Query psy3564
Match_columns 102
No_of_seqs 109 out of 207
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 19:53:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3564.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3564hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axti1 f.23.37.1 (I:1-35) Pho 37.7 24 0.0017 18.0 4.3 29 65-95 4-33 (35)
2 d2clyc1 f.45.1.1 (C:5-70) ATPa 16.6 80 0.0058 18.0 3.5 34 30-68 11-44 (66)
3 d1xmea1 f.24.1.1 (A:14-562) Ba 13.4 2.6E+02 0.019 21.1 7.6 49 42-92 438-486 (549)
4 d2hkja2 d.14.1.3 (A:307-470) T 10.1 87 0.0064 20.7 2.6 30 40-71 120-149 (164)
5 d1us7b_ a.205.1.1 (B:) Hsp90 c 9.8 5.1 0.00037 27.9 -4.2 22 40-63 140-161 (201)
6 d1q23a_ c.43.1.1 (A:) Chloramp 8.8 15 0.0011 24.7 -2.0 38 44-94 34-71 (214)
7 d3claa_ c.43.1.1 (A:) Chloramp 7.0 20 0.0014 23.8 -2.0 20 33-52 21-41 (213)
8 d1dpjb_ a.137.7.1 (B:) Protein 6.6 1.1E+02 0.0083 14.4 1.4 19 47-68 6-24 (29)
9 d1vqok1 b.39.1.1 (K:1-132) Rib 6.1 79 0.0058 20.0 0.8 20 47-68 106-125 (132)
10 d1f6fb1 b.1.2.1 (B:5-100) Prol 5.8 75 0.0055 17.9 0.6 10 41-50 87-96 (96)
No 1
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=37.68 E-value=24 Score=18.01 Aligned_cols=29 Identities=31% Similarity=0.768 Sum_probs=19.7
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhcCCCCCCCC
Q psy3564 65 IGMGFY-LVIFFVYLYSMILSLLRDNPLDKPS 95 (102)
Q Consensus 65 iKLafY-ll~FF~yLy~mI~~lv~~~~~~~~~ 95 (102)
.|+..| .+.||+.| +|.-.+++||.+.+.
T Consensus 4 LKi~Vy~vV~fFv~l--FiFGFLSnDP~RnP~ 33 (35)
T d2axti1 4 LKITVYIVVTFFVLL--FVFGFLSGDPARNPK 33 (35)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHTTCTTCSSC
T ss_pred EEEehhhHHHHHHHH--HHHhhccCCCCCCCC
Confidence 455555 45677776 577778888887654
No 2
>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.56 E-value=80 Score=17.99 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=22.1
Q ss_pred HHHHHhhcCCCCcccccccccccHHhHhHHHHHHHHHHH
Q psy3564 30 NVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMG 68 (102)
Q Consensus 30 ~~~~y~~r~~~~~~l~D~TeIfn~~~L~~~kke~~iKLa 68 (102)
.++.|-++..++-|++||+-= ..++.++...||+
T Consensus 11 KiREY~~Ks~~~Gg~vD~~Pe-----~~kel~~el~kl~ 44 (66)
T d2clyc1 11 KIREYRTKRQTSGGPVDAGPE-----YQQDLDRELFKLK 44 (66)
T ss_dssp HHHHHHHHHTCCSSSSSCCTH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCCCCCHH-----HHHHHHHHHHHHH
Confidence 467787664344567999964 4566666666664
No 3
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=13.37 E-value=2.6e+02 Score=21.05 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=36.1
Q ss_pred cccccccccccHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy3564 42 MGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLYSMILSLLRDNPLD 92 (102)
Q Consensus 42 ~~l~D~TeIfn~~~L~~~kke~~iKLafYll~FF~yLy~mI~~lv~~~~~~ 92 (102)
...+|..|.+. +......-+.+--...++.+...+|.++.++.+.++.+
T Consensus 438 ~~~~~~~~~~~--~~~~~~~~~~igg~i~~~g~l~f~~nl~~s~~~~~~~~ 486 (549)
T d1xmea1 438 AYIAQVPDAYP--HAAVPMVFNVLAGIVLLVALLLFIYGLFSVLLSRERKP 486 (549)
T ss_dssp CCGGGSGGGCG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCH
T ss_pred cccCCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 44666666665 55555667777778888899999999999998766543
No 4
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=10.11 E-value=87 Score=20.74 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=26.5
Q ss_pred CCcccccccccccHHhHhHHHHHHHHHHHHHH
Q psy3564 40 GNMGVFDPTELYNRDSIKNHMRNCLIGMGFYL 71 (102)
Q Consensus 40 ~~~~l~D~TeIfn~~~L~~~kke~~iKLafYl 71 (102)
|++-+-|..||.+ .++...++.-.||.-|+
T Consensus 120 sKEaIad~~EI~~--EirlAl~~~~R~L~~~l 149 (164)
T d2hkja2 120 GKESIAEVEDIEK--EIKNALMEVARKLKQYL 149 (164)
T ss_dssp TCCCBCCCHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred chhhhcCcHHHHH--HHHHHHHHHHHHHHHHH
Confidence 6788899999998 99999999999888776
No 5
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.78 E-value=5.1 Score=27.91 Aligned_cols=22 Identities=32% Similarity=0.721 Sum_probs=18.2
Q ss_pred CCcccccccccccHHhHhHHHHHH
Q psy3564 40 GNMGVFDPTELYNRDSIKNHMRNC 63 (102)
Q Consensus 40 ~~~~l~D~TeIfn~~~L~~~kke~ 63 (102)
.++|=.||.|||. +|+.+++++
T Consensus 140 ~gPggldp~eVFe--slP~emQ~a 161 (201)
T d1us7b_ 140 LGPGGLDPVEVYE--SLPEELQKC 161 (201)
T ss_dssp CCTTSCCHHHHHH--HSCTTCCCC
T ss_pred CCCCCCCHHHHHH--hCCHHHHHH
Confidence 4688899999998 898887664
No 6
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=8.77 E-value=15 Score=24.67 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=22.4
Q ss_pred cccccccccHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy3564 44 VFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLYSMILSLLRDNPLDKP 94 (102)
Q Consensus 44 l~D~TeIfn~~~L~~~kke~~iKLafYll~FF~yLy~mI~~lv~~~~~~~~ 94 (102)
-+|+|+..+ ..++ + | ++|+-++-+.+...+++.|.-+.
