RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3565
         (168 letters)



>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 31.7 bits (72), Expect = 0.003
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 25 WDCSVCTYRNVAEAFKCSMCDVRK 48
          WDC  C  +N  EA KC  C+  K
Sbjct: 5  WDCDTCLVQNKPEAIKCVACETPK 28


>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain
          {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 36

 Score = 27.3 bits (61), Expect = 0.13
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 21 DENYWDCSVCTYRNVAEA-FKCSMCDVRKG 49
          D+ +  C +C Y +  E   KC +C   K 
Sbjct: 2  DDKFHLCPICGYIHKGEDFEKCPICFRPKD 31


>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 31

 Score = 26.2 bits (57), Expect = 0.27
 Identities = 8/28 (28%), Positives = 10/28 (35%)

Query: 19 AKDENYWDCSVCTYRNVAEAFKCSMCDV 46
                W C  CT+ N      C MC +
Sbjct: 1  GSTSAMWACQHCTFMNQPGTGHCEMCSL 28


>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
          {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 37

 Score = 24.3 bits (53), Expect = 1.6
 Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)

Query: 20 KDENYWDCSVCTYRNVAEAF-KCSMCDVRKG 49
          + +  + C +C Y  V EA   C +C   K 
Sbjct: 1  EIKKVYICPICGYTAVDEAPEYCPVCGAPKE 31


>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 174

 Score = 26.1 bits (56), Expect = 1.7
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 6   MDRKTPTKRRRKQAKDEN---YWDCSVCTYRNVAEAFK 40
            +R+  T+  +   +D     Y++ S     NVA AF+
Sbjct: 128 SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 165


>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 166

 Score = 24.6 bits (52), Expect = 6.4
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 2   KIKGMDRKTPTKRRRKQAKDEN--YWDCSVCTYRNVAEAFKCSMCDVRK 48
           K     R   +++ +  A+     Y + S  T + V +AF   + ++R+
Sbjct: 117 KCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165


>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 177

 Score = 24.4 bits (52), Expect = 7.8
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 1   MKIKGMDRKTPTKRRRKQAKDEN--YWDCSVCTYRNVAEAFK 40
            KI   +R+       K A+  +  + + S  T   V  AF+
Sbjct: 121 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE 162


>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 184

 Score = 24.3 bits (51), Expect = 8.4
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 13  KRRRKQAKDENYWDCSVCTYRNVAEAFKCSMCDVRK 48
           +       +  Y++ S     NV +AF+    +  K
Sbjct: 134 QAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 169


>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
          Length = 167

 Score = 24.2 bits (51), Expect = 8.5
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 17  KQAKDENYWDCSVCTYRNVAEAFKCSMCDVRK 48
           +Q  +  + + S  +  NV E F   +  + +
Sbjct: 136 RQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.126    0.364 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 581,612
Number of extensions: 25300
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 22
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.2 bits)