Query psy3565
Match_columns 168
No_of_seqs 129 out of 170
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 19:54:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixs_B RING1 and YY1-binding p 99.9 5.1E-24 1.7E-28 135.6 2.1 36 103-138 2-37 (37)
2 2d9g_A YY1-associated factor 2 99.5 4.6E-15 1.6E-19 99.8 4.0 47 19-65 6-52 (53)
3 3gj3_B Nuclear pore complex pr 99.4 4E-14 1.4E-18 87.9 2.2 30 21-50 4-33 (33)
4 3gj5_B Nuclear pore complex pr 99.4 5.9E-14 2E-18 87.8 2.0 31 20-50 3-33 (34)
5 2ebq_A Nuclear pore complex pr 99.4 1.8E-13 6.1E-18 91.0 3.5 41 18-58 5-45 (47)
6 2ebr_A Nuclear pore complex pr 99.2 8.2E-12 2.8E-16 82.7 2.8 33 20-52 7-39 (47)
7 2ebv_A Nuclear pore complex pr 99.1 4E-11 1.4E-15 82.4 2.5 31 20-50 27-57 (57)
8 3gj7_B Nuclear pore complex pr 98.9 2.2E-10 7.5E-15 84.9 2.2 31 20-50 68-98 (98)
9 3gj8_B Nuclear pore complex pr 98.7 4.7E-09 1.6E-13 76.1 2.2 31 20-50 61-91 (92)
10 3a9j_C Mitogen-activated prote 98.5 4E-08 1.4E-12 59.7 2.5 29 21-49 5-33 (34)
11 3gj7_B Nuclear pore complex pr 98.5 1.1E-08 3.9E-13 75.7 0.0 32 21-52 6-37 (98)
12 3gj8_B Nuclear pore complex pr 98.4 2.4E-08 8.1E-13 72.4 0.0 31 21-51 5-35 (92)
13 1nj3_A NPL4; NZF domain, rubre 98.4 9.7E-08 3.3E-12 56.9 2.5 28 21-48 3-30 (31)
14 2crc_A Ubiquitin conjugating e 97.7 3.1E-05 1.1E-09 51.9 3.6 32 21-52 7-38 (52)
15 2lk0_A RNA-binding protein 5; 97.3 0.00011 3.9E-09 44.3 2.1 30 21-50 2-31 (32)
16 3b08_B Ranbp-type and C3HC4-ty 97.2 0.0002 6.7E-09 50.1 3.1 32 21-52 5-36 (64)
17 2k1p_A Zinc finger RAN-binding 96.7 0.00088 3E-08 40.7 2.3 30 21-50 3-32 (33)
18 1n0z_A ZNF265; zinc finger, RN 95.8 0.0053 1.8E-07 39.6 2.7 32 20-51 10-43 (45)
19 1w7p_D VPS36P, YLR417W; ESCRT- 92.5 0.023 7.9E-07 52.8 0.0 27 24-50 180-206 (566)
20 2j9u_B VPS36, vacuolar protein 88.3 0.18 6.3E-06 36.3 1.6 29 22-50 15-52 (76)
21 1w7p_D VPS36P, YLR417W; ESCRT- 84.8 0.18 6.2E-06 46.9 0.0 34 22-55 115-157 (566)
22 3gs2_B Chromobox protein homol 80.7 1.4 4.6E-05 26.6 2.8 16 118-133 5-20 (30)
23 2kn9_A Rubredoxin; metalloprot 74.1 2.1 7.1E-05 30.8 2.7 45 5-49 8-71 (81)
24 1lko_A Rubrerythrin all-iron(I 70.9 1.4 4.7E-05 34.7 1.2 24 24-49 155-182 (191)
25 2cr8_A MDM4 protein; ZF-ranbp 63.3 5.1 0.00017 27.1 2.6 30 21-50 8-37 (53)
26 1e8j_A Rubredoxin; iron-sulfur 62.8 3.8 0.00013 26.8 1.9 26 24-49 3-47 (52)
27 4rxn_A Rubredoxin; electron tr 62.2 3.3 0.00011 27.5 1.5 26 24-49 3-47 (54)
28 1yk4_A Rubredoxin, RD; electro 58.3 4 0.00014 26.7 1.4 26 24-49 2-46 (52)
29 1s24_A Rubredoxin 2; electron 58.1 5.2 0.00018 29.0 2.1 29 21-49 32-79 (87)
30 6rxn_A Rubredoxin; electron tr 55.2 5 0.00017 25.8 1.5 27 23-49 3-41 (46)
31 2c6a_A Ubiquitin-protein ligas 48.5 9.2 0.00032 25.1 1.9 30 21-50 10-39 (46)
32 1dx8_A Rubredoxin; electron tr 46.7 7.9 0.00027 26.7 1.5 29 22-50 5-52 (70)
33 2v3b_B Rubredoxin 2, rubredoxi 43.7 8.9 0.0003 25.2 1.3 26 24-49 3-47 (55)
34 1wii_A Hypothetical UPF0222 pr 38.2 14 0.00049 26.4 1.8 30 19-48 18-57 (85)
35 2ayj_A 50S ribosomal protein L 36.5 19 0.00067 24.3 2.1 27 21-47 16-42 (56)
36 2cot_A Zinc finger protein 435 35.9 20 0.00069 22.1 2.0 35 13-47 7-55 (77)
37 2wjy_A Regulator of nonsense t 34.8 13 0.00044 35.1 1.3 26 20-45 2-27 (800)
38 2yrc_A Protein transport prote 32.8 14 0.00047 24.6 0.9 13 24-36 33-45 (59)
39 1fp0_A KAP-1 corepressor; PHD 31.0 17 0.0006 26.0 1.2 15 21-35 60-74 (88)
