RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3564
         (102 letters)



>gnl|CDD|217486 pfam03311, Cornichon, Cornichon protein. 
          Length = 128

 Score = 78.0 bits (193), Expect = 4e-20
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 1   MGAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHM 60
                 + +L LLTGH+++FL+N+P+ A+NVY YY        + D TE++    +  H 
Sbjct: 55  YILHGFLCLLFLLTGHWFVFLLNLPLLAYNVYLYYKRT----HLLDATEIFRT--LSKHK 108

Query: 61  RNCLIGMGFYLVIFFVYLYS 80
           R   I + FYL++FF YLY 
Sbjct: 109 RESFIKLAFYLLLFFYYLYR 128


>gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta;
           Reviewed.
          Length = 552

 Score = 27.5 bits (62), Expect = 1.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 44  VFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFV 76
           VF    L+  + ++  +R+ ++G+GF  V+ F 
Sbjct: 352 VFTIGRLHPIEKLERAIRDLMVGLGFQEVMNFT 384


>gnl|CDD|219290 pfam07084, Spot_14, Thyroid hormone-inducible hepatic protein Spot
           14.  This family consists of several thyroid
           hormone-inducible hepatic protein (Spot 14 or S14)
           sequences. Mainly expressed in tissues that synthesise
           triglycerides, the mRNA coding for Spot 14 has been
           shown to be increased in rat liver by insulin, dietary
           carbohydrates, glucose in hepatocyte culture medium, as
           well as thyroid hormone. In contrast, dietary fats and
           polyunsaturated fatty acids, have been shown to decrease
           the amount of Spot 14 mRNA, while an elevated level of
           cAMP acts as a dominant negative factor. In addition,
           liver-specific factors or chromatin organisation of the
           gene have been shown to contribute to the regulation of
           its expression. Spot 14 protein is thought to be
           required for induction of hepatic lipogenesis.
          Length = 160

 Score = 26.7 bits (59), Expect = 1.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 81  MILSLLRDNPLDKPSQHGAV 100
           M+ SLLRD PLD+  +   V
Sbjct: 31  MVPSLLRDVPLDQEGEDQVV 50


>gnl|CDD|235968 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit
           beta; Validated.
          Length = 369

 Score = 25.3 bits (56), Expect = 7.1
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)

Query: 68  GFYLV---IFFVYLYSMILSLLRDN 89
            FY +   IFF   ++ ILSL R N
Sbjct: 208 AFYCIMEGIFFYVGFTQILSLGRQN 232


>gnl|CDD|225132 COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope
           biogenesis, outer membrane].
          Length = 340

 Score = 25.0 bits (55), Expect = 7.8
 Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 71  LVIFFVYLYSMI--LSLLRDNPLDKPSQHGAVEY 102
            ++  V    +   L++ R +  D P  +G V+ 
Sbjct: 304 PLLSLVVAQRLAYALAVARGHNPDTPRYYGLVKV 337


>gnl|CDD|234536 TIGR04312, choice_anch_B, choice-of-anchor B domain.  This domain,
           about 385 amino acids long, can have either of at least
           two types of C-terminal sorting signal. Members from
           Shewanella and allies have the rhombosortase target
           domain GlyGly-CTERM (TIGR03501), while members of the
           Bacteroidetes have the Por secretion system C-terminal
           domain (TIGR04183). Most other members lack any
           C-terminal extension, but in most of those, the normal
           signal sequence is replaced by a lipoprotein signal
           sequence. Member sequences show a region of local
           similarity to the LVIVD repeat sequence (pfam08309).
          Length = 364

 Score = 25.0 bits (55), Expect = 8.1
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 2/19 (10%)

Query: 28  AWNVYEYYSVPSGNMGVFD 46
           AW+VY Y+  PSGN+ V D
Sbjct: 338 AWSVYPYF--PSGNILVSD 354


>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
          Provisional.
          Length = 606

 Score = 25.1 bits (55), Expect = 9.1
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 55 SIKNHMRNCLI-GMGFYLVIFFVYLYSMILSLL 86
           I NH+RN L   +  ++V+ F +  S     L
Sbjct: 4  KILNHIRNILGHAIIHFVVLEFCFYISGAFFAL 36


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.143    0.447 

Gapped
Lambda     K      H
   0.267   0.0785    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,382,115
Number of extensions: 455967
Number of successful extensions: 784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 35
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)