


>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD
           {Escherichia coli [TaxId: 562]}
          Length = 113

 Score = 26.6 bits (59), Expect = 4.2
 Identities = 6/25 (24%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 435 WLMIKIFAV-LIFFFIFFVVFLAHN 458
           +++++  A+ L  + I+ V F A +
Sbjct: 14  FILVRATAIVLTLYIIYMVGFFATS 38


>d1hw7a_ d.193.1.1 (A:) Heat shock protein 33, Hsp33 {Escherichia
           coli [TaxId: 562]}
          Length = 229

 Score = 27.3 bits (60), Expect = 4.8
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 278 MSDTALQQQQQQKTMMLYEDQSEQFIQSRADTMQNIESTIVELGGIFQQLAHMVQEQEEM 337
                L+       +  Y  +SEQ + +R              GG+  Q+      Q++ 
Sbjct: 123 QGVVGLEGDTLAACLEDYFMRSEQ-LPTRLFIRTGDVDGKPAAGGMLLQVMPAQNAQQDD 181

Query: 338 VERIDA---NILDTEL 350
            + +      I   EL
Sbjct: 182 FDHLATLTETIKTEEL 197


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 26.1 bits (57), Expect = 8.0
 Identities = 7/41 (17%), Positives = 13/41 (31%)

Query: 431 TSNRWLMIKIFAVLIFFFIFFVVFLAHNCKNIESSTPPYFT 471
            S       + A+ +     F +        I + +PP F 
Sbjct: 23  VSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFV 63


>d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 287

 Score = 26.9 bits (59), Expect = 8.6
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 268 KTMMLYEDQNMSDTALQQQQQQKTMMLYEDQSEQFIQSRAD 308
           + + LYE+  + + AL      +   L     E+  ++R  
Sbjct: 14  QHVQLYENPVLQEKALTCIPVSE---LKRKAQEKLFRARKL 51


>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
           subunit I {Thermus thermophilus [TaxId: 274]}
          Length = 549

 Score = 26.9 bits (59), Expect = 9.1
 Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 426 YFQSVTSNRWLMIKIFAVLIFFFIFFVVFL 455
           Y+Q +T +  L          F    +V+L
Sbjct: 52  YYQGLTLHGVLN--AIVFTQLFAQAIMVYL 79


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 27.1 bits (59), Expect = 9.9
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 111 KNISSTYAKLEKLTLLAKRKSLFNDKPTEIQELTYIIKEDLNSLNQQIAKL 161
             +SS     +++  L     L N     I+ +   IK DL S N     L
Sbjct: 73  NLLSSNRYTEKQIGYLF-ISVLVNSNSELIRLINNAIKNDLASRNPTFMGL 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,365,951
Number of extensions: 106478
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 15
Length of query: 672
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 581
Effective length of database: 1,158,166
Effective search space: 672894446
Effective search space used: 672894446
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)