40 2l43_A N-teminal domain from h 28.8 10 0.00036 26.6 -0.3 19 21-39 63-81 (88)
41 2yt5_A Metal-response element- 28.1 11 0.00037 24.4 -0.3 16 21-36 49-64 (66)
42 3j21_g 50S ribosomal protein L 26.9 32 0.0011 22.6 1.9 25 23-47 13-37 (51)
43 3a43_A HYPD, hydrogenase nicke 26.6 28 0.00095 26.2 1.7 29 21-49 67-118 (139)
44 3m05_A Uncharacterized protein 26.4 44 0.0015 24.9 2.8 22 110-131 86-107 (114)
45 2xzl_A ATP-dependent helicase 24.3 21 0.00072 33.6 0.8 25 21-45 8-32 (802)
46 2l5u_A Chromodomain-helicase-D 23.5 24 0.00081 22.9 0.7 13 21-33 46-58 (61)
47 2kdx_A HYPA, hydrogenase/ureas 23.3 44 0.0015 24.0 2.2 29 21-49 70-101 (119)
48 4gne_A Histone-lysine N-methyl 22.3 28 0.00097 25.5 1.0 26 21-46 50-77 (107)
49 3o36_A Transcription intermedi 21.1 65 0.0022 24.4 2.9 17 21-37 39-55 (184)
No 1
>3ixs_B RING1 and YY1-binding protein; RING1B, RYBP, polycomb, E3-ligase, chromosomal protein, TRAN regulation, chromatin regulator; HET: NHE; 1.70A {Homo sapiens}
Probab=99.88 E-value=5.1e-24 Score=135.60 Aligned_cols=36 Identities=53% Similarity=0.800 Sum_probs=30.9
Q ss_pred CCCCcCCCcCCCCceEEEEeCCeeEEEeeccCCcCC
Q psy3565 103 NPPKLKHVDRTTAQTLEITVNNLTVKVTEFKPKIKK 138 (168)
Q Consensus 103 ~rpRLKnVDRSSAq~~eVTVg~vTViITefK~K~~~ 138 (168)
+|||||||||||||++|||||||||||||||||.++
T Consensus 2 ~rprLkNvDRssaq~~~VTV~~vTViITe~k~k~~s 37 (37)
T 3ixs_B 2 TRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRS 37 (37)
T ss_dssp --CCCSSEEEEEEEEEEEEETTEEEEEEEEEEC---
T ss_pred CCccccccccccceEEEEEECcEEEEEEecccccCC
Confidence 589999999999999999999999999999999764
No 2
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.6e-15 Score=99.84 Aligned_cols=47 Identities=68% Similarity=1.179 Sum_probs=44.0
Q ss_pred cCCCCceeccccceeccccccceecCCCCCCCCCCCCCCCccchhhh
Q psy3565 19 AKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRITPDLVAQV 65 (168)
Q Consensus 19 ~k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~strk~r~~s~lvaQq 65 (168)
..+++.|+|++|||+|++.+.+|.||++|++.++++++++.+||||.
T Consensus 6 ~~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s~~~p~~n~~~~~~~ 52 (53)
T 2d9g_A 6 SGDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQSGPSS 52 (53)
T ss_dssp SSCCCCEECSSSCCEECSSCSSCSSSCCCCCCCCCCSCCCCCCCCSC
T ss_pred CCCCCCcCCCCCccCCCCCCCccCCCCCcCCccccCccccccccccC
Confidence 34788999999999999999999999999999999999999999974
No 3
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=99.42 E-value=4e-14 Score=87.86 Aligned_cols=30 Identities=37% Similarity=0.840 Sum_probs=26.6
Q ss_pred CCCceeccccceeccccccceecCCCCCCC
Q psy3565 21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGT 50 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~ 50 (168)
++|+|+|++|+|+|++++++|+||++|||.
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg 33 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPKPG 33 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCceeCCcccCCCccccCEEcccCCCCCC
Confidence 689999999999999999999999999974
No 4
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=99.40 E-value=5.9e-14 Score=87.77 Aligned_cols=31 Identities=35% Similarity=0.782 Sum_probs=25.9
Q ss_pred CCCCceeccccceeccccccceecCCCCCCC
Q psy3565 20 KDENYWDCSVCTYRNVAEAFKCSMCDVRKGT 50 (168)
Q Consensus 20 k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~ 50 (168)
.++|+|+|++|+|+|.+++++|+||++|||.
