Query psy3564
Match_columns 102
No_of_seqs 109 out of 207
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 19:52:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_I Photosystem II reaction 44.5 35 0.0012 19.1 3.6 32 65-98 4-36 (38)
2 4b4a_A TATC, SEC-independent p 29.7 43 0.0015 25.0 3.2 28 15-47 68-95 (249)
3 2k4n_A Protein PF0246; beta-sh 15.8 1.1E+02 0.0038 20.3 2.7 27 24-50 27-63 (111)
4 2cly_C ATP synthase coupling f 14.0 2.1E+02 0.0071 18.1 3.5 34 30-68 15-48 (77)
5 4aw6_A CAAX prenyl protease 1 13.8 5.1E+02 0.017 20.9 8.3 30 8-37 123-152 (482)
6 2wx3_A MRNA-decapping enzyme 1 13.2 38 0.0013 20.0 -0.1 18 41-58 1-18 (51)
7 4at7_B NF90, interleukin enhan 11.5 1.6E+02 0.0054 23.7 2.9 49 40-90 289-340 (383)
8 2yvc_D Neprilysin; protein-pep 9.4 58 0.002 16.5 -0.2 20 42-64 4-23 (26)
9 1l6x_B Minimized B-domain of p 7.2 83 0.0028 17.1 -0.2 14 54-67 16-29 (34)
10 3k2t_A LMO2511 protein; lister 7.1 1E+02 0.0035 18.1 0.1 13 36-48 45-57 (57)
No 1
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=44.54 E-value=35 Score=19.06 Aligned_cols=32 Identities=28% Similarity=0.719 Sum_probs=21.6
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy3564 65 IGMGFY-LVIFFVYLYSMILSLLRDNPLDKPSQHG 98 (102)
Q Consensus 65 iKLafY-ll~FF~yLy~mI~~lv~~~~~~~~~~~~ 98 (102)
.|+.-| .++||+.| +|.-.+++||.+.+...|
T Consensus 4 LKi~Vy~vV~ffvsL--FiFGfLsnDP~RNP~rkd 36 (38)
T 3arc_I 4 LKITVYIVVTFFVLL--FVFGFLSGDPARNPKRKD 36 (38)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHTTGGGCSSSCCC
T ss_pred EEeeehhHHHHHHHH--HHccccCCCCCCCCCccc
Confidence 455555 45677776 567778888887766554
No 2
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=29.72 E-value=43 Score=24.96 Aligned_cols=28 Identities=7% Similarity=0.316 Sum_probs=22.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHhhcCCCCcccccc
Q psy3564 15 GHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDP 47 (102)
Q Consensus 15 g~W~~~llnlPll~y~~~~y~~r~~~~~~l~D~ 47 (102)
.-+..+++..|.+.|.+|++.. +|+|.-
T Consensus 68 s~~~g~~~a~P~ilyQiw~Fi~-----PgLy~~ 95 (249)
T 4b4a_A 68 SLAVGFIIASPVILYQFWRFIE-----PALYSH 95 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----TTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----ccccHh
Confidence 4467789999999999999995 466653
No 3
>2k4n_A Protein PF0246; beta-sheet, alpha-helix, mobIle loop, structural genomics, PSI-2, protein structure initiative; NMR {Pyrococcus furiosus}
Probab=15.83 E-value=1.1e+02 Score=20.34 Aligned_cols=27 Identities=30% Similarity=0.631 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHhhcCC----------CCccccccccc
Q psy3564 24 VPMSAWNVYEYYSVPS----------GNMGVFDPTEL 50 (102)
Q Consensus 24 lPll~y~~~~y~~r~~----------~~~~l~D~TeI 50 (102)
-|=++|-+|+|+-.|. ..+|-|||.|.