T Consensus 34 ~vDvT~l~~--~~K~---~---~-----~sf~~~~~~av~~Al~~~P~~n~ 71 (214)
T d1q23a_ 34 QLDITAFLK--TVKK---N---K-----HKFYPAFIHILARLMNAHPEFRM 71 (214)
T ss_dssp EEECHHHHH--HHHH---T---T-----CCHHHHHHHHHHHHHTTCGGGSE
T ss_pred EEcHHHHHH--HHHH---c---C-----CCcHHHHHHHHHHHHHhChHhhe
Confidence 489998875 2222 2 1 34566655566666777666554
No 7
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=6.96 E-value=20 Score=23.82 Aligned_cols=20 Identities=15% Similarity=-0.105 Sum_probs=12.0
Q ss_pred HHhhcCC-CCccccccccccc
Q psy3564 33 EYYSVPS-GNMGVFDPTELYN 52 (102)
Q Consensus 33 ~y~~r~~-~~~~l~D~TeIfn 52 (102)
+=+..|+ +=+--+|+|+..+
T Consensus 21 ~~~~~P~~~~t~~vDvT~l~~ 41 (213)
T d3claa_ 21 RHRLPCGFSLTSKIDITTLKK 41 (213)
T ss_dssp HHTSCCEEEEEEEEECHHHHH
T ss_pred hCCCCCEEEEEEEEeHHHHHH
Confidence 3344554 3344689998765
No 8
>d1dpjb_ a.137.7.1 (B:) Proteinase A inhibitor IA3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.58 E-value=1.1e+02 Score=14.39 Aligned_cols=19 Identities=5% Similarity=-0.025 Sum_probs=13.6
Q ss_pred ccccccHHhHhHHHHHHHHHHH
Q psy3564 47 PTELYNRDSIKNHMRNCLIGMG 68 (102)
Q Consensus 47 ~TeIfn~~~L~~~kke~~iKLa 68 (102)
+.||| |-++||-.+=.|..
T Consensus 6 vseif---qsskeklqgdakvv 24 (29)
T d1dpjb_ 6 VSEIF---QSSKEKLQGDAKVV 24 (29)
T ss_dssp HHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHH---HHhHHHhccchhHH
Confidence 56888 67788877766653
No 9
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=6.11 E-value=79 Score=20.01 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.9
Q ss_pred ccccccHHhHhHHHHHHHHHHH
Q psy3564 47 PTELYNRDSIKNHMRNCLIGMG 68 (102)
Q Consensus 47 ~TeIfn~~~L~~~kke~~iKLa 68 (102)
-|.||. ...+|-|+.|-|++
T Consensus 106 GTRI~G--pV~~Elr~k~~Ki~ 125 (132)
T d1vqok1 106 GTELKG--PIAREVAQRFGSVA 125 (132)
T ss_dssp SSCBCS--CBCHHHHHHSHHHH
T ss_pred eeEEec--cHhHHHHhhhhHHH
Confidence 488997 89999999998875
No 10
>d1f6fb1 b.1.2.1 (B:5-100) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.85 E-value=75 Score=17.93 Aligned_cols=10 Identities=20% Similarity=-0.001 Sum_probs=7.0
Q ss_pred Cccccccccc
Q psy3564 41 NMGVFDPTEL 50 (102)
Q Consensus 41 ~~~l~D~TeI 50 (102)
.+..+|||+|
T Consensus 87 d~l~~d~~~i 96 (96)
T d1f6fb1 87 DPLYVDVTYI 96 (96)
T ss_dssp CCEEEEGGGC
T ss_pred ccEEEecccC
Confidence 3466888887
Done!