T Consensus 3 ~~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg 33 (34)
T 3gj5_B 3 LGSGSWDCEVCLVQNKADSTKCIACESAKPG 33 (34)
T ss_dssp ---CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred CCCCceECCeeEeECccccCEEcccCCcCCC
Confidence 4789999999999999999999999999986
No 5
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.8e-13 Score=90.96 Aligned_cols=41 Identities=32% Similarity=0.625 Sum_probs=36.8
Q ss_pred ccCCCCceeccccceeccccccceecCCCCCCCCCCCCCCC
Q psy3565 18 QAKDENYWDCSVCTYRNVAEAFKCSMCDVRKGTSTRKPRIT 58 (168)
Q Consensus 18 ~~k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~strk~r~~ 58 (168)
...++|.|+|++|+|+|.+++++|++|++||+.+..++.+.
T Consensus 5 ~~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~~~~~l~ 45 (47)
T 2ebq_A 5 SSGVIGTWDCDTCLVQNKPEAIKCVACETPKPGTCVKRALT 45 (47)
T ss_dssp CCCCSSSEECSSSCCEECSSCSBCSSSCCBCSCSSCGGGSC
T ss_pred cCCCCCceECCeeeccCccCCceecCcCCCCCCCccCcccc
Confidence 34589999999999999999999999999999998777654
No 6
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=8.2e-12 Score=82.74 Aligned_cols=33 Identities=33% Similarity=0.768 Sum_probs=30.9
Q ss_pred CCCCceeccccceeccccccceecCCCCCCCCC
Q psy3565 20 KDENYWDCSVCTYRNVAEAFKCSMCDVRKGTST 52 (168)
Q Consensus 20 k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~st 52 (168)
+++|.|+|++|+|+|.+++.+|++|++|++.+.
T Consensus 7 ~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 7 GPEGSWDCELCLVQNKADSTKCLACESAKPGTK 39 (47)
T ss_dssp SCCSSCCCSSSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred CCCCeeECCeeecCCcCCcceecCcCCCCCCCc
Confidence 488999999999999999999999999999864
No 7
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=4e-11 Score=82.37 Aligned_cols=31 Identities=39% Similarity=0.714 Sum_probs=29.2
Q ss_pred CCCCceeccccceeccccccceecCCCCCCC
Q psy3565 20 KDENYWDCSVCTYRNVAEAFKCSMCDVRKGT 50 (168)
Q Consensus 20 k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~ 50 (168)
+++|.|+|++|+|+|.+++.+|++|++|||.
T Consensus 27 ~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG 57 (57)
T 2ebv_A 27 RPIGSWECSVCCVSNNAEDNKCVSCMSEKPG 57 (57)
T ss_dssp CCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred CCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence 3799999999999999999999999999974
No 8
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=98.94 E-value=2.2e-10 Score=84.93 Aligned_cols=31 Identities=35% Similarity=0.771 Sum_probs=26.6
Q ss_pred CCCCceeccccceeccccccceecCCCCCCC
Q psy3565 20 KDENYWDCSVCTYRNVAEAFKCSMCDVRKGT 50 (168)
Q Consensus 20 k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~ 50 (168)
+++|+|+|++|+|+|++++.+|++|++|||.
T Consensus 68 ~~~g~W~C~~C~~~N~~~~~~C~aC~tpkPg 98 (98)
T 3gj7_B 68 PAIGTWDCDTCLVQNKPEAVKCVACETPKPG 98 (98)
T ss_dssp ---CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred CCCCcccCCcCcCCChhhcceecccCCCCCC
Confidence 4789999999999999999999999999974
No 9
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=98.69 E-value=4.7e-09 Score=76.08 Aligned_cols=31 Identities=42% Similarity=0.866 Sum_probs=26.7
Q ss_pred CCCCceeccccceeccccccceecCCCCCCC
Q psy3565 20 KDENYWDCSVCTYRNVAEAFKCSMCDVRKGT 50 (168)
Q Consensus 20 k~eg~WdCsvCt~rN~asA~KCv~C~tpk~~ 50 (168)
+++|.|+|++|+|+|+++..+|++|+++||.
T Consensus 61 ~~~g~W~C~~C~~~N~a~~~~C~~C~~pkp~ 91 (92)
T 3gj8_B 61 KPEGSWDCEVCLVQNKADSTKCIACESAKPG 91 (92)
T ss_dssp ---CCEECTTTCCEECSSCSBCTTTCCBCC-
T ss_pred CCCCcccCCcCCcCChhhcccccccCCCCCC
Confidence 3789999999999999999999999999986
No 10
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=98.52 E-value=4e-08 Score=59.69 Aligned_cols=29 Identities=24% Similarity=0.828 Sum_probs=26.8
Q ss_pred CCCceeccccceeccccccceecCCCCCC
Q psy3565 21 DENYWDCSVCTYRNVAEAFKCSMCDVRKG 49 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~ 49 (168)
+++.|.|.+|||.|.+....|.||+++++
T Consensus 5 ~~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 5 MGAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 56789999999999999999999999875
No 11
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=98.52 E-value=1.1e-08 Score=75.69 Aligned_cols=32 Identities=25% Similarity=0.588 Sum_probs=0.0
Q ss_pred CCCceeccccceeccccccceecCCCCCCCCC
Q psy3565 21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGTST 52 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~st 52 (168)
...+|+|++|+|+|++++.+|++|++|++...