T Consensus 27 ~p~vfyevwky~g~pelktyviedeivepgsydppem 63 (111)
T 2k4n_A 27 KPEVFYEVWKYVGEPELKTYVIEDEIVEPGEYDPPEM 63 (111)
T ss_dssp CHHHHHHHHHHTTCCCCEEEEEEEEECCCCCCSSCTT
T ss_pred ChHHHHHHHHHcCChhheeeeeeeeecCCCCCCCccc
Confidence 3788999999998774 24688898774
No 4
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=13.99 E-value=2.1e+02 Score=18.06 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=22.4
Q ss_pred HHHHHhhcCCCCcccccccccccHHhHhHHHHHHHHHHH
Q psy3564 30 NVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMG 68 (102)
Q Consensus 30 ~~~~y~~r~~~~~~l~D~TeIfn~~~L~~~kke~~iKLa 68 (102)
-++.|-++...+-+++||+-= ..++.++..-||+
T Consensus 15 KIREYk~Ks~~~G~lVD~~Pe-----~~kel~~el~kL~ 48 (77)
T 2cly_C 15 KIREYRTKRQTSGGPVDAGPE-----YQQDLDRELFKLK 48 (77)
T ss_dssp HHHHHHHHHTCCSSSSSCCTH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCCCCCHH-----HHHHHHHHHHHHH
Confidence 467787765445789999953 4455666666654
No 5
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=13.81 E-value=5.1e+02 Score=20.95 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q psy3564 8 TVLLLLTGHYYLFLMNVPMSAWNVYEYYSV 37 (102)
Q Consensus 8 ~~lfLl~g~W~~~llnlPll~y~~~~y~~r 37 (102)
+++|+.....+..++++|+-+|.-...-+|
T Consensus 123 s~~f~~~~~l~~~l~~LP~~~Y~tfvle~~ 152 (482)
T 4aw6_A 123 SLVFLLLATLFSALAGLPWSLYNTFVIEEK 152 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHheeehhh
Confidence 456677777788999999999976555444
No 6
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=13.23 E-value=38 Score=20.02 Aligned_cols=18 Identities=6% Similarity=0.200 Sum_probs=13.3
Q ss_pred CcccccccccccHHhHhH
Q psy3564 41 NMGVFDPTELYNRDSIKN 58 (102)
Q Consensus 41 ~~~l~D~TeIfn~~~L~~ 58 (102)
++|+.||.+..++.||..
T Consensus 1 ~~~~a~~~~~Ltk~Ql~q 18 (51)
T 2wx3_A 1 GPHMADLSIILSKSQLQD 18 (51)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCCcCCCcCccCHHHHHH
Confidence 358899999887666653
No 7
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=11.55 E-value=1.6e+02 Score=23.74 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=33.9
Q ss_pred CCcccccccc---cccHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3564 40 GNMGVFDPTE---LYNRDSIKNHMRNCLIGMGFYLVIFFVYLYSMILSLLRDNP 90 (102)
Q Consensus 40 ~~~~l~D~Te---Ifn~~~L~~~kke~~iKLafYll~FF~yLy~mI~~lv~~~~ 90 (102)
++.|+.||.| .-+.+.++.++++....-|-.++-.. -++=+..++.-++
T Consensus 289 ~~pgI~DPcEk~pt~~~~~lt~qq~e~it~sAQ~~LR~~--afgq~~kVLGme~ 340 (383)
T 4at7_B 289 DGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLA--AFGQLHKVLGMDP 340 (383)
T ss_dssp TSCCCBCTTCSSCCBTTTTCCHHHHHHHHHHHHHHHHHH--HTTCHHHHTTCCC
T ss_pred CCCCccCCCCCCCccccccCCHHHHHHHHHHHHHHHHHH--hhCCcceeccCCC
Confidence 5689999988 23333778999999999888877543 3445666664333
No 8
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=9.41 E-value=58 Score=16.54 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=12.8
Q ss_pred cccccccccccHHhHhHHHHHHH
Q psy3564 42 MGVFDPTELYNRDSIKNHMRNCL 64 (102)
Q Consensus 42 ~~l~D~TeIfn~~~L~~~kke~~ 64 (102)
+...|.|||=. =+..||.+|
T Consensus 4 esqmditdina---pkpkkk~rw 23 (26)
T 2yvc_D 4 ESQMDITDINA---PKPKKKQRX 23 (26)
T ss_pred ccccccccccC---CCcchhhcc
Confidence 55789999864 344455555
No 9
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=7.21 E-value=83 Score=17.08 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=10.9
Q ss_pred HhHhHHHHHHHHHH
Q psy3564 54 DSIKNHMRNCLIGM 67 (102)
Q Consensus 54 ~~L~~~kke~~iKL 67 (102)
+.|+.++|+.+||-
T Consensus 16 ~nLtEeQrn~yI~s 29 (34)
T 1l6x_B 16 PNLNEEQRNAKIKS 29 (34)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHhHHHH
Confidence 46888999988874
No 10
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=7.09 E-value=1e+02 Score=18.08 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=9.1
Q ss_pred hcCCCCccccccc
Q psy3564 36 SVPSGNMGVFDPT 48 (102)
Q Consensus 36 ~r~~~~~~l~D~T 48 (102)
+|..|+-|++||.
T Consensus 45 rR~dG~yGlI~p~ 57 (57)
T 3k2t_A 45 SRKDGKYGLIETN 57 (57)
T ss_dssp ECTTSCEEEECC-
T ss_pred EeCCCCEEEEeeC
Confidence 4556888888874
Done!