RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3564
         (102 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.3 bits (73), Expect = 0.016
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 26/58 (44%)

Query: 41   NMGVFDPTELYNR--------DSIKNHMRNCLIGMGFYLVIFFVYLYSMILSLLRDNP 90
             MG+    +LY          +   NH ++     GF            IL ++ +NP
Sbjct: 1630 GMGM----DLYKTSKAAQDVWNRADNHFKDTY---GF-----------SILDIVINNP 1669


>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN
           protein structure initiative; 2.30A {Vibrio
           parahaemolyticus}
          Length = 586

 Score = 26.7 bits (58), Expect = 1.5
 Identities = 9/41 (21%), Positives = 15/41 (36%)

Query: 17  YYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIK 57
            YL     PM  WN+ +  S+  G+  +   T     +   
Sbjct: 157 NYLNPQQTPMVVWNILKGLSLLEGSEDIAAFTRTRLIEEAL 197


>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation,
           cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A
           {Saccharomyces cerevisiae}
          Length = 370

 Score = 25.8 bits (57), Expect = 2.8
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 17  YYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCL 64
           Y LF M   +  W    Y +            ++Y RD I+ H R CL
Sbjct: 134 YTLFDMYDDVYGWPKGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACL 181


>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga
           maritima} PDB: 2p3v_A*
          Length = 256

 Score = 25.2 bits (56), Expect = 3.8
 Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 16/55 (29%)

Query: 44  VFDPT--ELY----------N----RDSIKNHMRNCLIGMGFYLVIFFVYLYSMI 82
           V  P   E            N    R S    +  C+   G Y+     ++  M 
Sbjct: 111 VHAPALNETLYAEEGSGAFFNGERIRVSENASLEECVGSTGSYVDFTGKFIERME 165


>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase,
           alpha/alpha barrel, hydrolase; HET: BMA; 1.50A
           {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
          Length = 761

 Score = 24.8 bits (53), Expect = 6.7
 Identities = 6/38 (15%), Positives = 9/38 (23%)

Query: 18  YLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDS 55
                N       V      PS     F   + +  D+
Sbjct: 289 ETLNGNWRSPGGAVKFNTVTPSVTGRWFSGNQTWPWDT 326


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.143    0.447 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,615,144
Number of extensions: 81570
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 5
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)