T Consensus 6 ~~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~ 37 (98)
T 3gj7_B 6 AGSSWQCDTCLLQNKVTDNKCIACQAAKLPLK 37 (98)
T ss_dssp --------------------------------
T ss_pred CCCcccCCccccCChhhcccccccCCCCCCCc
Confidence 46789999999999999999999999998643
No 12
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=98.44 E-value=2.4e-08 Score=72.39 Aligned_cols=31 Identities=32% Similarity=0.700 Sum_probs=0.0
Q ss_pred CCCceeccccceeccccccceecCCCCCCCC
Q psy3565 21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGTS 51 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~s 51 (168)
.+|+|+|.+|+|+|++++.+|++|++||+..
T Consensus 5 ~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~ 35 (92)
T 3gj8_B 5 SVGSWECPVCCVSNKAEDSRCVSCTSEKPGL 35 (92)
T ss_dssp -------------------------------
T ss_pred CCcCCCCCcCCCEeccccceecccCCCCCCC
Confidence 4799999999999999999999999999864
No 13
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=98.43 E-value=9.7e-08 Score=56.95 Aligned_cols=28 Identities=29% Similarity=0.834 Sum_probs=25.8
Q ss_pred CCCceeccccceeccccccceecCCCCC
Q psy3565 21 DENYWDCSVCTYRNVAEAFKCSMCDVRK 48 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk 48 (168)
+++.|.|+.|||.|.+....|.||++++
T Consensus 3 ~~~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 3 TSAMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CSCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred CCccccCCcccccCCCCCCccCCcCCCC
Confidence 4568999999999999999999999986
No 14
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=97.68 E-value=3.1e-05 Score=51.91 Aligned_cols=32 Identities=25% Similarity=0.548 Sum_probs=28.5
Q ss_pred CCCceeccccceeccccccceecCCCCCCCCC
Q psy3565 21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGTST 52 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~st 52 (168)
.+..|.|..|||.|.+....|.||.++++...
T Consensus 7 ~~~~W~Cp~CTf~N~p~~~~CemC~~prp~~~ 38 (52)
T 2crc_A 7 GPVGWQCPGCTFINKPTRPGCEMCCRARPEAY 38 (52)
T ss_dssp CSSSBCCTTTCCCBCTTCSSCSSSCCCCCTTS
T ss_pred CCCCccCCCcccccCCCCCeeCCCCCcCCccc
Confidence 45589999999999999999999999988643
No 15
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=97.27 E-value=0.00011 Score=44.35 Aligned_cols=30 Identities=27% Similarity=0.583 Sum_probs=27.8
Q ss_pred CCCceeccccceeccccccceecCCCCCCC
Q psy3565 21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGT 50 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~ 50 (168)
++|-|.|..|.+.|.+.-..|..|++|++.
T Consensus 2 k~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~ 31 (32)
T 2lk0_A 2 KFEDWLCNKCCLNNFRKRLKCFRCGADKFD 31 (32)
T ss_dssp CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred CCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence 468999999999999999999999999864
No 16
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=97.23 E-value=0.0002 Score=50.05 Aligned_cols=32 Identities=25% Similarity=0.519 Sum_probs=28.4
Q ss_pred CCCceeccccceeccccccceecCCCCCCCCC
Q psy3565 21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGTST 52 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~st 52 (168)
....|.|..|||.|.+...-|.||.++++...
T Consensus 5 ~~~~W~CP~CTf~N~p~~p~CEmC~~prp~~~ 36 (64)
T 3b08_B 5 MPVGWQCPGCTFINKPTRPGCEMCCRARPETY 36 (64)
T ss_dssp CCCSEECTTTCCEECTTCSBCTTTCCBCCSSC
T ss_pred CCCCCcCCCccccCCCCCCccCcCCCCCCccc
Confidence 34579999999999999999999999988754
No 17
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=96.69 E-value=0.00088 Score=40.66 Aligned_cols=30 Identities=33% Similarity=0.766 Sum_probs=27.9
Q ss_pred CCCceeccccceeccccccceecCCCCCCC
Q psy3565 21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGT 50 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~ 50 (168)
.+|-|.|..|-+.|.+.-..|-.|.+|++.
T Consensus 3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~ 32 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWARRSECNMCNTPKYA 32 (33)
T ss_dssp SSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred CCCCcccCCCCCccccccccccccCCcCCC
Confidence 578899999999999999999999999864
No 18
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=95.85 E-value=0.0053 Score=39.63 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=29.3
Q ss_pred CCCCceecc--ccceeccccccceecCCCCCCCC
Q psy3565 20 KDENYWDCS--VCTYRNVAEAFKCSMCDVRKGTS 51 (168)
Q Consensus 20 k~eg~WdCs--vCt~rN~asA~KCv~C~tpk~~s 51 (168)
.++|-|.|. .|-+.|.+.-..|-.|.+|++..
T Consensus 10 ~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~ 43 (45)
T 1n0z_A 10 VSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG 43 (45)
T ss_dssp SCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred CCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence 478999999 89999999999999999998763
No 19
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=92.46 E-value=0.023 Score=52.84 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=0.0
Q ss_pred ceeccccceeccccccceecCCCCCCC
Q psy3565 24 YWDCSVCTYRNVAEAFKCSMCDVRKGT 50 (168)
Q Consensus 24 ~WdCsvCt~rN~asA~KCv~C~tpk~~ 50 (168)
.-.|+.|||.|-|+-..|.||+++=+.
T Consensus 180 ~~~CP~CTF~NHPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 180 ENICPACTFANHPQIGNCEICGHRLPN 206 (566)
T ss_dssp ---------------------------
T ss_pred CCCCCcccccCChhhhcccccCCcCCC
Confidence 466999999999999999999999876
No 20
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=88.33 E-value=0.18 Score=36.29 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=23.0
Q ss_pred CCceeccccceecccccc---------ceecCCCCCCC
Q psy3565 22 ENYWDCSVCTYRNVAEAF---------KCSMCDVRKGT 50 (168)
Q Consensus 22 eg~WdCsvCt~rN~asA~---------KCv~C~tpk~~ 50 (168)
...|-|..|.|-|...+. .|++|+.+...
T Consensus 15 ~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~~ 52 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADY 52 (76)
T ss_dssp CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCCH
T ss_pred ccceECccccccCcCccccCCCCCCCCcccccCccCCH
Confidence 357999999999986554 69999887654
No 21
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=84.77 E-value=0.18 Score=46.92 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=0.0
Q ss_pred CCceeccccceecccc---------ccceecCCCCCCCCCCCC
Q psy3565 22 ENYWDCSVCTYRNVAE---------AFKCSMCDVRKGTSTRKP 55 (168)
Q Consensus 22 eg~WdCsvCt~rN~as---------A~KCv~C~tpk~~strk~ 55 (168)
...|.|.+|.|.|.+. ...|.+|+.+.+..+-+.
T Consensus 115 ~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~ 157 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKS 157 (566)
T ss_dssp -------------------------------------------
T ss_pred ccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhh
Confidence 4579999999999963 468999999987766443
No 22
>3gs2_B Chromobox protein homolog 7; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens}
Probab=80.69 E-value=1.4 Score=26.60 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=14.5
Q ss_pred EEEEeCCeeEEEeecc
Q psy3565 118 LEITVNNLTVKVTEFK 133 (168)
Q Consensus 118 ~eVTVg~vTViITefK 133 (168)
.+||+|.+||.|.||.
T Consensus 5 tdvt~n~ltvTi~e~~ 20 (30)
T 3gs2_B 5 TDITANSITVTFREAQ 20 (30)
T ss_dssp EEEEETTEEEEEEEES
T ss_pred EEeecCcEEEEEEecC
Confidence 5799999999999985
No 23
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=74.11 E-value=2.1 Score=30.77 Aligned_cols=45 Identities=16% Similarity=0.458 Sum_probs=28.7
Q ss_pred CCCCCCCchhhhhccCCCCceeccccceec-------------------cccccceecCCCCCC
Q psy3565 5 GMDRKTPTKRRRKQAKDENYWDCSVCTYRN-------------------VAEAFKCSMCDVRKG 49 (168)
Q Consensus 5 ~m~~~~~~~r~kr~~k~eg~WdCsvCt~rN-------------------~asA~KCv~C~tpk~ 49 (168)
-||-.-..........+...|-|.+|-|.= .++.+.|..|+.+|.
T Consensus 8 ~~~~~~~~~~g~~~~~em~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~ 71 (81)
T 2kn9_A 8 HMGTLEAQTQGPGSMNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKS 71 (81)
T ss_dssp CCCCCCCCCCCCCCSSCCCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCGG
T ss_pred cccceeecccCCcCCCCcceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHH
Confidence 456443333222223355689999997753 356679999999864
No 24
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=70.95 E-value=1.4 Score=34.71 Aligned_cols=24 Identities=33% Similarity=0.869 Sum_probs=19.4
Q ss_pred ceecccccee----ccccccceecCCCCCC
Q psy3565 24 YWDCSVCTYR----NVAEAFKCSMCDVRKG 49 (168)
Q Consensus 24 ~WdCsvCt~r----N~asA~KCv~C~tpk~ 49 (168)
.|-|.+|-|- +.|. +|..|++|+.
T Consensus 155 ~~~C~~CG~~~~g~~~p~--~CP~C~~~k~ 182 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPE--LCPACAHPKA 182 (191)
T ss_dssp EEEETTTCCEEEEEECCS--BCTTTCCBGG
T ss_pred eEEECCCCCEeeCCCCCC--CCCCCcCCHH
Confidence 7999999876 3344 9999999874
No 25
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=63.29 E-value=5.1 Score=27.07 Aligned_cols=30 Identities=23% Similarity=0.518 Sum_probs=26.8
Q ss_pred CCCceeccccceeccccccceecCCCCCCC
Q psy3565 21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGT 50 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~ 50 (168)
.+..|.|.-|--+|.|-.-.|.-|-.-+..
T Consensus 8 ~eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~ 37 (53)
T 2cr8_A 8 SEDEWQCTECKKFNSPSKRYCFRCWALRKD 37 (53)
T ss_dssp CSCCEECSSSCCEECSSCCBCTTTCCBCCC
T ss_pred CcceeecccccccCCCccchhHHHHHhhcc
Confidence 688999999999999999999999776543
No 26
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=62.79 E-value=3.8 Score=26.79 Aligned_cols=26 Identities=27% Similarity=0.838 Sum_probs=20.6
Q ss_pred ceeccccceecc-------------------ccccceecCCCCCC
Q psy3565 24 YWDCSVCTYRNV-------------------AEAFKCSMCDVRKG 49 (168)
Q Consensus 24 ~WdCsvCt~rN~-------------------asA~KCv~C~tpk~ 49 (168)
.|-|.+|-|.=. ++...|..|+++|.
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~K~ 47 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKD 47 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCCTT
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCcHH
Confidence 699999987644 56678999999864
No 27
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=62.15 E-value=3.3 Score=27.50 Aligned_cols=26 Identities=31% Similarity=0.975 Sum_probs=20.5
Q ss_pred ceecccccee-------------------ccccccceecCCCCCC
Q psy3565 24 YWDCSVCTYR-------------------NVAEAFKCSMCDVRKG 49 (168)
Q Consensus 24 ~WdCsvCt~r-------------------N~asA~KCv~C~tpk~ 49 (168)
.|-|.+|-|. ..+....|..|+++|.
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~K~ 47 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVGKD 47 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCBGG
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCcHH
Confidence 6999999884 4466779999999863
No 28
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=58.26 E-value=4 Score=26.68 Aligned_cols=26 Identities=23% Similarity=0.799 Sum_probs=19.7
Q ss_pred ceeccccceec-------------------cccccceecCCCCCC
Q psy3565 24 YWDCSVCTYRN-------------------VAEAFKCSMCDVRKG 49 (168)
Q Consensus 24 ~WdCsvCt~rN-------------------~asA~KCv~C~tpk~ 49 (168)
.|-|.+|-|.= .++...|..|+++|.
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~K~ 46 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKS 46 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCBGG
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCCHH
Confidence 58999997753 456678999998763
No 29
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=58.08 E-value=5.2 Score=29.00 Aligned_cols=29 Identities=21% Similarity=0.568 Sum_probs=22.3
Q ss_pred CCCceecccccee-------------------ccccccceecCCCCCC
Q psy3565 21 DENYWDCSVCTYR-------------------NVAEAFKCSMCDVRKG 49 (168)
Q Consensus 21 ~eg~WdCsvCt~r-------------------N~asA~KCv~C~tpk~ 49 (168)
....|-|.+|-|. +.++...|..|+.++.
T Consensus 32 ~m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~ 79 (87)
T 1s24_A 32 AYLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATKE 79 (87)
T ss_dssp CCCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCCGG
T ss_pred CCceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCCHH
Confidence 4568999999865 3456678999999863
No 30
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=55.21 E-value=5 Score=25.81 Aligned_cols=27 Identities=30% Similarity=0.860 Sum_probs=20.7
Q ss_pred Cceeccccceec------------cccccceecCCCCCC
Q psy3565 23 NYWDCSVCTYRN------------VAEAFKCSMCDVRKG 49 (168)
Q Consensus 23 g~WdCsvCt~rN------------~asA~KCv~C~tpk~ 49 (168)
..|-|.+|-|.= .+....|..|++++.
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKD 41 (46)
T ss_dssp CCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCBGG
T ss_pred CEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCcHH
Confidence 369999998854 355679999998863
No 31
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=48.53 E-value=9.2 Score=25.09 Aligned_cols=30 Identities=23% Similarity=0.614 Sum_probs=26.1
Q ss_pred CCCceeccccceeccccccceecCCCCCCC
Q psy3565 21 DENYWDCSVCTYRNVAEAFKCSMCDVRKGT 50 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~KCv~C~tpk~~ 50 (168)
..+.|-|.-|--+|.|-.-.|--|-+-+..
T Consensus 10 ~~D~WkC~~C~~~N~Pl~r~C~rCw~LRk~ 39 (46)
T 2c6a_A 10 LADYWKCTSCNEMNPPLPSHCNRCWALREN 39 (46)
T ss_dssp GGGCEECTTTCCEECSSCSSCTTTCCCCSS
T ss_pred ccceEecccccccCCCccchhhHHHhhccc
Confidence 347899999999999999999999877653
No 32
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=46.66 E-value=7.9 Score=26.70 Aligned_cols=29 Identities=28% Similarity=0.777 Sum_probs=22.0
Q ss_pred CCceeccccceecc-------------------ccccceecCCCCCCC
Q psy3565 22 ENYWDCSVCTYRNV-------------------AEAFKCSMCDVRKGT 50 (168)
Q Consensus 22 eg~WdCsvCt~rN~-------------------asA~KCv~C~tpk~~ 50 (168)
...|-|.+|-|.=. +....|..|+++|..
T Consensus 5 m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~K~~ 52 (70)
T 1dx8_A 5 EGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQ 52 (70)
T ss_dssp SSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCBGGG
T ss_pred CceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCCHHH
Confidence 34799999987643 556699999998643
No 33
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=43.73 E-value=8.9 Score=25.24 Aligned_cols=26 Identities=31% Similarity=0.836 Sum_probs=20.0
Q ss_pred ceeccccceec-------------------cccccceecCCCCCC
Q psy3565 24 YWDCSVCTYRN-------------------VAEAFKCSMCDVRKG 49 (168)
Q Consensus 24 ~WdCsvCt~rN-------------------~asA~KCv~C~tpk~ 49 (168)
.|-|.+|-|.= .+....|..|+++|.
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~K~ 47 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVGKI 47 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCCGG
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHH
Confidence 59999997753 355668999999863
No 34
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=38.21 E-value=14 Score=26.39 Aligned_cols=30 Identities=17% Similarity=0.478 Sum_probs=21.7
Q ss_pred cCCCCceeccccceecc----------ccccceecCCCCC
Q psy3565 19 AKDENYWDCSVCTYRNV----------AEAFKCSMCDVRK 48 (168)
Q Consensus 19 ~k~eg~WdCsvCt~rN~----------asA~KCv~C~tpk 48 (168)
.+-+-.++|++|--+|. ...+.|.+|+..-
T Consensus 18 ~~L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 18 GTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred CCCCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 45667899999987764 3456788887653
No 35
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=36.48 E-value=19 Score=24.34 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=23.9
Q ss_pred CCCceeccccceeccccccceecCCCC
Q psy3565 21 DENYWDCSVCTYRNVAEAFKCSMCDVR 47 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~KCv~C~tp 47 (168)
-...|-|.-|--+|-+.|.+|--|+..
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HhchhhhccccCcCCcccccccCCCCC
Confidence 456899999999999999999999853
No 36
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.87 E-value=20 Score=22.13 Aligned_cols=35 Identities=20% Similarity=0.536 Sum_probs=23.4
Q ss_pred hhhhhccCCCCceecccccee--------------ccccccceecCCCC
Q psy3565 13 KRRRKQAKDENYWDCSVCTYR--------------NVAEAFKCSMCDVR 47 (168)
Q Consensus 13 ~r~kr~~k~eg~WdCsvCt~r--------------N~asA~KCv~C~tp 47 (168)
.+..++...+..|.|.+|-.. +....+.|..|+..
T Consensus 7 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 55 (77)
T 2cot_A 7 GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKA 55 (77)
T ss_dssp CCCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCE
T ss_pred CCCcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCc
Confidence 345556667788999999532 22456888888754
No 37
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=34.78 E-value=13 Score=35.14 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.0
Q ss_pred CCCCceeccccceeccccccceecCC
Q psy3565 20 KDENYWDCSVCTYRNVAEAFKCSMCD 45 (168)
Q Consensus 20 k~eg~WdCsvCt~rN~asA~KCv~C~ 45 (168)
++...|.|.+|-+.|.....+|..|.
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~~~ 27 (800)
T 2wjy_A 2 KDLPIHACSYCGIHDPACVVYCNTSK 27 (800)
T ss_dssp CCCCTTSCTTTCCCCGGGEEEETTTT
T ss_pred CCCCchhccccCCCCCCeEEEcCCCC
Confidence 35567999999999999999999984
No 38
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=32.83 E-value=14 Score=24.63 Aligned_cols=13 Identities=38% Similarity=0.999 Sum_probs=11.5
Q ss_pred ceeccccceeccc
Q psy3565 24 YWDCSVCTYRNVA 36 (168)
Q Consensus 24 ~WdCsvCt~rN~a 36 (168)
.|-|.+|..+|..
T Consensus 33 ~W~C~~C~~~N~~ 45 (59)
T 2yrc_A 33 LWACNFCYQRNQF 45 (59)
T ss_dssp EEECSSSCCEEEC
T ss_pred EEEcccCCCcCCC
Confidence 7999999999963
No 39
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.03 E-value=17 Score=26.01 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=12.3
Q ss_pred CCCceeccccceecc
Q psy3565 21 DENYWDCSVCTYRNV 35 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~ 35 (168)
.+|.|-|..|.+...
T Consensus 60 P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 60 PGEEWSCSLCHVLPD 74 (88)
T ss_dssp CSSSCCCCSCCCCCS
T ss_pred cCCCcCCccccCCCc
Confidence 679999999987654
No 40
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=28.80 E-value=10 Score=26.58 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=14.6
Q ss_pred CCCceeccccceecccccc
Q psy3565 21 DENYWDCSVCTYRNVAEAF 39 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~ 39 (168)
.+|.|-|..|...+...++
T Consensus 63 P~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 63 PEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CSSCCCCHHHHHHTTSCC-
T ss_pred CCCceECccccCccchhhh
Confidence 5799999999987765543
No 41
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=28.09 E-value=11 Score=24.38 Aligned_cols=16 Identities=19% Similarity=0.814 Sum_probs=12.9
Q ss_pred CCCceeccccceeccc
Q psy3565 21 DENYWDCSVCTYRNVA 36 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~a 36 (168)
.+|.|-|..|.+.+..
T Consensus 49 p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 49 SDEKWLCRQCVFATTT 64 (66)
T ss_dssp SSCCCCCHHHHHTTSC
T ss_pred CCCCEECCCCcCcccc
Confidence 5789999999876643
No 42
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.91 E-value=32 Score=22.56 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.7
Q ss_pred CceeccccceeccccccceecCCCC
Q psy3565 23 NYWDCSVCTYRNVAEAFKCSMCDVR 47 (168)
Q Consensus 23 g~WdCsvCt~rN~asA~KCv~C~tp 47 (168)
....|..|-.+|-+.+.+|--|+..
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 4678999999999999999999876
No 43
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=26.60 E-value=28 Score=26.18 Aligned_cols=29 Identities=21% Similarity=0.567 Sum_probs=21.7
Q ss_pred CCCceeccccceecccc-----------------------ccceecCCCCCC
Q psy3565 21 DENYWDCSVCTYRNVAE-----------------------AFKCSMCDVRKG 49 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~as-----------------------A~KCv~C~tpk~ 49 (168)
.++.|-|..|-|.=... .++|..|+.+..
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 46799999997763321 578999999864
No 44
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=26.44 E-value=44 Score=24.90 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=15.0
Q ss_pred CcCCCCceEEEEeCCeeEEEee
Q psy3565 110 VDRTTAQTLEITVNNLTVKVTE 131 (168)
Q Consensus 110 VDRSSAq~~eVTVg~vTViITe 131 (168)
.+-..+...+|+|||-||.+.|
T Consensus 86 ~~~~~~~pvev~vGGAtvFvl~ 107 (114)
T 3m05_A 86 MEGTTAYPIKVQVGGATVLVLP 107 (114)
T ss_dssp ------CCEEEEECCEEEEEEE
T ss_pred cccccccceEEEEcceEEEEEE
Confidence 3556678899999999999987
No 45
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.34 E-value=21 Score=33.61 Aligned_cols=25 Identities=20% Similarity=0.551 Sum_probs=20.2
Q ss_pred CCCceeccccceeccccccceecCC
Q psy3565 21 DENYWDCSVCTYRNVAEAFKCSMCD 45 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~asA~KCv~C~ 45 (168)
+...|.|.+|-+.|.....+|..|.
T Consensus 8 ~~~~~~c~yc~~~~~~~~~~c~~~~ 32 (802)
T 2xzl_A 8 SASDNSCAYCGIDSAKCVIKCNSCK 32 (802)
T ss_dssp ----CCCTTTCCCCTTTEEEETTTC
T ss_pred cCChhhCcccCCCCCceEEEeCCCC
Confidence 4467999999999999999999995
No 46
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=23.50 E-value=24 Score=22.90 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=11.1
Q ss_pred CCCceecccccee
Q psy3565 21 DENYWDCSVCTYR 33 (168)
Q Consensus 21 ~eg~WdCsvCt~r 33 (168)
.+|.|-|..|..+
T Consensus 46 p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 46 PEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCCCTTGGGG
T ss_pred CCCceECcccccc
Confidence 5789999999865
No 47
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.26 E-value=44 Score=24.00 Aligned_cols=29 Identities=14% Similarity=0.454 Sum_probs=21.7
Q ss_pred CCCceeccccceecccc--cc-ceecCCCCCC
Q psy3565 21 DENYWDCSVCTYRNVAE--AF-KCSMCDVRKG 49 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~as--A~-KCv~C~tpk~ 49 (168)
.++.|-|..|-+.=... .. .|..|+.+..
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 47789999997764432 34 8999999853
No 48
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=22.32 E-value=28 Score=25.48 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=19.3
Q ss_pred CCCceeccccc--eeccccccceecCCC
Q psy3565 21 DENYWDCSVCT--YRNVAEAFKCSMCDV 46 (168)
Q Consensus 21 ~eg~WdCsvCt--~rN~asA~KCv~C~t 46 (168)
.+|.|-|+.|+ +=..+..+.|..|-.
T Consensus 50 P~g~W~Cp~c~C~~C~k~~~~~C~~Cp~ 77 (107)
T 4gne_A 50 PYGKWECPWHQCDECSSAAVSFCEFCPH 77 (107)
T ss_dssp CSSCCCCGGGBCTTTCSBCCEECSSSSC
T ss_pred CCCCEECCCCCCCcCCCCCCcCcCCCCc
Confidence 57999999654 555667788888864
No 49
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=21.07 E-value=65 Score=24.45 Aligned_cols=17 Identities=24% Similarity=0.591 Sum_probs=13.9
Q ss_pred CCCceeccccceecccc
Q psy3565 21 DENYWDCSVCTYRNVAE 37 (168)
Q Consensus 21 ~eg~WdCsvCt~rN~as 37 (168)
.+|.|-|..|.-.+.++
T Consensus 39 p~~~W~C~~C~~~~~~~ 55 (184)
T 3o36_A 39 PSGEWICTFCRDLSKPE 55 (184)
T ss_dssp CSSCCCCTTTSCSSSCS
T ss_pred CCCCEECccccCccccc
Confidence 57889999998877665
Done!